Pregenerated sensors for TEX29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031512Ensembl transcript IDs: ENSMUST00000033909.14, ENSMUST00000144007.2, ENSMUST00000166638.2, ENSMUST00000209692.2, ENSMUST00000209704.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACAAGGCGGGCATGGGGGTGGGGTGCACTGGGAGTCTGCCAGATTaGACCGCGGGTCTGTTAATTCCATTATTCATTATGAGAATCCTG | + |
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Preference number: 1 (lower is better) Translates to: NKAGMGVGCTGSLPD*TAGLLIPLFIMRIL Trigger: CAGGATTCTCATAATGAATAATGGAATTAACAGACCCGCGGTTCAATCTGGCAGACTCCCAGTGCACCCCACCCCCATGCCCGCCTTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| 3UTR TCA 90 bp | TCTGGGTTTGAGGGCGGTTCTGGGGCTGCAGTTTCCTTCTGGGGCTaGTCTTTCGCTGGTTTGGATTTCATCCATAAGCAACATCCAGCT | + |
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Preference number: 1 (lower is better) Translates to: SGFEGGSGAAVSFWG*SFAGLDFIHKQHPA Trigger: AGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAGCCCCAGAACCGCCCTCAAACCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 90 bp | GCTCTCAGTCTTCTTGACAGGTGGGGGAGGTTCTCGAATGGGTTCTaGAATGGGTTCTGGAATAGGTTCTGGAATGGGTTCTGGAATGAG | + |
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Preference number: 1 (lower is better) Translates to: ALSLLDRWGRFSNGF*NGFWNRFWNGFWNE Trigger: CTCATTCCAGAACCCATTCCAGAACCTATTCCAGAACCCATTCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR TCA 90 bp | TCATCCATAAGCAACATCCAGCTTCTATTGGGCTCTCAGTCTTCTTaGCAGGTGGGGGAGGTTCTCGAATGGGTTCTGGAATGGGTTCTG | + |
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Preference number: 1 (lower is better) Translates to: SSISNIQLLLGSQSS*QVGEVLEWVLEWVL Trigger: CAGAACCCATTCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCCCAATAGAAGCTGGATGTTGCTTATGGATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 90 bp | GTTCTGGGGCTGCAGTTTCCTTCTGGGGCTGATCTTTCGCTGGTTTaGATTTCATCCATAAGCAACATCCAGCTTCTATTGGGCTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: VLGLQFPSGADLSLV*ISSISNIQLLLGSQ Trigger: CTGAGAGCCCAATAGAAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAGCCCCAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 90 bp | GGGAGGTTCTCGAATGGGTTCTGGAATGGGTTCTGGAATAGGTTCTaGAATGGGTTCTGGAATGAGTTCTGGAGTGGGAGACTTCAGTAT | + |
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Preference number: 1 (lower is better) Translates to: GRFSNGFWNGFWNRF*NGFWNEFWSGRLQY Trigger: ATACTGAAGTCTCCCACTCCAGAACTCATTCCAGAACCCATTCCAGAACCTATTCCAGAACCCATTCCAGAACCCATTCGAGAACCTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR GCA 90 bp | TGCCACGAACCAAATCAGAGTGAAGAACACCTGTACATAAACTTCTaGTTCTTATCCCCAAAGTCTCATGTTCATCTCAGAATGCAAAAT | + |
