Pregenerated sensors for TEX47 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040514Ensembl transcript IDs: ENSMUST00000088796.3, ENSMUST00000159546.2, ENSMUST00000160634.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATGCCTaGCTGAACATGCGTTCTTTCACCCTCCTGCTCTGGTGCCATCTT | + |
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Preference number: 1 (lower is better) Translates to: QEFMVLSPSWLLFYA*LNMRSFTLLLWCHL Trigger: AAGATGGCACCAGAGCAGGAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR TCA 90 bp | AATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATGCCTGGCTaGACATGCGTTCTTTCACCCTCCTGCTCTGGTGCCATCTTCAAT | + |
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Preference number: 1 (lower is better) Translates to: NLWSCPLPGSCSMPG*TCVLSPSCSGAIFN Trigger: ATTGAAGATGGCACCAGAGCAGGAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR CCA 90 bp | CTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTaGCTCCTGTTCTATGCCTGGCTGAACATGCGTTCTTTCACCCTC | + |
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Preference number: 1 (lower is better) Translates to: LKHKEIQEFMVLSPS*LLFYAWLNMRSFTL Trigger: GAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR CCA 90 bp | GATTTAGCCTTGGAGATGCACAGCATCATTCTTGTCCTACTCTGCTaGTTAAAGCAGTCACAAAAAGCTGTGCAATTTGAAGCACAAAGC | + |
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Preference number: 1 (lower is better) Translates to: DLALEMHSIILVLLC*LKQSQKAVQFEAQS Trigger: GCTTTGTGCTTCAAATTGCACAGCTTTTTGTGACTGCTTTAACCAGCAGAGTAGGACAAGAATGATGCTGTGCATCTCCAAGGCTAAATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CCA 90 bp | AGAATGCCATCTGGAAACTGCTTTAAGTATTCACAGCATAGTGCCTaGATTCTAAGAGCTCAGGTTCAAATGAACAAAGCCAGGCACTTG | + |
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Preference number: 1 (lower is better) Translates to: RMPSGNCFKYSQHSA*ILRAQVQMNKARHL Trigger: CAAGTGCCTGGCTTTGTTCATTTGAACCTGAGCTCTTAGAATCCAGGCACTATGCTGTGAATACTTAAAGCAGTTTCCAGATGGCATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR GCA 90 bp | TTCGATTTAGCCTTGGAGATGCACAGCATCATTCTTGTCCTACTCTaGTGGTTAAAGCAGTCACAAAAAGCTGTGCAATTTGAAGCACAA | + |
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Preference number: 1 (lower is better) Translates to: FDLALEMHSIILVLL*WLKQSQKAVQFEAQ Trigger: TTGTGCTTCAAATTGCACAGCTTTTTGTGACTGCTTTAACCAGCAGAGTAGGACAAGAATGATGCTGTGCATCTCCAAGGCTAAATCGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR GCA 90 bp | CACACTTGCCACTGTTGGGGTATCCAGCCAACTGCAGTGATTGGATaGCTAGTAAGTGTTTACTTTGTGACATCTAGTAATATACATAAA | + |
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Preference number: 1 (lower is better) Translates to: HTCHCWGIQPTAVIG*LVSVYFVTSSNIHK Trigger: TTTATGTATATTACTAGATGTCACAAAGTAAACACTTACTAGGCATCCAATCACTGCAGTTGGCTGGATACCCCAACAGTGGCAAGTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CCA 90 bp | AGCTTCATAATAAGTTCAGTACTACTGATGAGACAGGCCAGAACATaGGTACTTCAGGGCTGTGTTCAGAAGTTTAGCTTCATTTTCTTT | + |
|
Preference number: 1 (lower is better) Translates to: SFIISSVLLMRQART*VLQGCVQKFSFIFF Trigger: AAAGAAAATGAAGCTAAACTTCTGAACACAGCCCTGAAGTACCCATGTTCTGGCCTGTCTCATCAGTAGTACTGAACTTATTATGAAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR GCA 90 bp | CTGCACCATTTCTACTGCCTGACAGATGTCTGTCATAAAGATGAGTaGTTGGGTAATTCTTGTTGTTTGATTATGCTTTCTAGTTATTTC | + |
|
Preference number: 1 (lower is better) Translates to: LHHFYCLTDVCHKDE*LGNSCCLIMLSSYF Trigger: GAAATAACTAGAAAGCATAATCAAACAACAAGAATTACCCAAGCACTCATCTTTATGACAGACATCTGTCAGGCAGTAGAAATGGTGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR TCA 90 bp | CAGATGTCTGTCATAAAGATGAGTGCTTGGGTAATTCTTGTTGTTTaGTTATGCTTTCTAGTTATTTCACAAAACCCTTGTGTTGTTCAG | + |
