Pregenerated sensors for TEX22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000012211Ensembl transcript IDs: ENSMUST00000012355.14, ENSMUST00000109729.3, ENSMUST00000146107.8
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCAGCGGGTCTCCGGATGGGGCCCTGGCTGTGTCTGTCCTCTCCTaGATACGCTGCAAGGCCAGCCGCCTGCGCTCATCGATGCTGATG | + |
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Preference number: 5 (lower is better) Translates to: PSGSPDGALAVSVLS*IRCKASRLRSSMLM Trigger: CATCAGCATCGATGAGCGCAGGCGGCTGGCCTTGCAGCGTATGCAGGAGAGGACAGACACAGCCAGGGCCCCATCCGGAGACCCGCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 90 bp | CACACACCCAGTCTTGGGTCTGCAAGTCGTCCTGAGGCTTGCTCTTaGTGTCTGGCTGGCTGGAGGCCACGGCAAGCCCCTGTGGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: HTPSLGSASRPEACS*CLAGWRPRQAPVGV Trigger: CACCCCCACAGGGGCTTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACCCAAGACTGGGTGTGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS GCA 90 bp | TCTCCGGATGGGGCCCTGGCTGTGTCTGTCCTCTCCTGCATACGCTaGAAGGCCAGCCGCCTGCGCTCATCGATGCTGATGTTCCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: SPDGALAVSVLSCIR*KASRLRSSMLMFQR Trigger: TCGCTGGAACATCAGCATCGATGAGCGCAGGCGGCTGGCCTTGCAGCGTATGCAGGAGAGGACAGACACAGCCAGGGCCCCATCCGGAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 90 bp | GGCCAGCCGCCTGCGCTCATCGATGCTGATGTTCCAGCGACTTCCTaGGCGCCTGAGTTCCTGAGGCTCACACACCCAGTCTTGGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: GQPPALIDADVPATS*APEFLRLTHPVLGL Trigger: CAGACCCAAGACTGGGTGTGTGAGCCTCAGGAACTCAGGCGCCCAGGAAGTCGCTGGAACATCAGCATCGATGAGCGCAGGCGGCTGGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 90 bp | GGGTCTGCAAGTCGTCCTGAGGCTTGCTCTTGGTGTCTGGCTGGCTaGAGGCCACGGCAAGCCCCTGTGGGGGTGACTGTTGTCTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: GSASRPEACSWCLAG*RPRQAPVGVTVVFA Trigger: AGCAAAGACAACAGTCACCCCCACAGGGGCTTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS GCA 90 bp | AGTACATCTCTCTCTACACCCTCAGACATCAGCTCGGCCAACACATaGGCGATGTCCTGCAGGGGATCAGCCATAGTCTCACAGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: STSLSTPSDISSANT*AMSCRGSAIVSQAW Trigger: CCAGGCCTGTGAGACTATGGCTGATCCCCTGCAGGACATCGCGCATGTGTTGGCCGAGCTGATGTCTGAGGGTGTAGAGAGAGATGTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS TCA 90 bp | AAGAAGTCCTGGAAGGCATTAGAATTCTCGGTAGATCTTAGAGGCTaGGAAATGAGTACATCTCTCTCTACACCCTCAGACATCAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: KKSWKALEFSVDLRG*EMSTSLSTPSDISS Trigger: CGAGCTGATGTCTGAGGGTGTAGAGAGAGATGTACTCATTTCTCAGCCTCTAAGATCTACCGAGAATTCTAATGCCTTCCAGGACTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS GCA 72 bp | GTGGGGACAGACTGGGTCGATGGGGAGGTTTCGGTCTaGTGGCCCTCAGGGTGCAGGCCCAGCGGGTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: VGTDWVDGEVSV*WPSGCRPSGSP Trigger: CGGAGACCCGCTGGGCCTGCACCCTGAGGGCCAGCAGACCGAAACCTCCCCATCGACCCAGTCTGTCCCCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | CAGGGTGCAGGCCCAGCGGGTCTCCGGATGGGGCCCTaGCTGTGTCTGTCCTCTCCTGCATACGCTGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: QGAGPAGLRMGP*LCLSSPAYAAR Trigger: CCTTGCAGCGTATGCAGGAGAGGACAGACACAGCCAGGGCCCCATCCGGAGACCCGCTGGGCCTGCACCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | GGGACAGACTGGGTCGATGGGGAGGTTTCGGTCTGCTaGCCCTCAGGGTGCAGGCCCAGCGGGTCTCCGGAT | + |
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Preference number: 6 (lower is better) Translates to: GTDWVDGEVSVC*PSGCRPSGSPD Trigger: ATCCGGAGACCCGCTGGGCCTGCACCCTGAGGGCCAGCAGACCGAAACCTCCCCATCGACCCAGTCTGTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS GCA 72 bp | TCTCCGGATGGGGCCCTGGCTGTGTCTGTCCTCTCCTaGATACGCTGCAAGGCCAGCCGCCTGCGCTCATCG | + |
|