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Preference number: 1 (lower is better) Translates to: CHEPNQSEEHLYINF*FLSPKSHVHLRMQN Trigger: ATTTTGCATTCTGAGATGAACATGAGACTTTGGGGATAAGAAGCAGAAGTTTATGTACAGGTGTTCTTCACTCTGATTTGGTTCGTGGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR GCA 90 bp | CATGGGGGTGGGGTGCACTGGGAGTCTGCCAGATTGAACCGCGGGTCTGTTAATCTGCCCCCTGAAACCTaGAGTGGGGTGTCCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: HGGGVHWESARLNRGSVNLPPET*SGVSQL Trigger: GAGCTGGGACACCCCACTGCAGGTTTCAGGGGGCAG...ATTAACAGACCCGCGGTTCAATCTGGCAGACTCCCAGTGCACCCCACCCCCATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| 3UTR-3UTR TCA 90 bp | GTTGCACACATTCAAGGTGCTGCCTGGGGCACGGCACTGCCACTGTTGACCTTCGGCTCTCAGTCTTCTTaGCAGGTGGGGGAGGTTCTC | + |
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Preference number: 2 (lower is better) Translates to: VAHIQGAAWGTALPLLTFGSQSS*QVGEVL Trigger: GAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCC...GAAGGTCAACAGTGGCAGTGCCGTGCCCCAGGCAGCACCTTGAATGTGTGCAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR TCA 90 bp | GTTGCACACATTCAAGGTGCTGCCTGGGGCACGGCACTGCCACTGTTGACCTTCGAATGGGTTCTGGAATaGGTTCTGGAGTGGGAGACT | + |
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Preference number: 2 (lower is better) Translates to: VAHIQGAAWGTALPLLTFEWVLE*VLEWET Trigger: AGTCTCCCACTCCAGAACTCATTCCAGAACCCATTC...GAAGGTCAACAGTGGCAGTGCCGTGCCCCAGGCAGCACCTTGAATGTGTGCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCGGTTCTGGGGCTGCAGTTTCCTTCTGGGGCTGATCTTTCGCTGGTTTGGACAGCTGCTTAACGCCTaGATAAAGCCCACATCTCAT | + |
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Preference number: 2 (lower is better) Translates to: GRFWGCSFLLGLIFRWFGQLLNA*IKPTSH Trigger: ATGAGATGTGGGCTTTATTCAGGCGTTAAGCAGCTG...TCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAGCCCCAGAACCGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR CCA 90 bp | CCTTCTTTACCTCTGGGTTTGAGGGCGGTTCTGGGGCTGCAGTTTCCTTCTGGGTTCTCGAATGGGTTCTaGAATGGGTTCTGGAATAGG | + |
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Preference number: 2 (lower is better) Translates to: PSLPLGLRAVLGLQFPSGFSNGF*NGFWNR Trigger: CCTATTCCAGAACCCATTCCAGAACCCATTCGAGAA...CCCAGAAGGAAACTGCAGCCCCAGAACCGCCCTCAAACCCAGAGGTAAAGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CAA 90 bp | AAACAAGGCGGGCATGGGGGTGGGGTGCACTGGGAGTCTGCCAGATaGAACCGCGGGTCTGTTAATTCCATTATTCATTATGAGAATCCT | + |
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Preference number: 2 (lower is better) Translates to: KQGGHGGGVHWESAR*NRGSVNSIIHYENP Trigger: AGGATTCTCATAATGAATAATGGAATTAACAGACCCGCGGTTCAATCTGGCAGACTCCCAGTGCACCCCACCCCCATGCCCGCCTTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| 3UTR CAA 90 bp | TTCATCCATAAGCAACATCCAGCTTCTATTGGGCTCTCAGTCTTCTaGACAGGTGGGGGAGGTTCTCGAATGGGTTCTGGAATGGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: FIHKQHPASIGLSVF*TGGGGSRMGSGMGS Trigger: AGAACCCATTCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCCCAATAGAAGCTGGATGTTGCTTATGGATGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCTCTGTTGCACACATTCAAGGTGCTGCCTGGGGCACGGCACTGCCACTGTTCTGTACATAAACTTCTaGTTCTTATCCCCAAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: SLCCTHSRCCLGHGTATVLYINF*FLSPKS Trigger: AGACTTTGGGGATAAGAAGCAGAAGTTTATGTACAG...AACAGTGGCAGTGCCGTGCCCCAGGCAGCACCTTGAATGTGTGCAACAGAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGGGGCTGATCTTTCGCTGGTTTGGATTTCATCCATAAGCAACATCCAGCTTAGTCTTCTTGACAGGTaGGGGAGGTTCTCGAATGGG | + |
