Pregenerated sensors for TEX43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032900Ensembl transcript IDs: ENSMUST00000035640.13, ENSMUST00000127591.2, ENSMUST00000147775.2, ENSMUST00000153248.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCAGAGGACAACATGCAGAATTCAGATGTCTCTTTCCATCCTGTaGGTCCCAGGTCAGACTCAAGCTGTCAGGCTTGGTGGAGAACAC | + |
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Preference number: 1 (lower is better) Translates to: GQRTTCRIQMSLSIL*VPGQTQAVRLGGEH Trigger: GTGTTCTCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACCCACAGGATGGAAAGAGACATCTGAATTCTGCATGTTGTCCTCTGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| 3UTR-3UTR CCA 90 bp | AGGACAACATGCAGAATTCAGATGTCTCTTTCCATCCTGTGGGTCCCAGGTCAGTCAAGCTGTCAGGCTTaGTGGAGAACACCTTTATGT | + |
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Preference number: 2 (lower is better) Translates to: RTTCRIQMSLSILWVPGQSSCQA*WRTPLC Trigger: ACATAAAGGTGTTCTCCACCAAGCCTGACAGCTTGA...CTGACCTGGGACCCACAGGATGGAAAGAGACATCTGAATTCTGCATGTTGTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| 3UTR-3UTR TCA 90 bp | AACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGAATTTCTTTCTTTCCAAGGCATaGCGTAACGGGTCGGGATCA | + |
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Preference number: 2 (lower is better) Translates to: NRGKSLCSGICRFTFLNFFLSKA*RNGSGS Trigger: TGATCCCGACCCGTTACGTCATGCCTTGGAAAGAAA...GAAATTCAGGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| 3UTR CCA 72 bp | GTGGGTCCCAGGTCAGACTCAAGCTGTCAGGCTTGGTaGAGAACACCTTTATGTCTATCAGTCATAGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: VGPRSDSSCQAW*RTPLCLSVIGR Trigger: CCTGCCTATGACTGATAGACATAAAGGTGTTCTCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| 3UTR CCA 72 bp | CCTGTGGGTCCCAGGTCAGACTCAAGCTGTCAGGCTTaGTGGAGAACACCTTTATGTCTATCAGTCATAGGC | + |
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Preference number: 3 (lower is better) Translates to: PVGPRSDSSCQA*WRTPLCLSVIG Trigger: GCCTATGACTGATAGACATAAAGGTGTTCTCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACCCACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| CDS-3UTR CCA 90 bp | GGAAACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGAATGAGCGCTCCAGGCTCTaGGCCCTGAGGACCTCACGC | + |
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Preference number: 4 (lower is better) Translates to: GNRGKSLCSGICRFTFLNERSRL*ALRTSR Trigger: GCGTGAGGTCCTCAGGGCCCAGAGCCTGGAGCGCTC...ATTCAGGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR TCA 90 bp | TCTCTTTCCATCCTGTGGGTCCCAGGTCAGACTCAAGCTGTCAGGCTTGGTGGAGAATATCGTCCCACCTaGGCTGTTGAGGCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SLSILWVPGQTQAVRLGGEYRPT*AVEAAL Trigger: AAGAGCAGCCTCAACAGCTCAGGTGGGACGATATTC...TCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACCCACAGGATGGAAAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| CDS-3UTR TCA 90 bp | AACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGAATTTCCCAGGCTCTGGGCCCTaGGGACCTCACGCTGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: NRGKSLCSGICRFTFLNFPGSGP*GPHAGV Trigger: CACACCAGCGTGAGGTCCTCAGGGCCCAGAGCCTGG...GAAATTCAGGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR TCA 90 bp | GCCTCCGGAAACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGTCAGGTCCTTCCTaGGCTGTTGAGGCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: ASGNRGKSLCSGICRFTFLSGPS*AVEAAL Trigger: AAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACAG...GAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTTTCCGGAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR