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Pregenerated sensors for TEX44 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036574

Ensembl transcript IDs: ENSMUST00000046004.6

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGCCACCTGGGGAGCCTaGGTCAGGTGGATCCGGTGG +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGATWGA*VRWIRW
Trigger: CCACCGGATCCACCTGACCCAGGCTCCCCAGGTGGC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGGGCCCAGCGTGAGGTaGGATGATGGGCCAGGTAGC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGGPSVR*DDGPGS
Trigger: GCTACCTGGCCCATCATCTCACCTCACGCTGGGCCC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
58% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGGAGAGTGGGGTGGGCTaGCACCTGGGGAGCCTGGGT +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKESGVG*HLGSLG
Trigger: ACCCAGGCTCCCCAGGTGGCAGCCCACCCCACTCTC...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGATCTGGAGAGTGGGGTaGGCTGCCACCTGGGGAGCC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGIWRVG*AATWGA
Trigger: GGCTCCCCAGGTGGCAGCCCACCCCACTCTCCAGAT...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAGCCCGAGGCCAGAATaGCCACAGCCACACCCATGC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGSPRPE*PQPHPC
Trigger: GCATGGGTGTGGCTGTGGGCATTCTGGCCTCGGGCT...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGGGGTGGGCTGCCACCTaGGGAGCCTGGGTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGGWAAT*GAWVRW
Trigger: CCACCTGACCCAGGCTCCCCAGGTGGCAGCCCACCC...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGACTCCAGCAGGTGCGTaGCAGAGTGCAGGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKTPAGA*QSAGLS
Trigger: GCTCAGCCCTGCACTCTGTCACGCACCTGCTGGAGT...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGAAGCTGACCTGGCGCTaGGCAAGAGGCTGGCGACAG +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKKLTWR*ARGWRQ
Trigger: CTGTCGCCAGCCTCTTGCGCAGCGCCAGGTCAGCTT...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGACAGAGTGCAGGGCTaGGCCAGTTCCAGACATCAC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGDRVQG*ASSRHH
Trigger: GTGATGTCTGGAACTGGCTCAGCCCTGCACTCTGTC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGACAGACTCCAGCAGGTaGGTGACAGAGTGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGTDSSR*VTECRA
Trigger: AGCCCTGCACTCTGTCACGCACCTGCTGGAGTCTGT...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGCACCTGGTAGAAATCTaGAGAGTGGGGTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGHLVEI*RVGWAA
Trigger: GGCAGCCCACCCCACTCTCCAGATTTCTACCAGGTG...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGGATTGTCCTGGCCCTaGTGTGGAATATCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGGLSWP*CGISGL
Trigger: GAGCCCAGATATTCCACATCAGGGCCAGGACAATCC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGCCACAGCCACACCCATaGGTGTGGCTGTGTCTGACC +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLPQPHP*VWLCLT
Trigger: GGTCAGACACAGCCACACGCATGGGTGTGGCTGTGG...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGCCTGTCCCATCAAGGTaGCAGTCTGTATGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGPVPSR*QSVWRP
Trigger: AGGCCTCCATACAGACTGCCACCTTGATGGGACAGG...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGTCTTTTCCTGGGTCTaGGAGTCACTCGGGGAAACC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGVFSWV*ESLGET
Trigger: GGTTTCCCCGAGTGACTCCCAGACCCAGGAAAAGAC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGCCAGCAGGCTGGTCATaGAGCGCATGTAGTCGTTCT +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGPAGWS*SACSRS
Trigger: AGAACGACTACATGCGCTCCATGACCAGCCTGCTGG...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGCTTGTCCCATCAAGGTaGCAGTCTGTATGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGLVPSR*QSVWRP
