Pregenerated sensors for TESC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029359Ensembl transcript IDs: ENSMUST00000031304.14, ENSMUST00000124648.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTaGACGGGCAGCAGGCAGCAGGTCAGTGGCAGAGGGCGATGGTCT | + |
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Preference number: 1 (lower is better) Translates to: NIRPRSPPASSHPLP*TGSRQQVSGRGRWS Trigger: AGACCATCGCCCTCTGCCACTGACCTGCTGCCTGCTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR TCA 90 bp | GGCAGCAGGCAGCAGGTCAGTGGCAGAGGGCGATGGTCTCCATGTTaGGGAAACGAATGTGCATCTTGGTCTCGATGTCGATGCCCTGCC | + |
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Preference number: 1 (lower is better) Translates to: GSRQQVSGRGRWSPC*GNECASWSRCRCPA Trigger: GGCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACCTGCTGCCTGCTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR GCA 90 bp | GGTCAGTGGCAGAGGGCGATGGTCTCCATGTTGAGGAAACGAATGTaGATCTTGGTCTCGATGTCGATGCCCTGCCAGATCTTCAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: GQWQRAMVSMLRKRM*ILVSMSMPCQIFRK Trigger: CTTCCTGAAGATCTGGCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR CAA 90 bp | GAACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTaGCACGGGCAGCAGGCAGCAGGTCAGTGGCAGAGGGCGATGGTC | + |
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Preference number: 2 (lower is better) Translates to: EHPSSVTPSFQPPPP*HGQQAAGQWQRAMV Trigger: GACCATCGCCCTCTGCCACTGACCTGCTGCCTGCTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCAGTGGCAGAGGGCGATGGTCTCCATGTTGAGGAAACGAATGTGCATCTTGAGCCACCCCCTCCCTTaGACGGGCAGCAGGCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: GQWQRAMVSMLRKRMCILSHPLP*TGSRQQ Trigger: CTGCTGCCTGCTGCCCGTGCAAGGGAGGGGGTGGCT...CAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR CAA 90 bp | GGGCAGCAGGCAGCAGGTCAGTGGCAGAGGGCGATGGTCTCCATGTaGAGGAAACGAATGTGCATCTTGGTCTCGATGTCGATGCCCTGC | + |
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Preference number: 2 (lower is better) Translates to: GQQAAGQWQRAMVSM*RKRMCILVSMSMPC Trigger: GCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACCTGCTGCCTGCTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR CAA 90 bp | TGGCAGAGGGCGATGGTCTCCATGTTGAGGAAACGAATGTGCATCTaGGTCTCGATGTCGATGCCCTGCCAGATCTTCAGGAAGTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: WQRAMVSMLRKRMCI*VSMSMPCQIFRKSS Trigger: TGAGGACTTCCTGAAGATCTGGCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR-3UTR TCA 90 bp | GAGTCCCACACACCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTGGAAGTCCTCAAAGGTaGTCCCCTCGTACACCTGGT | + |
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Preference number: 2 (lower is better) Translates to: ESHTPHPTRRITEEGLLIGSPQR*SPRTPG Trigger: ACCAGGTGTACGAGGGGATCACCTTTGAGGACTTCC...AATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGGTGTGTGGGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR-3UTR CAA 90 bp | CTGAACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGCAGCCACCCCCTCCCTaGCACGGGCAGCAGGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LNIRPRSPPASSHPLPCTQPPPP*HGQQAA Trigger: TGCTGCCTGCTGCCCGTGCAAGGGAGGGGGTGGCTG...CGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTTCAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| 3UTR-3UTR CAA 90 bp | GCGATGGTCTCCATGTTGAGGAAACGAATGTGCATCTTGGTCTCGATGTCGATGCAGCCACCCCCTCCCTaGCACGGGCAGCAGGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: AMVSMLRKRMCILVSMSMQPPPP*HGQQAA Trigger: TGCTGCCTGCTGCCCGTGCAAGGGAGGGGGTGGCTG...CATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR TCA 72 bp | CGATGCCCTGCCAGATCTTCAGGAAGTCCTCAAAGGTaGTCCCCTCGTACACCTGGTCCGGTTCCATCTGCC | + |
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Preference number: 3 (lower is better) Translates to: RCPARSSGSPQR*SPRTPGPVPSA Trigger: GGCAGATGGAACCGGACCAGGTGTACGAGGGGATCACCTTTGAGGACTTCCTGAAGATCTGGCAGGGCATCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR TCA 72 bp | CAGCAGGTCAGTGGCAGAGGGCGATGGTCTCCATGTTaGGGAAACGAATGTGCATCTTGGTCTCGATGTCGA | + |
