RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TERT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021611

Ensembl transcript IDs: ENSMUST00000022104.9, ENSMUST00000221522.2, ENSMUST00000222251.2, ENSMUST00000223303.2

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGAACAGGAACGTAGCCAGGATCCTCTCCCTCAGACGGTGCTCTaGAGCGGGGACACGGTCCTTCCCTGCCAGGGACTGCTGTGCAGG +
Preference number: 1 (lower is better)
Translates to: PEQERSQDPLPQTVL*SGDTVLPCQGLLCR
Trigger: CCTGCACAGCAGTCCCTGGCAGGGAAGGACCGTGTCCCCGCTGCAGAGCACCGTCTGAGGGAGAGGATCCTGGCTACGTTCCTGTTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221522.2
3UTR TCA 90 bp ATGAAGCGCAGTCTGCAGATGGGCATGGCTAGCCAGGTGTCCTGGTaGTGCCTGACCTCCTCTTGTGACAGCTCCCGTAGCCGCACTCTC +
Preference number: 1 (lower is better)
Translates to: MKRSLQMGMASQVSW*CLTSSCDSSRSRTL
Trigger: GAGAGTGCGGCTACGGGAGCTGTCACAAGAGGAGGTCAGGCATCACCAGGACACCTGGCTAGCCATGCCCATCTGCAGACTGCGCTTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 90 bp CACTCTGCATGGTTCACCAGCAGCTGTTGGAACAGGGGCCGCATCTaGCAGTATCGACGCGATAGACGGTGTGTCCTGCAGAGTGGTCCT +
Preference number: 1 (lower is better)
Translates to: HSAWFTSSCWNRGRI*QYRRDRRCVLQSGP
Trigger: AGGACCACTCTGCAGGACACACCGTCTATCGCGTCGATACTGGCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAACCATGCAGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 90 bp CCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTaGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCCACTA +
Preference number: 1 (lower is better)
Translates to: PRNLTPVHCPSAHVH*VHSSCAGASGSLPL
Trigger: TAGTGGCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR CCA 90 bp GGCTGGAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTaGACTTGGCCTTGGCTATCTCTCCGGACCACTGCATACTGGCGG +
Preference number: 1 (lower is better)
Translates to: GWRSERVVTCLLKDL*TWPWLSLRTTAYWR
Trigger: CCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 90 bp TCTGCAGCGGGGACACGGTCCTTCCCCGGGCTGCTGCGGAGCCAGTaGCAATCCTCTACTTTCATCTTCCACATCAGTTCCTGCAGTGAT +
Preference number: 1 (lower is better)
Translates to: SAAGTRSFPGLLRSQ*QSSTFIFHISSCSD
Trigger: ATCACTGCAGGAACTGATGTGGAAGATGAAAGTAGAGGATTGCCACTGGCTCCGCAGCAGCCCGGGGAAGGACCGTGTCCCCGCTGCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR TCA 90 bp TATAACTCATGTTCACAATGGGCCGCAGGCCGTTGGGCTTGGGGATaGAGCGCAGTCTGCAGATGGGCATGGCTAGCCAGGTGTCCTGGT +
Preference number: 1 (lower is better)
Translates to: YNSCSQWAAGRWAWG*SAVCRWAWLARCPG
Trigger: ACCAGGACACCTGGCTAGCCATGCCCATCTGCAGACTGCGCTTCATCCCCAAGCCCAACGGCCTGCGGCCCATTGTGAACATGAGTTATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 90 bp CAGAGACAGGCCCGAAGAAAACCATATACCTGCCAGGGACTGCTGTaGAGGCGGAGCAAATCCATGAGGTGCGGTGGGCTGGTGTTCAAG +
Preference number: 1 (lower is better)
Translates to: QRQARRKPYTCQGLL*RRSKSMRCGGLVFK