Trigger: AGGCCTCCATACAGACTGCCACCTTGATGGGACAAG...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGTGATGGTGGAAATCTaGTTGGAGAGCAGGTCCTCA +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGVMVEI*LESRSS
Trigger: TGAGGACCTGCTCTCCAAGCAGATTTCCACCATCAC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGGTCCTGGCCCTGATGTaGAATATCTGGGCTCTCATC +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKVLALM*NIWALI
Trigger: GATGAGAGCCCAGATATTCCACATCAGGGCCAGGAC...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGGCTCCCACCGAAGTCTaGACATGTTCAGGCAGGTTA +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKAPTEV*TCSGRL
Trigger: TAACCTGCCTGAACATGTCCAGACTTCGGTGGGAGC...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGCATTTTGCTCTGTGGTaGTGGCTTTCGCCTCAGAGG +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLHFALW*WLSPQR
Trigger: CCTCTGAGGCGAAAGCCATCACCACAGAGCAAAATG...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGTCTGTCCCACAGAAGTaGCAATCTGCAAAGATGCCT +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGSVPQK*QSAKMP
Trigger: AGGCATCTTTGCAGATTGCCACTTCTGTGGGACAGA...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGCACAACCCAGCAGGCTaGTCATGGAGCGCATGTAGT +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGHNPAG*SWSACS
Trigger: ACTACATGCGCTCCATGACCAGCCTGCTGGGTTGTG...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGATCTGCATGGAGGGCTaGTCTTTATTCTGTCCCACA +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKICMEG*SLFCPT
Trigger: TGTGGGACAGAATAAAGATCAGCCCTCCATGCAGAT...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGCAGGTAGCGCATAGCTaGACGGATGCCTTCCATAGT +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGQVAHS*TDAFHS
Trigger: ACTATGGAAGGCATCCGTTCAGCTATGCGCTACCTG...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGTTTGACTGCAGAAGTTaGTGTATCTGTGGAGATGGC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGFDCRS*CICGDG
Trigger: GCCATCTCCACAGATACAGCAACTTCTGCAGTCAAA...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGAACCCTTCAGCTTCCTaGTTGGCCGAGTTGGTGGTA +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGNPSAS*LAELVV
Trigger: TACCACCAACTCGGCCAAGCAGGAAGCTGAAGGGTT...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGCAGCAAAGATGTaGTCTCTTCAGGATTGTCCT +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLGAAKM*SLQDCP
Trigger: AGGACAATCCTGAAGAGACCACATCTTTGCTGCCCC...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGAGGATACCTGGGTCTTaGGGCAGCAAAGATGTGGTC +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGRIPGS*GSKDVV
Trigger: GACCACATCTTTGCTGCCCCAAGACCCAGGTATCCT...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGTCCCACACTGGGTTCTaGAAACCCACAAACACTTGC +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLSHTGF*KPTNTC
Trigger: GCAAGTGTTTGTGGGTTTCCAGAACCCAGTGTGGGA...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGGGCAATCTGCAAAGATaGCTGGTCTTCATCCTGTCC +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGGNLQR*LVFILS
Trigger: GGACAGGATGAAGACCAGGCATCTTTGCAGATTGCC...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGTGGTGGAAATCTGCTTaGAGAGCAGGTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLWWKSA*RAGPHL
Trigger: AAGATGAGGACCTGCTCTCCAAGCAGATTTCCACCA...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGCTGATGTGGAATATCTaGGCTCTCATCTTTGACTGC +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKLMWNI*ALIFDC
Trigger: GCAGTCAAAGATGAGAGCCCAGATATTCCACATCAG...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGTCTGTCCCACAGAAGTaGCAATCTGCAAAAATGCCT +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLSVPQK*QSAKMP