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Preference number: 3 (lower is better) Translates to: QQVSGRGRWSPC*GNECASWSRCR Trigger: TCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACCTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| 3UTR GCA 72 bp | CAGAGGGCGATGGTCTCCATGTTGAGGAAACGAATGTaGATCTTGGTCTCGATGTCGATGCCCTGCCAGATC | + |
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Preference number: 3 (lower is better) Translates to: QRAMVSMLRKRM*ILVSMSMPCQI Trigger: GATCTGGCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS-3UTR CCA 90 bp | CGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGCAGGGCCCCACGCACACGCTaGCCGCCTCCATCATGGCCC | + |
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Preference number: 4 (lower is better) Translates to: RPRSPPASSHPLPCTGSRAPRTR*PPPSWP Trigger: GGGCCATGATGGAGGCGGCCAGCGTGTGCGTGGGGC...CCTGCTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS-3UTR CCA 90 bp | GAACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGTGGCCGCCTCCATCATaGCCCCGTCTGCAATGGACC | + |
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Preference number: 4 (lower is better) Translates to: EHPSSVTPSFQPPPPLHGWPPPS*PRLQWT Trigger: GGTCCATTGCAGACGGGGCCATGATGGAGGCGGCCA...CCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS-3UTR TCA 90 bp | CCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGCAGCAGCTTCTCCTTTCGTaGCAGCTCCACCTGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: PSSVTPSFQPPPPLHGQQQLLLS*QLHLFL Trigger: GAGGAACAGGTGGAGCTGTCACGAAAGGAGAAGCTG...CTGCTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR GCA 90 bp | AACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCCATCATGGCCCCGTCTaGAATGGACCGAGCCGACTC | + |
|
Preference number: 4 (lower is better) Translates to: NIRPRSPPASSHPLPCTGHHGPV*NGPSRL Trigger: GAGTCGGCTCGGTCCATTGCAGACGGGGCCATGATG...GCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS-3UTR TCA 90 bp | CATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGCAGCTTCTCCTTTCGTaGCAGCTCCACCTGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: HPSSVTPSFQPPPPLHGQQLLLS*QLHLFL Trigger: GAGGAACAGGTGGAGCTGTCACGAAAGGAGAAGCTG...CTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR TCA 90 bp | CGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGCAGGGACTCCTTTTCAATGTaGGGGTTTCCCGAGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RPRSPPASSHPLPCTGSRDSFSM*GFPESS Trigger: GCTGCTCTCGGGAAACCCTCACATTGAAAAGGAGTC...CCTGCTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR TCA 90 bp | CTGAACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGTCAGGGACATTGTTaGAGTTCTCCTTGCGAATGG | + |
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Preference number: 4 (lower is better) Translates to: LNIRPRSPPASSHPLPCTGQGHC*SSPCEW Trigger: CCATTCGCAAGGAGAACTTCAACAATGTCCCTGACC...CGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTTCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR GCA 90 bp | GTTACTGATTGTCACAGAAGCCCAGGCATAGGGCTGAACATCCGTCCTCGGTCAAGGAGAAGCCGGTCTTaGCCTCGAGCTCCCGCACCT | + |
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Preference number: 4 (lower is better) Translates to: VTDCHRSPGIGLNIRPRSRRSRS*PRAPAP Trigger: AGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCT...TGACCGAGGACGGATGTTCAGCCCTATGCCTGGGCTTCTGTGACAATCAGTAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CCA 90 bp | GGTCAGTGGCAGAGGGCGATGGTCTCCATGTTGAGGAAACGAATGTGCATCTTGGTTCCTCGCCCAGGGTaGTGTCGATGGGCCGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: GQWQRAMVSMLRKRMCILVPRPG*CRWAGS Trigger: ACTTCCGGCCCATCGACACCACCCTGGGCGAGGAAC...CAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS-3UTR GCA 90 bp | CACACACCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTGTCACAAGGAGAAGCCGGTCTTaGCCTCGAGCTCCCGCACCT | + |