Trigger: CTTGAACACCAGCCCACCGCACCTCATGGATTTGCTCCGCCTGCACAGCAGTCCCTGGCAGGTATATGGTTTTCTTCGGGCCTGTCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR TCA 90 bp AACCATATACCTGCCAGGGACTGCTGTGCAGGCGGAGCAAATCCATaGGGTGCGGTGGGCTGGTGTTCAAGGCATCTGTCACCTGTTGGT +
Preference number: 1 (lower is better)
Translates to: NHIPARDCCAGGANP*GAVGWCSRHLSPVG
Trigger: ACCAACAGGTGACAGATGCCTTGAACACCAGCCCACCGCACCTCATGGATTTGCTCCGCCTGCACAGCAGTCCCTGGCAGGTATATGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR GCA 90 bp TATACCTGCCAGGGACTGCTGTGCAGGCGGAGCAAATCCATGAGGTaGGGTGGGCTGGTGTTCAAGGCATCTGTCACCTGTTGGTTTGCT +
Preference number: 1 (lower is better)
Translates to: YTCQGLLCRRSKSMR*GGLVFKASVTCWFA
Trigger: AGCAAACCAACAGGTGACAGATGCCTTGAACACCAGCCCACCGCACCTCATGGATTTGCTCCGCCTGCACAGCAGTCCCTGGCAGGTATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR CCA 90 bp GAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTTaGCTATCTCTCCGGACCACTGCATACTGGCGGATACAGTACGTG +
Preference number: 1 (lower is better)
Translates to: ERVVTCLLKDLWTWP*LSLRTTAYWRIQYV
Trigger: CACGTACTGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 90 bp AGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTTaGCCTTGGCTATCTCTCCGGACCACTGCATACTGGCGGATACAG +
Preference number: 1 (lower is better)
Translates to: RSERVVTCLLKDLWT*PWLSLRTTAYWRIQ
Trigger: CTGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 90 bp AGGAGTCTGACATATTGGCACTCTGCATGGTTCACCAGCAGCTGTTaGAACAGGGGCCGCATCTGCCAGTATCGACGCGATAGACGGTGT +
Preference number: 1 (lower is better)
Translates to: RSLTYWHSAWFTSSC*NRGRICQYRRDRRC
Trigger: ACACCGTCTATCGCGTCGATACTGGCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAACCATGCAGAGTGCCAATATGTCAGACTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 90 bp GACTTGTGGACTTGGCCTTGGCTATCTCTCCGGACCACTGCATACTaGCGGATACAGTACGTGCTCTCCGAGTGCCTGATCATATTGGCA +
Preference number: 1 (lower is better)
Translates to: DLWTWPWLSLRTTAY*RIQYVLSECLIILA
Trigger: TGCCAATATGATCAGGCACTCGGAGAGCACGTACTGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR GCA 90 bp ATGACAACGGAGTTCCTCAGTGCACTGGCATCTGAATCCTGCAGATaGTTAAGGAACTGGCCCATGTATGGCTGGAGGTCAGAGAGGGTG +
Preference number: 1 (lower is better)
Translates to: MTTEFLSALASESCR*LRNWPMYGWRSERV
Trigger: CACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACTCCGTTGTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR TCA 90 bp CTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATaGCACAGAGGTTTGGAGGATGACCTAGCCTCACAACTGACCAGT +
Preference number: 1 (lower is better)
Translates to: LLQETRHWDNLPYHP*HRGLEDDLASQLTS
Trigger: ACTGGTCAGTTGTGAGGCTAGGTCATCCTCCAAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR TCA 90 bp AGTTTATCATGCACCCATACTCAGGAACGCCATGGACCAGGGTGCTaGGGAAGGTTTTTGCTTGGTCCAAGTGAGGCGTCACCAACAGAA +
Preference number: 1 (lower is better)
Translates to: SLSCTHTQERHGPGC*GRFLLGPSEASPTE
Trigger: TTCTGTTGGTGACGCCTCACTTGGACCAAGCAAAAACCTTCCTCAGCACCCTGGTCCATGGCGTTCCTGAGTATGGGTGCATGATAAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 90 bp AAGAAGTCAAACAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTaGTCGATGACAACGGAGTTCCTCAGTGCACTGGCATCTGAATCC +