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Preference number: 1 (lower is better) Translates to: QMSVIKMSAWVILVV*LCFLVISQNPCVVQ Trigger: CTGAACAACACAAGGGTTTTGTGAAATAACTAGAAAGCATAATCAAACAACAAGAATTACCCAAGCACTCATCTTTATGACAGACATCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CAA 90 bp | TCTTACTCAGCATCCAGCGATTGGTGCTTCCTGCCAGCTGGTCGCTaGCTGAGAATGCCATCTGGAAACTGCTTTAAGTATTCACAGCAT | + |
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Preference number: 2 (lower is better) Translates to: SYSASSDWCFLPAGR*LRMPSGNCFKYSQH Trigger: ATGCTGTGAATACTTAAAGCAGTTTCCAGATGGCATTCTCAGCAAGCGACCAGCTGGCAGGAAGCACCAATCGCTGGATGCTGAGTAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGAGGAGTACATCTCTATCCTATACAGTGTCAACTAGTCTTCCTTGTAATGTGCTTCCTGCCAGCTaGTCGCTTGCTGAGAATGCC | + |
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Preference number: 2 (lower is better) Translates to: PRRSTSLSYTVSTSLPCNVLPAS*SLAENA Trigger: GGCATTCTCAGCAAGCGACCAGCTGGCAGGAAGCAC...ATTACAAGGAAGACTAGTTGACACTGTATAGGATAGAGATGTACTCCTCCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCTTCACCCTCCTGCTCTaGTGCCATCTTCAATGCTTC | + |
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Preference number: 2 (lower is better) Translates to: CLKHKEIQEFMVLSPSWLFTLLL*CHLQCF Trigger: GAAGCATTGAAGATGGCACCAGAGCAGGAGGGTGAA...GAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR-3UTR TCA 90 bp | AAAGCCAGGCACTTGGCATTTCGATTTAGCCTTGGAGATGCACAGCATCATTCTACCATTTCTACTGCCTaGCAGATGTCTGTCATAAAG | + |
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Preference number: 2 (lower is better) Translates to: KARHLAFRFSLGDAQHHSTISTA*QMSVIK Trigger: CTTTATGACAGACATCTGTCAGGCAGTAGAAATGGT...AGAATGATGCTGTGCATCTCCAAGGCTAAATCGAAATGCCAAGTGCCTGGCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTTTGCAAGCATATTCACCCCGTCAATAAGATGCTGTCTGACAGCTCATACACTGCACCATTTCTACTaGCTGACAGATGTCTGTCAT | + |
|
Preference number: 2 (lower is better) Translates to: LFASIFTPSIRCCLTAHTLHHFY*LTDVCH Trigger: ATGACAGACATCTGTCAGGCAGTAGAAATGGTGCAG...TGTATGAGCTGTCAGACAGCATCTTATTGACGGGGTGAATATGCTTGCAAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGAGGAGTACATCTCTATCCTATACAGTGTCAACTAGTCTTCCTTGTAATACAAAGCCAGGCACTTaGCATTTCGATTTAGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: PRRSTSLSYTVSTSLPCNTKPGT*HFDLAL Trigger: CAAGGCTAAATCGAAATGCCAAGTGCCTGGCTTTGT...ATTACAAGGAAGACTAGTTGACACTGTATAGGATAGAGATGTACTCCTCCTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR-3UTR CCA 90 bp | CTAAGAGCTCAGGTTCAAATGAACAAAGCCAGGCACTTGGCATTTCGATTTAGCTATTCACTTAGGTTCTaGAAGCTCTACCTCTTCTTA | + |
|
Preference number: 2 (lower is better) Translates to: LRAQVQMNKARHLAFRFSYSLRF*KLYLFL Trigger: TAAGAAGAGGTAGAGCTTCCAGAACCTAAGTGAATA...GCTAAATCGAAATGCCAAGTGCCTGGCTTTGTTCATTTGAACCTGAGCTCTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CCA 72 bp | ATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATGCCTaGCTGAACATGCGTTCTTTCACCCTCCTGCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: MVLSPSWLLFYA*LNMRSFTLLLW Trigger: CCAGAGCAGGAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR CCA 72 bp | TTACTCAGCATCCAGCGATTGGTGCTTCCTGCCAGCTaGTCGCTTGCTGAGAATGCCATCTGGAAACTGCTT | + |
