Pregenerated sensors for TEX50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049160Ensembl transcript IDs: ENSMUST00000135643.8, ENSMUST00000178511.3
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGCTGTCATACTTAGCAGATGTGGAGGGGCTCAGGAGTCAGGCTaGCCATGTTGGTTGGTATCTTGCATCCATCATTACTGGTTCCTT | + |
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Preference number: 1 (lower is better) Translates to: LAVILSRCGGAQESG*PCWLVSCIHHYWFL Trigger: AAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACATCTGCTAAGTATGACAGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR CCA 90 bp | TTAGCAGATGTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTTGGTTaGTATCTTGCATCCATCATTACTGGTTCCTTGAGCCAAGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: LADVEGLRSQAAHVG*YLASIITGSLSQVS Trigger: AGAAACTTGGCTCAAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACATCTGCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR CCA 90 bp | ATACTTAGCAGATGTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTTaGTTGGTATCTTGCATCCATCATTACTGGTTCCTTGAGCCAAGT | + |
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Preference number: 1 (lower is better) Translates to: ILSRCGGAQESGCPC*LVSCIHHYWFLEPS Trigger: ACTTGGCTCAAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACATCTGCTAAGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR CAA 90 bp | CTTAGCAGATGTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTTGGTaGGTATCTTGCATCCATCATTACTGGTTCCTTGAGCCAAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: LSRCGGAQESGCPCW*VSCIHHYWFLEPSF Trigger: GAAACTTGGCTCAAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACATCTGCTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR-3UTR GCA 90 bp | GCCACGTTAGAAAGAGTGGATTCGTTTTCAGTTGAGCGGAAACCCAGAGCTCGTTCCTCAGACAGTCCCTaGAATAGATTTCTTTTATAC | + |
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Preference number: 2 (lower is better) Translates to: ATLERVDSFSVERKPRARSSDSP*NRFLLY Trigger: GTATAAAAGAAATCTATTGCAGGGACTGTCTGAGGA...ACGAGCTCTGGGTTTCCGCTCAACTGAAAACGAATCCACTCTTTCTAACGTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR-3UTR GCA 90 bp | TTCCAGTTAAGGTGTTCTCAGTTTATTCTGGGAGCCACGTTAGAAAGAGTGGATTCCTCAGACAGTCCCTaGAATAGATTTCTTTTATAC | + |
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Preference number: 2 (lower is better) Translates to: FQLRCSQFILGATLERVDSSDSP*NRFLLY Trigger: GTATAAAAGAAATCTATTGCAGGGACTGTCTGAGGA...ATCCACTCTTTCTAACGTGGCTCCCAGAATAAACTGAGAACACCTTAACTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR CCA 72 bp | GTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTTGGTTaGTATCTTGCATCCATCATTACTGGTTCCTTGAGC | + |
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Preference number: 3 (lower is better) Translates to: VEGLRSQAAHVG*YLASIITGSLS Trigger: GCTCAAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR CCA 72 bp | AGATGTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTTaGTTGGTATCTTGCATCCATCATTACTGGTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: RCGGAQESGCPC*LVSCIHHYWFL Trigger: AAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR GCA 72 bp | GCTCAGGAGTCAGGCTGCCCATGTTGGTTGGTATCTTaGATCCATCATTACTGGTTCCTTGAGCCAAGTTTC | + |
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Preference number: 3 (lower is better) Translates to: AQESGCPCWLVS*IHHYWFLEPSF Trigger: GAAACTTGGCTCAAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR-3UTR CAA 90 bp | GATTACACCCTGAAGTTCCAGTTAAGGTGTTCTCAGTTTATTCTGGGAGCCACGTGGATTCGTTTTCAGTaGAGCGGAAACCCAGAGCTC | + |
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Preference number: 3 (lower is better) Translates to: DYTLKFQLRCSQFILGATWIRFQ*SGNPEL Trigger: GAGCTCTGGGTTTCCGCTCAACTGAAAACGAATCCA...CGTGGCTCCCAGAATAAACTGAGAACACCTTAACTGGAACTTCAGGGTGTAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR GCA 72 bp | GCCCCCAAAGAAACCTTTGTGTCCTCAGACAGTCCCTaGAATAGATTTCTTTTATACTCCGCACTTGACCAA | + |