Preference number: 1 (lower is better)
Translates to: KKSNRLLLLSFIEML*SMTTEFLSALASES
Trigger: GGATTCAGATGCCAGTGCACTGAGGAACTCCGTTGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTGTTTGACTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 90 bp GTTACTGTCAAACGCTGCCAAGGAATCTTAGCTTCAGAGAAGGCATaGAACATCCCTAGCGTGATCCCTGTGGACTTCATCACCCTTCAC +
Preference number: 1 (lower is better)
Translates to: VTVKRCQGILASEKA*NIPSVIPVDFITLH
Trigger: GTGAAGGGTGATGAAGTCCACAGGGATCACGCTAGGGATGTTCCATGCCTTCTCTGAAGCTAAGATTCCTTGGCAGCGTTTGACAGTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR GCA 90 bp AACGAGATGAACTTCTTTAAGTTCTTAAAGAAGCGGCGCTCATTGTaGCTGGTACCCCAGAGACTAGCAGACACCACCTTGCAGAGACAG +
Preference number: 1 (lower is better)
Translates to: NEMNFFKFLKKRRSL*LVPQRLADTTLQRQ
Trigger: CTGTCTCTGCAAGGTGGTGTCTGCTAGTCTCTGGGGTACCAGGCACAATGAGCGCCGCTTCTTTAAGAACTTAAAGAAGTTCATCTCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR GCA 90 bp ACCAACAGAAAGTCATCAACAAAACGTAAAAGCAACCCATCCCGCTaGACCTCAGCAAACAGCTTGTTCTCCATGTCTCCGAAACACAGA +
Preference number: 1 (lower is better)
Translates to: TNRKSSTKRKSNPSR*TSANSLFSMSPKHR
Trigger: TCTGTGTTTCGGAGACATGGAGAACAAGCTGTTTGCTGAGGTGCAGCGGGATGGGTTGCTTTTACGTTTTGTTGATGACTTTCTGTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 90 bp GAGGTTCTTCCTAACACGCTGGTCAAAGGGAAGCTGAATCACACATaGATGGAACCTGTAGGCCTGAAGCAGGAAGATCTTGTATATATT +
Preference number: 1 (lower is better)
Translates to: EVLPNTLVKGKLNHT*MEPVGLKQEDLVYI
Trigger: AATATATACAAGATCTTCCTGCTTCAGGCCTACAGGTTCCATGCATGTGTGATTCAGCTTCCCTTTGACCAGCGTGTTAGGAAGAACCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR TCA 90 bp ATGCATGGAACCTGTAGGCCTGAAGCAGGAAGATCTTGTATATATTaGTGCAGACTGTCTGGAGGCTGTTCACCTGCAAGTCTAGAAATA +
Preference number: 1 (lower is better)
Translates to: MHGTCRPEAGRSCIY*CRLSGGCSPASLEI
Trigger: TATTTCTAGACTTGCAGGTGAACAGCCTCCAGACAGTCTGCATCAATATATACAAGATCTTCCTGCTTCAGGCCTACAGGTTCCATGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GTGAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCGATAGGCTGGAGCCCTaGGGGATGCCCTGGCACTGC +
Preference number: 2 (lower is better)
Translates to: VKRLQGPGISHLSTVPVPDRLEP*GMPWHC
Trigger: GCAGTGCCAGGGCATCCCCCAGGGCTCCAGCCTATC...GGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp CACCTCCAAAGTCTGAGTGTCCAGCAGCAAGCCACACCAGGGAAACAGGCAGTGCCTTCCCCGGGCTGCTaGGGAGCCAGTGGCAATCCT +
Preference number: 2 (lower is better)
Translates to: HLQSLSVQQQATPGKQAVPSPGC*GASGNP
Trigger: AGGATTGCCACTGGCTCCGCAGCAGCCCGGGGAAGG...CACTGCCTGTTTCCCTGGTGTGGCTTGCTGCTGGACACTCAGACTTTGGAGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp CTCCAAAGTCTGAGTGTCCAGCAGCAAGCCACACCAGGGAAACAGGCAGTGAGCGGCGGAGCAAATCCATaGGGTGCGGTGGGCTGGTGT +
Preference number: 2 (lower is better)