Trigger: AGGCATTTTTGCAGATTGTCACTTCTGTGGGACAGA...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR TCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGGTCTGTATGGAGGCCTaGTCTTTATTCTGTCCCACA +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGVCMEA*SLFCPT
Trigger: TGTGGGACAGAATAAAGATCAGGCCTCCATACAGAC...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp AACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGTCCTGCTCTTCATTTTaGTCTGTGGTGATGGCTTTC +
Preference number: 4 (lower is better)
Translates to: NACGYLLKGRGQLPSAGLSCSSF*SVVMAF
Trigger: GAAAGCCATCACCACAGAGCAAAATGAAGAGCAGGA...CAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGCCTGGTCTTTATCCTaGTCAAAAACTGTGTTAATC +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGAWSLS*SKTVLI
Trigger: GATTAACACAGTTTTTGAGCAGGATAAAGACCAGGC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGGACAATCTGCAAAAATaGCTGGTCTTCATCTTGTCC +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKDNLQK*LVFILS
Trigger: GGACAAGATGAAGACCAGGCATTTTTGCAGATTGTC...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGACAGAAGTGACAATCTaGAAAAATGCCTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGTEVTI*KNAWSS
Trigger: TGAAGACCAGGCATTTTTGCAGATTGTCACTTCTGT...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGAAAACTGTGTTAATCTaGATGTACGCCTGGTCTACA +
Preference number: 4 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKKTVLI*MYAWST
Trigger: TGTAGACCAGGCGTACATGCAGATTAACACAGTTTT...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGACAGAAGTGGCAATCTaGAAAGATGCCTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGTEVAI*KDAWSS
Trigger: TGAAGACCAGGCATCTTTGCAGATTGCCACTTCTGT...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGAGGTGTCCATCTGCATaGAGGGCTGATCTTTATTCT +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGRCPSA*RADLYS
Trigger: AGAATAAAGATCAGCCCTCCATGCAGATGGACACCT...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGAAGTTGCTGTATCTGTaGAGATGGCTGGCTCTACAT +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGKLLYL*RWLALH
Trigger: ATGTAGAGCCAGCCATCTCCACAGATACAGCAACTT...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR GCA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGGCTCTCATCTTTGACTaGAGAAGTTGCTGTATCTGT +
Preference number: 4 (lower is better)
Translates to: INACGYLLKGRGQLPSAGALIFD*RSCCIC
Trigger: ACAGATACAGCAACTTCTGCAGTCAAAGATGAGAGC...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp GGGCTGAGCCAGTTCCAGACATCACCCCAGAGGAGAAAGCTGACCTaGCGCTGCGCAAGAGGCTGGCGACAGTCCGCAGGCGGGGACCCT +
Preference number: 5 (lower is better)
Translates to: GLSQFQTSPQRRKLT*RCARGWRQSAGGDP
Trigger: AGGGTCCCCGCCTGCGGACTGTCGCCAGCCTCTTGCGCAGCGCCAGGTCAGCTTTCTCCTCTGGGGTGATGTCTGGAACTGGCTCAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp TCCTGCCCAGGGCCACCTGGTAGAAATCTGGAGAGTGGGGTGGGCTaGCACCTGGGGAGCCTGGGTCAGGTGGATCCGGTGGGATACCTG +
Preference number: 5 (lower is better)
Translates to: SCPGPPGRNLESGVG*HLGSLGQVDPVGYL
Trigger: CAGGTATCCCACCGGATCCACCTGACCCAGGCTCCCCAGGTGGCAGCCCACCCCACTCTCCAGATTTCTACCAGGTGGCCCTGGGCAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp ACATCACCCCAGAGGAGAAAGCTGACCTGGCGCTGCGCAAGAGGCTaGCGACAGTCCGCAGGCGGGGACCCTCGTCTTGTAGCCGGTCAG +
Preference number: 5 (lower is better)
Translates to: TSPQRRKLTWRCARG*RQSAGGDPRLVAGQ
Trigger: CTGACCGGCTACAAGACGAGGGTCCCCGCCTGCGGACTGTCGCCAGCCTCTTGCGCAGCGCCAGGTCAGCTTTCTCCTCTGGGGTGATGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp AGCCAGTTCCAGACATCACCCCAGAGGAGAAAGCTGACCTGGCGCTaGGCAAGAGGCTGGCGACAGTCCGCAGGCGGGGACCCTCGTCTT +
Preference number: 5 (lower is better)
Translates to: SQFQTSPQRRKLTWR*ARGWRQSAGGDPRL
