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Pregenerated sensors for TEX36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030976

Ensembl transcript IDs: ENSMUST00000033275.4

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTATGGGCAGTGGGTTTCCTTCAGGGAAGTACACGTGATGGATTCTaGTGTCTTCTCCGTCAGACCAGTGTGAGTGAACCATCTTCCGTC +
Preference number: 5 (lower is better)
Translates to: VWAVGFLQGSTRDGF*CLLRQTSVSEPSSV
Trigger: GACGGAAGATGGTTCACTCACACTGGTCTGACGGAGAAGACACCAGAATCCATCACGTGTACTTCCCTGAAGGAAACCCACTGCCCATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CCA 90 bp AGGGAAGTTTTTGTTTGCTGCTTGCTTCTCTCGAATTTTGTAGATTaGTGGCAGCCTCCTCTCCACCTGCTCAGACAAGTATGGGCAGTG +
Preference number: 5 (lower is better)
Translates to: REVFVCCLLLSNFVD*WQPPLHLLRQVWAV
Trigger: CACTGCCCATACTTGTCTGAGCAGGTGGAGAGGAGGCTGCCACCAATCTACAAAATTCGAGAGAAGCAAGCAGCAAACAAAAACTTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS TCA 90 bp GAAGTACACGTGATGGATTCTGGTGTCTTCTCCGTCAGACCAGTGTaGGTGAACCATCTTCCGTCATTATTCAAAGACGGGTTGAAACGC +
Preference number: 5 (lower is better)
Translates to: EVHVMDSGVFSVRPV*VNHLPSLFKDGLKR
Trigger: GCGTTTCAACCCGTCTTTGAATAATGACGGAAGATGGTTCACTCACACTGGTCTGACGGAGAAGACACCAGAATCCATCACGTGTACTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CCA 72 bp AGAGCCTCTGGAAGGTTTAGGGATCCTGCACAAGCCTaGGGAGAGACAACCTTTGGGTCAACAGCAAGCTCT +
Preference number: 6 (lower is better)
Translates to: RASGRFRDPAQA*GETTFGSTASS
Trigger: AGAGCTTGCTGTTGACCCAAAGGTTGTCTCTCCCCAGGCTTGTGCAGGATCCCTAAACCTTCCAGAGGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CCA 72 bp AGCCTCCTCTCCACCTGCTCAGACAAGTATGGGCAGTaGGTTTCCTTCAGGGAAGTACACGTGATGGATTCT +
Preference number: 6 (lower is better)
Translates to: SLLSTCSDKYGQ*VSFREVHVMDS
Trigger: AGAATCCATCACGTGTACTTCCCTGAAGGAAACCCACTGCCCATACTTGTCTGAGCAGGTGGAGAGGAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CCA 72 bp GTGGGTTTCCTTCAGGGAAGTACACGTGATGGATTCTaGTGTCTTCTCCGTCAGACCAGTGTGAGTGAACCA +
Preference number: 6 (lower is better)
Translates to: VGFLQGSTRDGF*CLLRQTSVSEP
Trigger: TGGTTCACTCACACTGGTCTGACGGAGAAGACACCAGAATCCATCACGTGTACTTCCCTGAAGGAAACCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CCA 72 bp GTTTGCTGCTTGCTTCTCTCGAATTTTGTAGATTGGTaGCAGCCTCCTCTCCACCTGCTCAGACAAGTATGG +
Preference number: 6 (lower is better)
Translates to: VCCLLLSNFVDW*QPPLHLLRQVW
Trigger: CCATACTTGTCTGAGCAGGTGGAGAGGAGGCTGCCACCAATCTACAAAATTCGAGAGAAGCAAGCAGCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CAA 72 bp GTCATGCACAGAGAAAGGGAAGTTTTTGTTTGCTGCTaGCTTCTCTCGAATTTTGTAGATTGGTGGCAGCCT +
Preference number: 6 (lower is better)
Translates to: VMHREREVFVCC*LLSNFVDWWQP
Trigger: AGGCTGCCACCAATCTACAAAATTCGAGAGAAGCAAGCAGCAAACAAAAACTTCCCTTTCTCTGTGCATGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CCA 72 bp GAGATTGAAATTTCTAGAAATGTGTTGCTTTTGATCTaGGGTGAACTTCTTGCGCCCCAAGCCAGAGTCAAA +
Preference number: 6 (lower is better)
Translates to: EIEISRNVLLLI*GELLAPQARVK
Trigger: TTTGACTCTGGCTTGGGGCGCAAGAAGTTCACCCCAGATCAAAAGCAACACATTTCTAGAAATTTCAATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CAA 72 bp TCCATTTGGCTGGTATCCCAAAAACTTTGCACAGTTTaGGTTGTAAGCAAACTTGTAGTCACTCCATTTCTC +
Preference number: 6 (lower is better)
Translates to: SIWLVSQKLCTV*VVSKLVVTPFL
Trigger: GAGAAATGGAGTGACTACAAGTTTGCTTACAACCAAAACTGTGCAAAGTTTTTGGGATACCAGCCAAATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CAA 90 bp AGCAAGCTCTCCATTTGGCTGGTATCCCAAAAACTTTGCACAGTTTaGGTTGTAAGCAAACTTGTAGTCACTCCATTTCTCATCATAATA +
Preference number: 6 (lower is better)
Translates to: SKLSIWLVSQKLCTV*VVSKLVVTPFLIII
Trigger: TATTATGATGAGAAATGGAGTGACTACAAGTTTGCTTACAACCAAAACTGTGCAAAGTTTTTGGGATACCAGCCAAATGGAGAGCTTGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS TCA 72 bp CACAGCTTTCTTAGGTACGTAGGATGTTTGGTTATTTaGAAGACCATCAAAATTGGATGGGATGTAGTCACA +
Preference number: 6 (lower is better)
Translates to: HSFLRYVGCLVI*KTIKIGWDVVT
Trigger: TGTGACTACATCCCATCCAATTTTGATGGTCTTTCAAATAACCAAACATCCTACGTACCTAAGAAAGCTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4
CDS CAA 72 bp CAAACTTGTAGTCACTCCATTTCTCATCATAATATCTaGGAAATCGTCGGAAAGTTGAGATCACCACAGCTT +
Preference number: 6 (lower is better)
Translates to: QTCSHSISHHNI*EIVGKLRSPQL
Trigger: AAGCTGTGGTGATCTCAACTTTCCGACGATTTCCAAGATATTATGATGAGAAATGGAGTGACTACAAGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033275.4