RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TEX13B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042386

Ensembl transcript IDs: ENSMUST00000044179.8

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTGTCTCAGTCCGGATCAGATACAGTCCTTCGCCTTCCTTCTACCTaGGGACTTGGAGCAGTTGGCAGAAGTTTCCTGTTCAGATCTGTC +
Preference number: 1 (lower is better)
Translates to: VSQSGSDTVLRLPST*GLGAVGRSFLFRSV
Trigger: GACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCTGATCCGGACTGAGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CCA 90 bp AGATACAGTCCTTCGCCTTCCTTCTACCTGAGGACTTGGAGCAGTTaGCAGAAGTTTCCTGTTCAGATCTGTCTCTGGTTCTGCCCTCTG +
Preference number: 1 (lower is better)
Translates to: RYSPSPSFYLRTWSS*QKFPVQICLWFCPL
Trigger: CAGAGGGCAGAACCAGAGACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CCA 90 bp GTCCGGATCAGATACAGTCCTTCGCCTTCCTTCTACCTGAGGACTTaGAGCAGTTGGCAGAAGTTTCCTGTTCAGATCTGTCTCTGGTTC +
Preference number: 1 (lower is better)
Translates to: VRIRYSPSPSFYLRT*SSWQKFPVQICLWF
Trigger: GAACCAGAGACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCTGATCCGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CCA 90 bp TCCCATGGGCCACAACAGCTTCGTATTCTCCAGGTTCACAGTCTCTaGGAGATAGGACTCTTCCAGTTGTGTCTCAGTCCGGATCAGATA +
Preference number: 1 (lower is better)
Translates to: SHGPQQLRILQVHSL*EIGLFQLCLSPDQI
Trigger: TATCTGATCCGGACTGAGACACAACTGGAAGAGTCCTATCTCCCAGAGACTGTGAACCTGGAGAATACGAAGCTGTTGTGGCCCATGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 90 bp GTTCGAGATTTTATCCAATCTAGTTTGCCAAGCATGTTGGCTAGCTaGCAAACTAACACTGTAGGATCCATGGCGCTTCCTGTACTCCTT +
Preference number: 1 (lower is better)
Translates to: VRDFIQSSLPSMLAS*QTNTVGSMALPVLL
Trigger: AAGGAGTACAGGAAGCGCCATGGATCCTACAGTGTTAGTTTGTCAGCTAGCCAACATGCTTGGCAAACTAGATTGGATAAAATCTCGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 90 bp TACCAGTCAGTGAAGGTAATTTTATGGTTGGGGGTCACCACCACATaGGATGAAACATTAAAGGTTGAAACTACTGTTGTAGAGGGTAGA +
Preference number: 1 (lower is better)
Translates to: YQSVKVILWLGVTTT*DETLKVETTVVEGR
Trigger: TCTACCCTCTACAACAGTAGTTTCAACCTTTAATGTTTCATCTCATGTGGTGGTGACCCCCAACCATAAAATTACCTTCACTGACTGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR GCA 90 bp TCCTTTAATGGCTCGTTTCTACTACTGAGTCTTCATGAGCTTTCCTaGAGGTTGCAATGTTTTATCTTTGAGGAAATTGCTCAAAAAGTA +
Preference number: 1 (lower is better)
Translates to: SFNGSFLLLSLHELS*RLQCFIFEEIAQKV
Trigger: TACTTTTTGAGCAATTTCCTCAAAGATAAAACATTGCAACCTGCAGGAAAGCTCATGAAGACTCAGTAGTAGAAACGAGCCATTAAAGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 90 bp TTCTTTCATTTAAAGCATTCTCCTTTAATGGCTCGTTTCTACTACTaGGTCTTCATGAGCTTTCCTGCAGGTTGCAATGTTTTATCTTTG +
Preference number: 1 (lower is better)
Translates to: FFHLKHSPLMARFYY*VFMSFPAGCNVLSL