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Preference number: 2 (lower is better) Translates to: SGADLSLVWISSISNIQLSLLDR*GRFSNG Trigger: CCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACT...AAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR-3UTR CCA 90 bp | GATCTTTCGCTGGTTTGGATTTCATCCATAAGCAACATCCAGCTTCTATTGGGCTTCTGGAATGAGTTCTaGAGTGGGAGACTTCAGTAT | + |
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Preference number: 2 (lower is better) Translates to: DLSLVWISSISNIQLLLGFWNEF*SGRLQY Trigger: ATACTGAAGTCTCCCACTCCAGAACTCATTCCAGAA...GCCCAATAGAAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR TCA 72 bp | GGCACTGCCACTGTTGACCTTCTTTACCTCTGGGTTTaGGGGCGGTTCTGGGGCTGCAGTTTCCTTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: GTATVDLLYLWV*GRFWGCSFLLG Trigger: CCCCAGAAGGAAACTGCAGCCCCAGAACCGCCCTCAAACCCAGAGGTAAAGAAGGTCAACAGTGGCAGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR TCA 72 bp | TTCAAGGTGCTGCCTGGGGCACGGCACTGCCACTGTTaGCCTTCTTTACCTCTGGGTTTGAGGGCGGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: FKVLPGARHCHC*PSLPLGLRAVL Trigger: CAGAACCGCCCTCAAACCCAGAGGTAAAGAAGGTCAACAGTGGCAGTGCCGTGCCCCAGGCAGCACCTTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR TCA 72 bp | GGCATGGGGGTGGGGTGCACTGGGAGTCTGCCAGATTaGACCGCGGGTCTGTTAATTCCATTATTCATTATG | + |
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Preference number: 3 (lower is better) Translates to: GMGVGCTGSLPD*TAGLLIPLFIM Trigger: CATAATGAATAATGGAATTAACAGACCCGCGGTTCAATCTGGCAGACTCCCAGTGCACCCCACCCCCATGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| 3UTR TCA 72 bp | GAGGGCGGTTCTGGGGCTGCAGTTTCCTTCTGGGGCTaGTCTTTCGCTGGTTTGGATTTCATCCATAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: EGGSGAAVSFWG*SFAGLDFIHKQ Trigger: TTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAGCCCCAGAACCGCCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 72 bp | TCCAGCTTCTATTGGGCTCTCAGTCTTCTTGACAGGTaGGGGAGGTTCTCGAATGGGTTCTGGAATGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: SSFYWALSLLDR*GRFSNGFWNGF Trigger: GAACCCATTCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCCCAATAGAAGCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 72 bp | CTTCTTGACAGGTGGGGGAGGTTCTCGAATGGGTTCTaGAATGGGTTCTGGAATAGGTTCTGGAATGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: LLDRWGRFSNGF*NGFWNRFWNGF Trigger: GAACCCATTCCAGAACCTATTCCAGAACCCATTCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 72 bp | TCGAATGGGTTCTGGAATGGGTTCTGGAATAGGTTCTaGAATGGGTTCTGGAATGAGTTCTGGAGTGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: SNGFWNGFWNRF*NGFWNEFWSGR Trigger: TCTCCCACTCCAGAACTCATTCCAGAACCCATTCCAGAACCTATTCCAGAACCCATTCCAGAACCCATTCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 72 bp | TGGAATGGGTTCTGGAATAGGTTCTGGAATGGGTTCTaGAATGAGTTCTGGAGTGGGAGACTTCAGTATTTC | + |