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Preference number: 4 (lower is better) Translates to: HTPHPTRRITEEGLLIVTRRSRS*PRAPAP Trigger: AGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCT...TGTGACAATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGGTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CCA 90 bp | CACACACCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTGTCACAGTTCCTCGCCCAGGGTaGTGTCGATGGGCCGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: HTPHPTRRITEEGLLIVTVPRPG*CRWAGS Trigger: ACTTCCGGCCCATCGACACCACCCTGGGCGAGGAAC...TGTGACAATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGGTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| 3UTR CAA 72 bp | GCAGCAGGTCAGTGGCAGAGGGCGATGGTCTCCATGTaGAGGAAACGAATGTGCATCTTGGTCTCGATGTCG | + |
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Preference number: 4 (lower is better) Translates to: AAGQWQRAMVSM*RKRMCILVSMS Trigger: CGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGCCCTCTGCCACTGACCTGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS-3UTR CCA 90 bp | CACACACCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTGTCACAATCCCCTCGTACACCTaGTCCGGTTCCATCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: HTPHPTRRITEEGLLIVTIPSYT*SGSICP Trigger: GGGGCAGATGGAACCGGACCAGGTGTACGAGGGGAT...TGTGACAATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGGTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| 3UTR CAA 72 bp | GCGATGGTCTCCATGTTGAGGAAACGAATGTGCATCTaGGTCTCGATGTCGATGCCCTGCCAGATCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: AMVSMLRKRMCI*VSMSMPCQIFR Trigger: CCTGAAGATCTGGCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS-3UTR TCA 90 bp | AGGGTTACTGATTGTCACAGAAGCCCAGGCATAGGGCTGAACATCCGTCCTCGGCGATGGTCTCCATGTTaGGGAAACGAATGTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: RVTDCHRSPGIGLNIRPRRWSPC*GNECAS Trigger: AGATGCACATTCGTTTCCTCAACATGGAGACCATCG...CCGAGGACGGATGTTCAGCCCTATGCCTGGGCTTCTGTGACAATCAGTAACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS-3UTR GCA 90 bp | GAGTCCCACACACCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTTGGTCTCGATGTCGATaGCCTGCCAGATCTTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ESHTPHPTRRITEEGLLIWSRCR*PARSSG Trigger: TCCTGAAGATCTGGCAGGGCATCGACATCGAGACCA...AATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGGTGTGTGGGACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS-3UTR TCA 90 bp | GAGTCCCACACACCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTGGTCAGGGACATTGTTaGAGTTCTCCTTGCGAATGG | + |
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Preference number: 4 (lower is better) Translates to: ESHTPHPTRRITEEGLLIGQGHC*SSPCEW Trigger: CCATTCGCAAGGAGAACTTCAACAATGTCCCTGACC...AATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGGTGTGTGGGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | CCCTCGTACACCTGGTCCGGTTCCATCTGCCCCACGCACACGCTGGCCGCCTCCGAGGAGAAGCCGGTCTaGCCCTCGAGCTCCCGCACC | + |
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Preference number: 5 (lower is better) Translates to: PSYTWSGSICPTHTLAASEEKPV*PSSSRT Trigger: GGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTC...GGAGGCGGCCAGCGTGTGCGTGGGGCAGATGGAACCGGACCAGGTGTACGAGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS GCA 90 bp | ACCTCCGATGCAGCTGCTCTATCTGGTCCGAGGAGAAGCCGGTCTTaGCCTCGAGCTCCCGCACCTCCTCGGACGCCGAGTGGGCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: TSDAAALSGPRRSRS*PRAPAPPRTPSGQR Trigger: GCGCTGCCCACTCGGCGTCCGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGCATCGGAGGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CCA 90 bp | TGGTCCCCGCTTAGCTGCTTGAACCTCCGATGCAGCTGCTCTATCTaGTCCGAGGAGAAGCCGGTCTTGCCCTCGAGCTCCCGCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: WSPLSCLNLRCSCSI*SEEKPVLPSSSRTS Trigger: GGAGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGCATCGGAGGTTCAAGCAGCTAAGCGGGGACCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | GCTGAACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACTTGGATCGGATCGGGTaGAGCTCCAGGTCAGGGACA | + |
