Pregenerated sensors for TEX19.2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039337Ensembl transcript IDs: ENSMUST00000039146.4
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACAGAAGCATGCACAGGGCACGAACTGAGCAAGTAGCACAAAGCAGTCAACTCCTGGGGAAGGACCAGTaGCCCATCCCCCATAAGACT | + |
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Preference number: 2 (lower is better) Translates to: HRSMHRARTEQVAQSSQLLGKDQ*PIPHKT Trigger: AGTCTTATGGGGGATGGGTCACTGGTCCTTCCCCAG...GAGTTGACTGCTTTGTGCTACTTGCTCAGTTCGTGCCCTGTGCATGCTTCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| 3UTR-3UTR CCA 90 bp | CACAGAAGCATGCACAGGGCACGAACTGAGCAAGTAGCACAAAGCAGTCAACTCCAACTAGGGCAGAACTaGGGAAGGACCAGTGACCCA | + |
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Preference number: 2 (lower is better) Translates to: HRSMHRARTEQVAQSSQLQLGQN*GRTSDP Trigger: TGGGTCACTGGTCCTTCCCCAGTTCTGCCCTAGTTG...GAGTTGACTGCTTTGTGCTACTTGCTCAGTTCGTGCCCTGTGCATGCTTCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| 3UTR CCA 72 bp | CCTCCCCTTAATATGATGGACATCCTTCAGGACCTGTaGCTGAGAGGCAACCTCTGGCTCTTCAGTCCCGGG | + |
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Preference number: 3 (lower is better) Translates to: PPLNMMDILQDL*LRGNLWLFSPG Trigger: CCCGGGACTGAAGAGCCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| 3UTR TCA 72 bp | GCACGAACTGAGCAAGTAGCACAAAGCAGTCAACTCTaGATCCAGGACTCACAGCCCCTCAGAAAAAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: ARTEQVAQSSQL*IQDSQPLRKSQ Trigger: TTGGCTTTTTCTGAGGGGCTGTGAGTCCTGGATTCAGAGTTGACTGCTTTGTGCTACTTGCTCAGTTCGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| 3UTR TCA 72 bp | ACTTTATTAACACAGAAGCATGCACAGGGCACGAACTaGGCAAGTAGCACAAAGCAGTCAACTCTGAATCCA | + |
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Preference number: 3 (lower is better) Translates to: TLLTQKHAQGTN*ASSTKQSTLNP Trigger: TGGATTCAGAGTTGACTGCTTTGTGCTACTTGCTCAGTTCGTGCCCTGTGCATGCTTCTGTGTTAATAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | TGTCGCCACCTACAACTAGGGCAGAACTGGGGAAGGACCAGTGACCCATCCCCCTCTCCCCTGGCTCCCTaGTCCAGGACTCTGGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: CRHLQLGQNWGRTSDPSPSPLAP*SRTLGC Trigger: GCACCCCAGAGTCCTGGAGCAGGGAGCCAGGGGAGA...GGGGGATGGGTCACTGGTCCTTCCCCAGTTCTGCCCTAGTTGTAGGTGGCGACA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR TCA 90 bp | GGAAGGACCAGTGACCCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGACAGGCTGGGGTCCCTaGGCCCCAGAGCCTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GRTSDPSPIRLDTQVFALTGWGP*APEPAE Trigger: CTCTGCAGGCTCTGGGGCTCAGGGACCCCAGCCTGT...CAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGGGTCACTGGTCCTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CCA 90 bp | CTGAACTGTCAACTAGGGACGATGAACCCAGCTTCCCTGAGGCCCCAACCCCAGGACAGAGATGCCATGTaGCAGATGACCTTGGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: LNCQLGTMNPASLRPQPQDRDAM*QMTLAL Trigger: GAGGGCCAAGGTCATCTGCCACATGGCATCTCTGTC...CTGGGGTTGGGGCCTCAGGGAAGCTGGGTTCATCGTCCCTAGTTGACAGTTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR TCA 90 bp | CCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGATGCCATGTGGCAGATaGCCTTGGCCCTCTCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: PLNMMDILQDLWLRGNLWMPCGR*PWPSPP Trigger: TGGGGGAGAGGGCCAAGGTCATCTGCCACATGGCAT...CCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CCA 90 bp | CAACCTCCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACAACACCTGCCAGCGCTaGACACGGGTTCTCACGGCC | + |