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Preference number: 3 (lower is better) Translates to: WNGFWNRFWNGF*NEFWSGRLQYF Trigger: GAAATACTGAAGTCTCCCACTCCAGAACTCATTCCAGAACCCATTCCAGAACCTATTCCAGAACCCATTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CCA 72 bp | CTGCAGTTTCCTTCTGGGGCTGATCTTTCGCTGGTTTaGATTTCATCCATAAGCAACATCCAGCTTCTATTG | + |
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Preference number: 3 (lower is better) Translates to: LQFPSGADLSLV*ISSISNIQLLL Trigger: CAATAGAAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR GCA 72 bp | CCAAATCAGAGTGAAGAACACCTGTACATAAACTTCTaGTTCTTATCCCCAAAGTCTCATGTTCATCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: PNQSEEHLYINF*FLSPKSHVHLR Trigger: TCTGAGATGAACATGAGACTTTGGGGATAAGAAGCAGAAGTTTATGTACAGGTGTTCTTCACTCTGATTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| CDS-3UTR GCA 90 bp | ATCCTGTGGTCTCCTCTCAGCTGCCCCCTGAAACCTGCAGTGGGGTGTCCCAGCCCCAGGGCTCCTAGCTaGAAACTTCTTCAGGAGATG | + |
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Preference number: 4 (lower is better) Translates to: ILWSPLSCPLKPAVGCPSPRAPS*KLLQEM Trigger: CATCTCCTGAAGAAGTTTGCAGCTAGGAGCCCTGGG...GCTGGGACACCCCACTGCAGGTTTCAGGGGGCAGCTGAGAGGAGACCACAGGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| CDS-3UTR TCA 90 bp | TGGTCTCCTCTCAGCTGCCCCCTGAAACCTGCAGTGGGGTGTCCCAGCTCCAAGGTGGTGGGGACCTCTTaGTTTCTTTGGTGTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: WSPLSCPLKPAVGCPSSKVVGTS*FLWCLS Trigger: TGAAAGACACCAAAGAAATCAAGAGGTCCCCACCAC...CTTGGAGCTGGGACACCCCACTGCAGGTTTCAGGGGGCAGCTGAGAGGAGACCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| CDS-3UTR TCA 90 bp | CATCCAGCTTCTATTGGGCTCTCAGTCTTCTTGACAGGTGGGGGAGGTTCTCGATGCAGCGCTCCCTGGTaGCATTGTAGTCACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: HPASIGLSVFLTGGGGSRCSAPW*HCSHRC Trigger: ACATCTGTGACTACAATGTCACCAGGGAGCGCTGCA...TCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCCCAATAGAAGCTGGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| 3UTR CAA 72 bp | GGGCATGGGGGTGGGGTGCACTGGGAGTCTGCCAGATaGAACCGCGGGTCTGTTAATTCCATTATTCATTAT | + |
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Preference number: 4 (lower is better) Translates to: GHGGGVHWESAR*NRGSVNSIIHY Trigger: ATAATGAATAATGGAATTAACAGACCCGCGGTTCAATCTGGCAGACTCCCAGTGCACCCCACCCCCATGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| 3UTR CAA 72 bp | AAGCAACATCCAGCTTCTATTGGGCTCTCAGTCTTCTaGACAGGTGGGGGAGGTTCTCGAATGGGTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KQHPASIGLSVF*TGGGGSRMGSG Trigger: TCCAGAACCCATTCGAGAACCTCCCCCACCTGTCAAGAAGACTGAGAGCCCAATAGAAGCTGGATGTTGCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| CDS-3UTR TCA 90 bp | TCTGGGGCTGATCTTTCGCTGGTTTGGATTTCATCCATAAGCAACATCCAGCTTGTGGTGGGGACCTCTTaGTTTCTTTGGTGTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: SGADLSLVWISSISNIQLVVGTS*FLWCLS Trigger: TGAAAGACACCAAAGAAATCAAGAGGTCCCCACCAC...AAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATCAGCCCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| CDS-3UTR GCA 90 bp | GATCTTTCGCTGGTTTGGATTTCATCCATAAGCAACATCCAGCTTCTATTGGGCAGGGATGTCACACACTaGAAACTTCTTCAGGAGATG | + |
