Pregenerated sensors for TEX12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032065Ensembl transcript IDs: ENSMUST00000034568.7, ENSMUST00000217236.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCTAGCAAGAAGAACACAGCAGTAACAGGAAAAACTTTTAGCTGGCATAGGCACAAGAGAAGATACCTGTaGACTATCAGACACCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SSKKNTAVTGKTFSWHRHKRRYL*TIRHLR Trigger: CCTCAGGTGTCTGATAGTCCACAGGTATCTTCTCTT...GTGCCTATGCCAGCTAAAAGTTTTTCCTGTTACTGCTGTGTTCTTCTTGCTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034568.7 ENSMUST00000217236.2 |
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| CDS-3UTR GCA 90 bp | TCTAGCAAGAAGAACACAGCAGTAACAGGAAAAACTTTTAGCTGGCATAGGCACCTCATCGATGTAAGATaGATCTACTGCTGCTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: SSKKNTAVTGKTFSWHRHLIDVR*IYCCSF Trigger: GAAAGAGCAGCAGTAGATGCATCTTACATCGATGAG...GTGCCTATGCCAGCTAAAAGTTTTTCCTGTTACTGCTGTGTTCTTCTTGCTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034568.7 ENSMUST00000217236.2 |
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| CDS-3UTR GCA 90 bp | TCTAGCAAGAAGAACACAGCAGTAACAGGAAAAACTTTTAGCTGGCATAGGCACATTACTGTAAACCTCTaGTTCAGGAACTCTCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SSKKNTAVTGKTFSWHRHITVNL*FRNSLF Trigger: AAAAAGAGAGTTCCTGAAGCAGAGGTTTACAGTAAT...GTGCCTATGCCAGCTAAAAGTTTTTCCTGTTACTGCTGTGTTCTTCTTGCTAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034568.7 ENSMUST00000217236.2 |
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| CDS-3UTR CAA 90 bp | TCTAGCAAGAAGAACACAGCAGTAACAGGAAAAACTTTTAGCTGGCATAGGCACAATTCTCTTGCCCTCTaGCAGTTTCTAGAGTCGGGT | + |
|
Preference number: 5 (lower is better) Translates to: SSKKNTAVTGKTFSWHRHNSLAL*QFLESG Trigger: ACCCGACTCTAGAAACTGCAAGAGGGCAAGAGAATT...GTGCCTATGCCAGCTAAAAGTTTTTCCTGTTACTGCTGTGTTCTTCTTGCTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034568.7 ENSMUST00000217236.2 |
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