RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TESCL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055826

Ensembl transcript IDs: ENSMUST00000069562.6

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp TCAAGTCCCATGTACCCTGTAGCTGCTGCAAGAGTCTaGCGGATTCAAGGGGCAGCTTCTCCAGTGTGGGTG +
Preference number: 3 (lower is better)
Translates to: SSPMYPVAAARV*RIQGAASPVWV
Trigger: CACCCACACTGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTACATGGGACTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR TCA 90 bp TACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGGCAGCTTCTCCAGTGCCCCGCTCAGCAGCCTaGACCTCTGGTGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: YPVAAARVCRIQGAASPVPRSAA*TSGAAA
Trigger: AGCAGCTGCACCAGAGGTTCAGGCTGCTGAGCGGGG...CACTGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR TCA 90 bp CCATCAAGTCCCATGTACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGCCGCCTCCTCTTTGTTaGGACTGGGCCGCAGCGGCC +
Preference number: 4 (lower is better)
Translates to: PSSPMYPVAAARVCRIQGPPPLC*DWAAAA
Trigger: GGCCGCTGCGGCCCAGTCTCAACAAAGAGGAGGCGG...CCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTACATGGGACTTGATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR TCA 90 bp GTACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGGCAGCTTCTCCAGTTGGAGCGGATCGGATTaGACTCCAAGTCCAGGATGT +
Preference number: 4 (lower is better)
Translates to: VPCSCCKSLPDSRGSFSSWSGSD*TPSPGC
Trigger: ACATCCTGGACTTGGAGTTCAATCCGATCCGCTCCA...ACTGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR TCA 90 bp ATGTACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGGCAGCTTCTCCAGCCGGAAGTAGGAGATaGTGGTCAGGAAGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: MYPVAAARVCRIQGAASPAGSRR*WSGSPG
Trigger: TCCAGGACTTCCTGACCATCATCTCCTACTTCCGGC...TGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR CCA 90 bp TACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGGCAGCTTCTCCAGTGATCCCATCGCCGTCCTaGTCGTACATGTTGAAGAGG +
Preference number: 4 (lower is better)
Translates to: YPVAAARVCRIQGAASPVIPSPS*SYMLKR
Trigger: CCTCTTCAACATGTACGACCAGGACGGCGATGGGAT...CACTGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR GCA 90 bp TTATTCTTTGAGATGAAATCCATCAAGTCCCATGTACCCTGTAGCTGCTGCAAGAACACCTCCTGGATGTaGGCCCACCATAAGTCGGTC +
Preference number: 4 (lower is better)
Translates to: LFFEMKSIKSHVPCSCCKNTSWM*AHHKSV
Trigger: GACCGACTTATGGTGGGCGCACATCCAGGAGGTGTT...CTTGCAGCAGCTACAGGGTACATGGGACTTGATGGATTTCATCTCAAAGAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR CCA 90 bp TCTTTATTCTTTGAGATGAAATCCATCAAGTCCCATGTACCCTGTAGCTGCTGCAGCAGCCTGAACCTCTaGTGCAGCTGCTTGATCTGC +
Preference number: 4 (lower is better)
Translates to: SLFFEMKSIKSHVPCSCCSSLNL*CSCLIC
Trigger: GCAGATCAAGCAGCTGCACCAGAGGTTCAGGCTGCT...GCAGCAGCTACAGGGTACATGGGACTTGATGGATTTCATCTCAAAGAATAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR TCA 90 bp TTTGAGATGAAATCCATCAAGTCCCATGTACCCTGTAGCTGCTGCAAGAGTCTGCTAGATTCAGGAAGCTaGCTTGCATCTTCACCTCCA +
Preference number: 4 (lower is better)
Translates to: FEMKSIKSHVPCSCCKSLLDSGS*LASSPP