Trigger: AAGACGAGGGTCCCCGCCTGCGGACTGTCGCCAGCCTCTTGCGCAGCGCCAGGTCAGCTTTCTCCTCTGGGGTGATGTCTGGAACTGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp CGTCTTGTAGCCGGTCAGCTGGAGAGCTGCAGCCCGAGGCCAGAATaGCCACAGCCACACCCATGCGTGTGGCTGTGTCTGACCACACCA +
Preference number: 5 (lower is better)
Translates to: RLVAGQLESCSPRPE*PQPHPCVWLCLTTP
Trigger: TGGTGTGGTCAGACACAGCCACACGCATGGGTGTGGCTGTGGGCATTCTGGCCTCGGGCTGCAGCTCTCCAGCTGACCGGCTACAAGACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 90 bp CGAGGCCAGAATGCCCACAGCCACACCCATGCGTGTGGCTGTGTCTaGCCACACCAGGATGTCTGTGAGGGAGCTGATGGAGCCCTCTCC +
Preference number: 5 (lower is better)
Translates to: RGQNAHSHTHACGCV*PHQDVCEGADGALS
Trigger: GGAGAGGGCTCCATCAGCTCCCTCACAGACATCCTGGTGTGGTCAGACACAGCCACACGCATGGGTGTGGCTGTGGGCATTCTGGCCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp CGTTCTCCACATCAGGTCTATACAGATTGGGGTCCAGAAGGTTCCTaGCCAGGGCCACCTGGTAGAAATCTGGAGAGTGGGGTGGGCTGC +
Preference number: 5 (lower is better)
Translates to: RSPHQVYTDWGPEGS*PGPPGRNLESGVGC
Trigger: GCAGCCCACCCCACTCTCCAGATTTCTACCAGGTGGCCCTGGGCAGGAACCTTCTGGACCCCAATCTGTATAGACCTGATGTGGAGAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp TGCCCTTCTGGAACATTCGGGTTTCCCAGTGTCTTTTCCTGGGTCTaGGAGTCACTCGGGGAAACCGTCCGGCTCCGACTTGTACGGTTG +
Preference number: 5 (lower is better)
Translates to: CPSGTFGFPSVFSWV*ESLGETVRLRLVRL
Trigger: CAACCGTACAAGTCGGAGCCGGACGGTTTCCCCGAGTGACTCCCAGACCCAGGAAAAGACACTGGGAAACCCGAATGTTCCAGAAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp ACTGGCTGCCCTTCTGGAACATTCGGGTTTCCCAGTGTCTTTTCCTaGGTCTGGGAGTCACTCGGGGAAACCGTCCGGCTCCGACTTGTA +
Preference number: 5 (lower is better)
Translates to: TGCPSGTFGFPSVFS*VWESLGETVRLRLV
Trigger: TACAAGTCGGAGCCGGACGGTTTCCCCGAGTGACTCCCAGACCCAGGAAAAGACACTGGGAAACCCGAATGTTCCAGAAGGGCAGCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp CCACTGGTATCGGAAGGGGGTGGGTCAGCAGCTCCCACCGAAGTCTaGACATGTTCAGGCAGGTTAGATAGCACGTCAGCATTTGGAACT +
Preference number: 5 (lower is better)
Translates to: PLVSEGGGSAAPTEV*TCSGRLDSTSAFGT
Trigger: AGTTCCAAATGCTGACGTGCTATCTAACCTGCCTGAACATGTCCAGACTTCGGTGGGAGCTGCTGACCCACCCCCTTCCGATACCAGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp CGACTTGTACGGTTGTTTTCAGCTAGCCTGTCCCACACTGGGTTCTaGAAACCCACAAACACTTGCAGGATACCTGGGTCTTGGGGCAGC +
Preference number: 5 (lower is better)
Translates to: RLVRLFSASLSHTGF*KPTNTCRIPGSWGS
Trigger: GCTGCCCCAAGACCCAGGTATCCTGCAAGTGTTTGTGGGTTTCCAGAACCCAGTGTGGGACAGGCTAGCTGAAAACAACCGTACAAGTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp GTCCCACACTGGGTTCTGGAAACCCACAAACACTTGCAGGATACCTaGGTCTTGGGGCAGCAAAGATGTGGTCTCTTCAGGATTGTCCTG +
Preference number: 5 (lower is better)
Translates to: VPHWVLETHKHLQDT*VLGQQRCGLFRIVL
Trigger: CAGGACAATCCTGAAGAGACCACATCTTTGCTGCCCCAAGACCCAGGTATCCTGCAAGTGTTTGTGGGTTTCCAGAACCCAGTGTGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp TCATGGAGCGCATGTAGTCGTTCTCCACATCAGGTCTATACAGATTaGGGTCCAGAAGGTTCCTGCCCAGGGCCACCTGGTAGAAATCTG +
Preference number: 5 (lower is better)
Translates to: SWSACSRSPHQVYTD*GPEGSCPGPPGRNL
Trigger: CAGATTTCTACCAGGTGGCCCTGGGCAGGAACCTTCTGGACCCCAATCTGTATAGACCTGATGTGGAGAACGACTACATGCGCTCCATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CAA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGCCTGGCGATCTAGCTTaGCTCCCAGGGTTCAAGGCC +
Preference number: 5 (lower is better)
Translates to: INACGYLLKGRGQLPSAGPGDLA*LPGFKA
Trigger: GGCCTTGAACCCTGGGAGCAAAGCTAGATCGCCAGG...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CAA 90 bp TGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGAAGTGCCTGGTCTTCATCTaGTCCCATCAAGGTGGCAGT +
Preference number: 5 (lower is better)
Translates to: CGYLLKGRGQLPSAGLGKCLVFI*SHQGGS