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Preference number: 5 (lower is better) Translates to: AEHPSSVTPSFQPPPPLHLDRIG*SSRSGT Trigger: TGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAA...GTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTTCAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS GCA 90 bp | ATGGTGGGCTGGTCCCCGCTTAGCTGCTTGAACCTCCGATGCAGCTaGTCTATCTGGTCCGAGGAGAAGCCGGTCTTGCCCTCGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: MVGWSPLSCLNLRCS*SIWSEEKPVLPSSS Trigger: GGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGCATCGGAGGTTCAAGCAGCTAAGCGGGGACCAGCCCACCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | CATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGTCCAGGTCAGGGACATaGTTGAAGTTCTCCTTGCGA | + |
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Preference number: 5 (lower is better) Translates to: HPSSVTPSFQPPPPLHGQSRSGT*LKFSLR Trigger: TCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGA...CTGCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | AACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGGAAGTCCTCAAAGTaGATCTCATCGGCCAGACCG | + |
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Preference number: 5 (lower is better) Translates to: NIRPRSPPASSHPLPCTGRKSSK*ISSARP Trigger: CGGTCTGGCCGATGAGATCAACTTTGAGGACTTCCT...GCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | AACATCCGTCCTCGGTCACCCCCAGCTTCCAGCCACCCCCTCCCTTGCACGGGCAGGTCAGGGACATTGTaGAAGTTCTCCTTGCGAATG | + |
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Preference number: 5 (lower is better) Translates to: NIRPRSPPASSHPLPCTGRSGTL*KFSLRM Trigger: CATTCGCAAGGAGAACTTCAACAATGTCCCTGACCT...GCCCGTGCAAGGGAGGGGGTGGCTGGAAGCTGGGGGTGACCGAGGACGGATGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | CCACACCCCACGAGGAGGATAACTGAAGAAGGGTTACTGATTGTCACAGAAGCCGAGGAGAAGCCGGTCTaGCCCTCGAGCTCCCGCACC | + |
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Preference number: 5 (lower is better) Translates to: PHPTRRITEEGLLIVTEAEEKPV*PSSSRT Trigger: GGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTC...GGCTTCTGTGACAATCAGTAACCCTTCTTCAGTTATCCTCCTCGTGGGGTGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | ATGCCCTGCCAGATCTTCAGGAAGTCCTCAAAGGTGATCCCCTCGTACACCTGGTTGGATCGGATCGGGTaGAGCTCCAGGTCAGGGACA | + |
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Preference number: 5 (lower is better) Translates to: MPCQIFRKSSKVIPSYTWLDRIG*SSRSGT Trigger: TGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAA...CCAGGTGTACGAGGGGATCACCTTTGAGGACTTCCTGAAGATCTGGCAGGGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS CCA 90 bp | TCCAGGTCAGGGACATTGTTGAAGTTCTCCTTGCGAATGGTGGGCTaGTCCCCGCTTAGCTGCTTGAACCTCCGATGCAGCTGCTCTATC | + |
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Preference number: 5 (lower is better) Translates to: SRSGTLLKFSLRMVG*SPLSCLNLRCSCSI Trigger: GATAGAGCAGCTGCATCGGAGGTTCAAGCAGCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | AGGGTTACTGATTGTCACAGAAGCCCAGGCATAGGGCTGAACATCCGTCCTCGGTTTCGCAGGTTCCTGTaGTCGAAGAAGGCACGGACG | + |
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Preference number: 5 (lower is better) Translates to: RVTDCHRSPGIGLNIRPRFRRFL*SKKART Trigger: CGTCCGTGCCTTCTTCGACAACAGGAACCTGCGAAA...CCGAGGACGGATGTTCAGCCCTATGCCTGGGCTTCTGTGACAATCAGTAACCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | CTCGATGTCGATGCCCTGCCAGATCTTCAGGAAGTCCTCAAAGGTGATCCCCTCTTTCGCAGGTTCCTGTaGTCGAAGAAGGCACGGACG | + |