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Preference number: 3 (lower is better) Translates to: LLSIQRLVLPAS*SLAENAIWKLL Trigger: AAGCAGTTTCCAGATGGCATTCTCAGCAAGCGACCAGCTGGCAGGAAGCACCAATCGCTGGATGCTGAGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR TCA 72 bp | CCAGCGATTGGTGCTTCCTGCCAGCTGGTCGCTTGCTaGGAATGCCATCTGGAAACTGCTTTAAGTATTCAC | + |
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Preference number: 3 (lower is better) Translates to: PAIGASCQLVAC*ECHLETALSIH Trigger: GTGAATACTTAAAGCAGTTTCCAGATGGCATTCTCAGCAAGCGACCAGCTGGCAGGAAGCACCAATCGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR GCA 72 bp | ATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATaGCTGGCTGAACATGCGTTCTTTCACCCTCCTGCT | + |
|
Preference number: 3 (lower is better) Translates to: IYGLVPFLAPVL*LAEHAFFHPPA Trigger: AGCAGGAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR GCA 72 bp | CCAGCTGGTCGCTTGCTGAGAATGCCATCTGGAAACTaGTTTAAGTATTCACAGCATAGTGCCTGGATTCTA | + |
|
Preference number: 3 (lower is better) Translates to: PAGRLLRMPSGN*FKYSQHSAWIL Trigger: TAGAATCCAGGCACTATGCTGTGAATACTTAAAGCAGTTTCCAGATGGCATTCTCAGCAAGCGACCAGCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR GCA 72 bp | GAGACACACTTGCCACTGTTGGGGTATCCAGCCAACTaGAGTGATTGGATGCCTAGTAAGTGTTTACTTTGT | + |
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Preference number: 3 (lower is better) Translates to: ETHLPLLGYPAN*SDWMPSKCLLC Trigger: ACAAAGTAAACACTTACTAGGCATCCAATCACTGCAGTTGGCTGGATACCCCAACAGTGGCAAGTGTGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CCA 72 bp | AAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTaGCTCCTGTTCTATGCCTGGCTGAACATGCGTTCT | + |
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Preference number: 3 (lower is better) Translates to: KEIQEFMVLSPS*LLFYAWLNMRS Trigger: AGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR GCA 72 bp | GTGCTTTTTGCAAGCATATTCACCCCGTCAATAAGATaGTGTCTGACAGCTCATACACACACACTGTTCACT | + |
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Preference number: 3 (lower is better) Translates to: VLFASIFTPSIR*CLTAHTHTLFT Trigger: AGTGAACAGTGTGTGTGTATGAGCTGTCAGACAGCATCTTATTGACGGGGTGAATATGCTTGCAAAAAGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CCA 72 bp | ATAAGTTCAGTACTACTGATGAGACAGGCCAGAACATaGGTACTTCAGGGCTGTGTTCAGAAGTTTAGCTTC | + |
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Preference number: 3 (lower is better) Translates to: ISSVLLMRQART*VLQGCVQKFSF Trigger: GAAGCTAAACTTCTGAACACAGCCCTGAAGTACCCATGTTCTGGCCTGTCTCATCAGTAGTACTGAACTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR GCA 72 bp | CACTGTTGGGGTATCCAGCCAACTGCAGTGATTGGATaGCTAGTAAGTGTTTACTTTGTGACATCTAGTAAT | + |
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Preference number: 3 (lower is better) Translates to: HCWGIQPTAVIG*LVSVYFVTSSN Trigger: ATTACTAGATGTCACAAAGTAAACACTTACTAGGCATCCAATCACTGCAGTTGGCTGGATACCCCAACAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR TCA 72 bp | CATATCATAATTCATAATTGTTTCAGGTCTGTAATTTaGGCAGGATTCCCAGGAGGAGTACATCTCTATCCT | + |
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Preference number: 3 (lower is better) Translates to: HIIIHNCFRSVI*AGFPGGVHLYP Trigger: AGGATAGAGATGTACTCCTCCTGGGAATCCTGCTCAAATTACAGACCTGAAACAATTATGAATTATGATATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR TCA 90 bp | TCCTGGCTCCTGTTCTATGCCTGGCTGAACATGCGTTCTTTCACCCTCCTGCTCACTAGAAACATCCTGTaGAGGAGGAATTTCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: SWLLFYAWLNMRSFTLLLTRNIL*RRNFFS Trigger: GCTAAAGAAATTCCTCCTTCACAGGATGTTTCTAGT...GAGCAGGAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | CCACTGTTGGGGTATCCAGCCAACTGCAGTGATTGGATGCCTAGTAAGTGTTTATGGTACGAGGAACCTTaGGCAGAAGAAGAGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: PLLGYPANCSDWMPSKCLWYEEP*AEEEDP Trigger: TGGATCCTCTTCTTCTGCCCAAGGTTCCTCGTACCA...TAAACACTTACTAGGCATCCAATCACTGCAGTTGGCTGGATACCCCAACAGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR TCA 90 bp | CCATCTTCAATGCTTCTGAATGTTGTAGACATCCTCTCCAAATCAACTCTCCCCAGATATGCCACTGCATaGACAGCCTCGTGGGGATGT | + |