Trigger: TGGAGGTGAAGATGCAAGTCAGCTTCCTGAATCTAG...CAGACTCTTGCAGCAGCTACAGGGTACATGGGACTTGATGGATTTCATCTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 90 bp CCGACGCCCTGGCCGCCTCCTTCAAGGCGCCCTGGGCGATGGCATTaGCGACGGAGCGCACAGTGTCTCTCTCCACTTGCGGGTGCGCCG +
Preference number: 5 (lower is better)
Translates to: PTPWPPPSRRPGRWH*RRSAQCLSPLAGAP
Trigger: CGGCGCACCCGCAAGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCCATCGCCCAGGGCGCCTTGAAGGAGGCGGCCAGGGCGTCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 90 bp TCCTCGAAGGTGATGCCCTCATACTGCTGGCCCGCCATCAGCGGCTaGTCCGACGCCCTGGCCGCCTCCTTCAAGGCGCCCTGGGCGATG +
Preference number: 5 (lower is better)
Translates to: SSKVMPSYCWPAISG*SDALAASFKAPWAM
Trigger: CATCGCCCAGGGCGCCTTGAAGGAGGCGGCCAGGGCGTCGGACCAGCCGCTGATGGCGGGCCAGCAGTATGAGGGCATCACCTTCGAGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 90 bp ATCAGCGGCTGGTCCGACGCCCTGGCCGCCTCCTTCAAGGCGCCCTaGGCGATGGCATTGGCGACGGAGCGCACAGTGTCTCTCTCCACT +
Preference number: 5 (lower is better)
Translates to: ISGWSDALAASFKAP*AMALATERTVSLST
Trigger: AGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCCATCGCCCAGGGCGCCTTGAAGGAGGCGGCCAGGGCGTCGGACCAGCCGCTGAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 90 bp ATGGCATTGGCGACGGAGCGCACAGTGTCTCTCTCCACTTGCGGGTaGGCCGACAGCAGGCTCTCCACCACCCGGCGGTACTCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: MALATERTVSLSTCG*ADSRLSTTRRYSCR
Trigger: CCTGCAGGAGTACCGCCGGGTGGTGGAGAGCCTGCTGTCGGCGCACCCGCAAGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 90 bp CTCTTCCAGGTCTTGACGAAGTCCTCGAAGGTGATGCCCTCATACTaGTGGCCCGCCATCAGCGGCTGGTCCGACGCCCTGGCCGCCTCC +
Preference number: 5 (lower is better)
Translates to: LFQVLTKSSKVMPSY*WPAISGWSDALAAS
Trigger: GGAGGCGGCCAGGGCGTCGGACCAGCCGCTGATGGCGGGCCAGCAGTATGAGGGCATCACCTTCGAGGACTTCGTCAAGACCTGGAAGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 90 bp TTCCAGGTCTTGACGAAGTCCTCGAAGGTGATGCCCTCATACTGCTaGCCCGCCATCAGCGGCTGGTCCGACGCCCTGGCCGCCTCCTTC +
Preference number: 5 (lower is better)
Translates to: FQVLTKSSKVMPSYC*PAISGWSDALAASF
Trigger: GAAGGAGGCGGCCAGGGCGTCGGACCAGCCGCTGATGGCGGGCCAGCAGTATGAGGGCATCACCTTCGAGGACTTCGTCAAGACCTGGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 90 bp GGCTGTAGGGTGGGCTGGTCCCCGCTCAGCAGCCTGAACCTCTGGTaGAGCTGCTTGATCTGCTCCCAGCTGAAGTCGCACTTGTTCAAC +
Preference number: 5 (lower is better)
Translates to: GCRVGWSPLSSLNLW*SCLICSQLKSHLFN
Trigger: GTTGAACAAGTGCGACTTCAGCTGGGAGCAGATCAAGCAGCTGCACCAGAGGTTCAGGCTGCTGAGCGGGGACCAGCCCACCCTACAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 90 bp TCTGGCTGTAGGGTGGGCTGGTCCCCGCTCAGCAGCCTGAACCTCTaGTGCAGCTGCTTGATCTGCTCCCAGCTGAAGTCGCACTTGTTC +
Preference number: 5 (lower is better)
Translates to: SGCRVGWSPLSSLNL*CSCLICSQLKSHLF
Trigger: GAACAAGTGCGACTTCAGCTGGGAGCAGATCAAGCAGCTGCACCAGAGGTTCAGGCTGCTGAGCGGGGACCAGCCCACCCTACAGCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR CAA 90 bp TACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGGCAGCTTCTCCAGTGAGACCGCTGGTCCCTTaGCCCAGGTTCCGGTTGTCG +
Preference number: 5 (lower is better)
Translates to: YPVAAARVCRIQGAASPVRPLVP*PRFRLS