Trigger: ACTGCCACCTTGATGGGACAAGATGAAGACCAGGCA...CTTCCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CAA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGCCAGGGTTCAAGGCCTaGAACCCTTCAGCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: INACGYLLKGRGQLPSAGPGFKA*NPSASC
Trigger: GCAGGAAGCTGAAGGGTTCAAGGCCTTGAACCCTGG...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp GCCCTGATGTGGAATATCTGGGCTCTCATCTTTGACTGCAGAAGTTaGTGTATCTGTGGAGATGGCTGGCTCTACATCTTGCCCTATGGA +
Preference number: 5 (lower is better)
Translates to: ALMWNIWALIFDCRS*CICGDGWLYILPYG
Trigger: TCCATAGGGCAAGATGTAGAGCCAGCCATCTCCACAGATACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp TCAGGCAGGTTAGATAGCACGTCAGCATTTGGAACTAATACTGGCTaGCCTTCTGGAACATTCGGGTTTCCCAGTGTCTTTTCCTGGGTC +
Preference number: 5 (lower is better)
Translates to: SGRLDSTSAFGTNTG*PSGTFGFPSVFSWV
Trigger: GACCCAGGAAAAGACACTGGGAAACCCGAATGTTCCAGAAGGGCAGCCAGTATTAGTTCCAAATGCTGACGTGCTATCTAACCTGCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp TGTCCATCTGCATGGAGGGCTGATCTTTATTCTGTCCCACAGAAGTaGCAATCTGCAAAGATGCCTGGTCTTCATCCTGTCCCATCAAGG +
Preference number: 5 (lower is better)
Translates to: CPSAWRADLYSVPQK*QSAKMPGLHPVPSR
Trigger: CCTTGATGGGACAGGATGAAGACCAGGCATCTTTGCAGATTGCCACTTCTGTGGGACAGAATAAAGATCAGCCCTCCATGCAGATGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp GGGCAGCAAAGATGTGGTCTCTTCAGGATTGTCCTGGCCCTGATGTaGAATATCTGGGCTCTCATCTTTGACTGCAGAAGTTGCTGTATC +
Preference number: 5 (lower is better)
Translates to: GQQRCGLFRIVLALM*NIWALIFDCRSCCI
Trigger: GATACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGCCAGGACAATCCTGAAGAGACCACATCTTTGCTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CAA 90 bp GCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTTGGGGGTCCTGCTCTTCATTTaGCTCTGTGGTGATGGCTTT +
Preference number: 5 (lower is better)
Translates to: ACGYLLKGRGQLPSAGLGVLLFI*LCGDGF
Trigger: AAAGCCATCACCACAGAGCAAAATGAAGAGCAGGAC...CCCCAACCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 90 bp TGGTCTTCATCTTGTCCCATCAAGGTGGCAGTCTGTATGGAGGCCTaGTCTTTATCCTGCTCAAAAACTGTGTTAATCTGCATGTACGCC +
Preference number: 5 (lower is better)
Translates to: WSSSCPIKVAVCMEA*SLSCSKTVLICMYA
Trigger: GGCGTACATGCAGATTAACACAGTTTTTGAGCAGGATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp TGTCCCATCAAGGTGGCAGTCTGTATGGAGGCCTGGTCTTTATCCTaGTCAAAAACTGTGTTAATCTGCATGTACGCCTGGTCTACATTT +
Preference number: 5 (lower is better)
Translates to: CPIKVAVCMEAWSLS*SKTVLICMYAWSTF
Trigger: AAATGTAGACCAGGCGTACATGCAGATTAACACAGTTTTTGAGCAGGATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 90 bp GGCCTGATCTTTATTCTGTCCCACAGAAGTGACAATCTGCAAAAATaGCTGGTCTTCATCTTGTCCCATCAAGGTGGCAGTCTGTATGGA +
Preference number: 5 (lower is better)
Translates to: GLIFILSHRSDNLQK*LVFILSHQGGSLYG
Trigger: TCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACCAGGCATTTTTGCAGATTGTCACTTCTGTGGGACAGAATAAAGATCAGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS-3UTR CAA 90 bp ATAAACGCTTGTGGTTATTTACTGAAAGGCAGGGGACAGTTACCTAGTGCAGGGTCTGGGCTCTCATCTTaGACTGCAGAAGTTGCTGTA +
Preference number: 5 (lower is better)
Translates to: INACGYLLKGRGQLPSAGSGLSS*TAEVAV
Trigger: TACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGA...CCCTGCACTAGGTAACTGTCCCCTGCCTTTCAGTAAATAACCACAAGCGTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp GGGCCACCTGGTAGAAATCTGGAGAGTGGGGTGGGCTaGCACCTGGGGAGCCTGGGTCAGGTGGATCCGGTG +
Preference number: 6 (lower is better)
Translates to: GPPGRNLESGVG*HLGSLGQVDPV
Trigger: CACCGGATCCACCTGACCCAGGCTCCCCAGGTGGCAGCCCACCCCACTCTCCAGATTTCTACCAGGTGGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp CTGGTAGAAATCTGGAGAGTGGGGTGGGCTGCCACCTaGGGAGCCTGGGTCAGGTGGATCCGGTGGGATACC +