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Preference number: 4 (lower is better) Translates to: PSSMLLNVVDILSKSTLPRYATA*TASWGC Trigger: ACATCCCCACGAGGCTGTTCATGCAGTGGCATATCT...GGGGAGAGTTGATTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | GAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATGCCTGGGCTCAAGAAAGACGCTaGGTCCATGAATTCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: EIQEFMVLSPSWLLFYAWAQERR*VHEFFS Trigger: GCTGAAGAATTCATGGACCCAGCGTCTTTCTTGAGC...CCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR TCA 90 bp | AAGTTCAGTACTACTGATGAGACAGGCCAGAACATGGGTACTTCAGGGCTGTGTAGAAGAGGATCCACTTaGAATTGCTTTTTGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: KFSTTDETGQNMGTSGLCRRGST*NCFLLP Trigger: GGGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCT...ACACAGCCCTGAAGTACCCATGTTCTGGCCTGTCTCATCAGTAGTACTGAACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR TCA 90 bp | AAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATGCCTTGGAGTGCCAGTTTGTaGGTCATGGTGAGGAATTCT | + |
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Preference number: 4 (lower is better) Translates to: KKFRNLWSCPLPGSCSMPWSASL*VMVRNS Trigger: AGAATTCCTCACCATGACTCACAAACTGGCACTCCA...AGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | TGCCTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCTGGTACGAGGAACCTTaGGCAGAAGAAGAGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: CLKHKEIQEFMVLSPSWLWYEEP*AEEEDP Trigger: TGGATCCTCTTCTTCTGCCCAAGGTTCCTCGTACCA...GAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR TCA 90 bp | CCATCTTCAATGCTTCTGAATGTTGTAGACATCCTCTCCAAATCAACTCTCCCCAGAAGAGGATCCACTTaGAATTGCTTTTTGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: PSSMLLNVVDILSKSTLPRRGST*NCFLLP Trigger: GGGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCT...GGGGAGAGTTGATTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR GCA 90 bp | CTAAGAGCTCAGGTTCAAATGAACAAAGCCAGGCACTTGGCATTTCGATTTAGCTTGATTGCAGAGATATaGCACTGCATGAACAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LRAQVQMNKARHLAFRFSLIAEI*HCMNSL Trigger: GAGGCTGTTCATGCAGTGGCATATCTCTGCAATCAA...GCTAAATCGAAATGCCAAGTGCCTGGCTTTGTTCATTTGAACCTGAGCTCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | CTAAGAGCTCAGGTTCAAATGAACAAAGCCAGGCACTTGGCATTTCGATTTAGCTGGGTCTGTTATACATaGTCAAGAAAGACGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LRAQVQMNKARHLAFRFSWVCYT*SRKTLG Trigger: ACCCAGCGTCTTTCTTGAGCATGTATAACAGACCCA...GCTAAATCGAAATGCCAAGTGCCTGGCTTTGTTCATTTGAACCTGAGCTCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR CCA 90 bp | AAAGCCAGGCACTTGGCATTTCGATTTAGCCTTGGAGATGCACAGCATCATTCTGTGCAGAAAAGTACTTaGGTATATGAGCATGAGACC | + |
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Preference number: 4 (lower is better) Translates to: KARHLAFRFSLGDAQHHSVQKST*VYEHET Trigger: GGTCTCATGCTCATATACCCAAGTACTTTTCTGCAC...AGAATGATGCTGTGCATCTCCAAGGCTAAATCGAAATGCCAAGTGCCTGGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR CCA 90 bp | CCATCTTCAATGCTTCTGAATGTTGTAGACATCCTCTCCAAATCAACTCTCCCCGGAAGAGTGTGCCATTaGAACTCTCAAGAATGTGCA | + |