Trigger: CGACAACCGGAACCTGGGCAAAGGGACCAGCGGTCT...CACTGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS TCA 90 bp TCCGGTTGTCGAAGAAGGCGCGGACGATCCTGGAGCGGATCGGATTaGACTCCAAGTCCAGGATGTTGTCGAAGCTCTCTGGCTGTAGGG +
Preference number: 5 (lower is better)
Translates to: SGCRRRRGRSWSGSD*TPSPGCCRSSLAVG
Trigger: CCCTACAGCCAGAGAGCTTCGACAACATCCTGGACTTGGAGTTCAATCCGATCCGCTCCAGGATCGTCCGCGCCTTCTTCGACAACCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 90 bp ACCACCCGGCGGTACTCCTGCAGGGTAATGATCCCATCGCCGTCCTaGTCGTACATGTTGAAGAGGAACCGCATCTTGTCCTTGCGGTTC +
Preference number: 5 (lower is better)
Translates to: TTRRYSCRVMIPSPS*SYMLKRNRILSLRF
Trigger: GAACCGCAAGGACAAGATGCGGTTCCTCTTCAACATGTACGACCAGGACGGCGATGGGATCATTACCCTGCAGGAGTACCGCCGGGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR CAA 90 bp TACCCTGTAGCTGCTGCAAGAGTCTGCCGGATTCAAGGGGCAGCTTCTCCAGTGTCCAAGTCCAGGATGTaGTCGAAGCTCTCTGGCTGT +
Preference number: 5 (lower is better)
Translates to: YPVAAARVCRIQGAASPVSKSRM*SKLSGC
Trigger: ACAGCCAGAGAGCTTCGACAACATCCTGGACTTGGA...CACTGGAGAAGCTGCCCCTTGAATCCGGCAGACTCTTGCAGCAGCTACAGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR CAA 90 bp TCTTTATTCTTTGAGATGAAATCCATCAAGTCCCATGTACCCTGTAGCTGCTGCTCCGCCTCCTCTTTGTaGAGACTGGGCCGCAGCGGC +
Preference number: 5 (lower is better)
Translates to: SLFFEMKSIKSHVPCSCCSASSL*RLGRSG
Trigger: GCCGCTGCGGCCCAGTCTCAACAAAGAGGAGGCGGA...GCAGCAGCTACAGGGTACATGGGACTTGATGGATTTCATCTCAAAGAATAAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS-3UTR CAA 90 bp TTATTCTTTGAGATGAAATCCATCAAGTCCCATGTACCCTGTAGCTGCTGCAAGTCCTGGTCGTACATGTaGAAGAGGAACCGCATCTTG +
Preference number: 5 (lower is better)
Translates to: LFFEMKSIKSHVPCSCCKSWSYM*KRNRIL
Trigger: CAAGATGCGGTTCCTCTTCAACATGTACGACCAGGA...CTTGCAGCAGCTACAGGGTACATGGGACTTGATGGATTTCATCTCAAAGAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 72 bp GTGATGCCCTCATACTGCTGGCCCGCCATCAGCGGCTaGTCCGACGCCCTGGCCGCCTCCTTCAAGGCGCCC +
Preference number: 6 (lower is better)
Translates to: VMPSYCWPAISG*SDALAASFKAP
Trigger: GGGCGCCTTGAAGGAGGCGGCCAGGGCGTCGGACCAGCCGCTGATGGCGGGCCAGCAGTATGAGGGCATCAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 90 bp TCCGACGCCCTGGCCGCCTCCTTCAAGGCGCCCTGGGCGATGGCATaGGCGACGGAGCGCACAGTGTCTCTCTCCACTTGCGGGTGCGCC +
Preference number: 6 (lower is better)
Translates to: SDALAASFKAPWAMA*ATERTVSLSTCGCA
Trigger: GGCGCACCCGCAAGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCCATCGCCCAGGGCGCCTTGAAGGAGGCGGCCAGGGCGTCGGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 72 bp GCGACGGAGCGCACAGTGTCTCTCTCCACTTGCGGGTaGGCCGACAGCAGGCTCTCCACCACCCGGCGGTAC +
Preference number: 6 (lower is better)
Translates to: ATERTVSLSTCG*ADSRLSTTRRY
Trigger: GTACCGCCGGGTGGTGGAGAGCCTGCTGTCGGCGCACCCGCAAGTGGAGAGAGACACTGTGCGCTCCGTCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 72 bp TGGTCCGACGCCCTGGCCGCCTCCTTCAAGGCGCCCTaGGCGATGGCATTGGCGACGGAGCGCACAGTGTCT +
Preference number: 6 (lower is better)
Translates to: WSDALAASFKAP*AMALATERTVS