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Preference number: 3 (lower is better) Translates to: APKETFVSSDSP*NRFLLYSALDQ Trigger: TTGGTCAAGTGCGGAGTATAAAAGAAATCTATTGCAGGGACTGTCTGAGGACACAAAGGTTTCTTTGGGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR-3UTR CAA 90 bp | GAAAGAGTGGATTCGTTTTCAGTTGAGCGGAAACCCAGAGCTCGTCTGAGAATTTTTTATACTCCGCACTaGACCAAGCTACATTTGCAC | + |
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Preference number: 3 (lower is better) Translates to: ERVDSFSVERKPRARLRIFYTPH*TKLHLH Trigger: GTGCAAATGTAGCTTGGTCAAGTGCGGAGTATAAAA...AATTCTCAGACGAGCTCTGGGTTTCCGCTCAACTGAAAACGAATCCACTCTTTC 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR-3UTR CAA 90 bp | AGACTGATTGTTCCAAAGTGCAGCTTGCTGTCATACTTAGCAGATGTGGAGGGGATGTTGGTTGGTATCTaGCATCCATCATTACTGGTT | + |
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Preference number: 3 (lower is better) Translates to: RLIVPKCSLLSYLADVEGMLVGI*HPSLLV Trigger: AACCAGTAATGATGGATGCAAGATACCAACCAACAT...CCCCTCCACATCTGCTAAGTATGACAGCAAGCTGCACTTTGGAACAATCAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGTTAAGGTGTTCTCAGTTTATTCTGGGAGCCACGTTAGAAAGAGTGGATTTTTATACTCCGCACTaGACCAAGCTACATTTGCAC | + |
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Preference number: 3 (lower is better) Translates to: FQLRCSQFILGATLERVDFYTPH*TKLHLH Trigger: GTGCAAATGTAGCTTGGTCAAGTGCGGAGTATAAAA...ATCCACTCTTTCTAACGTGGCTCCCAGAATAAACTGAGAACACCTTAACTGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR CAA 72 bp | TGTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTTGGTaGGTATCTTGCATCCATCATTACTGGTTCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: CGGAQESGCPCW*VSCIHHYWFLE Trigger: CTCAAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| 3UTR CAA 72 bp | CAGATGTGGAGGGGCTCAGGAGTCAGGCTGCCCATGTaGGTTGGTATCTTGCATCCATCATTACTGGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QMWRGSGVRLPM*VGILHPSLLVP Trigger: AGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGCCCCTCCACATCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS-3UTR TCA 90 bp | GCTCAGGAGTCAGGCTGCCCATGTTGGTTGGTATCTTGCATCCATCATTACTGGTGGAGAAAGTCTCTCTaGAGAAGCAGAAGAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: AQESGCPCWLVSCIHHYWWRKSL*RSRRAE Trigger: TTCTGCTCTTCTGCTTCTTCAGAGAGACTTTCTCCA...CCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTCCTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS-3UTR TCA 90 bp | ACGTTAGAAAGAGTGGATTCGTTTTCAGTTGAGCGGAAACCCAGAGCTCGTCTGTGGAGAAAGTCTCTCTaGAGAAGCAGAAGAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: TLERVDSFSVERKPRARLWRKSL*RSRRAE Trigger: TTCTGCTCTTCTGCTTCTTCAGAGAGACTTTCTCCA...CAGACGAGCTCTGGGTTTCCGCTCAACTGAAAACGAATCCACTCTTTCTAACGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR GCA 90 bp | GAGTCAGGCTGCCCATGTTGGTTGGTATCTTGCATCCATCATTACTGGTTCCTTATAGCAGTGATCTTCTaGTCCTCTTCTCCCTTACTC | + |
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Preference number: 4 (lower is better) Translates to: ESGCPCWLVSCIHHYWFLIAVIF*SSSPLL Trigger: GAGTAAGGGAGAAGAGGAGCAGAAGATCACTGCTAT...AAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS-3UTR CCA 90 bp | GTGTCCTCAGACAGTCCCTGCAATAGATTTCTTTTATACTCCGCACTTGACCAAGTAGTGCACTTCCTCTaGAAAAATCTCCCATCCGAC | + |
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Preference number: 4 (lower is better) Translates to: VSSDSPCNRFLLYSALDQVVHFL*KNLPSD Trigger: GTCGGATGGGAGATTTTTCCAGAGGAAGTGCACTAC...TTGGTCAAGTGCGGAGTATAAAAGAAATCTATTGCAGGGACTGTCTGAGGACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR CAA 72 bp | GATTTCTTTTATACTCCGCACTTGACCAAGCTACATTaGCACGAGCTTTTGTCCTCTCCGCACTTGACCAAG | + |