Translates to: LQSLSVQQQATPGKQAVSGGANP*GAVGWC
Trigger: ACACCAGCCCACCGCACCTCATGGATTTGCTCCGCC...GCTCACTGCCTGTTTCCCTGGTGTGGCTTGCTGCTGGACACTCAGACTTTGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GTGAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCTGGCCCATGTATGGCTaGAGGTCAGAGAGGGTGGTG +
Preference number: 2 (lower is better)
Translates to: VKRLQGPGISHLSTVPVPWPMYG*RSERVV
Trigger: CACCACCCTCTCTGACCTCCAGCCATACATGGGCCA...GGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAAAGGCCCGCCAGGTCCTGTAGATGCTTAAGGAACTaGCCCATGTATGGCTGGAGG +
Preference number: 2 (lower is better)
Translates to: WVSGPEHAHAAQRPARSCRCLRN*PMYGWR
Trigger: CCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCT...ACAGGACCTGGCGGGCCTTTGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GCCTTAACAAAGTACATCCTGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAGACTGCAGAGCAGGGTaGATAGGCTGGAGCCCTGGG +
Preference number: 2 (lower is better)
Translates to: ALTKYILGVWSRARTRSTDCRAG*IGWSPG
Trigger: CCCAGGGCTCCAGCCTATCCACCCTGCTCTGCAGTC...TGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTACTTTGTTAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GGCCTGGTAGCAGAGCCAATGTGCGGCTTCAGGAGGAAAGGAGCCAGAGGCCTTATCCATGAGGTGCGGTaGGCTGGTGTTCAAGGCATC +
Preference number: 2 (lower is better)
Translates to: GLVAEPMCGFRRKGARGLIHEVR*AGVQGI
Trigger: GATGCCTTGAACACCAGCCCACCGCACCTCATGGAT...AAGGCCTCTGGCTCCTTTCCTCCTGAAGCCGCACATTGGCTCTGCTACCAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CAA 90 bp CGGCGCTCATTGTGCCTGGTACCCCAGAGACTAGCAGACACCACCTaGCAGAGACAGGCCCGAAGAAAACCATATACCTGCCAGGGACTG +
Preference number: 2 (lower is better)
Translates to: RRSLCLVPQRLADTT*QRQARRKPYTCQGL
Trigger: CAGTCCCTGGCAGGTATATGGTTTTCTTCGGGCCTGTCTCTGCAAGGTGGTGTCTGCTAGTCTCTGGGGTACCAGGCACAATGAGCGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp CTCCAAAGTCTGAGTGTCCAGCAGCAAGCCACACCAGGGAAACAGGCAGTGAGCAGCGCAGTCTGCAGATaGGCATGGCTAGCCAGGTGT +
Preference number: 2 (lower is better)
Translates to: LQSLSVQQQATPGKQAVSSAVCR*AWLARC
Trigger: ACACCTGGCTAGCCATGCCCATCTGCAGACTGCGCT...GCTCACTGCCTGTTTCCCTGGTGTGGCTTGCTGCTGGACACTCAGACTTTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp GCCTTAACAAAGTACATCCTGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAGACCAGTCCCTCTTGTaGCGTGGATCCAGGAGTGCT +
Preference number: 2 (lower is better)
Translates to: ALTKYILGVWSRARTRSTDQSLL*RGSRSA
Trigger: AGCACTCCTGGATCCACGTCACAAGAGGGACTGGTC...TGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTACTTTGTTAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp GTGAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCCTCCCATACCACCCATaGCACAGAGGTTTGGAGGAT +
Preference number: 2 (lower is better)
Translates to: VKRLQGPGISHLSTVPVPLPYHP*HRGLED
Trigger: ATCCTCCAAACCTCTGTGTCATGGGTGGTATGGGAG...GGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp CTTTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGGCGGAGCAAATCCATaGGGTGCGGTGGGCTGGTGT +