Trigger: AGACACTGTGCGCTCCGTCGCCAATGCCATCGCCCAGGGCGCCTTGAAGGAGGCGGCCAGGGCGTCGGACCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp GGCATTGGCGACGGAGCGCACAGTGTCTCTCTCCACTaGCGGGTGCGCCGACAGCAGGCTCTCCACCACCCG +
Preference number: 6 (lower is better)
Translates to: GIGDGAHSVSLH*RVRRQQALHHP
Trigger: CGGGTGGTGGAGAGCCTGCTGTCGGCGCACCCGCAAGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 72 bp TGGCCGCCTCCTTCAAGGCGCCCTGGGCGATGGCATTaGCGACGGAGCGCACAGTGTCTCTCTCCACTTGCG +
Preference number: 6 (lower is better)
Translates to: WPPPSRRPGRWH*RRSAQCLSPLA
Trigger: CGCAAGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCCATCGCCCAGGGCGCCTTGAAGGAGGCGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp CTGGCCGCCTCCTTCAAGGCGCCCTGGGCGATGGCATaGGCGACGGAGCGCACAGTGTCTCTCTCCACTTGC +
Preference number: 6 (lower is better)
Translates to: LAASFKAPWAMA*ATERTVSLSTC
Trigger: GCAAGTGGAGAGAGACACTGTGCGCTCCGTCGCCAATGCCATCGCCCAGGGCGCCTTGAAGGAGGCGGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 72 bp GCCGACAGCAGGCTCTCCACCACCCGGCGGTACTCCTaGAGGGTAATGATCCCATCGCCGTCCTGGTCGTAC +
Preference number: 6 (lower is better)
Translates to: ADSRLSTTRRYS*RVMIPSPSWSY
Trigger: GTACGACCAGGACGGCGATGGGATCATTACCCTGCAGGAGTACCGCCGGGTGGTGGAGAGCCTGCTGTCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 72 bp TTGACGAAGTCCTCGAAGGTGATGCCCTCATACTGCTaGCCCGCCATCAGCGGCTGGTCCGACGCCCTGGCC +
Preference number: 6 (lower is better)
Translates to: LTKSSKVMPSYC*PAISGWSDALA
Trigger: GGCCAGGGCGTCGGACCAGCCGCTGATGGCGGGCCAGCAGTATGAGGGCATCACCTTCGAGGACTTCGTCAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 72 bp GTCTTGACGAAGTCCTCGAAGGTGATGCCCTCATACTaGTGGCCCGCCATCAGCGGCTGGTCCGACGCCCTG +
Preference number: 6 (lower is better)
Translates to: VLTKSSKVMPSY*WPAISGWSDAL
Trigger: CAGGGCGTCGGACCAGCCGCTGATGGCGGGCCAGCAGTATGAGGGCATCACCTTCGAGGACTTCGTCAAGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 72 bp AGGGTGGGCTGGTCCCCGCTCAGCAGCCTGAACCTCTaGTGCAGCTGCTTGATCTGCTCCCAGCTGAAGTCG +
Preference number: 6 (lower is better)
Translates to: RVGWSPLSSLNL*CSCLICSQLKS
Trigger: CGACTTCAGCTGGGAGCAGATCAAGCAGCTGCACCAGAGGTTCAGGCTGCTGAGCGGGGACCAGCCCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp TGGAAGGTGATCTCCTCCGCCAGACCGCTGGTCCCTTaGCCCAGGTTCCGGTTGTCGAAGAAGGCGCGGACG +
Preference number: 6 (lower is better)
Translates to: WKVISSARPLVP*PRFRLSKKART
Trigger: CGTCCGCGCCTTCTTCGACAACCGGAACCTGGGCAAAGGGACCAGCGGTCTGGCGGAGGAGATCACCTTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 90 bp GTGATCTCCTCCGCCAGACCGCTGGTCCCTTTGCCCAGGTTCCGGTaGTCGAAGAAGGCGCGGACGATCCTGGAGCGGATCGGATTGAAC +
Preference number: 6 (lower is better)
Translates to: VISSARPLVPLPRFR*SKKARTILERIGLN
Trigger: GTTCAATCCGATCCGCTCCAGGATCGTCCGCGCCTTCTTCGACAACCGGAACCTGGGCAAAGGGACCAGCGGTCTGGCGGAGGAGATCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 72 bp ACACCTCCTGGATGTGCGCCCACCATAAGTCGGTCCTaGTCTCGCGCTCCCACTCCTCCTTGGACGAAAGGG +
Preference number: 6 (lower is better)
Translates to: TPPGCAPTISRS*SRAPTPPWTKG
Trigger: CCCTTTCGTCCAAGGAGGAGTGGGAGCGCGAGAGCAGGACCGACTTATGGTGGGCGCACATCCAGGAGGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 90 bp CGGACGATCCTGGAGCGGATCGGATTGAACTCCAAGTCCAGGATGTaGTCGAAGCTCTCTGGCTGTAGGGTGGGCTGGTCCCCGCTCAGC +