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Preference number: 4 (lower is better) Translates to: DFFYTPHLTKLH*HELLSSPHLTK Trigger: CTTGGTCAAGTGCGGAGAGGACAAAAGCTCGTGCAAATGTAGCTTGGTCAAGTGCGGAGTATAAAAGAAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR GCA 90 bp | GTGTCCTCAGACAGTCCCTGCAATAGATTTCTTTTATACTCCGCACTTGACCAAATAGCAGTGATCTTCTaGTCCTCTTCTCCCTTACTC | + |
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Preference number: 4 (lower is better) Translates to: VSSDSPCNRFLLYSALDQIAVIF*SSSPLL Trigger: GAGTAAGGGAGAAGAGGAGCAGAAGATCACTGCTAT...TTGGTCAAGTGCGGAGTATAAAAGAAATCTATTGCAGGGACTGTCTGAGGACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR CAA 72 bp | CTTTTAAATCATAGACTGATTGTTCCAAAGTGCAGCTaGCTGTCATACTTAGCAGATGTGGAGGGGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLNHRLIVPKCS*LSYLADVEGLR Trigger: CCTGAGCCCCTCCACATCTGCTAAGTATGACAGCAAGCTGCACTTTGGAACAATCAGTCTATGATTTAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS-3UTR GCA 90 bp | CCTTTGTGTCCTCAGACAGTCCCTGCAATAGATTTCTTTTATACTCCGCACTTGTTGTGGCCAGTAGTCTaGAGAGGATTTGTTCAATGT | + |
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Preference number: 4 (lower is better) Translates to: PLCPQTVPAIDFFYTPHLLWPVV*RGFVQC Trigger: ACATTGAACAAATCCTCTGCAGACTACTGGCCACAA...CAAGTGCGGAGTATAAAAGAAATCTATTGCAGGGACTGTCTGAGGACACAAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| 3UTR CAA 72 bp | ACAGTCCCTGCAATAGATTTCTTTTATACTCCGCACTaGACCAAGCTACATTTGCACGAGCTTTTGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: TVPAIDFFYTPH*TKLHLHELLSS Trigger: AGAGGACAAAAGCTCGTGCAAATGTAGCTTGGTCAAGTGCGGAGTATAAAAGAAATCTATTGCAGGGACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR GCA 90 bp | TCAGACAGTCCCTGCAATAGATTTCTTTTATACTCCGCACTTGACCAAGCTACATTGTGGCCAGTAGTCTaGAGAGGATTTGTTCAATGT | + |
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Preference number: 4 (lower is better) Translates to: SDSPCNRFLLYSALDQATLWPVV*RGFVQC Trigger: ACATTGAACAAATCCTCTGCAGACTACTGGCCACAA...TGTAGCTTGGTCAAGTGCGGAGTATAAAAGAAATCTATTGCAGGGACTGTCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR CCA 90 bp | ATAGATTTCTTTTATACTCCGCACTTGACCAAGCTACATTTGCACGAGCTTTTGGTAGTGCACTTCCTCTaGAAAAATCTCCCATCCGAC | + |
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Preference number: 4 (lower is better) Translates to: IDFFYTPHLTKLHLHELLVVHFL*KNLPSD Trigger: GTCGGATGGGAGATTTTTCCAGAGGAAGTGCACTAC...CAAAAGCTCGTGCAAATGTAGCTTGGTCAAGTGCGGAGTATAAAAGAAATCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR CAA 90 bp | GATTACACCCTGAAGTTCCAGTTAAGGTGTTCTCAGTTTATTCTGGGAGCCACGCGACCTTTGTCCACGTaGTCCCGTCACAAATGGAGA | + |
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Preference number: 5 (lower is better) Translates to: DYTLKFQLRCSQFILGATRPLST*SRHKWR Trigger: TCTCCATTTGTGACGGGACAACGTGGACAAAGGTCG...CGTGGCTCCCAGAATAAACTGAGAACACCTTAACTGGAACTTCAGGGTGTAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS-3UTR CAA 90 bp | ATTGTTCCAAAGTGCAGCTTGCTGTCATACTTAGCAGATGTGGAGGGGCTCAGGTCCATGTTAGCAAAATaGCAGCAGAGTGTGTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: IVPKCSLLSYLADVEGLRSMLAK*QQSVSR Trigger: TCTGGACACACTCTGCTGCAATTTTGCTAACATGGA...CCTGAGCCCCTCCACATCTGCTAAGTATGACAGCAAGCTGCACTTTGGAACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS CCA 90 bp | AGTGGTGAGACACGTGCTTCAGGAACTTGGTCATCATTGATGTTGTaGCCAGTAGTCTGCAGAGGATTTGTTCAATGTCATGGATGGATG | + |
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Preference number: 5 (lower is better) Translates to: SGETRASGTWSSLML*PVVCRGFVQCHGWM Trigger: CATCCATCCATGACATTGAACAAATCCTCTGCAGACTACTGGCCACAACATCAATGATGACCAAGTTCCTGAAGCACGTGTCTCACCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR CAA 90 bp | TTCCAGTTAAGGTGTTCTCAGTTTATTCTGGGAGCCACGTTAGAAAGAGTGGATCGACCTTTGTCCACGTaGTCCCGTCACAAATGGAGA | + |
