Pregenerated sensors for TEX48 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058935Ensembl transcript IDs: ENSMUST00000102861.8, ENSMUST00000102862.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCATGACTCCTGTCCACTaGCTTCTTCATCTCATGGAG | + |
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Preference number: 2 (lower is better) Translates to: PSLAVRIWGDSHQWHRDGMTPVH*LLHLME Trigger: CTCCATGAGATGAAGAAGGCAGTGGACAGGAGTCAT...GCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| 3UTR-3UTR GCA 90 bp | CCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCTATGACTCCTGTCCACTaGCTTCTTCATCTCATGGAG | + |
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Preference number: 2 (lower is better) Translates to: PPWLSGSGVTHTSGTGMAMTPVH*LLHLME Trigger: CTCCATGAGATGAAGAAGGCAGTGGACAGGAGTCAT...AGCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCTTTGTGGTGGAGTTTCTaGATTGGTCTTCATGACTCC | + |
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Preference number: 2 (lower is better) Translates to: PPWLSGSGVTHTSGTGMALWWSF*IGLHDS Trigger: GGAGTCATGAAGACCAATTCAGAAACTCCACCACAA...AGCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR GCA 90 bp | CCCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCGCCAACGACGGACTGTaGGGTAGCTCTCTTGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: PSLAVRIWGDSHQWHRDGANDGL*GSSLEV Trigger: AACCTCAAGAGAGCTACCGCACAGTCCGTCGTTGGC...GCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR GCA 90 bp | CCCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCCTGCTGGCAGTGGAGTaGTTTTCTTGGCCAACGACG | + |
|
Preference number: 4 (lower is better) Translates to: PSLAVRIWGDSHQWHRDGLLAVE*FSWPTT Trigger: CGTCGTTGGCCAAGAAAAGCACTCCACTGCCAGCAG...GCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CCA 90 bp | CCCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCAATCACTGCTGGCAGTaGAGTGCTTTTCTTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: PSLAVRIWGDSHQWHRDGNHCWQ*SAFLGQ Trigger: TTGGCCAAGAAAAGCACTCCACTGCCAGCAGTGATT...GCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR GCA 90 bp | GGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTGTGGAACTGCCACTAGAACTGCTGGCAGTGGAGTaGTTTTCTTGGCCAACGACG | + |
|
Preference number: 4 (lower is better) Translates to: GDPPVAEQLRACVELPLELLAVE*FSWPTT Trigger: CGTCGTTGGCCAAGAAAAGCACTCCACTGCCAGCAG...TTCTAGTGGCAGTTCCACACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CCA 90 bp | CCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCTAATCACTGCTGGCAGTaGAGTGCTTTTCTTGGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PPWLSGSGVTHTSGTGMANHCWQ*SAFLGQ Trigger: TTGGCCAAGAAAAGCACTCCACTGCCAGCAGTGATT...AGCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR TCA 90 bp | GGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTGTGGAACTGCCACTAGAACCCAGCAGCATAAACTaGAGATCTTTGAGGCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: GDPPVAEQLRACVELPLEPSSIN*RSLRQG Trigger: CCCTTGCCTCAAAGATCTTCAGTTTATGCTGCTGGG...TTCTAGTGGCAGTTCCACACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR TCA 90 bp | CTGCCTTCTTCATCTCATGGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTCCCAGCAGCATAAACTaGAGATCTTTGAGGCAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LPSSSHGDPPVAEQLRACPSSIN*RSLRQG Trigger: CCCTTGCCTCAAAGATCTTCAGTTTATGCTGCTGGG...ACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCCATGAGATGAAGAAGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR GCA 90 bp | CTGCCTTCTTCATCTCATGGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTGCTCTTCATAATCACTaGTGGCAGTGGAGTGCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: LPSSSHGDPPVAEQLRACALHNH*WQWSAF Trigger: AAAAGCACTCCACTGCCAGCAGTGATTATGAAGAGC...ACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCCATGAGATGAAGAAGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CCA 90 bp | GGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTGTGGAACTGCCACTAGAACTTCATAATCACTGCTaGCAGTGGAGTGCTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GDPPVAEQLRACVELPLELHNHC*QWSAFL