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Preference number: 4 (lower is better) Translates to: QPPLNMMDILQDLWLRGNNTCQR*TRVLTA Trigger: GGCCGTGAGAACCCGTGTCCAGCGCTGGCAGGTGTT...GTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGGAGGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | CTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGCTCCATAGAGGCAGGACATaGCCTTGGCCCCATGGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: LNMMDILQDLWLRGNLWLHRGRT*PWPHGE Trigger: TTCGCCATGGGGCCAAGGGCATGTCCTGCCTCTATG...GAGCCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CCA 90 bp | CCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGCCTCTGAGAGTTCCATaGGCTCAGCATCCCACACTC | + |
|
Preference number: 4 (lower is better) Translates to: PLNMMDILQDLWLRGNLWPLRVP*AQHPTL Trigger: GAGTGTGGGATGCTGAGCCCATGGAACTCTCAGAGG...CCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | CCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGTCCAGGACTCTGGGGTaGTATTGTGCCAGGGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: PLNMMDILQDLWLRGNLWSRTLG*YCARAN Trigger: ATTTGCCCTGGCACAATAGCACCCCAGAGTCCTGGA...CCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CCA 90 bp | CTGAACTGTCAACTAGGGACGATGAACCCAGCTTCCCTGAGGCCCCAACCCCAGAGGTTGCCCAGGAGATaGGCTTACATTGAAAATCTC | + |
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Preference number: 4 (lower is better) Translates to: LNCQLGTMNPASLRPQPQRLPRR*AYIENL Trigger: GAGATTTTCAATGTAAGCCCATCTCCTGGGCAACCT...CTGGGGTTGGGGCCTCAGGGAAGCTGGGTTCATCGTCCCTAGTTGACAGTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CCA 90 bp | CTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGCTCGGTCCATGGGCCAGGTaGGGCTCAACTCCAACAATA | + |
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Preference number: 4 (lower is better) Translates to: LNMMDILQDLWLRGNLWLGPWAR*GSTPTI Trigger: TATTGTTGGAGTTGAGCCCCACCTGGCCCATGGACC...GAGCCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR TCA 90 bp | CCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTCTCAGACGATGCCTCTaGGAGTTCCATGGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PSPIRLDTQVFALHMKLSLRRCL*EFHGLS Trigger: GCTGAGCCCATGGAACTCTCAGAGGCATCGTCTGAG...ACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | CTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGCTCTACCAACCATGCTTCTaGTTCCAACGGGTCCATGGG | + |
|
Preference number: 4 (lower is better) Translates to: LNMMDILQDLWLRGNLWLYQPCF*FQRVHG Trigger: CCCATGGACCCGTTGGAAGCAGAAGCATGGTTGGTA...GAGCCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | ATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGCTCTTCAGTTCTGGGGTGCTATTGTaGCAGGGCAAATACGAATGC | + |
|
Preference number: 4 (lower is better) Translates to: MMDILQDLWLRGNLWLFSSGVLL*QGKYEC Trigger: GCATTCGTATTTGCCCTGGCACAATAGCACCCCAGA...ACTGAAGAGCCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | CCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTTGTTCAGGTGCATTCTaGAGCTGGGCCACTCTCACG | + |
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Preference number: 4 (lower is better) Translates to: PSPIRLDTQVFALHMKLSCSGAF*SWATLT Trigger: CGTGAGAGTGGCCCAGCTGCAGAATGCACCTGAACA...ACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | CCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTCTCCCTTTTGTAGGCTaGAGTCAGCAGGCACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PSPIRLDTQVFALHMKLSLPFVG*SQQAPA Trigger: AGCTGGTGCCTGCTGACTGCAGCCTACAAAAGGGAG...ACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CCA 90 bp | CCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGTTCATCTGTTCCCCATaGACAAGATGGTACAGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: PLNMMDILQDLWLRGNLWFICSP*TRWYSH Trigger: GTGGCTGTACCATCTTGTCCATGGGGAACAGATGAA...CCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | TCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTCTAGTCTTGCTGTTCAGGTaGATTCTGCAGCTGGGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: SPIRLDTQVFALHMKLSLVLLFR*ILQLGH Trigger: GTGGCCCAGCTGCAGAATGCACCTGAACAGCAAGAC...TAGACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR GCA 90 bp | CACAGAAGCATGCACAGGGCACGAACTGAGCAAGTAGCACAAAGCAGTCAACTCCAGGGCAAATACGAATaGACCTTGAAGCCTCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: HRSMHRARTEQVAQSSQLQGKYE*TLKPPF Trigger: AAAGGGAGGCTTCAAGGTGCATTCGTATTTGCCCTG...GAGTTGACTGCTTTGTGCTACTTGCTCAGTTCGTGCCCTGTGCATGCTTCTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR TCA 90 bp | CCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTAATACGAATGCACCTTaGAGCCTCCCTTTTGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: PSPIRLDTQVFALHMKLSNTNAP*SLPFVG Trigger: GCCTACAAAAGGGAGGCTTCAAGGTGCATTCGTATT...ACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS TCA 90 bp | TCCCCCACTAAGCCCGGGCCATTCCTCGGGCTCAGACGATGCCTCTaGGAGTTCCATGGGCTCAGCATCCCACACTCCTTCTTCCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: SPTKPGPFLGLRRCL*EFHGLSIPHSFFPV Trigger: GACTGGGAAGAAGGAGTGTGGGATGCTGAGCCCATGGAACTCTCAGAGGCATCGTCTGAGCCCGAGGAATGGCCCGGGCTTAGTGGGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 90 bp | ACGCTTAGCTTCCAGCGGTGCAGGTCTTGCTGTTCAGGTGCATTCTaGAGCTGGGCCACTCTCACGTCACCAGGGTCCAGCAACACCTGC | + |
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Preference number: 5 (lower is better) Translates to: TLSFQRCRSCCSGAF*SWATLTSPGSSNTC Trigger: GCAGGTGTTGCTGGACCCTGGTGACGTGAGAGTGGCCCAGCTGCAGAATGCACCTGAACAGCAAGACCTGCACCGCTGGAAGCTAAGCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 90 bp | TCCATCCCCAGCTCTGAGGACTCCAGGACGCTTAGCTTCCAGCGGTaGAGGTCTTGCTGTTCAGGTGCATTCTGCAGCTGGGCCACTCTC | + |
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Preference number: 5 (lower is better) Translates to: SIPSSEDSRTLSFQR*RSCCSGAFCSWATL Trigger: GAGAGTGGCCCAGCTGCAGAATGCACCTGAACAGCAAGACCTGCACCGCTGGAAGCTAAGCGTCCTGGAGTCCTCAGAGCTGGGGATGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CAA 90 bp | CCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACCTCTGGAGGCAGGACATGCCCTaGGCCCCATGGCGAACGCTG | + |
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Preference number: 5 (lower is better) Translates to: PLNMMDILQDLWLRGNLWRQDMP*APWRTL Trigger: CAGCGTTCGCCATGGGGCCAAGGGCATGTCCTGCCT...CCAGAGGTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 90 bp | CAACTCCCTCAGAGATACAACTTCTACCACAAGGAGCCTCTCCCCTaGCTCCCTGCTCCAGGACTCTGGGGTGCTATTGTGCCAGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: QLPQRYNFYHKEPLP*LPAPGLWGAIVPGQ Trigger: TTGCCCTGGCACAATAGCACCCCAGAGTCCTGGAGCAGGGAGCCAGGGGAGAGGCTCCTTGTGGTAGAAGTTGTATCTCTGAGGGAGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS TCA 90 bp | AGGACTCTGGGGTGCTATTGTGCCAGGGCAAATACGAATGCACCTTaGAGCCTCCCTTTTGTAGGCTGCAGTCAGCAGGCACCAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: RTLGCYCARANTNAP*SLPFVGCSQQAPAP Trigger: TGGAGCTGGTGCCTGCTGACTGCAGCCTACAAAAGGGAGGCTTCAAGGTGCATTCGTATTTGCCCTGGCACAATAGCACCCCAGAGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 90 bp | CTTACATTGAAAATCTCCCACCAGGACAAAGGAGGGATGAGCCAGTaGGAGCAGGGTGAAAGCCCATCAAATCTCCAGGGAAGGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LTLKISHQDKGGMSQ*EQGESPSNLQGRAW Trigger: CCAGGCCCTTCCCTGGAGATTTGATGGGCTTTCACCCTGCTCCCACTGGCTCATCCCTCCTTTGTCCTGGTGGGAGATTTTCAATGTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 90 bp | GGGCCAGGTGGGGCTCAACTCCAACAATACAGGTTGCCCAGGAGATaGGCTTACATTGAAAATCTCCCACCAGGACAAAGGAGGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: GPGGAQLQQYRLPRR*AYIENLPPGQRRDE Trigger: CTCATCCCTCCTTTGTCCTGGTGGGAGATTTTCAATGTAAGCCCATCTCCTGGGCAACCTGTATTGTTGGAGTTGAGCCCCACCTGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CAA 90 bp | GGAAGGACCAGTGACCCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGATGTGGCAGATGACCTaGGCCCTCTCCCCCACTAAG | + |
