Pregenerated sensors for TEX46 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036921Ensembl transcript IDs: ENSMUST00000046647.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGCAACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGGCTACCTGTGCCTCCTCCTaGAGAAGTTCCGTTGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SNNKTKLIHRVKITPAEATCASS*RSSVVC Trigger: GCAGACAACGGAACTTCTCCAGGAGGAGGCACAGGT...AGCCTCTGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR GCA 90 bp | TACAGCAGCAACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGAATGTGGAGTCATaGCTTCTCGACCTGTGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: YSSNNKTKLIHRVKITPAENVES*LLDLCL Trigger: GAGGCACAGGTCGAGAAGGCATGACTCCACATTCTC...TGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTTGCTGCTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR TCA 90 bp | AACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGGCTAGCTCAGCTTCATCTCACTaGACATCAGCCGTTCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NNKTKLIHRVKITPAEASSASSH*TSAVQG Trigger: TCCTTGAACGGCTGATGTTCAGTGAGATGAAGCTGA...GCTAGCCTCTGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CCA 90 bp | TTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAACCAAGGCAGCTCCTATaGGGCCAGAAGAAGCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: FFFIKFAGSGILLQQQQQPRQLL*GQKKQG Trigger: TCCTTGCTTCTTCTGGCCCCATAGGAGCTGCCTTGG...TTGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CCA 90 bp | CTTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACATTTGGGATGGACTTCTaGAGCTGTTGTTGTTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LFLYKVRRLGYFVTAATTFGMDF*SCCCFC Trigger: GCAGAAACAACAACAGCTCCAGAAGTCCATCCCAAA...TGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CCA 90 bp | TTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAAATAAGGTGGAGAATGTaGAGTCATGCCTTCTCGACC | + |
|
Preference number: 4 (lower is better) Translates to: FFFIKFAGSGILLQQQQQIRWRM*SHAFST Trigger: GGTCGAGAAGGCATGACTCCACATTCTCCACCTTAT...TTGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR TCA 90 bp | TTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAACATATGACGAACACCTaGTTTTCCAAGGCTTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FFFIKFAGSGILLQQQQQHMTNT*FSKAFS Trigger: GCTGAAAGCCTTGGAAAATCAGGTGTTCGTCATATG...TTGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR TCA 90 bp | CTTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAACTCTTCCTTGTTTTTaGCGTTGTTTTTGGGATGGA | + |
|
Preference number: 4 (lower is better) Translates to: LFLYKVRRLGYFVTAATTTLPCF*RCFWDG Trigger: TCCATCCCAAAAACAACGTCAAAAACAAGGAAGAGT...TGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CCA 90 bp | TTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAAACGTTGTTTTTGGGATaGACTTCTGGAGCTGTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: FFFIKFAGSGILLQQQQQTLFLG*TSGAVV Trigger: AACAACAGCTCCAGAAGTCCATCCCAAAAACAACGT...TTGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS CCA 90 bp | AGGTGGAGAATGTGGAGTCATGCCTTCTCGACCTGTGCCTCCTCCTaGAGAAGTTCCGTTGTCTGCTGCTCCACCGGCGGCGATTTATTT | + |
|
Preference number: 5 (lower is better) Translates to: RWRMWSHAFSTCASS*RSSVVCCSTGGDLF Trigger: AAATAAATCGCCGCCGGTGGAGCAGCAGACAACGGAACTTCTCCAGGAGGAGGCACAGGTCGAGAAGGCATGACTCCACATTCTCCACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS GCA 90 bp | GGGGTGACGGTAGTACATTTAGATAAGGTGGAGAATGTGGAGTCATaGCTTCTCGACCTGTGCCTCCTCCTGGAGAAGTTCCGTTGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: GVTVVHLDKVENVES*LLDLCLLLEKFRCL Trigger: CAGACAACGGAACTTCTCCAGGAGGAGGCACAGGTCGAGAAGGCATGACTCCACATTCTCCACCTTATCTAAATGTACTACCGTCACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | AACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGGCTAGCCTTCTGGAGCTGTTGTaGTTTCTGCCTCCTCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: NNKTKLIHRVKITPAEASLLELL*FLPPPG Trigger: CCCAGGAGGAGGCAGAAACAACAACAGCTCCAGAAG...GCTAGCCTCTGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | AGCAACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGGCTGGGGAGGGAGCCAAATaGTGTTCTTGTTTGACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: SNNKTKLIHRVKITPAEAGEGAK*CSCLTS Trigger: GCTGGTCAAACAAGAACACAATTTGGCTCCCTCCCC...AGCCTCTGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | AACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGGCTAGCGGACTTCTGGAGCTGTaGTTGTTTCTGCCTCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: NNKTKLIHRVKITPAEASGLLEL*LFLPPP Trigger: AGGAGGAGGCAGAAACAACAACAGCTCCAGAAGTCC...GCTAGCCTCTGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | TTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAATGTTTGACCAGCCAGTaGCTCAGCAACAGCAGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: FFFIKFAGSGILLQQQQQCLTSQ*LSNSRR Trigger: CCTTCTGCTGTTGCTGAGCAACTGGCTGGTCAAACA...TTGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | TACAGCAGCAACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCATCCTTGTTTTTGACGTaGTTTTTGGGATGGACTTCT | + |
|
Preference number: 5 (lower is better) Translates to: YSSNNKTKLIHRVKITPASLFLT*FLGWTS Trigger: AGAAGTCCATCCCAAAAACAACGTCAAAAACAAGGA...TGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTTGCTGCTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | AGCAACAACAAAACCAAACTCATACACCGGGTGAAGATCACACCAGCAGAGGCTTTCTCCAACTCTTCCTaGTTTTTGACGTTGTTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: SNNKTKLIHRVKITPAEAFSNSS*FLTLFL Trigger: CAAAAACAACGTCAAAAACAAGGAAGAGTTGGAGAA...AGCCTCTGCTGGTGTGATCTTCACCCGGTGTATGAGTTTGGTTTTGTTGTTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | CTTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAAGCCAAATTGTGTTCTaGTTTGACCAGCCAGTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: LFLYKVRRLGYFVTAATTSQIVF*FDQPVA Trigger: AGCAACTGGCTGGTCAAACAAGAACACAATTTGGCT...TGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS-3UTR CAA 90 bp | CTTTTTCTTTATAAAGTTCGCAGGCTCGGGTATTTTGTTACAGCAGCAACAACAAACTCTTCCTTGTTTTaGACGTTGTTTTTGGGATGG | + |
|
Preference number: 5 (lower is better) Translates to: LFLYKVRRLGYFVTAATTNSSLF*TLFLGW Trigger: CCATCCCAAAAACAACGTCAAAAACAAGGAAGAGTT...TGTTGTTGCTGCTGTAACAAAATACCCGAGCCTGCGAACTTTATAAAGAAAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS CAA 72 bp | TCCTGGGGTGGGGAGGGAGCCAAATTGTGTTCTTGTTaGACCAGCCAGTTGCTCAGCAACAGCAGAAGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SWGGEGAKLCSC*TSQLLSNSRRR Trigger: CCTCCTTCTGCTGTTGCTGAGCAACTGGCTGGTCAAACAAGAACACAATTTGGCTCCCTCCCCACCCCAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS CAA 72 bp | CTCCTCCTGGGGTGGGGAGGGAGCCAAATTGTGTTCTaGTTTGACCAGCCAGTTGCTCAGCAACAGCAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: LLLGWGGSQIVF*FDQPVAQQQQK Trigger: CTTCTGCTGTTGCTGAGCAACTGGCTGGTCAAACAAGAACACAATTTGGCTCCCTCCCCACCCCAGGAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS CAA 90 bp | GGAGTCATGCCTTCTCGACCTGTGCCTCCTCCTGGAGAAGTTCCGTaGTCTGCTGCTCCACCGGCGGCGATTTATTTTATTCCATATGAC | + |
|
Preference number: 6 (lower is better) Translates to: GVMPSRPVPPPGEVP*SAAPPAAIYFIPYD Trigger: GTCATATGGAATAAAATAAATCGCCGCCGGTGGAGCAGCAGACAACGGAACTTCTCCAGGAGGAGGCACAGGTCGAGAAGGCATGACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS TCA 72 bp | ACACCTGATTTTCCAAGGCTTTCAGCTTCATCTCACTaGACATCAGCCGTTCAAGGACCTTATCCTGGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: TPDFPRLSASSH*TSAVQGPYPGG Trigger: CCCTCCAGGATAAGGTCCTTGAACGGCTGATGTTCAGTGAGATGAAGCTGAAAGCCTTGGAAAATCAGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS CCA 72 bp | TCCAACTCTTCCTTGTTTTTGACGTTGTTTTTGGGATaGACTTCTGGAGCTGTTGTTGTTTCTGCCTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SNSSLFLTLFLG*TSGAVVVSASS Trigger: GGAGGAGGCAGAAACAACAACAGCTCCAGAAGTCCATCCCAAAAACAACGTCAAAAACAAGGAAGAGTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||
| CDS CCA 72 bp | ATCTCACTGAACATCAGCCGTTCAAGGACCTTATCCTaGAGGGCGAAGCAAGCATTAATTTTCTCCAACTCT | + |
|
Preference number: 6 (lower is better) Translates to: ISLNISRSRTLS*RAKQALIFSNS Trigger: AGAGTTGGAGAAAATTAATGCTTGCTTCGCCCTCCAGGATAAGGTCCTTGAACGGCTGATGTTCAGTGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046647.3 |
||