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Preference number: 5 (lower is better) Translates to: LDVDALPDLQEVLKGDPLFRRFL*SKKART Trigger: CGTCCGTGCCTTCTTCGACAACAGGAACCTGCGAAA...GAGGGGATCACCTTTGAGGACTTCCTGAAGATCTGGCAGGGCATCGACATCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | TGCCAGATCTTCAGGAAGTCCTCAAAGGTGATCCCCTCGTACACCTGGTCCGGTAGGTCAGGGACATTGTaGAAGTTCTCCTTGCGAATG | + |
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Preference number: 5 (lower is better) Translates to: CQIFRKSSKVIPSYTWSGRSGTL*KFSLRM Trigger: CATTCGCAAGGAGAACTTCAACAATGTCCCTGACCT...ACCGGACCAGGTGTACGAGGGGATCACCTTTGAGGACTTCCTGAAGATCTGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS-3UTR CAA 90 bp | GCGATGGTCTCCATGTTGAGGAAACGAATGTGCATCTTGGTCTCGATGTCGATGAGGAAGTCCTCAAAGTaGATCTCATCGGCCAGACCG | + |
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Preference number: 5 (lower is better) Translates to: AMVSMLRKRMCILVSMSMRKSSK*ISSARP Trigger: CGGTCTGGCCGATGAGATCAACTTTGAGGACTTCCT...CATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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| CDS CAA 90 bp | AACCTCCGATGCAGCTGCTCTATCTGGTCCGAGGAGAAGCCGGTCTaGCCCTCGAGCTCCCGCACCTCCTCGGACGCCGAGTGGGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: NLRCSCSIWSEEKPV*PSSSRTSSDAEWAA Trigger: CGCTGCCCACTCGGCGTCCGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGCATCGGAGGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS GCA 72 bp | GCAGCTGCTCTATCTGGTCCGAGGAGAAGCCGGTCTTaGCCTCGAGCTCCCGCACCTCCTCGGACGCCGAGT | + |
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Preference number: 6 (lower is better) Translates to: AAALSGPRRSRS*PRAPAPPRTPS Trigger: ACTCGGCGTCCGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CCA 72 bp | ACACCTGGTCCGGTTCCATCTGCCCCACGCACACGCTaGCCGCCTCCATCATGGCCCCGTCTGCAATGGACC | + |
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Preference number: 6 (lower is better) Translates to: TPGPVPSAPRTR*PPPSWPRLQWT Trigger: GGTCCATTGCAGACGGGGCCATGATGGAGGCGGCCAGCGTGTGCGTGGGGCAGATGGAACCGGACCAGGTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS CAA 72 bp | TGCAGCTGCTCTATCTGGTCCGAGGAGAAGCCGGTCTaGCCCTCGAGCTCCCGCACCTCCTCGGACGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: CSCSIWSEEKPV*PSSSRTSSDAE Trigger: CTCGGCGTCCGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CCA 72 bp | CCATCTGCCCCACGCACACGCTGGCCGCCTCCATCATaGCCCCGTCTGCAATGGACCGAGCCGACTCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: PSAPRTRWPPPS*PRLQWTEPTPF Trigger: AAAAGGAGTCGGCTCGGTCCATTGCAGACGGGGCCATGATGGAGGCGGCCAGCGTGTGCGTGGGGCAGATGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS GCA 72 bp | CACGCACACGCTGGCCGCCTCCATCATGGCCCCGTCTaGAATGGACCGAGCCGACTCCTTTTCAATGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: HAHAGRLHHGPV*NGPSRLLFNVR Trigger: CCTCACATTGAAAAGGAGTCGGCTCGGTCCATTGCAGACGGGGCCATGATGGAGGCGGCCAGCGTGTGCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS CCA 72 bp | CTTAGCTGCTTGAACCTCCGATGCAGCTGCTCTATCTaGTCCGAGGAGAAGCCGGTCTTGCCCTCGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LSCLNLRCSCSI*SEEKPVLPSSS Trigger: GGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACCAGATAGAGCAGCTGCATCGGAGGTTCAAGCAGCTAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CCA 72 bp | ACACGCTGGCCGCCTCCATCATGGCCCCGTCTGCAATaGACCGAGCCGACTCCTTTTCAATGTGAGGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: TRWPPPSWPRLQ*TEPTPFQCEGF Trigger: GAAACCCTCACATTGAAAAGGAGTCGGCTCGGTCCATTGCAGACGGGGCCATGATGGAGGCGGCCAGCGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS CAA 90 bp | CGGATCGGGTTGAGCTCCAGGTCAGGGACATTGTTGAAGTTCTCCTaGCGAATGGTGGGCTGGTCCCCGCTTAGCTGCTTGAACCTCCGA | + |