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Preference number: 5 (lower is better) Translates to: GRTSDPSPIRLDTQVFALMWQMT*ALSPTK Trigger: CTTAGTGGGGGAGAGGGCCAAGGTCATCTGCCACAT...CAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGGGTCACTGGTCCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CAA 90 bp | CCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTCCAGCGGTGCAGGTCTaGCTGTTCAGGTGCATTCTG | + |
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Preference number: 5 (lower is better) Translates to: PSPIRLDTQVFALHMKLSPAVQV*LFRCIL Trigger: CAGAATGCACCTGAACAGCAAGACCTGCACCGCTGG...ACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CAA 90 bp | CACAGAAGCATGCACAGGGCACGAACTGAGCAAGTAGCACAAAGCAGTCAACTCACGAGGAAAGCTGCCTaGAAGCAAGCAAAGCAGATC | + |
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Preference number: 5 (lower is better) Translates to: HRSMHRARTEQVAQSSQLTRKAA*KQAKQI Trigger: GATCTGCTTTGCTTGCTTCAAGGCAGCTTTCCTCGT...GAGTTGACTGCTTTGTGCTACTTGCTCAGTTCGTGCCCTGTGCATGCTTCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CAA 90 bp | CCATCCCCCATAAGACTTGATACACAAGTCTTTGCCCTGCACATGAAGCTGAGTGGAGATGGGCTTACATaGAAAATCTCCCACCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: PSPIRLDTQVFALHMKLSGDGLT*KISHQD Trigger: GTCCTGGTGGGAGATTTTCAATGTAAGCCCATCTCC...ACTCAGCTTCATGTGCAGGGCAAAGACTTGTGTATCAAGTCTTATGGGGGATGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS-3UTR CAA 90 bp | CAACCTCCCCTTAATATGATGGACATCCTTCAGGACCTGTGGCTGAGAGGCAACAAATACGAATGCACCTaGAAGCCTCCCTTTTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: QPPLNMMDILQDLWLRGNKYECT*KPPFCR Trigger: CCTACAAAAGGGAGGCTTCAAGGTGCATTCGTATTT...GTTGCCTCTCAGCCACAGGTCCTGAAGGATGTCCATCATATTAAGGGGAGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 72 bp | CTGAGCCCCAGAGCCTGCAGAGACAGAGATGCCATGTaGCAGATGACCTTGGCCCTCTCCCCCACTAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LSPRACRDRDAM*QMTLALSPTKP Trigger: GGGCTTAGTGGGGGAGAGGGCCAAGGTCATCTGCCACATGGCATCTCTGTCTCTGCAGGCTCTGGGGCTCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 72 bp | CTCACGTCACCAGGGTCCAGCAACACCTGCCAGCGCTaGACACGGGTTCTCACGGCCCAACAGGGAGTCATT | + |
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Preference number: 6 (lower is better) Translates to: LTSPGSSNTCQR*TRVLTAQQGVI Trigger: AATGACTCCCTGTTGGGCCGTGAGAACCCGTGTCCAGCGCTGGCAGGTGTTGCTGGACCCTGGTGACGTGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS TCA 72 bp | AAGCCCGGGCCATTCCTCGGGCTCAGACGATGCCTCTaGGAGTTCCATGGGCTCAGCATCCCACACTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: KPGPFLGLRRCL*EFHGLSIPHSF Trigger: GAAGGAGTGTGGGATGCTGAGCCCATGGAACTCTCAGAGGCATCGTCTGAGCCCGAGGAATGGCCCGGGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 72 bp | TTCCAGCGGTGCAGGTCTTGCTGTTCAGGTGCATTCTaGAGCTGGGCCACTCTCACGTCACCAGGGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: FQRCRSCCSGAF*SWATLTSPGSS Trigger: GCTGGACCCTGGTGACGTGAGAGTGGCCCAGCTGCAGAATGCACCTGAACAGCAAGACCTGCACCGCTGGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 72 bp | CGGTGCAGGTCTTGCTGTTCAGGTGCATTCTGCAGCTaGGCCACTCTCACGTCACCAGGGTCCAGCAACACC | + |