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Preference number: 4 (lower is better) Translates to: PSSMLLNVVDILSKSTLPGRVCH*NSQECA Trigger: TGCACATTCTTGAGAGTTCCAATGGCACACTCTTCC...GGGGAGAGTTGATTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | GGTTGCAAGTTTCTTAAGGGTCTAAGTGTTAGAAATGATCCACCCTCAAACACCGCTCAAGAAAGACGCTaGGTCCATGAATTCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: GCKFLKGLSVRNDPPSNTAQERR*VHEFFS Trigger: GCTGAAGAATTCATGGACCCAGCGTCTTTCTTGAGC...GGTGTTTGAGGGTGGATCATTTCTAACACTTAGACCCTTAAGAAACTTGCAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| 3UTR CAA 72 bp | AAATTATACAAGGTAGGTAATGTGATGGAGACACACTaGCCACTGTTGGGGTATCCAGCCAACTGCAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: KLYKVGNVMETH*PLLGYPANCSD Trigger: ATCACTGCAGTTGGCTGGATACCCCAACAGTGGCAAGTGTGTCTCCATCACATTACCTACCTTGTATAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR TCA 90 bp | CTGGTCAACTTAGCTAACTTTAGAAAGTGCTTTTTGCAAGCATATTCACCCCGTTGGAGTGCCAGTTTGTaGGTCATGGTGAGGAATTCT | + |
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Preference number: 4 (lower is better) Translates to: LVNLANFRKCFLQAYSPRWSASL*VMVRNS Trigger: AGAATTCCTCACCATGACTCACAAACTGGCACTCCA...ACGGGGTGAATATGCTTGCAAAAAGCACTTTCTAAAGTTAGCTAAGTTGACCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | CCTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGAATCCGGAAGAGTGTaGCATTGGAACTCTCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: PKTQRNSGIYGLVPFLAPESGRV*HWNSQE Trigger: TTCTTGAGAGTTCCAATGGCACACTCTTCCGGATTC...AGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR GCA 90 bp | CCTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTTTGATTGCAGAGATATaGCACTGCATGAACAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PKTQRNSGIYGLVPFLAPLIAEI*HCMNSL Trigger: GAGGCTGTTCATGCAGTGGCATATCTCTGCAATCAA...AGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR GCA 90 bp | CTAAGAGCTCAGGTTCAAATGAACAAAGCCAGGCACTTGGCATTTCGATTTAGCCTTGTAAAGTTGGAGTaGCAGTTTGTGAGTCATGGT | + |
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Preference number: 4 (lower is better) Translates to: LRAQVQMNKARHLAFRFSLVKLE*QFVSHG Trigger: ACCATGACTCACAAACTGGCACTCCAACTTTACAAG...GCTAAATCGAAATGCCAAGTGCCTGGCTTTGTTCATTTGAACCTGAGCTCTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | GGTGCCATCTTCAATGCTTCTGAATGTTGTAGACATCCTCTCCAAATCAACTCTTGGGTCTGTTATACATaGTCAAGAAAGACGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: GAIFNASECCRHPLQINSWVCYT*SRKTLG Trigger: ACCCAGCGTCTTTCTTGAGCATGTATAACAGACCCA...AGAGTTGATTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGGCACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | CCATCTTCAATGCTTCTGAATGTTGTAGACATCCTCTCCAAATCAACTCTCCCCGTGCAGAAAAGTACTTaGGTATATGAGCATGAGACC | + |
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Preference number: 4 (lower is better) Translates to: PSSMLLNVVDILSKSTLPVQKST*VYEHET Trigger: GGTCTCATGCTCATATACCCAAGTACTTTTCTGCAC...GGGGAGAGTTGATTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | AAAGCCAGGCACTTGGCATTTCGATTTAGCCTTGGAGATGCACAGCATCATTCTCTTGATAATTTGTTCTaGAAGAATGAGTTCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: KARHLAFRFSLGDAQHHSLDNLF*KNEFRG Trigger: GCCCCTGAACTCATTCTTCCAGAACAAATTATCAAG...AGAATGATGCTGTGCATCTCCAAGGCTAAATCGAAATGCCAAGTGCCTGGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | ACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTACTTGTAAAGTTGGAGTaGCAGTTTGTGAGTCATGGT | + |