Trigger: CAAAGATAAAACATTGCAACCTGCAGGAAAGCTCATGAAGACTCAGTAGTAGAAACGAGCCATTAAAGGAGAATGCTTTAAATGAAAGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR GCA 90 bp GCCTACAGTACACAGGACTTCCTACCCCACAGCAAAGAACTATCCGAATCCAGAGACAGGGATCTGGCCTaGAATCCTGGAGGCAGCTGT +
Preference number: 2 (lower is better)
Translates to: AYSTQDFLPHSKELSESRDRDLA*NPGGSC
Trigger: ACAGCTGCCTCCAGGATTGCAGGCCAGATCCCTGTC...TCTGGATTCGGATAGTTCTTTGCTGTGGGGTAGGAAGTCCTGTGTACTGTAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CAA 90 bp CAGATACAGTCCTTCGCCTTCCTTCTACCTGAGGACTTGGAGCAGTaGGCAGAAGTTTCCTGTTCAGATCTGTCTCTGGTTCTGCCCTCT +
Preference number: 2 (lower is better)
Translates to: QIQSFAFLLPEDLEQ*AEVSCSDLSLVLPS
Trigger: AGAGGGCAGAACCAGAGACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR TCA 90 bp AGGACTTCCTACCCCACAGCAAAGAACTATCCGAATCCAGATGTCAAGTGCAATCGCCTTCCTTCTACCTaGGGACTTGGAGCAGTTGGC +
Preference number: 2 (lower is better)
Translates to: RTSYPTAKNYPNPDVKCNRLPST*GLGAVG
Trigger: GCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCG...ATTGCACTTGACATCTGGATTCGGATAGTTCTTTGCTGTGGGGTAGGAAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR GCA 90 bp AAAGCTGCAGTTCTCAGCCTGTGGGCTGTGACCCCTATGGAGGTCAAACAAGCCGTTTGGTTTCTACTCTaGCACCACCCTAACTTCTTG +
Preference number: 2 (lower is better)
Translates to: KAAVLSLWAVTPMEVKQAVWFLL*HHPNFL
Trigger: CAAGAAGTTAGGGTGGTGGCAGAGTAGAAACCAAAC...GGCTTGTTTGACCTCCATAGGGGTCACAGCCCACAGGCTGAGAACTGCAGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR CCA 90 bp AGGACTTCCTACCCCACAGCAAAGAACTATCCGAATCCAGATGTCAAGTGCAATTCTGGCCTGCAATCCTaGAGGCAGCTGTATCCTCAC +
Preference number: 2 (lower is better)
Translates to: RTSYPTAKNYPNPDVKCNSGLQS*RQLYPH
Trigger: GTGAGGATACAGCTGCCTCCAGGATTGCAGGCCAGA...ATTGCACTTGACATCTGGATTCGGATAGTTCTTTGCTGTGGGGTAGGAAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR CCA 90 bp AGTACACAGGACTTCCTACCCCACAGCAAAGAACTATCCGAATCCAGATGTCAACAGGTTCACAGTCTCTaGGAGATAGGACTCTTCCAG +
Preference number: 2 (lower is better)
Translates to: STQDFLPHSKELSESRCQQVHSL*EIGLFQ
Trigger: CTGGAAGAGTCCTATCTCCCAGAGACTGTGAACCTG...TTGACATCTGGATTCGGATAGTTCTTTGCTGTGGGGTAGGAAGTCCTGTGTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR TCA 90 bp CATACCACACTGCCTTCTGTTCCCTGCCTGTTCACTAAATATCTTTTCCATATCCAGCTTCAGCCTCTGTaGCCTTGGCTATTTGAGTTT +
Preference number: 2 (lower is better)
Translates to: HTTLPSVPCLFTKYLFHIQLQPL*PWLFEF
Trigger: AAACTCAAATAGCCAAGGTCACAGAGGCTGAAGCTG...GATATGGAAAAGATATTTAGTGAACAGGCAGGGAACAGAAGGCAGTGTGGTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR CCA 90 bp TCACAGGGGTCACCTAAGACCTTTGGGAGACACAGGTATTTACATTATAATTCAAGGACTTGGAGCAGTTaGCAGAAGTTTCCTGTTCAG +
Preference number: 2 (lower is better)
Translates to: SQGSPKTFGRHRYLHYNSRTWSS*QKFPVQ
Trigger: CTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCT...TGAATTATAATGTAAATACCTGTGTCTCCCAAAGGTCTTAGGTGACCCCTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR GCA 90 bp GTCTTCATGAGCTTTCCTGCAGGTTGCAATGTTTTATCTTTGAGGAAATTGCTCTTATCCAATCTAGTTTaGCAAGCATGTTGGCTAGCT +