Preference number: 6 (lower is better) Translates to: SPDGALAVSVLS*IRCKASRLRSS Trigger: CGATGAGCGCAGGCGGCTGGCCTTGCAGCGTATGCAGGAGAGGACAGACACAGCCAGGGCCCCATCCGGAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | GGTCTGCAAGTCGTCCTGAGGCTTGCTCTTGGTGTCTaGCTGGCTGGAGGCCACGGCAAGCCCCTGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: GLQVVLRLALGV*LAGGHGKPLWG Trigger: CCCCCACAGGGGCTTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | AGTCGTCCTGAGGCTTGCTCTTGGTGTCTGGCTGGCTaGAGGCCACGGCAAGCCCCTGTGGGGGTGACTGTT | + |
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Preference number: 6 (lower is better) Translates to: SRPEACSWCLAG*RPRQAPVGVTV Trigger: AACAGTCACCCCCACAGGGGCTTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS TCA 72 bp | TGGCTGGCTGGAGGCCACGGCAAGCCCCTGTGGGGGTaGCTGTTGTCTTTGCTCTTGAGCAAGCTGCCACTG | + |
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Preference number: 6 (lower is better) Translates to: WLAGGHGKPLWG*LLSLLLSKLPL Trigger: CAGTGGCAGCTTGCTCAAGAGCAAAGACAACAGTCACCCCCACAGGGGCTTGCCGTGGCCTCCAGCCAGCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS TCA 72 bp | GGCTCACACACCCAGTCTTGGGTCTGCAAGTCGTCCTaGGGCTTGCTCTTGGTGTCTGGCTGGCTGGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: GSHTQSWVCKSS*GLLLVSGWLEA Trigger: GGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACCCAAGACTGGGTGTGTGAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | AGTCTTGGGTCTGCAAGTCGTCCTGAGGCTTGCTCTTaGTGTCTGGCTGGCTGGAGGCCACGGCAAGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: SLGSASRPEACS*CLAGWRPRQAP Trigger: AGGGGCTTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACCCAAGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CAA 90 bp | GCGACTTCCTGGGCGCCTGAGTTCCTGAGGCTCACACACCCAGTCTaGGGTCTGCAAGTCGTCCTGAGGCTTGCTCTTGGTGTCTGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ATSWAPEFLRLTHPV*GLQVVLRLALGVWL Trigger: CAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACCCAAGACTGGGTGTGTGAGCCTCAGGAACTCAGGCGCCCAGGAAGTCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS GCA 72 bp | ACACCCAGTCTTGGGTCTGCAAGTCGTCCTGAGGCTTaGTCTTGGTGTCTGGCTGGCTGGAGGCCACGGCAA | + |
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Preference number: 6 (lower is better) Translates to: TPSLGSASRPEA*SWCLAGWRPRQ Trigger: TTGCCGTGGCCTCCAGCCAGCCAGACACCAAGAGCAAGCCTCAGGACGACTTGCAGACCCAAGACTGGGTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | CCTGCGCTCATCGATGCTGATGTTCCAGCGACTTCCTaGGCGCCTGAGTTCCTGAGGCTCACACACCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: PALIDADVPATS*APEFLRLTHPV Trigger: GACTGGGTGTGTGAGCCTCAGGAACTCAGGCGCCCAGGAAGTCGCTGGAACATCAGCATCGATGAGCGCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS TCA 72 bp | CTGATGTTCCAGCGACTTCCTGGGCGCCTGAGTTCCTaGGGCTCACACACCCAGTCTTGGGTCTGCAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: LMFQRLPGRLSS*GSHTQSWVCKS Trigger: CGACTTGCAGACCCAAGACTGGGTGTGTGAGCCTCAGGAACTCAGGCGCCCAGGAAGTCGCTGGAACATCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CAA 72 bp | TGGGCGCCTGAGTTCCTGAGGCTCACACACCCAGTCTaGGGTCTGCAAGTCGTCCTGAGGCTTGCTCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: WAPEFLRLTHPV*GLQVVLRLALG Trigger: ACCAAGAGCAAGCCTCAGGACGACTTGCAGACCCAAGACTGGGTGTGTGAGCCTCAGGAACTCAGGCGCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS GCA 72 bp | CTCTCTACACCCTCAGACATCAGCTCGGCCAACACATaGGCGATGTCCTGCAGGGGATCAGCCATAGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LSTPSDISSANT*AMSCRGSAIVS Trigger: TGAGACTATGGCTGATCCCCTGCAGGACATCGCGCATGTGTTGGCCGAGCTGATGTCTGAGGGTGTAGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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| CDS CCA 72 bp | GCCTCAAAATTCTCATCCTTCCAAAGAGGCGCGTCCTaGGCCAAGAAGTCCTGGAAGGCATTAGAATTCTCG | + |
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Preference number: 6 (lower is better) Translates to: ASKFSSFQRGAS*AKKSWKALEFS Trigger: CGAGAATTCTAATGCCTTCCAGGACTTCTTGGCCCAGGACGCGCCTCTTTGGAAGGATGAGAATTTTGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000012355.14 ENSMUST00000109729.3 ENSMUST00000146107.8 |
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