CCA 90 bp | ACTTCCGAGATCCGCCTATCAGATCAGTCGCCTCCGGAAACCGTGGGAAATCACGACCTCACGCTGGTGTaGAGTTTCTCTTCCCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: TSEIRLSDQSPPETVGNHDLTLV*SFSSLV Trigger: AACAAGGGAAGAGAAACTCCACACCAGCGTGAGGTC...GTGATTTCCCACGGTTTCCGGAGGCGACTGATCTGATAGGCGGATCTCGGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR GCA 90 bp | AGGACAACATGCAGAATTCAGATGTCTCTTTCCATCCTGTGGGTCCCAGGTCAGGTCGGGATCATCCCTTaGTTTAGTGAGAACCGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: RTTCRIQMSLSILWVPGQVGIIP*FSENRG Trigger: GCCCCGGTTCTCACTAAAGCAAGGGATGATCCCGAC...CTGACCTGGGACCCACAGGATGGAAAGAGACATCTGAATTCTGCATGTTGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| 3UTR CAA 72 bp | TCCTGTGGGTCCCAGGTCAGACTCAAGCTGTCAGGCTaGGTGGAGAACACCTTTATGTCTATCAGTCATAGG | + |
|
Preference number: 4 (lower is better) Translates to: SCGSQVRLKLSG*VENTFMSISHR Trigger: CCTATGACTGATAGACATAAAGGTGTTCTCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACCCACAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| CDS-3UTR TCA 90 bp | CAACATGCAGAATTCAGATGTCTCTTTCCATCCTGTGGGTCCCAGGTCAGACTCTTTCTTTCCAAGGCATaGCGTAACGGGTCGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: QHAEFRCLFPSCGSQVRLFLSKA*RNGSGS Trigger: TGATCCCGACCCGTTACGTCATGCCTTGGAAAGAAA...GAGTCTGACCTGGGACCCACAGGATGGAAAGAGACATCTGAATTCTGCATGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| CDS-3UTR CCA 90 bp | GGAAACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGAATATGATGGGTGTGTCTTaGAAAGGCAGAGCGCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GNRGKSLCSGICRFTFLNMMGVS*KGRALQ Trigger: CTGGAGCGCTCTGCCTTTCCAAGACACACCCATCAT...ATTCAGGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR GCA 90 bp | GGAAACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGAATTTTCTCTTCCCTTGTTaGCCTCATGGCTGTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GNRGKSLCSGICRFTFLNFLFPC*PHGCQV Trigger: GACCTGACAGCCATGAGGGCAACAAGGGAAGAGAAA...ATTCAGGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCGTCGGGATCATCCCTTaGTTTAGTGAGAACCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFVGIIP*FSENRG Trigger: GCCCCGGTTCTCACTAAAGCAAGGGATGATCCCGAC...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035640.13 ENSMUST00000147775.2 |
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| CDS-3UTR TCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCGAATATCGTCCCACCTaGGCTGTTGAGGCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFEYRPT*AVEAAL Trigger: AAGAGCAGCCTCAACAGCTCAGGTGGGACGATATTC...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035640.13 ENSMUST00000147775.2 |
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| CDS-3UTR TCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCTTTCTTTCCAAGGCATaGCGTAACGGGTCGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFFLSKA*RNGSGS Trigger: TGATCCCGACCCGTTACGTCATGCCTTGGAAAGAAA...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035640.13 ENSMUST00000147775.2 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCCCACAGGCTTCTGCTTaGTGTAGATTCACGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFPQASA*CRFTFL Trigger: CAGGAACGTGAATCTACAGCAAGCAGAAGCCTGTGG...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCCTGGAGAGAGGCGAATaGAAAGGCATGTCGGTAATC | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFLERGE*KGMSVI Trigger: GATTACCGACATGCCTTTGCATTCGCCTCTCTCCAG...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCCGTGGGAAATCACTGTaGTCTGGTATCTGGAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFRGKSL*SGIWRE Trigger: CTCTCTCCAGATACCAGAGCACAGTGATTTCCCACG...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS-3UTR CCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCGAAATCACTGTGCTCTaGTATCTGGAGAGAGGCGAA | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFEITVL*YLERGE Trigger: TTCGCCTCTCTCCAGATACCAGAGCACAGTGATTTC...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS-3UTR GCA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCCGTGGGAAATCACTGTaGTCTGGTATCTGTAGATTC | + |