Preference number: 6 (lower is better)
Translates to: LVEIWRVGWAAT*GAWVRWIRWDT
Trigger: GGTATCCCACCGGATCCACCTGACCCAGGCTCCCCAGGTGGCAGCCCACCCCACTCTCCAGATTTCTACCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp TGCAGCCCGAGGCCAGAATGCCCACAGCCACACCCATaGGTGTGGCTGTGTCTGACCACACCAGGATGTCTG +
Preference number: 6 (lower is better)
Translates to: CSPRPECPQPHP*VWLCLTTPGCL
Trigger: CAGACATCCTGGTGTGGTCAGACACAGCCACACGCATGGGTGTGGCTGTGGGCATTCTGGCCTCGGGCTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp CTCCCAGGGTTCAAGGCCTTGAACCCTTCAGCTTCCTaGTTGGCCGAGTTGGTGGTAGGCGTGGGTTCTGGG +
Preference number: 6 (lower is better)
Translates to: LPGFKALNPSAS*LAELVVGVGSG
Trigger: CCCAGAACCCACGCCTACCACCAACTCGGCCAAGCAGGAAGCTGAAGGGTTCAAGGCCTTGAACCCTGGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp CGTCTCTCCACAGACTCCAGCAGGTGCGTGACAGAGTaGAGGGCTGAGCCAGTTCCAGACATCACCCCAGAG +
Preference number: 6 (lower is better)
Translates to: RLSTDSSRCVTE*RAEPVPDITPE
Trigger: CTCTGGGGTGATGTCTGGAACTGGCTCAGCCCTGCACTCTGTCACGCACCTGCTGGAGTCTGTGGAGAGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 90 bp CCAGGGTTCAAGGCCTTGAACCCTTCAGCTTCCTGCTTGGCCGAGTaGGTGGTAGGCGTGGGTTCTGGGTCGCGACCACTGGTATCGGAA +
Preference number: 6 (lower is better)
Translates to: PGFKALNPSASCLAE*VVGVGSGSRPLVSE
Trigger: TTCCGATACCAGTGGTCGCGACCCAGAACCCACGCCTACCACCAACTCGGCCAAGCAGGAAGCTGAAGGGTTCAAGGCCTTGAACCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 72 bp CACAGACTCCAGCAGGTGCGTGACAGAGTGCAGGGCTaGGCCAGTTCCAGACATCACCCCAGAGGAGAAAGC +
Preference number: 6 (lower is better)
Translates to: HRLQQVRDRVQG*ASSRHHPRGES
Trigger: GCTTTCTCCTCTGGGGTGATGTCTGGAACTGGCTCAGCCCTGCACTCTGTCACGCACCTGCTGGAGTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 72 bp AATGCCCACAGCCACACCCATGCGTGTGGCTGTGTCTaGCCACACCAGGATGTCTGTGAGGGAGCTGATGGA +
Preference number: 6 (lower is better)
Translates to: NAHSHTHACGCV*PHQDVCEGADG
Trigger: TCCATCAGCTCCCTCACAGACATCCTGGTGTGGTCAGACACAGCCACACGCATGGGTGTGGCTGTGGGCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp GGAACATTCGGGTTTCCCAGTGTCTTTTCCTGGGTCTaGGAGTCACTCGGGGAAACCGTCCGGCTCCGACTT +
Preference number: 6 (lower is better)
Translates to: GTFGFPSVFSWV*ESLGETVRLRL
Trigger: AAGTCGGAGCCGGACGGTTTCCCCGAGTGACTCCCAGACCCAGGAAAAGACACTGGGAAACCCGAATGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp CCTTCTGGAACATTCGGGTTTCCCAGTGTCTTTTCCTaGGTCTGGGAGTCACTCGGGGAAACCGTCCGGCTC +
Preference number: 6 (lower is better)
Translates to: PSGTFGFPSVFS*VWESLGETVRL
Trigger: GAGCCGGACGGTTTCCCCGAGTGACTCCCAGACCCAGGAAAAGACACTGGGAAACCCGAATGTTCCAGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 72 bp CCTGGCGATCTAGCTTTGCTCCCAGGGTTCAAGGCCTaGAACCCTTCAGCTTCCTGCTTGGCCGAGTTGGTG +
Preference number: 6 (lower is better)
Translates to: PGDLALLPGFKA*NPSASCLAELV
Trigger: CACCAACTCGGCCAAGCAGGAAGCTGAAGGGTTCAAGGCCTTGAACCCTGGGAGCAAAGCTAGATCGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 72 bp GCTGAATCCTCACTGGTCAGCCCTGGCGATCTAGCTTaGCTCCCAGGGTTCAAGGCCTTGAACCCTTCAGCT +
Preference number: 6 (lower is better)
Translates to: AESSLVSPGDLA*LPGFKALNPSA
Trigger: AGCTGAAGGGTTCAAGGCCTTGAACCCTGGGAGCAAAGCTAGATCGCCAGGGCTGACCAGTGAGGATTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp CATCAGGTCTATACAGATTGGGGTCCAGAAGGTTCCTaGCCAGGGCCACCTGGTAGAAATCTGGAGAGTGGG +
Preference number: 6 (lower is better)
Translates to: HQVYTDWGPEGS*PGPPGRNLESG
Trigger: CCCACTCTCCAGATTTCTACCAGGTGGCCCTGGGCAGGAACCTTCTGGACCCCAATCTGTATAGACCTGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp GCATGTAGTCGTTCTCCACATCAGGTCTATACAGATTaGGGTCCAGAAGGTTCCTGCCCAGGGCCACCTGGT +