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Preference number: 4 (lower is better) Translates to: DLSLVWISSISNIQLLLGRDVTH*KLLQEM Trigger: CATCTCCTGAAGAAGTTTGCAGTGTGTGACATCCCT...GCCCAATAGAAGCTGGATGTTGCTTATGGATGAAATCCAAACCAGCGAAAGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| CDS TCA 90 bp | CGCCCCTGTAGAAACAGCAGTCGAGACTCCTGCAGCGCTCCCTGGTaGCATTGTAGTCACAGATGTCATACAGAGGGATGTCACACACTG | + |
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Preference number: 5 (lower is better) Translates to: RPCRNSSRDSCSAPW*HCSHRCHTEGCHTL Trigger: CAGTGTGTGACATCCCTCTGTATGACATCTGTGACTACAATGTCACCAGGGAGCGCTGCAGGAGTCTCGACTGCTGTTTCTACAGGGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033909.14 ENSMUST00000166638.2 ENSMUST00000209692.2 ENSMUST00000209704.2 |
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| CDS-3UTR CAA 90 bp | ATCCTGTATCCTGTGGTCTCCTCTCAGCTGCCCCCTGAAACCTGCAGTGGGGTGTGTGGTGGGGACCTCTaGATTTCTTTGGTGTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: ILYPVVSSQLPPETCSGVCGGDL*ISLVSF Trigger: GAAAGACACCAAAGAAATCAAGAGGTCCCCACCACA...CACCCCACTGCAGGTTTCAGGGGGCAGCTGAGAGGAGACCACAGGATACAGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| CDS-3UTR CAA 90 bp | GGGCGGTTCTGGGGCTGCAGTTTCCTTCTGGGGCTGATCTTTCGCTGGTTTGGATGTGGTGGGGACCTCTaGATTTCTTTGGTGTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: GRFWGCSFLLGLIFRWFGCGGDL*ISLVSF Trigger: GAAAGACACCAAAGAAATCAAGAGGTCCCCACCACA...TCCAAACCAGCGAAAGATCAGCCCCAGAAGGAAACTGCAGCCCCAGAACCGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000209704.2 |
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| CDS GCA 90 bp | GGTGACATTGTAGTCACAGATGTCATACAGAGGGATGTCACACACTaGAAACTTCTTCAGGAGATGTGGTGGGGACCTCTTGATTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: GDIVVTDVIQRDVTH*KLLQEMWWGPLDFF Trigger: AAAGAAATCAAGAGGTCCCCACCACATCTCCTGAAGAAGTTTGCAGTGTGTGACATCCCTCTGTATGACATCTGTGACTACAATGTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033909.14 ENSMUST00000166638.2 ENSMUST00000209704.2 |
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| CDS TCA 72 bp | AGCTCCCAGGAACCTCTTGCAGAGGTAGGTAGGTACTaGTCCCACCCCATGAAGACAGTTCCCCAGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SSQEPLAEVGRY*SHPMKTVPQGS Trigger: GGAGCCCTGGGGAACTGTCTTCATGGGGTGGGATCAGTACCTACCTACCTCTGCAAGAGGTTCCTGGGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| CDS CCA 72 bp | CCCAGGGCTCCTAGCTGCAAACTTCTTCAGGAGATGTaGTGGGGACCTCTTGATTTCTTTGGTGTCTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: PRAPSCKLLQEM*WGPLDFFGVFH Trigger: ATGAAAGACACCAAAGAAATCAAGAGGTCCCCACCACATCTCCTGAAGAAGTTTGCAGCTAGGAGCCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144007.2 |
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| CDS CCA 72 bp | AGGGATGTCACACACTGCAAACTTCTTCAGGAGATGTaGTGGGGACCTCTTGATTTCTTTGGTGTCTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: RDVTHCKLLQEM*WGPLDFFGVFH Trigger: ATGAAAGACACCAAAGAAATCAAGAGGTCCCCACCACATCTCCTGAAGAAGTTTGCAGTGTGTGACATCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033909.14 ENSMUST00000166638.2 ENSMUST00000209704.2 |
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