Preference number: 2 (lower is better)
Translates to: VFMSFPAGCNVLSLRKLLLSNLV*QACWLA
Trigger: AGCTAGCCAACATGCTTGGCAAACTAGATTGGATAA...GAGCAATTTCCTCAAAGATAAAACATTGCAACCTGCAGGAAAGCTCATGAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CAA 90 bp AATGGCTCGTTTCTACTACTGAGTCTTCATGAGCTTTCCTGCAGGTaGCAATGTTTTATCTTTGAGGAAATTGCTCAAAAAGTACCTAAC +
Preference number: 2 (lower is better)
Translates to: NGSFLLLSLHELSCR*QCFIFEEIAQKVPN
Trigger: GTTAGGTACTTTTTGAGCAATTTCCTCAAAGATAAAACATTGCAACCTGCAGGAAAGCTCATGAAGACTCAGTAGTAGAAACGAGCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 72 bp TCCGGATCAGATACAGTCCTTCGCCTTCCTTCTACCTaGGGACTTGGAGCAGTTGGCAGAAGTTTCCTGTTC +
Preference number: 3 (lower is better)
Translates to: SGSDTVLRLPST*GLGAVGRSFLF
Trigger: GAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCTGATCCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CCA 72 bp CCTTCGCCTTCCTTCTACCTGAGGACTTGGAGCAGTTaGCAGAAGTTTCCTGTTCAGATCTGTCTCTGGTTC +
Preference number: 3 (lower is better)
Translates to: PSPSFYLRTWSS*QKFPVQICLWF
Trigger: GAACCAGAGACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR GCA 72 bp CCCACAGCAAAGAACTATCCGAATCCAGATGTCAAGTaGAATGAGGTTAGGAAACCCTGCAGTAGAGGGAGA +
Preference number: 3 (lower is better)
Translates to: PTAKNYPNPDVK*NEVRKPCSRGR
Trigger: TCTCCCTCTACTGCAGGGTTTCCTAACCTCATTGCACTTGACATCTGGATTCGGATAGTTCTTTGCTGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CCA 72 bp AGATACAGTCCTTCGCCTTCCTTCTACCTGAGGACTTaGAGCAGTTGGCAGAAGTTTCCTGTTCAGATCTGT +
Preference number: 3 (lower is better)
Translates to: RYSPSPSFYLRT*SSWQKFPVQIC
Trigger: ACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR CAA 90 bp CCCCATACCACACTGCCTTCTGTTCCCTGCCTGTTCACTAAATATCTTTTCCATGGTCACCTAAGACCTTaGGGAGACACAGGTATTTAC +
Preference number: 3 (lower is better)
Translates to: PHTTLPSVPCLFTKYLFHGHLRP*GDTGIY
Trigger: GTAAATACCTGTGTCTCCCAAAGGTCTTAGGTGACC...ATGGAAAAGATATTTAGTGAACAGGCAGGGAACAGAAGGCAGTGTGGTATGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR GCA 72 bp TTCAATTTCCAACTTAGTTGTTCCCAACTCTGGTTTTaGCGCACTGCCTACAGTACACAGGACTTCCTACCC +
Preference number: 3 (lower is better)
Translates to: FNFQLSCSQLWF*RTAYSTQDFLP
Trigger: GGGTAGGAAGTCCTGTGTACTGTAGGCAGTGCGGCAAAACCAGAGTTGGGAACAACTAAGTTGGAAATTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR GCA 72 bp AGGTTCCCCTCAGTCCTGACCGTTTGGTTTCTACTCTaGCACCACCCTAACTTCTTGAAGATCCAAAGTAAA +
Preference number: 3 (lower is better)
Translates to: RFPSVLTVWFLL*HHPNFLKIQSK
Trigger: TTTACTTTGGATCTTCAAGAAGTTAGGGTGGTGGCAGAGTAGAAACCAAACGGTCAGGACTGAGGGGAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 72 bp CTTTTGCCAGCTTCAGCCTCTGTGACCTTGGCTATTTaGGTTTTTGTCCACACTGCTAAGGCCTTCAATTTC +