Preference number: 6 (lower is better)
Translates to: ACSRSPHQVYTD*GPEGSCPGPPG
Trigger: ACCAGGTGGCCCTGGGCAGGAACCTTCTGGACCCCAATCTGTATAGACCTGATGTGGAGAACGACTACATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp CTGTCCCACACTGGGTTCTGGAAACCCACAAACACTTaGAGGATACCTGGGTCTTGGGGCAGCAAAGATGTG +
Preference number: 6 (lower is better)
Translates to: LSHTGFWKPTNT*RIPGSWGSKDV
Trigger: CACATCTTTGCTGCCCCAAGACCCAGGTATCCTGCAAGTGTTTGTGGGTTTCCAGAACCCAGTGTGGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp CTTGCAGGATACCTGGGTCTTGGGGCAGCAAAGATGTaGTCTCTTCAGGATTGTCCTGGCCCTGATGTGGAA +
Preference number: 6 (lower is better)
Translates to: LAGYLGLGAAKM*SLQDCPGPDVE
Trigger: TTCCACATCAGGGCCAGGACAATCCTGAAGAGACCACATCTTTGCTGCCCCAAGACCCAGGTATCCTGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 72 bp CCTGTCCCACACTGGGTTCTGGAAACCCACAAACACTaGCAGGATACCTGGGTCTTGGGGCAGCAAAGATGT +
Preference number: 6 (lower is better)
Translates to: PVPHWVLETHKH*QDTWVLGQQRC
Trigger: ACATCTTTGCTGCCCCAAGACCCAGGTATCCTGCAAGTGTTTGTGGGTTTCCAGAACCCAGTGTGGGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 72 bp CCTGGCCCTGATGTGGAATATCTGGGCTCTCATCTTTaGCTGCAGAAGTTGCTGTATCTGTGGAGATGGCTG +
Preference number: 6 (lower is better)
Translates to: PGPDVEYLGSHL*LQKLLYLWRWL
Trigger: CAGCCATCTCCACAGATACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp GCCCTGATGTGGAATATCTGGGCTCTCATCTTTGACTaGAGAAGTTGCTGTATCTGTGGAGATGGCTGGCTC +
Preference number: 6 (lower is better)
Translates to: ALMWNIWALIFD*RSCCICGDGWL
Trigger: GAGCCAGCCATCTCCACAGATACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp TTCTGTCCCACAGAAGTGGCAATCTGCAAAGATGCCTaGTCTTCATCCTGTCCCATCAAGGTGGCAGTCTGT +
Preference number: 6 (lower is better)
Translates to: FCPTEVAICKDA*SSSCPIKVAVC
Trigger: ACAGACTGCCACCTTGATGGGACAGGATGAAGACCAGGCATCTTTGCAGATTGCCACTTCTGTGGGACAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 72 bp CTGGAAACCCACAAACACTTGCAGGATACCTGGGTCTaGGGGCAGCAAAGATGTGGTCTCTTCAGGATTGTC +
Preference number: 6 (lower is better)
Translates to: LETHKHLQDTWV*GQQRCGLFRIV
Trigger: GACAATCCTGAAGAGACCACATCTTTGCTGCCCCAAGACCCAGGTATCCTGCAAGTGTTTGTGGGTTTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 72 bp TCCTGTCCCATCAAGGTGGCAGTCTGTATGGAGGCCTaGTCTTTATTCTGTCCCACAGAAGTGACAATCTGC +
Preference number: 6 (lower is better)
Translates to: SCPIKVAVCMEA*SLFCPTEVTIC
Trigger: GCAGATTGTCACTTCTGTGGGACAGAATAAAGATCAGGCCTCCATACAGACTGCCACCTTGATGGGACAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp GCAAAAATGCCTGGTCTTCATCTTGTCCCATCAAGGTaGCAGTCTGTATGGAGGCCTGGTCTTTATCCTGCT +
Preference number: 6 (lower is better)
Translates to: AKMPGLHLVPSR*QSVWRPGLYPA
Trigger: AGCAGGATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACCAGGCATTTTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp GCATGGAGGGCTGATCTTTATTCTGTCCCACAGAAGTaGCAATCTGCAAAGATGCCTGGTCTTCATCCTGTC +
Preference number: 6 (lower is better)
Translates to: AWRADLYSVPQK*QSAKMPGLHPV
Trigger: GACAGGATGAAGACCAGGCATCTTTGCAGATTGCCACTTCTGTGGGACAGAATAAAGATCAGCCCTCCATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 90 bp CTGTCCCACAGAAGTGACAATCTGCAAAAATGCCTGGTCTTCATCTaGTCCCATCAAGGTGGCAGTCTGTATGGAGGCCTGGTCTTTATC +
Preference number: 6 (lower is better)
Translates to: LSHRSDNLQKCLVFI*SHQGGSLYGGLVFI
Trigger: GATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACCAGGCATTTTTGCAGATTGTCACTTCTGTGGGACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 72 bp AGCAAAGATGTGGTCTCTTCAGGATTGTCCTGGCCCTaGTGTGGAATATCTGGGCTCTCATCTTTGACTGCA +
Preference number: 6 (lower is better)
Translates to: SKDVVSSGLSWP*CGISGLSSLTA