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Preference number: 4 (lower is better) Translates to: TQRNSGIYGLVPFLAPVLLVKLE*QFVSHG Trigger: ACCATGACTCACAAACTGGCACTCCAACTTTACAAG...TAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR TCA 90 bp | CCCAGGAGGAGTACATCTCTATCCTATACAGTGTCAACTAGTCTTCCTTGTAATACTAGAAACATCCTGTaGAGGAGGAATTTCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: PRRSTSLSYTVSTSLPCNTRNIL*RRNFFS Trigger: GCTAAAGAAATTCCTCCTTCACAGGATGTTTCTAGT...ATTACAAGGAAGACTAGTTGACACTGTATAGGATAGAGATGTACTCCTCCTGGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | TGCCTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTTGAAATTGCTTTTTaGTGCCCTTCCGATTATGGA | + |
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Preference number: 4 (lower is better) Translates to: CLKHKEIQEFMVLSPSWLLEIAF*CPSDYG Trigger: TCCATAATCGGAAGGGCAGCAAAAAGCAATTTCAAG...GAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CCA 90 bp | ACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTACTTGATAATTTGTTCTaGAAGAATGAGTTCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: TQRNSGIYGLVPFLAPVLLDNLF*KNEFRG Trigger: GCCCCTGAACTCATTCTTCCAGAACAAATTATCAAG...TAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR GCA 90 bp | CTGGTCAACTTAGCTAACTTTAGAAAGTGCTTTTTGCAAGCATATTCACCCCGTCTTGAAATTGCTTTTTaGTGCCCTTCCGATTATGGA | + |
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Preference number: 4 (lower is better) Translates to: LVNLANFRKCFLQAYSPRLEIAF*CPSDYG Trigger: TCCATAATCGGAAGGGCAGCAAAAAGCAATTTCAAG...ACGGGGTGAATATGCTTGCAAAAAGCACTTTCTAAAGTTAGCTAAGTTGACCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | TGCCTAAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCGAACTCTCAAGAATGTaGAGAAAAGTACTTGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: CLKHKEIQEFMVLSPSWLELSRM*RKVLGY Trigger: ATACCCAAGTACTTTTCTGCACATTCTTGAGAGTTC...GAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTTAGGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| 3UTR CAA 72 bp | TACTGCCTGACAGATGTCTGTCATAAAGATGAGTGCTaGGGTAATTCTTGTTGTTTGATTATGCTTTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: YCLTDVCHKDEC*GNSCCLIMLSS Trigger: ACTAGAAAGCATAATCAAACAACAAGAATTACCCAAGCACTCATCTTTATGACAGACATCTGTCAGGCAGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR GCA 90 bp | TATTCACTTAGGTTCTGGAAGCTCTACCTCTTCTTATTCTACCATTTACATTGTGAACTCTCAAGAATGTaGAGAAAAGTACTTGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: YSLRFWKLYLFLFYHLHCELSRM*RKVLGY Trigger: ATACCCAAGTACTTTTCTGCACATTCTTGAGAGTTC...ACAATGTAAATGGTAGAATAAGAAGAGGTAGAGCTTCCAGAACCTAAGTGAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR CAA 90 bp | TCCTGGCTCCTGTTCTATGCCTGGCTGAACATGCGTTCTTTCACCCTCCTGCTCCGGAAGAGTGTGCCATaGGAACTCTCAAGAATGTGC | + |
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Preference number: 5 (lower is better) Translates to: SWLLFYAWLNMRSFTLLLRKSVP*ELSRMC Trigger: GCACATTCTTGAGAGTTCCAATGGCACACTCTTCCG...GAGCAGGAGGGTGAAAGAACGCATGTTCAGCCAGGCATAGAACAGGAGCCAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CAA 90 bp | GAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTCTATGCCTGGGCAAGTTGGTGTAAGTaGTCACCTGGACCTTTCGCG | + |
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Preference number: 5 (lower is better) Translates to: EIQEFMVLSPSWLLFYAWASWCK*SPGPFA Trigger: CGCGAAAGGTCCAGGTGACAACTTACACCAACTTGC...CCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CAA 90 bp | CCACTGTTGGGGTATCCAGCCAACTGCAGTGATTGGATGCCTAGTAAGTGTTTAGCAAGTTGGTGTAAGTaGTCACCTGGACCTTTCGCG | + |