Preference number: 3 (lower is better)
Translates to: LLPASASVTLAI*VFVHTAKAFNF
Trigger: GAAATTGAAGGCCTTAGCAGTGTGGACAAAAACTCAAATAGCCAAGGTCACAGAGGCTGAAGCTGGCAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR-3UTR CAA 90 bp GTCTTCATGAGCTTTCCTGCAGGTTGCAATGTTTTATCTTTGAGGAAATTGCTCGAGGACTTGGAGCAGTaGGCAGAAGTTTCCTGTTCA +
Preference number: 3 (lower is better)
Translates to: VFMSFPAGCNVLSLRKLLEDLEQ*AEVSCS
Trigger: TGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTC...GAGCAATTTCCTCAAAGATAAAACATTGCAACCTGCAGGAAAGCTCATGAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 72 bp TTTATCCAATCTAGTTTGCCAAGCATGTTGGCTAGCTaGCAAACTAACACTGTAGGATCCATGGCGCTTCCT +
Preference number: 3 (lower is better)
Translates to: FIQSSLPSMLAS*QTNTVGSMALP
Trigger: AGGAAGCGCCATGGATCCTACAGTGTTAGTTTGTCAGCTAGCCAACATGCTTGGCAAACTAGATTGGATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 72 bp CCGTTTGGTTTCTACTCTGCCACCACCCTAACTTCTTaGAGATCCAAAGTAAACACCAGTCTTAAAGAACTG +
Preference number: 3 (lower is better)
Translates to: PFGFYSATTLTS*RSKVNTSLKEL
Trigger: CAGTTCTTTAAGACTGGTGTTTACTTTGGATCTTCAAGAAGTTAGGGTGGTGGCAGAGTAGAAACCAAACGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 72 bp TTAAAGCATTCTCCTTTAATGGCTCGTTTCTACTACTaGGTCTTCATGAGCTTTCCTGCAGGTTGCAATGTT +
Preference number: 3 (lower is better)
Translates to: LKHSPLMARFYY*VFMSFPAGCNV
Trigger: AACATTGCAACCTGCAGGAAAGCTCATGAAGACTCAGTAGTAGAAACGAGCCATTAAAGGAGAATGCTTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR GCA 72 bp TTAAACGCCATGTTCGAGATTTTATCCAATCTAGTTTaGCAAGCATGTTGGCTAGCTGACAAACTAACACTG +
Preference number: 3 (lower is better)
Translates to: LNAMFEILSNLV*QACWLADKLTL
Trigger: CAGTGTTAGTTTGTCAGCTAGCCAACATGCTTGGCAAACTAGATTGGATAAAATCTCGAACATGGCGTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR TCA 72 bp GTGAAGGTAATTTTATGGTTGGGGGTCACCACCACATaGGATGAAACATTAAAGGTTGAAACTACTGTTGTA +
Preference number: 3 (lower is better)
Translates to: VKVILWLGVTTT*DETLKVETTVV
Trigger: TACAACAGTAGTTTCAACCTTTAATGTTTCATCTCATGTGGTGGTGACCCCCAACCATAAAATTACCTTCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR GCA 72 bp GAAATTGCTCAAAAAGTACCTAACCTTAACTCTTACTaGCTTTATCAGAGTTTAAACGCCATGTTCGAGATT +
Preference number: 3 (lower is better)
Translates to: EIAQKVPNLNSY*LYQSLNAMFEI
Trigger: AATCTCGAACATGGCGTTTAAACTCTGATAAAGGCAGTAAGAGTTAAGGTTAGGTACTTTTTGAGCAATTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR GCA 90 bp ATCTGGCCTGCAATCCTGGAGGCAGCTGTATCCTCACCAATAACAGACAACCCGCCCCCAGGGCCAGGCTaGTCCAGGCACAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: IWPAILEAAVSSPITDNPPPGPG*SRHRLP
Trigger: AGGAAGCCTGTGCCTGGAGCAGCCTGGCCCTGGGGG...CGGGTTGTCTGTTATTGGTGAGGATACAGCTGCCTCCAGGATTGCAGGCCAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR TCA 90 bp CTTCTACCTGAGGACTTGGAGCAGTTGGCAGAAGTTTCCTGTTCAGATCTGTCTCAGGGCATGCGCCGCTaGCCTGTGCAGGCTGGCGAA +