Trigger: AAGAAAAGCACTCCACTGCCAGCAGTGATTATGAAG...TTCTAGTGGCAGTTCCACACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CCA 90 bp | CTGCCTTCTTCATCTCATGGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTCTTCATAATCACTGCTaGCAGTGGAGTGCTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LPSSSHGDPPVAEQLRACLHNHC*QWSAFL Trigger: AAGAAAAGCACTCCACTGCCAGCAGTGATTATGAAG...ACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCCATGAGATGAAGAAGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CAA 90 bp | CCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCTTCAGCGAATTGTAGGTaGGTGTCTGGCTCTCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: PPWLSGSGVTHTSGTGMASANCR*VSGSLG Trigger: GCCAAGAGAGCCAGACACCAACCTACAATTCGCTGA...AGCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CAA 90 bp | GGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTGTGGAACTGCCACTAGAATCAGCGAATTGTAGGTaGGTGTCTGGCTCTCTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: GDPPVAEQLRACVELPLESANCR*VSGSLG Trigger: GCCAAGAGAGCCAGACACCAACCTACAATTCGCTGA...TTCTAGTGGCAGTTCCACACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CAA 90 bp | CCCTCCCTGGCTGTCAGGATCTGGGGTGACTCACACCAGTGGCACAGGGATGGCTATCCTGTTTGTATATaGTATGCAGTCAGCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: PSLAVRIWGDSHQWHRDGYPVCI*YAVSSS Trigger: TGAAGAGCTGACTGCATACAATATACAAACAGGATA...GCCATCCCTGTGCCACTGGTGTGAGTCACCCCAGATCCTGACAGCCAGGGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CAA 90 bp | GGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTGTGGAACTGCCACTAGAATATCCTGTTTGTATATaGTATGCAGTCAGCTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: GDPPVAEQLRACVELPLEYPVCI*YAVSSS Trigger: TGAAGAGCTGACTGCATACAATATACAAACAGGATA...TTCTAGTGGCAGTTCCACACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS-3UTR CAA 90 bp | CTGCCTTCTTCATCTCATGGAGACCCTCCAGTAGCTGAGCAGCTCAGAGCCTGTTTTAGGGTATCCTGTTaGTATATTGTATGCAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: LPSSSHGDPPVAEQLRACFRVSC*YIVCSQ Trigger: CTGACTGCATACAATATACAAACAGGATACCCTAAA...ACAGGCTCTGAGCTGCTCAGCTACTGGAGGGTCTCCATGAGATGAAGAAGGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS CAA 90 bp | TGCAGTCAGCTCTTCATAATCACTGCTGGCAGTGGAGTGCTTTTCTaGGCCAACGACGGACTGTGCGGTAGCTCTCTTGAGGTTTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: CSQLFIITAGSGVLF*ANDGLCGSSLEVLF Trigger: GAACAAAACCTCAAGAGAGCTACCGCACAGTCCGTCGTTGGCCAAGAAAAGCACTCCACTGCCAGCAGTGATTATGAAGAGCTGACTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS CCA 72 bp | CAGCGAATTGTAGGTTGGTGTCTGGCTCTCTTGGCTTaGAACCTTGGCGCTCTCAATAACAGGTTCCTCACA | + |
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Preference number: 6 (lower is better) Translates to: QRIVGWCLALLA*NLGALNNRFLT Trigger: TGTGAGGAACCTGTTATTGAGAGCGCCAAGGTTCCAAGCCAAGAGAGCCAGACACCAACCTACAATTCGCTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS CAA 72 bp | TTTTCTTGGCCAACGACGGACTGTGCGGTAGCTCTCTaGAGGTTTTGTTCGCATAACTCACTCTTCTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: FSWPTTDCAVAL*RFCSHNSLFSV Trigger: GACTGAGAAGAGTGAGTTATGCGAACAAAACCTCAAGAGAGCTACCGCACAGTCCGTCGTTGGCCAAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS CCA 72 bp | GTATATTGTATGCAGTCAGCTCTTCATAATCACTGCTaGCAGTGGAGTGCTTTTCTTGGCCAACGACGGACT | + |
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Preference number: 6 (lower is better) Translates to: VYCMQSALHNHC*QWSAFLGQRRT Trigger: AGTCCGTCGTTGGCCAAGAAAAGCACTCCACTGCCAGCAGTGATTATGAAGAGCTGACTGCATACAATATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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| CDS GCA 72 bp | TTTGTATATTGTATGCAGTCAGCTCTTCATAATCACTaGTGGCAGTGGAGTGCTTTTCTTGGCCAACGACGG | + |
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Preference number: 6 (lower is better) Translates to: FVYCMQSALHNH*WQWSAFLGQRR Trigger: CCGTCGTTGGCCAAGAAAAGCACTCCACTGCCAGCAGTGATTATGAAGAGCTGACTGCATACAATATACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102861.8 ENSMUST00000102862.4 |
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