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Preference number: 6 (lower is better) Translates to: RCRSCCSGAFCS*ATLTSPGSSNT Trigger: GGTGTTGCTGGACCCTGGTGACGTGAGAGTGGCCCAGCTGCAGAATGCACCTGAACAGCAAGACCTGCACCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 72 bp | CCTGGCTCCCTGCTCCAGGACTCTGGGGTGCTATTGTaGCAGGGCAAATACGAATGCACCTTGAAGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: PGSLLQDSGVLL*QGKYECTLKPP Trigger: GGGAGGCTTCAAGGTGCATTCGTATTTGCCCTGGCACAATAGCACCCCAGAGTCCTGGAGCAGGGAGCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 72 bp | AGCTCTGAGGACTCCAGGACGCTTAGCTTCCAGCGGTaGAGGTCTTGCTGTTCAGGTGCATTCTGCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SSEDSRTLSFQR*RSCCSGAFCSW Trigger: CCAGCTGCAGAATGCACCTGAACAGCAAGACCTGCACCGCTGGAAGCTAAGCGTCCTGGAGTCCTCAGAGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CAA 90 bp | CAGGACTCTGGGGTGCTATTGTGCCAGGGCAAATACGAATGCACCTaGAAGCCTCCCTTTTGTAGGCTGCAGTCAGCAGGCACCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: QDSGVLLCQGKYECT*KPPFCRLQSAGTSS Trigger: GGAGCTGGTGCCTGCTGACTGCAGCCTACAAAAGGGAGGCTTCAAGGTGCATTCGTATTTGCCCTGGCACAATAGCACCCCAGAGTCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 72 bp | AAGGAAAACGAACTTCAGGCCTACCAACCATGCTTCTaGTTCCAACGGGTCCATGGGCCAGGTGGGGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: KENELQAYQPCF*FQRVHGPGGAQ Trigger: TTGAGCCCCACCTGGCCCATGGACCCGTTGGAAGCAGAAGCATGGTTGGTAGGCCTGAAGTTCGTTTTCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CAA 72 bp | GGGGTGCTATTGTGCCAGGGCAAATACGAATGCACCTaGAAGCCTCCCTTTTGTAGGCTGCAGTCAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: GVLLCQGKYECT*KPPFCRLQSAG Trigger: GCCTGCTGACTGCAGCCTACAAAAGGGAGGCTTCAAGGTGCATTCGTATTTGCCCTGGCACAATAGCACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 72 bp | AAAATCTCCCACCAGGACAAAGGAGGGATGAGCCAGTaGGAGCAGGGTGAAAGCCCATCAAATCTCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: KISHQDKGGMSQ*EQGESPSNLQG Trigger: TCCCTGGAGATTTGATGGGCTTTCACCCTGCTCCCACTGGCTCATCCCTCCTTTGTCCTGGTGGGAGATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 72 bp | GACTCTGGGGTGCTATTGTGCCAGGGCAAATACGAATaGACCTTGAAGCCTCCCTTTTGTAGGCTGCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: DSGVLLCQGKYE*TLKPPFCRLQS Trigger: TGACTGCAGCCTACAAAAGGGAGGCTTCAAGGTGCATTCGTATTTGCCCTGGCACAATAGCACCCCAGAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CCA 72 bp | GGGGCTCAACTCCAACAATACAGGTTGCCCAGGAGATaGGCTTACATTGAAAATCTCCCACCAGGACAAAGG | + |
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Preference number: 6 (lower is better) Translates to: GAQLQQYRLPRR*AYIENLPPGQR Trigger: CCTTTGTCCTGGTGGGAGATTTTCAATGTAAGCCCATCTCCTGGGCAACCTGTATTGTTGGAGTTGAGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CAA 72 bp | TCCAACAATACAGGTTGCCCAGGAGATGGGCTTACATaGAAAATCTCCCACCAGGACAAAGGAGGGATGAGC | + |
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Preference number: 6 (lower is better) Translates to: SNNTGCPGDGLT*KISHQDKGGMS Trigger: GCTCATCCCTCCTTTGTCCTGGTGGGAGATTTTCAATGTAAGCCCATCTCCTGGGCAACCTGTATTGTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS GCA 72 bp | TCCCATCTCCAGCATGTTCTTAACGACGAGGAAAGCTaGCTTGAAGCAAGCAAAGCAGATCTTCATCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: SHLQHVLNDEES*LEASKADLHLF Trigger: GAACAGATGAAGATCTGCTTTGCTTGCTTCAAGGCAGCTTTCCTCGTCGTTAAGAACATGCTGGAGATGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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| CDS CAA 72 bp | ATCTCCAGCATGTTCTTAACGACGAGGAAAGCTGCCTaGAAGCAAGCAAAGCAGATCTTCATCTGTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: ISSMFLTTRKAA*KQAKQIFICSP Trigger: TGGGGAACAGATGAAGATCTGCTTTGCTTGCTTCAAGGCAGCTTTCCTCGTCGTTAAGAACATGCTGGAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039146.4 |
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