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Preference number: 5 (lower is better) Translates to: PLLGYPANCSDWMPSKCLASWCK*SPGPFA Trigger: CGCGAAAGGTCCAGGTGACAACTTACACCAACTTGC...TAAACACTTACTAGGCATCCAATCACTGCAGTTGGCTGGATACCCCAACAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS CCA 90 bp | TGTGCTTCTCTTCCTGAAGGTGCAGGTAATTGGTACGAGGAACCTTaGGCAGAAGAAGAGGATCCACTTGAAATTGCTTTTTGCTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: CASLPEGAGNWYEEP*AEEEDPLEIAFCCP Trigger: AGGGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCTTCTGCCCAAGGTTCCTCGTACCAATTACCTGCACCTTCAGGAAGAGAAGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CCA 90 bp | TCTTTAGCTGTAGTCTGTGCTTCTCTTCCTGAAGGTGCAGGTAATTaGTACGAGGAACCTTGGGCAGAAGAAGAGGATCCACTTGAAATT | + |
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Preference number: 5 (lower is better) Translates to: SLAVVCASLPEGAGN*YEEPWAEEEDPLEI Trigger: AATTTCAAGTGGATCCTCTTCTTCTGCCCAAGGTTCCTCGTACCAATTACCTGCACCTTCAGGAAGAGAAGCACAGACTACAGCTAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS-3UTR CAA 90 bp | AAGTTCAGTACTACTGATGAGACAGGCCAGAACATGGGTACTTCAGGGCTGTGTAAGAAGAGGATCCACTaGAAATTGCTTTTTGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: KFSTTDETGQNMGTSGLCKKRIH*KLLFAA Trigger: GGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCTT...ACACAGCCCTGAAGTACCCATGTTCTGGCCTGTCTCATCAGTAGTACTGAACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS-3UTR CAA 90 bp | CCCAGGAGGAGTACATCTCTATCCTATACAGTGTCAACTAGTCTTCCTTGTAATAGGATCCACTTGAAATaGCTTTTTGCTGCCCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: PRRSTSLSYTVSTSLPCNRIHLK*LFAALP Trigger: CGGAAGGGCAGCAAAAAGCAATTTCAAGTGGATCCT...ATTACAAGGAAGACTAGTTGACACTGTATAGGATAGAGATGTACTCCTCCTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160634.2 |
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| CDS GCA 90 bp | GAAACAGTTGCTCATAGTACTCAGAGATGTCCTTTTTCTCCGTGTTaGCTTGTATGTAGCCCACTAGAAACATCCTGTGAAGGAGGAATT | + |
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Preference number: 5 (lower is better) Translates to: ETVAHSTQRCPFSPC*LVCSPLETSCEGGI Trigger: AATTCCTCCTTCACAGGATGTTTCTAGTGGGCTACATACAAGGCAACACGGAGAAAAAGGACATCTCTGAGTACTATGAGCAACTGTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CCA 90 bp | AAATACTTGATAATTTGTTCTGGAAGAATGAGTTCAGGGGCAAGTTaGTGTAAGTTGTCACCTGGACCTTTCGCGCCCAATTTCACTGTC | + |
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Preference number: 5 (lower is better) Translates to: KYLIICSGRMSSGAS*CKLSPGPFAPNFTV Trigger: GACAGTGAAATTGGGCGCGAAAGGTCCAGGTGACAACTTACACCAACTTGCCCCTGAACTCATTCTTCCAGAACAAATTATCAAGTATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS-3UTR CAA 90 bp | AAAACACAAAGAAATTCAGGAATTTATGGTCTTGTCCCCTTCCTGGCTCCTGTTAGGATCCACTTGAAATaGCTTTTTGCTGCCCTTCCG | + |
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Preference number: 5 (lower is better) Translates to: KTQRNSGIYGLVPFLAPVRIHLK*LFAALP Trigger: CGGAAGGGCAGCAAAAAGCAATTTCAAGTGGATCCT...AACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS-3UTR CAA 90 bp | GGTGCCATCTTCAATGCTTCTGAATGTTGTAGACATCCTCTCCAAATCAACTCTAAGAAGAGGATCCACTaGAAATTGCTTTTTGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: GAIFNASECCRHPLQINSKKRIH*KLLFAA Trigger: GGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCTT...AGAGTTGATTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGGCACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088796.3 |