Preference number: 4 (lower is better)
Translates to: LLPEDLEQLAEVSCSDLSQGMRR*PVQAGE
Trigger: TTCGCCAGCCTGCACAGGTCAGCGGCGCATGCCCTG...AGACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR CCA 90 bp ATCTGGCCTGCAATCCTGGAGGCAGCTGTATCCTCACCAATAACAGACAACCCGCTGACCTGTGCAGGCTaGCGAAGTCGTGCAGCCACT +
Preference number: 4 (lower is better)
Translates to: IWPAILEAAVSSPITDNPLTCAG*RSRAAT
Trigger: AGTGGCTGCACGACTTCGCCAGCCTGCACAGGTCAG...CGGGTTGTCTGTTATTGGTGAGGATACAGCTGCCTCCAGGATTGCAGGCCAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR GCA 90 bp ATCTGGCCTGCAATCCTGGAGGCAGCTGTATCCTCACCAATAACAGACAACCCGGGTAGGCCGCCTCCTTaGGTTCTATCTCGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: IWPAILEAAVSSPITDNPGRPPP*VLSRAG
Trigger: ACCAGCACGAGATAGAACGCAAGGAGGCGGCCTACC...CGGGTTGTCTGTTATTGGTGAGGATACAGCTGCCTCCAGGATTGCAGGCCAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR TCA 90 bp AATTTCCAACTTAGTTGTTCCCAACTCTGGTTTTGCCGCACTGCCTACAGTACACAGGCACAGGCTTCCTaGACATCCCGAGGCACCTCG +
Preference number: 4 (lower is better)
Translates to: NFQLSCSQLWFCRTAYSTQAQAS*TSRGTS
Trigger: CGAGGTGCCTCGGGATGTTCAGGAAGCCTGTGCCTG...TGTACTGTAGGCAGTGCGGCAAAACCAGAGTTGGGAACAACTAAGTTGGAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR GCA 90 bp AATTTCCAACTTAGTTGTTCCCAACTCTGGTTTTGCCGCACTGCCTACAGTACACCCTGCAACTGGCCCTaGCTGAAAGCGAAGCGAACC +
Preference number: 4 (lower is better)
Translates to: NFQLSCSQLWFCRTAYSTPCNWP*LKAKRT
Trigger: GGTTCGCTTCGCTTTCAGGCAGGGCCAGTTGCAGGG...TGTACTGTAGGCAGTGCGGCAAAACCAGAGTTGGGAACAACTAAGTTGGAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR GCA 90 bp TCAATTTCCAACTTAGTTGTTCCCAACTCTGGTTTTGCCGCACTGCCTACAGTATGCACTCTGCGCCCCTaGAACTGGCCCTGCCTGAAA +
Preference number: 4 (lower is better)
Translates to: SISNLVVPNSGFAALPTVCTLRP*NWPCLK
Trigger: TTTCAGGCAGGGCCAGTTGCAGGGGCGCAGAGTGCA...TACTGTAGGCAGTGCGGCAAAACCAGAGTTGGGAACAACTAAGTTGGAAATTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CAA 72 bp CAGATACAGTCCTTCGCCTTCCTTCTACCTGAGGACTaGGAGCAGTTGGCAGAAGTTTCCTGTTCAGATCTG +
Preference number: 4 (lower is better)
Translates to: QIQSFAFLLPED*EQLAEVSCSDL
Trigger: CAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAGGAAGGCGAAGGACTGTATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR GCA 90 bp CTTCTACCTGAGGACTTGGAGCAGTTGGCAGAAGTTTCCTGTTCAGATCTGTCTAATTGTAGACATTCTTaGTTGTACCTGGTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: LLPEDLEQLAEVSCSDLSNCRHS*LYLVLA
Trigger: TGCCAGCACCAGGTACAAGCAAGAATGTCTACAATT...AGACAGATCTGAACAGGAAACTTCTGCCAACTGCTCCAAGTCCTCAGGTAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CAA 72 bp GGTCCCTTTCATCGTGTTGTTTTCCTTCTAATACTATaGGCTAGTCCTCCCATCCACTATATAAGACCATCT +
Preference number: 4 (lower is better)
Translates to: GPFHRVVFLLIL*ASPPIHYIRPS