Trigger: TGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGCCAGGACAATCCTGAAGAGACCACATCTTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp GGTCTTCATCTTGTCCCATCAAGGTGGCAGTCTGTATaGAGGCCTGGTCTTTATCCTGCTCAAAAACTGTGT +
Preference number: 6 (lower is better)
Translates to: GLHLVPSRWQSV*RPGLYPAQKLC
Trigger: ACACAGTTTTTGAGCAGGATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp CTCTTCAGGATTGTCCTGGCCCTGATGTGGAATATCTaGGCTCTCATCTTTGACTGCAGAAGTTGCTGTATC +
Preference number: 6 (lower is better)
Translates to: LFRIVLALMWNI*ALIFDCRSCCI
Trigger: GATACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGCCAGGACAATCCTGAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp AGATGTGGTCTCTTCAGGATTGTCCTGGCCCTGATGTaGAATATCTGGGCTCTCATCTTTGACTGCAGAAGT +
Preference number: 6 (lower is better)
Translates to: RCGLFRIVLALM*NIWALIFDCRS
Trigger: ACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCACATCAGGGCCAGGACAATCCTGAAGAGACCACATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 72 bp AGAAGTGACAATCTGCAAAAATGCCTGGTCTTCATCTaGTCCCATCAAGGTGGCAGTCTGTATGGAGGCCTG +
Preference number: 6 (lower is better)
Translates to: RSDNLQKCLVFI*SHQGGSLYGGL
Trigger: CAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACCAGGCATTTTTGCAGATTGTCACTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp TGGAATATCTGGGCTCTCATCTTTGACTGCAGAAGTTaGTGTATCTGTGGAGATGGCTGGCTCTACATCTTG +
Preference number: 6 (lower is better)
Translates to: WNIWALIFDCRS*CICGDGWLYIL
Trigger: CAAGATGTAGAGCCAGCCATCTCCACAGATACAGCAACTTCTGCAGTCAAAGATGAGAGCCCAGATATTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp TCTTGTCCCATCAAGGTGGCAGTCTGTATGGAGGCCTaGTCTTTATCCTGCTCAAAAACTGTGTTAATCTGC +
Preference number: 6 (lower is better)
Translates to: SCPIKVAVCMEA*SLSCSKTVLIC
Trigger: GCAGATTAACACAGTTTTTGAGCAGGATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp TTCTGTCCCACAGAAGTGACAATCTGCAAAAATGCCTaGTCTTCATCTTGTCCCATCAAGGTGGCAGTCTGT +
Preference number: 6 (lower is better)
Translates to: FCPTEVTICKNA*SSSCPIKVAVC
Trigger: ACAGACTGCCACCTTGATGGGACAAGATGAAGACCAGGCATTTTTGCAGATTGTCACTTCTGTGGGACAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CAA 72 bp TGGTCTACATTTTTCTCCGTGATGGTGGAAATCTGCTaGGAGAGCAGGTCCTCATCTTGTCTCATGAAGGTA +
Preference number: 6 (lower is better)
Translates to: WSTFFSVMVEIC*ESRSSSCLMKV
Trigger: TACCTTCATGAGACAAGATGAGGACCTGCTCTCCAAGCAGATTTCCACCATCACGGAGAAAAATGTAGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS TCA 72 bp GTATGGAGGCCTGATCTTTATTCTGTCCCACAGAAGTaGCAATCTGCAAAAATGCCTGGTCTTCATCTTGTC +
Preference number: 6 (lower is better)
Translates to: VWRPDLYSVPQK*QSAKMPGLHLV
Trigger: GACAAGATGAAGACCAGGCATTTTTGCAGATTGTCACTTCTGTGGGACAGAATAAAGATCAGGCCTCCATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp GCCTGGTCTTTATCCTGCTCAAAAACTGTGTTAATCTaGATGTACGCCTGGTCTACATTTTTCTCCGTGATG +
Preference number: 6 (lower is better)
Translates to: AWSLSCSKTVLI*MYAWSTFFSVM
Trigger: CATCACGGAGAAAAATGTAGACCAGGCGTACATGCAGATTAACACAGTTTTTGAGCAGGATAAAGACCAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS GCA 72 bp TTTATTCTGTCCCACAGAAGTGACAATCTGCAAAAATaGCTGGTCTTCATCTTGTCCCATCAAGGTGGCAGT +
Preference number: 6 (lower is better)
Translates to: FILSHRSDNLQK*LVFILSHQGGS
Trigger: ACTGCCACCTTGATGGGACAAGATGAAGACCAGGCATTTTTGCAGATTGTCACTTCTGTGGGACAGAATAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6
CDS CCA 72 bp TCCTGCTCAAAAACTGTGTTAATCTGCATGTACGCCTaGTCTACATTTTTCTCCGTGATGGTGGAAATCTGC +
Preference number: 6 (lower is better)
Translates to: SCSKTVLICMYA*STFFSVMVEIC
Trigger: GCAGATTTCCACCATCACGGAGAAAAATGTAGACCAGGCGTACATGCAGATTAACACAGTTTTTGAGCAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046004.6