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Preference number: 4 (lower is better) Translates to: EGKRLNYFILLVLVVVGFRGKSL*SGICRF Trigger: GAATCTACAGATACCAGAGCACAGTGATTTCCCACG...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147775.2 |
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| CDS CCA 90 bp | GGAAAGGCAGAGCGCTCCAGGCTCTGGGCCCTGAGGACCTCACGCTaGTGTGGAGTTTCTCTTCCCTTGTTGCCCTCATGGCTGTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: GKAERSRLWALRTSR*CGVSLPLLPSWLSG Trigger: ACCTGACAGCCATGAGGGCAACAAGGGAAGAGAAACTCCACACCAGCGTGAGGTCCTCAGGGCCCAGAGCCTGGAGCGCTCTGCCTTTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS CCA 90 bp | GTGAATATCGTCCCACCTCTCAGCACCACCATGATGGGTGTGTCTTaGAAAGGCAGAGCGCTCCAGGCTCTGGGCCCTGAGGACCTCACG | + |
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Preference number: 5 (lower is better) Translates to: VNIVPPLSTTMMGVS*KGRALQALGPEDLT Trigger: CGTGAGGTCCTCAGGGCCCAGAGCCTGGAGCGCTCTGCCTTTCCAAGACACACCCATCATGGTGGTGCTGAGAGGTGGGACGATATTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR CAA 90 bp | ACTTCCGAGATCCGCCTATCAGATCAGTCGCCTCCGGAAACCGTGGGAAATCACGTCCTTCCTGAGCTGTaGAGGCTGCTCTTCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: TSEIRLSDQSPPETVGNHVLPEL*RLLFCR Trigger: CCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGAC...GTGATTTCCCACGGTTTCCGGAGGCGACTGATCTGATAGGCGGATCTCGGAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR CAA 90 bp | GGTCCCAGGTCAGACTCAAGCTGTCAGGCTTGGTGGAGAACACCTTTATGTCTAGTCCCACCTGAGCTGTaGAGGCTGCTCTTCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GPRSDSSCQAWWRTPLCLVPPEL*RLLFCR Trigger: CCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGAC...TAGACATAAAGGTGTTCTCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| CDS TCA 90 bp | TCTTCCCTTGTTGCCCTCATGGCTGTCAGGTCCTTCCTGAGCTGTTaGGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTCTGCTGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSLVALMAVRSFLSC*GCSSAGLHVFSAVW Trigger: CCAGACAGCAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACAGCCATGAGGGCAACAAGGGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR CAA 90 bp | ACTTCCGAGATCCGCCTATCAGATCAGTCGCCTCCGGAAACCGTGGGAAATCACGGAGTTTCTCTTCCCTaGTTGCCCTCATGGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: TSEIRLSDQSPPETVGNHGVSLP*LPSWLS Trigger: TGACAGCCATGAGGGCAACAAGGGAAGAGAAACTCC...GTGATTTCCCACGGTTTCCGGAGGCGACTGATCTGATAGGCGGATCTCGGAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS TCA 90 bp | GGAGTTTCTCTTCCCTTGTTGCCCTCATGGCTGTCAGGTCCTTCCTaGGCTGTTGAGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GVSLPLLPSWLSGPS*AVEAALLQVCMCSL Trigger: CAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACAGCCATGAGGGCAACAAGGGAAGAGAAACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR CAA 90 bp | TCTCTTTCCATCCTGTGGGTCCCAGGTCAGACTCAAGCTGTCAGGCTTGGTGGATGCTCTTCTGCAGGTTaGCATGTGTTCTCTGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: SLSILWVPGQTQAVRLGGCSSAG*HVFSAV Trigger: GACAGCAGAGAACACATGCAAACCTGCAGAAGAGCA...TCCACCAAGCCTGACAGCTTGAGTCTGACCTGGGACCCACAGGATGGAAAGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127591.2 |