Trigger: AGATGGTCTTATATAGTGGATGGGAGGACTAGCCAATAGTATTAGAAGGAAAACAACACGATGAAAGGGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CAA 72 bp TTTCCTGCAGGTTGCAATGTTTTATCTTTGAGGAAATaGCTCAAAAAGTACCTAACCTTAACTCTTACTGCC +
Preference number: 4 (lower is better)
Translates to: FPAGCNVLSLRK*LKKYLTLTLTA
Trigger: GGCAGTAAGAGTTAAGGTTAGGTACTTTTTGAGCAATTTCCTCAAAGATAAAACATTGCAACCTGCAGGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
3UTR CAA 72 bp TTTCTACTACTGAGTCTTCATGAGCTTTCCTGCAGGTaGCAATGTTTTATCTTTGAGGAAATTGCTCAAAAA +
Preference number: 4 (lower is better)
Translates to: FLLLSLHELSCR*QCFIFEEIAQK
Trigger: TTTTTGAGCAATTTCCTCAAAGATAAAACATTGCAACCTGCAGGAAAGCTCATGAAGACTCAGTAGTAGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 90 bp GCATGCGCCGCTGACCTGTGCAGGCTGGCGAAGTCGTGCAGCCACTaGACTCTGCGCCCCTGCAACTGGCCCTGCCTGAAAGCGAAGCGA +
Preference number: 5 (lower is better)
Translates to: ACAADLCRLAKSCSH*TLRPCNWPCLKAKR
Trigger: TCGCTTCGCTTTCAGGCAGGGCCAGTTGCAGGGGCGCAGAGTGCAGTGGCTGCACGACTTCGCCAGCCTGCACAGGTCAGCGGCGCATGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 90 bp AATGCCAGGGCATGCGCCGCTGACCTGTGCAGGCTGGCGAAGTCGTaGAGCCACTGCACTCTGCGCCCCTGCAACTGGCCCTGCCTGAAA +
Preference number: 5 (lower is better)
Translates to: NARACAADLCRLAKS*SHCTLRPCNWPCLK
Trigger: TTTCAGGCAGGGCCAGTTGCAGGGGCGCAGAGTGCAGTGGCTGCACGACTTCGCCAGCCTGCACAGGTCAGCGGCGCATGCCCTGGCATT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS TCA 90 bp GAAGCTGGTAGGCCGCCTCCTTGCGTTCTATCTCGTGCTGGTCGGTaGGCTTCTTCAGGTCCAATGCCAGGGCATGCGCCGCTGACCTGT +
Preference number: 5 (lower is better)
Translates to: EAGRPPPCVLSRAGR*ASSGPMPGHAPLTC
Trigger: ACAGGTCAGCGGCGCATGCCCTGGCATTGGACCTGAAGAAGCTCACCGACCAGCACGAGATAGAACGCAAGGAGGCGGCCTACCAGCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS CCA 90 bp CCTGGTGCTGGCATCCTCTGTAGTCTCGCACAACTCTCATATGGGTaGCAAATCTTGCGTGTAGTAGCTTCAGTCTCATCAGGTCTCGCT +
Preference number: 5 (lower is better)
Translates to: PGAGILCSLAQLSYG*QILRVVASVSSGLA
Trigger: AGCGAGACCTGATGAGACTGAAGCTACTACACGCAAGATTTGCCACCCATATGAGAGTTGTGCGAGACTACAGAGGATGCCAGCACCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR CAA 90 bp AATTTCCAACTTAGTTGTTCCCAACTCTGGTTTTGCCGCACTGCCTACAGTACAGGGCCTCTGGAGTGCTaGGCCATTTGTTCGTTGATG +
Preference number: 5 (lower is better)
Translates to: NFQLSCSQLWFCRTAYSTGPLEC*AICSLM
Trigger: CATCAACGAACAAATGGCCAAGCACTCCAGAGGCCC...TGTACTGTAGGCAGTGCGGCAAAACCAGAGTTGGGAACAACTAAGTTGGAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 90 bp CTAGGGACGATTTCTGTTAAGAGGCTGTATAATTGTAGACATTCTTaGTTGTACCTGGTGCTGGCATCCTCTGTAGTCTCGCACAACTCT +
Preference number: 5 (lower is better)
Translates to: LGTISVKRLYNCRHS*LYLVLASSVVSHNS
Trigger: AGAGTTGTGCGAGACTACAGAGGATGCCAGCACCAGGTACAAGCAAGAATGTCTACAATTATACAGCCTCTTAACAGAAATCGTCCCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS-3UTR CAA 90 bp TCACAGGGGTCACCTAAGACCTTTGGGAGACACAGGTATTTACATTATAATTCATTGGCCATTTGTTCGTaGATGAACATTAACACCCTG +