Preference number: 6 (lower is better)
Translates to: RTILERIGLNSKSRM*SKLSGCRVGWSPLS
Trigger: GCTGAGCGGGGACCAGCCCACCCTACAGCCAGAGAGCTTCGACAACATCCTGGACTTGGAGTTCAATCCGATCCGCTCCAGGATCGTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 72 bp CAGCTGAAGTCGCACTTGTTCAACACCTCCTGGATGTaGGCCCACCATAAGTCGGTCCTGCTCTCGCGCTCC +
Preference number: 6 (lower is better)
Translates to: QLKSHLFNTSWM*AHHKSVLLSRS
Trigger: GGAGCGCGAGAGCAGGACCGACTTATGGTGGGCGCACATCCAGGAGGTGTTGAACAAGTGCGACTTCAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS GCA 72 bp TGGTCCCCGCTCAGCAGCCTGAACCTCTGGTGCAGCTaGTTGATCTGCTCCCAGCTGAAGTCGCACTTGTTC +
Preference number: 6 (lower is better)
Translates to: WSPLSSLNLWCS*LICSQLKSHLF
Trigger: GAACAAGTGCGACTTCAGCTGGGAGCAGATCAAGCAGCTGCACCAGAGGTTCAGGCTGCTGAGCGGGGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp CTGGAGCGGATCGGATTGAACTCCAAGTCCAGGATGTaGTCGAAGCTCTCTGGCTGTAGGGTGGGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: LERIGLNSKSRM*SKLSGCRVGWS
Trigger: GGACCAGCCCACCCTACAGCCAGAGAGCTTCGACAACATCCTGGACTTGGAGTTCAATCCGATCCGCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 90 bp TTCCGGTTGTCGAAGAAGGCGCGGACGATCCTGGAGCGGATCGGATaGAACTCCAAGTCCAGGATGTTGTCGAAGCTCTCTGGCTGTAGG +
Preference number: 6 (lower is better)
Translates to: FRLSKKARTILERIG*NSKSRMLSKLSGCR
Trigger: CCTACAGCCAGAGAGCTTCGACAACATCCTGGACTTGGAGTTCAATCCGATCCGCTCCAGGATCGTCCGCGCCTTCTTCGACAACCGGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 90 bp AAGCTGACTTGCATCTTCACCTCCAATTCGAGGCTCTTCCAGGTCTaGACGAAGTCCTCGAAGGTGATGCCCTCATACTGCTGGCCCGCC +
Preference number: 6 (lower is better)
Translates to: KLTCIFTSNSRLFQV*TKSSKVMPSYCWPA
Trigger: GGCGGGCCAGCAGTATGAGGGCATCACCTTCGAGGACTTCGTCAAGACCTGGAAGAGCCTCGAATTGGAGGTGAAGATGCAAGTCAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CCA 72 bp CGGTACTCCTGCAGGGTAATGATCCCATCGCCGTCCTaGTCGTACATGTTGAAGAGGAACCGCATCTTGTCC +
Preference number: 6 (lower is better)
Translates to: RYSCRVMIPSPS*SYMLKRNRILS
Trigger: GGACAAGATGCGGTTCCTCTTCAACATGTACGACCAGGACGGCGATGGGATCATTACCCTGCAGGAGTACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp TCGAAGAAGGCGCGGACGATCCTGGAGCGGATCGGATaGAACTCCAAGTCCAGGATGTTGTCGAAGCTCTCT +
Preference number: 6 (lower is better)
Translates to: SKKARTILERIG*NSKSRMLSKLS
Trigger: AGAGAGCTTCGACAACATCCTGGACTTGGAGTTCAATCCGATCCGCTCCAGGATCGTCCGCGCCTTCTTCGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp AGGGTAATGATCCCATCGCCGTCCTGGTCGTACATGTaGAAGAGGAACCGCATCTTGTCCTTGCGGTTCTGC +
Preference number: 6 (lower is better)
Translates to: RVMIPSPSWSYM*KRNRILSLRFC
Trigger: GCAGAACCGCAAGGACAAGATGCGGTTCCTCTTCAACATGTACGACCAGGACGGCGATGGGATCATTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6
CDS CAA 72 bp TGCATCTTCACCTCCAATTCGAGGCTCTTCCAGGTCTaGACGAAGTCCTCGAAGGTGATGCCCTCATACTGC +
Preference number: 6 (lower is better)
Translates to: CIFTSNSRLFQV*TKSSKVMPSYC
Trigger: GCAGTATGAGGGCATCACCTTCGAGGACTTCGTCAAGACCTGGAAGAGCCTCGAATTGGAGGTGAAGATGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069562.6