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Preference number: 6 (lower is better) Translates to: RIGLSSRSGTLLKFS*RMVGWSPLSCLNLR Trigger: TCGGAGGTTCAAGCAGCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 90 bp | CGGACGATTTTGGATCGGATCGGGTTGAGCTCCAGGTCAGGGACATaGTTGAAGTTCTCCTTGCGAATGGTGGGCTGGTCCCCGCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: RTILDRIGLSSRSGT*LKFSLRMVGWSPLS Trigger: GCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CCA 72 bp | GGGACATTGTTGAAGTTCTCCTTGCGAATGGTGGGCTaGTCCCCGCTTAGCTGCTTGAACCTCCGATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GTLLKFSLRMVG*SPLSCLNLRCS Trigger: GCTGCATCGGAGGTTCAAGCAGCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 72 bp | CGCAGGTTCCTGTTGTCGAAGAAGGCACGGACGATTTaGGATCGGATCGGGTTGAGCTCCAGGTCAGGGACA | + |
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Preference number: 6 (lower is better) Translates to: RRFLLSKKARTI*DRIGLSSRSGT Trigger: TGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCCGTGCCTTCTTCGACAACAGGAACCTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 90 bp | ACGATTTTGGATCGGATCGGGTTGAGCTCCAGGTCAGGGACATTGTaGAAGTTCTCCTTGCGAATGGTGGGCTGGTCCCCGCTTAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: TILDRIGLSSRSGTL*KFSLRMVGWSPLSC Trigger: GCAGCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 72 bp | TTGAGCTCCAGGTCAGGGACATTGTTGAAGTTCTCCTaGCGAATGGTGGGCTGGTCCCCGCTTAGCTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSSRSGTLLKFS*RMVGWSPLSCL Trigger: CAAGCAGCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 72 bp | TTGGATCGGATCGGGTTGAGCTCCAGGTCAGGGACATaGTTGAAGTTCTCCTTGCGAATGGTGGGCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LDRIGLSSRSGT*LKFSLRMVGWS Trigger: GGACCAGCCCACCATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 90 bp | GATCCCTTTCGCAGGTTCCTGTTGTCGAAGAAGGCACGGACGATTTaGGATCGGATCGGGTTGAGCTCCAGGTCAGGGACATTGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: DPFRRFLLSKKARTI*DRIGLSSRSGTLLK Trigger: CTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCCGTGCCTTCTTCGACAACAGGAACCTGCGAAAGGGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 72 bp | TCGAAGAAGGCACGGACGATTTTGGATCGGATCGGGTaGAGCTCCAGGTCAGGGACATTGTTGAAGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: SKKARTILDRIG*SSRSGTLLKFS Trigger: GGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCCGTGCCTTCTTCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS CAA 90 bp | TTCCTGTTGTCGAAGAAGGCACGGACGATTTTGGATCGGATCGGGTaGAGCTCCAGGTCAGGGACATTGTTGAAGTTCTCCTTGCGAATG | + |
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Preference number: 6 (lower is better) Translates to: FLLSKKARTILDRIG*SSRSGTLLKFSLRM Trigger: CATTCGCAAGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCCGTGCCTTCTTCGACAACAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS TCA 72 bp | GCAGCTCCTCCACCACATTTCTATACTCTTCCAGGGTaGTGCGGCCGTCACTGTCCGAATCATACATATGAA | + |
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Preference number: 6 (lower is better) Translates to: AAPPPHFYTLPG*CGRHCPNHTYE Trigger: TTCATATGTATGATTCGGACAGTGACGGCCGCATCACCCTGGAAGAGTATAGAAATGTGGTGGAGGAGCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031304.14 |
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| CDS TCA 72 bp | AGGGTGATGCGGCCGTCACTGTCCGAATCATACATATaGAACAGAAATTTCAGCTTCTCCTTTCGTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: RVMRPSLSESYI*NRNFSFSFRDS Trigger: GCTGTCACGAAAGGAGAAGCTGAAATTTCTGTTTCATATGTATGATTCGGACAGTGACGGCCGCATCACCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031304.14 ENSMUST00000124648.8 |
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| CDS TCA 72 bp | TCCTCCACCACTTTACATTTCTATACTCTTCCAGGGTaGTGCGGCCGTCACTGTCCGAATCATACATATGAA | + |
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Preference number: 6 (lower is better) Translates to: SSTTLHFYTLPG*CGRHCPNHTYE Trigger: TTCATATGTATGATTCGGACAGTGACGGCCGCATCACCCTGGAAGAGTATAGAAATGTAAAGTGGTGGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124648.8 |
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