Preference number: 5 (lower is better)
Translates to: SQGSPKTFGRHRYLHYNSLAICS*MNINTL
Trigger: CAGGGTGTTAATGTTCATCAACGAACAAATGGCCAA...TGAATTATAATGTAAATACCTGTGTCTCCCAAAGGTCTTAGGTGACCCCTGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 72 bp GCATGCGCCGCTGACCTGTGCAGGCTGGCGAAGTCGTaGAGCCACTGCACTCTGCGCCCCTGCAACTGGCCC +
Preference number: 6 (lower is better)
Translates to: ACAADLCRLAKS*SHCTLRPCNWP
Trigger: GGGCCAGTTGCAGGGGCGCAGAGTGCAGTGGCTGCACGACTTCGCCAGCCTGCACAGGTCAGCGGCGCATGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 72 bp GCTGACCTGTGCAGGCTGGCGAAGTCGTGCAGCCACTaGACTCTGCGCCCCTGCAACTGGCCCTGCCTGAAA +
Preference number: 6 (lower is better)
Translates to: ADLCRLAKSCSH*TLRPCNWPCLK
Trigger: TTTCAGGCAGGGCCAGTTGCAGGGGCGCAGAGTGCAGTGGCTGCACGACTTCGCCAGCCTGCACAGGTCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS TCA 72 bp AGGCCGCCTCCTTGCGTTCTATCTCGTGCTGGTCGGTaGGCTTCTTCAGGTCCAATGCCAGGGCATGCGCCG +
Preference number: 6 (lower is better)
Translates to: RPPPCVLSRAGR*ASSGPMPGHAP
Trigger: CGGCGCATGCCCTGGCATTGGACCTGAAGAAGCTCACCGACCAGCACGAGATAGAACGCAAGGAGGCGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS CAA 72 bp AACTCCGGGCCTCTGGAGTGCTTGGCCATTTGTTCGTaGATGAACATTAACACCCTGGCATGGCGGAACCCG +
Preference number: 6 (lower is better)
Translates to: NSGPLECLAICS*MNINTLAWRNP
Trigger: CGGGTTCCGCCATGCCAGGGTGTTAATGTTCATCAACGAACAAATGGCCAAGCACTCCAGAGGCCCGGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 72 bp CTTCAGTCTCATCAGGTCTCGCTCTCTCTGCACCTCTaGGAGTTTAGTGTGGGCCAAAAGAAGCTGGTAGGC +
Preference number: 6 (lower is better)
Translates to: LQSHQVSLSLHL*EFSVGQKKLVG
Trigger: GCCTACCAGCTTCTTTTGGCCCACACTAAACTCGCAGAGGTGCAGAGAGAGCGAGACCTGATGAGACTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS CAA 90 bp GGCATCCTCTGTAGTCTCGCACAACTCTCATATGGGTGGCAAATCTaGCGTGTAGTAGCTTCAGTCTCATCAGGTCTCGCTCTCTCTGCA +
Preference number: 6 (lower is better)
Translates to: GILCSLAQLSYGWQI*RVVASVSSGLALSA
Trigger: TGCAGAGAGAGCGAGACCTGATGAGACTGAAGCTACTACACGCAAGATTTGCCACCCATATGAGAGTTGTGCGAGACTACAGAGGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS GCA 72 bp TGTAGTAGCTTCAGTCTCATCAGGTCTCGCTCTCTCTaGACCTCTGCGAGTTTAGTGTGGGCCAAAAGAAGC +
Preference number: 6 (lower is better)
Translates to: CSSFSLIRSRSL*TSASLVWAKRS
Trigger: GCTTCTTTTGGCCCACACTAAACTCGCAGAGGTGCAGAGAGAGCGAGACCTGATGAGACTGAAGCTACTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8
CDS CAA 72 bp TGTAGTCTCGCACAACTCTCATATGGGTGGCAAATCTaGCGTGTAGTAGCTTCAGTCTCATCAGGTCTCGCT +
Preference number: 6 (lower is better)
Translates to: CSLAQLSYGWQI*RVVASVSSGLA
Trigger: AGCGAGACCTGATGAGACTGAAGCTACTACACGCAAGATTTGCCACCCATATGAGAGTTGTGCGAGACTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044179.8