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| CDS-3UTR CAA 90 bp | CCTCCGGAAACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCCATGATGGGTGTGTCTaGGAAAGGCAGAGCGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PPETVGNHCALVSVDSRSHDGCV*ERQSAP Trigger: TGGAGCGCTCTGCCTTTCCAAGACACACCCATCATG...GGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTTTCCGGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS TCA 90 bp | TCCCTTGCTTTAGTGAGAACCGGGGCAAGTGAATATCGTCCCACCTaGGCTGTTGAGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: SLALVRTGASEYRPT*AVEAALLQVCMCSL Trigger: CAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGACGATATTCACTTGCCCCGGTTCTCACTAAAGCAAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035640.13 ENSMUST00000127591.2 |
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| CDS TCA 90 bp | TCCCTTGCTTTAGTGAGAACCGGGGCAAGTGAATATCGTCCCACCTaGGCTGTTGAGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTCTN | + |
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Preference number: 5 (lower is better) Translates to: SLALVRTGASEYRPT*AVEAALLQVCMCSL Trigger: NAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGACGATATTCACTTGCCCCGGTTCTCACTAAAGCAAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147775.2 |
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| CDS GCA 90 bp | AAACCGTGGGAAATCACTGTGCTCTGGTATCTGGAGAGAGGCGAATaGAAAGGCATGTCGGTAATCTTTATCTCCGGCAGGCCTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KPWEITVLWYLERGE*KGMSVIFISGRPFF Trigger: GAAGAAAGGCCTGCCGGAGATAAAGATTACCGACATGCCTTTGCATTCGCCTCTCTCCAGATACCAGAGCACAGTGATTTCCCACGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS-3UTR CAA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCGTCCCACCTGAGCTGTaGAGGCTGCTCTTCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: EGKRLNYFILLVLVVVGFVPPEL*RLLFCR Trigger: CCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGAC...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035640.13 ENSMUST00000147775.2 |
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| CDS-3UTR CAA 90 bp | AACCGTGGGAAATCACTGTGCTCTGGTATCTGTAGATTCACGTTCCTGAATTTCTGCTCTTCTGCAGGTTaGCATGTGTTCTCTGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: NRGKSLCSGICRFTFLNFCSSAG*HVFSAV Trigger: GACAGCAGAGAACACATGCAAACCTGCAGAAGAGCA...GAAATTCAGGAACGTGAATCTACAGATACCAGAGCACAGTGATTTCCCACGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS-3UTR CAA 90 bp | GAAGGCAAGAGACTGAACTACTTTATCTTACTGGTTTTAGTAGTAGTGGGGTTCTGCTCTTCTGCAGGTTaGCATGTGTTCTCTGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: EGKRLNYFILLVLVVVGFCSSAG*HVFSAV Trigger: GACAGCAGAGAACACATGCAAACCTGCAGAAGAGCA...GAACCCCACTACTACTAAAACCAGTAAGATAAAGTAGTTCAGTCTCTTGCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS CCA 72 bp | GTCCCACCTCTCAGCACCACCATGATGGGTGTGTCTTaGAAAGGCAGAGCGCTCCAGGCTCTGGGCCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: VPPLSTTMMGVS*KGRALQALGPE Trigger: CTCAGGGCCCAGAGCCTGGAGCGCTCTGCCTTTCCAAGACACACCCATCATGGTGGTGCTGAGAGGTGGGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS CCA 72 bp | CTCCAGGCTCTGGGCCCTGAGGACCTCACGCTGGTGTaGAGTTTCTCTTCCCTTGTTGCCCTCATGGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LQALGPEDLTLV*SFSSLVALMAV Trigger: GACAGCCATGAGGGCAACAAGGGAAGAGAAACTCCACACCAGCGTGAGGTCCTCAGGGCCCAGAGCCTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS CCA 72 bp | TGGGTGTGTCTTGGAAAGGCAGAGCGCTCCAGGCTCTaGGCCCTGAGGACCTCACGCTGGTGTGGAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: WVCLGKAERSRL*ALRTSRWCGVS Trigger: AGAAACTCCACACCAGCGTGAGGTCCTCAGGGCCCAGAGCCTGGAGCGCTCTGCCTTTCCAAGACACACCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS CCA 72 bp | AGTCGCCTCCGGAAACCGTGGGAAATCACTGTGCTCTaGTATCTGGAGAGAGGCGAATGCAAAGGCATGTCG | + |