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| CDS CCA 72 bp | GTAGTCTGTGCTTCTCTTCCTGAAGGTGCAGGTAATTaGTACGAGGAACCTTGGGCAGAAGAAGAGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: VVCASLPEGAGN*YEEPWAEEEDP Trigger: TGGATCCTCTTCTTCTGCCCAAGGTTCCTCGTACCAATTACCTGCACCTTCAGGAAGAGAAGCACAGACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CAA 72 bp | TCTGGAAGAATGAGTTCAGGGGCAAGTTGGTGTAAGTaGTCACCTGGACCTTTCGCGCCCAATTTCACTGTC | + |
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Preference number: 6 (lower is better) Translates to: SGRMSSGASWCK*SPGPFAPNFTV Trigger: GACAGTGAAATTGGGCGCGAAAGGTCCAGGTGACAACTTACACCAACTTGCCCCTGAACTCATTCTTCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CCA 72 bp | CTTCCTGAAGGTGCAGGTAATTGGTACGAGGAACCTTaGGCAGAAGAAGAGGATCCACTTGAAATTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: LPEGAGNWYEEP*AEEEDPLEIAF Trigger: AAAAGCAATTTCAAGTGGATCCTCTTCTTCTGCCCAAGGTTCCTCGTACCAATTACCTGCACCTTCAGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CCA 72 bp | ATAATTTGTTCTGGAAGAATGAGTTCAGGGGCAAGTTaGTGTAAGTTGTCACCTGGACCTTTCGCGCCCAAT | + |
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Preference number: 6 (lower is better) Translates to: IICSGRMSSGAS*CKLSPGPFAPN Trigger: ATTGGGCGCGAAAGGTCCAGGTGACAACTTACACCAACTTGCCCCTGAACTCATTCTTCCAGAACAAATTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CAA 72 bp | AGGAACCTTGGGCAGAAGAAGAGGATCCACTTGAAATaGCTTTTTGCTGCCCTTCCGATTATGGACCATGAA | + |
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Preference number: 6 (lower is better) Translates to: RNLGQKKRIHLK*LFAALPIMDHE Trigger: TTCATGGTCCATAATCGGAAGGGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCTTCTGCCCAAGGTTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS GCA 72 bp | GCTCATAGTACTCAGAGATGTCCTTTTTCTCCGTGTTaGCTTGTATGTAGCCCACTAGAAACATCCTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: AHSTQRCPFSPC*LVCSPLETSCE Trigger: TTCACAGGATGTTTCTAGTGGGCTACATACAAGGCAACACGGAGAAAAAGGACATCTCTGAGTACTATGAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS GCA 72 bp | ATCCGGAAGAGTGTGCCATTGGAACTCTCAAGAATGTaGAGAAAAGTACTTGGGTATATGAGCATGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: IRKSVPLELSRM*RKVLGYMSMRP Trigger: AGGTCTCATGCTCATATACCCAAGTACTTTTCTGCACATTCTTGAGAGTTCCAATGGCACACTCTTCCGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS GCA 72 bp | CATGGGCAACATAATCTAGAAGAATCCGGAAGAGTGTaGCATTGGAACTCTCAAGAATGTGCAGAAAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: HGQHNLEESGRV*HWNSQECAEKY Trigger: GTACTTTTCTGCACATTCTTGAGAGTTCCAATGGCACACTCTTCCGGATTCTTCTAGATTATGTTGCCCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CCA 72 bp | CAACATAATCTAGAAGAATCCGGAAGAGTGTGCCATTaGAACTCTCAAGAATGTGCAGAAAAGTACTTGGGT | + |
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Preference number: 6 (lower is better) Translates to: QHNLEESGRVCH*NSQECAEKYLG Trigger: ACCCAAGTACTTTTCTGCACATTCTTGAGAGTTCCAATGGCACACTCTTCCGGATTCTTCTAGATTATGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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| CDS CAA 72 bp | GACCTGTCACTGATTCGCCTAAATGATGTTTCAGAATaGACTGAAACAGTTGCTCATAGTACTCAGAGATGT | + |
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Preference number: 6 (lower is better) Translates to: DLSLIRLNDVSE*TETVAHSTQRC Trigger: ACATCTCTGAGTACTATGAGCAACTGTTTCAGTCAATTCTGAAACATCATTTAGGCGAATCAGTGACAGGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000088796.3 ENSMUST00000159546.2 ENSMUST00000160634.2 |
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