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Preference number: 5 (lower is better) Translates to: FQLRCSQFILGATLERVDRPLST*SRHKWR Trigger: TCTCCATTTGTGACGGGACAACGTGGACAAAGGTCG...ATCCACTCTTTCTAACGTGGCTCCCAGAATAAACTGAGAACACCTTAACTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS-3UTR CAA 90 bp | GAGTCAGGCTGCCCATGTTGGTTGGTATCTTGCATCCATCATTACTGGTTCCTTACGTGCTTCAGGAACTaGGTCATCATTGATGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: ESGCPCWLVSCIHHYWFLTCFRN*VIIDVV Trigger: CACAACATCAATGATGACCAAGTTCCTGAAGCACGT...AAGGAACCAGTAATGATGGATGCAAGATACCAACCAACATGGGCAGCCTGACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135643.8 |
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| CDS-3UTR CAA 90 bp | AGAGTGGATTCGTTTTCAGTTGAGCGGAAACCCAGAGCTCGTCTGAGAATTTTTTCCATGTTAGCAAAATaGCAGCAGAGTGTGTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RVDSFSVERKPRARLRIFSMLAK*QQSVSR Trigger: TCTGGACACACTCTGCTGCAATTTTGCTAACATGGA...AAAAATTCTCAGACGAGCTCTGGGTTTCCGCTCAACTGAAAACGAATCCACTCT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS CCA 72 bp | GTGGCCAGTAGTCTGCAGAGGATTTGTTCAATGTCATaGATGGATGGGCTCAGGTCTAGGCCATTAGCGTGT | + |
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Preference number: 6 (lower is better) Translates to: VASSLQRICSMS*MDGLRSRPLAC Trigger: ACACGCTAATGGCCTAGACCTGAGCCCATCCATCCATGACATTGAACAAATCCTCTGCAGACTACTGGCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS CAA 72 bp | AGTGCACTTCCTCTGGAAAAATCTCCCATCCGACCTTaGTCCACGTTGTCCCGTCACAAATGGAGAAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SALPLEKSPIRP*STLSRHKWRKS Trigger: AGACTTTCTCCATTTGTGACGGGACAACGTGGACAAAGGTCGGATGGGAGATTTTTCCAGAGGAAGTGCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS CAA 90 bp | AAGAGTGGTGAGACACGTGCTTCAGGAACTTGGTCATCATTGATGTaGTGGCCAGTAGTCTGCAGAGGATTTGTTCAATGTCATGGATGG | + |
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Preference number: 6 (lower is better) Translates to: KSGETRASGTWSSLM*WPVVCRGFVQCHGW Trigger: CCATCCATGACATTGAACAAATCCTCTGCAGACTACTGGCCACAACATCAATGATGACCAAGTTCCTGAAGCACGTGTCTCACCACTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS GCA 72 bp | GGAACTTGGTCATCATTGATGTTGTGGCCAGTAGTCTaGAGAGGATTTGTTCAATGTCATGGATGGATGGGC | + |
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Preference number: 6 (lower is better) Translates to: GTWSSLMLWPVV*RGFVQCHGWMG Trigger: GCCCATCCATCCATGACATTGAACAAATCCTCTGCAGACTACTGGCCACAACATCAATGATGACCAAGTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS CAA 72 bp | GAGACACGTGCTTCAGGAACTTGGTCATCATTGATGTaGTGGCCAGTAGTCTGCAGAGGATTTGTTCAATGT | + |
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Preference number: 6 (lower is better) Translates to: ETRASGTWSSLM*WPVVCRGFVQC Trigger: ACATTGAACAAATCCTCTGCAGACTACTGGCCACAACATCAATGATGACCAAGTTCCTGAAGCACGTGTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS CCA 72 bp | ACACGTGCTTCAGGAACTTGGTCATCATTGATGTTGTaGCCAGTAGTCTGCAGAGGATTTGTTCAATGTCAT | + |
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Preference number: 6 (lower is better) Translates to: TRASGTWSSLML*PVVCRGFVQCH Trigger: ATGACATTGAACAAATCCTCTGCAGACTACTGGCCACAACATCAATGATGACCAAGTTCCTGAAGCACGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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| CDS TCA 72 bp | TTACGTTGTTGCTTAGCTTTCTTGACAGAAGAGTGGTaGGACACGTGCTTCAGGAACTTGGTCATCATTGAT | + |
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Preference number: 6 (lower is better) Translates to: LRCCLAFLTEEW*DTCFRNLVIID Trigger: ATCAATGATGACCAAGTTCCTGAAGCACGTGTCTCACCACTCTTCTGTCAAGAAAGCTAAGCAACAACGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135643.8 ENSMUST00000178511.3 |
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