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Preference number: 6 (lower is better) Translates to: SRLRKPWEITVL*YLERGECKGMS Trigger: CGACATGCCTTTGCATTCGCCTCTCTCCAGATACCAGAGCACAGTGATTTCCCACGGTTTCCGGAGGCGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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| CDS CAA 90 bp | CTCTTCCCTTGTTGCCCTCATGGCTGTCAGGTCCTTCCTGAGCTGTaGAGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTCTGCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: LFPCCPHGCQVLPEL*RLLFCRFACVLCCL Trigger: CAGACAGCAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACAGCCATGAGGGCAACAAGGGAAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS TCA 72 bp | GTTGCCCTCATGGCTGTCAGGTCCTTCCTGAGCTGTTaGGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: VALMAVRSFLSC*GCSSAGLHVFS Trigger: AGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACAGCCATGAGGGCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS CAA 72 bp | GAACCGGGGCAAGTGAATATCGTCCCACCTGAGCTGTaGAGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: EPGQVNIVPPEL*RLLFCRFACVL Trigger: GAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGACGATATTCACTTGCCCCGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035640.13 ENSMUST00000127591.2 ENSMUST00000147775.2 |
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| CDS CAA 72 bp | TGTTGCCCTCATGGCTGTCAGGTCCTTCCTGAGCTGTaGAGGCTGCTCTTCTGCAGGTTTGCATGTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: CCPHGCQVLPEL*RLLFCRFACVL Trigger: GAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACAGCCATGAGGGCAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS TCA 72 bp | TTAGTGAGAACCGGGGCAAGTGAATATCGTCCCACCTaGGCTGTTGAGGCTGCTCTTCTGCAGGTTTGCATG | + |
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Preference number: 6 (lower is better) Translates to: LVRTGASEYRPT*AVEAALLQVCM Trigger: CATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGACGATATTCACTTGCCCCGGTTCTCACTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035640.13 ENSMUST00000127591.2 ENSMUST00000147775.2 |
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| CDS GCA 72 bp | TGTCAGGTCCTTCCTGAGCTGTTGAGGCTGCTCTTCTaGAGGTTTGCATGTGTTCTCTGCTGTCTGGTTGTC | + |
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Preference number: 6 (lower is better) Translates to: CQVLPELLRLLF*RFACVLCCLVV Trigger: GACAACCAGACAGCAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGAAGGACCTGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153248.2 |
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| CDS GCA 72 bp | AATATCGTCCCACCTGAGCTGTTGAGGCTGCTCTTCTaGAGGTTTGCATGTGTTCTCTGCTGTCTGGTTGTC | + |
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Preference number: 6 (lower is better) Translates to: NIVPPELLRLLF*RFACVLCCLVV Trigger: GACAACCAGACAGCAGAGAACACATGCAAACCTGCAGAAGAGCAGCCTCAACAGCTCAGGTGGGACGATATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035640.13 ENSMUST00000127591.2 |
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| CDS GCA 72 bp | GAAATCACTGTGCTCTGGTATCTGGAGAGAGGCGAATaGAAAGGCATGTCGGTAATCTTTATCTCCGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: EITVLWYLERGE*KGMSVIFISGR Trigger: CCTGCCGGAGATAAAGATTACCGACATGCCTTTGCATTCGCCTCTCTCCAGATACCAGAGCACAGTGATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035640.13 |
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