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Pregenerated sensors for TEX49 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022993

Ensembl transcript IDs: ENSMUST00000023728.8

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CCTCTCCCCACTTCTTTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCTGGACCGCCAGAAGCTaGAGTTCTGAGCATCAGTCA +
Preference number: 4 (lower is better)
Translates to: PLPTSFMAWPSSPPPRPPWTARS*SSEHQS
Trigger: TGACTGATGCTCAGAACTTCAGCTTCTGGCGGTCCA...GGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAAAGAAGTGGGGAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS-3UTR CCA 90 bp TTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCTTCCAGTTTTCATCTTCGGGGGAAGCCTTGTaGGCACTTCATCCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: FMAWPSSPPPRPPFQFSSSGEAL*ALHPSG
Trigger: ACCAGAAGGATGAAGTGCCCACAAGGCTTCCCCCGA...AGATGAAAACTGGAAGGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS-3UTR TCA 90 bp TTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCTTCCAGTTTTCATCTCAGAAGCTGAAGTTCTaGGCATCAGTCACAGGGACT +
Preference number: 4 (lower is better)
Translates to: FMAWPSSPPPRPPFQFSSQKLKF*ASVTGT
Trigger: AGTCCCTGTGACTGATGCTCAGAACTTCAGCTTCTG...AGATGAAAACTGGAAGGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS-3UTR CCA 90 bp CCTCTCCCCACTTCTTTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCCACAAATCTGGTCATTaGGCTTTTAATGAGACAATG +
Preference number: 4 (lower is better)
Translates to: PLPTSFMAWPSSPPPRPPHKSGH*AFNETM
Trigger: CATTGTCTCATTAAAAGCCCAATGACCAGATTTGTG...GGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAAAGAAGTGGGGAGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS-3UTR TCA 90 bp TTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCTTCCAGTTTTCATCTATAATTACCATCTTCTaGGATAATCGGGGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: FMAWPSSPPPRPPFQFSSIITIF*DNRGKP
Trigger: AGGCTTCCCCCGATTATCTCAGAAGATGGTAATTAT...AGATGAAAACTGGAAGGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS-3UTR CCA 90 bp TTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCTTCCAGTTTTCATCTAATGAGACAATGGTGTaGAGTCTTGATCCAAGGAAT +
Preference number: 4 (lower is better)
Translates to: FMAWPSSPPPRPPFQFSSNETMV*SLDPRN
Trigger: ATTCCTTGGATCAAGACTCCACACCATTGTCTCATT...AGATGAAAACTGGAAGGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS-3UTR CAA 90 bp CCCACTTCTTTCATGGCTTGGCCATCTTCACCCCCTCCTCGCCCTCCCTTCCAGCAATGGTGTGGAGTCTaGATCCAAGGAATGGCTTTC +
Preference number: 5 (lower is better)
Translates to: PTSFMAWPSSPPPRPPFQQWCGV*IQGMAF
Trigger: GAAAGCCATTCCTTGGATCAAGACTCCACACCATTG...CTGGAAGGGAGGGCGAGGAGGGGGTGAAGATGGCCAAGCCATGAAAGAAGTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 90 bp GTGTGGAGTCTTGATCCAAGGAATGGCTTTCTCTGGACGCACGCCTaGGATGTTGGACCGCCAGAAGCTGAAGTTCTGAGCATCAGTCAC +
Preference number: 5 (lower is better)
Translates to: VWSLDPRNGFLWTHA*DVGPPEAEVLSISH
Trigger: GTGACTGATGCTCAGAACTTCAGCTTCTGGCGGTCCAACATCCCAGGCGTGCGTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 90 bp AATGAGACAATGGTGTGGAGTCTTGATCCAAGGAATGGCTTTCTCTaGACGCACGCCTGGGATGTTGGACCGCCAGAAGCTGAAGTTCTG +
Preference number: 5 (lower is better)
Translates to: NETMVWSLDPRNGFL*THAWDVGPPEAEVL
Trigger: CAGAACTTCAGCTTCTGGCGGTCCAACATCCCAGGCGTGCGTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACACCATTGTCTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 90 bp ATGGTCCACAAATCTGGTCATTGGGCTTTTAATGAGACAATGGTGTaGAGTCTTGATCCAAGGAATGGCTTTCTCTGGACGCACGCCTGG +
Preference number: 5 (lower is better)
Translates to: MVHKSGHWAFNETMV*SLDPRNGFLWTHAW
Trigger: CCAGGCGTGCGTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACACCATTGTCTCATTAAAAGCCCAATGACCAGATTTGTGGACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS TCA 90 bp GTACCTCTCATGGCTGTTCTGGTGCACAGAATAATTACCATCTTCTaGGATAATCGGGGGAAGCCTTGTGGGCACTTCATCCTTCTGGTT +
Preference number: 5 (lower is better)
Translates to: VPLMAVLVHRIITIF*DNRGKPCGHFILLV
Trigger: AACCAGAAGGATGAAGTGCCCACAAGGCTTCCCCCGATTATCTCAGAAGATGGTAATTATTCTGTGCACCAGAACAGCCATGAGAGGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 72 bp CTTGATCCAAGGAATGGCTTTCTCTGGACGCACGCCTaGGATGTTGGACCGCCAGAAGCTGAAGTTCTGAGC +
Preference number: 6 (lower is better)
Translates to: LDPRNGFLWTHA*DVGPPEAEVLS
Trigger: GCTCAGAACTTCAGCTTCTGGCGGTCCAACATCCCAGGCGTGCGTCCAGAGAAAGCCATTCCTTGGATCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 72 bp ATGGTGTGGAGTCTTGATCCAAGGAATGGCTTTCTCTaGACGCACGCCTGGGATGTTGGACCGCCAGAAGCT +
Preference number: 6 (lower is better)
Translates to: MVWSLDPRNGFL*THAWDVGPPEA
Trigger: AGCTTCTGGCGGTCCAACATCCCAGGCGTGCGTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CAA 90 bp ACAAATCTGGTCATTGGGCTTTTAATGAGACAATGGTGTGGAGTCTaGATCCAAGGAATGGCTTTCTCTGGACGCACGCCTGGGATGTTG +
Preference number: 6 (lower is better)
Translates to: TNLVIGLLMRQWCGV*IQGMAFSGRTPGML
Trigger: CAACATCCCAGGCGTGCGTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACACCATTGTCTCATTAAAAGCCCAATGACCAGATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 72 bp AAATCTGGTCATTGGGCTTTTAATGAGACAATGGTGTaGAGTCTTGATCCAAGGAATGGCTTTCTCTGGACG +
Preference number: 6 (lower is better)
Translates to: KSGHWAFNETMV*SLDPRNGFLWT
Trigger: CGTCCAGAGAAAGCCATTCCTTGGATCAAGACTCCACACCATTGTCTCATTAAAAGCCCAATGACCAGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8
CDS CCA 72 bp TCCACAAATCTGGTCATTGGGCTTTTAATGAGACAATaGTGTGGAGTCTTGATCCAAGGAATGGCTTTCTCT +
Preference number: 6 (lower is better)
Translates to: STNLVIGLLMRQ*CGVLIQGMAFS
Trigger: AGAGAAAGCCATTCCTTGGATCAAGACTCCACACCATTGTCTCATTAAAAGCCCAATGACCAGATTTGTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023728.8