Preference number: 2 (lower is better)
Translates to: LYDTVTQEVQEEVKQAAAGGANP*GAVGWC
Trigger: ACACCAGCCCACCGCACCTCATGGATTTGCTCCGCC...AGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGATGTCCACTGTCCCAGTaGCCATGTGCACTGGGTGCA +
Preference number: 2 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGCPLSQ*PCALGA
Trigger: TGCACCCAGTGCACATGGGCACTGGGACAGTGGACA...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GGCCTGGTAGCAGAGCCAATGTGCGGCTTCAGGAGGAAAGGAGCCAGAGGCCTTCAGGAAACAAGGCACTaGGACAATCTCCCATACCAC +
Preference number: 2 (lower is better)
Translates to: GLVAEPMCGFRRKGARGLQETRH*DNLPYH
Trigger: GTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTG...AAGGCCTCTGGCTCCTTTCCTCCTGAAGCCGCACATTGGCTCTGCTACCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TGCAGATGCTTAAGGAACTGGCCCATGTATGGCTGGAGGTCAGAGAGGGTGGTGTGGCCCATGTATGGCTaGAGGTCAGAGAGGGTGGTG +
Preference number: 2 (lower is better)
Translates to: CRCLRNWPMYGWRSERVVWPMYG*RSERVV
Trigger: CACCACCCTCTCTGACCTCCAGCCATACATGGGCCA...CACCACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp CACCTCCAAAGTCTGAGTGTCCAGCAGCAAGCCACACCAGGGAAACAGGCAGTGGAACTGGCCCATGTATaGCTGGAGGTCAGAGAGGGT +
Preference number: 2 (lower is better)
Translates to: HLQSLSVQQQATPGKQAVELAHV*LEVREG
Trigger: ACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTC...CACTGCCTGTTTCCCTGGTGTGGCTTGCTGCTGGACACTCAGACTTTGGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CAA 90 bp GAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTaGGCCTTGGCTATCTCTCCGGACCACTGCATACTGGCGGATACA +
Preference number: 2 (lower is better)
Translates to: EVREGGDLSPKGLVD*ALAISPDHCILADT
Trigger: TGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CAA 90 bp TATGGCTGGAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTaGTGGACTTGGCCTTGGCTATCTCTCCGGACCACTGCATACTGG +
Preference number: 2 (lower is better)
Translates to: YGWRSERVVTCLLKD*WTWPWLSLRTTAYW
Trigger: CCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTCCAGCCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp AGGACTTGTGGACTTGGCCTTGGCTATCTCTCCGGACCACTGCATACTGGCGGATTGAGCCCAGAAAGATaGTCTCCACCAGTCTCCTGG +
Preference number: 2 (lower is better)
Translates to: RTCGLGLGYLSGPLHTGGLSPER*SPPVSW
Trigger: CCAGGAGACTGGTGGAGATCATCTTTCTGGGCTCAA...TCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp AGCACGCACACGCAGCACAAAGGCCCGCCAGGTCCTGTAGATGTCATTCATACCTTGAGCCCAGAAAGATaGTCTCCACCAGTCTCCTGG +
Preference number: 2 (lower is better)
Translates to: STHTQHKGPPGPVDVIHTLSPER*SPPVSW
Trigger: CCAGGAGACTGGTGGAGATCATCTTTCTGGGCTCAA...GGTATGAATGACATCTACAGGACCTGGCGGGCCTTTGTGCTGCGTGTGCGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp AGCTCTGGTACCCATGCTATAACTCATGTTCACAATGGGCCGCAGGCCGTTGGGAGTGCCCATGTGCACTaGGTGCACTCCTCATGTGCT +
Preference number: 2 (lower is better)
Translates to: SSGTHAITHVHNGPQAVGSAHVH*VHSSCA
Trigger: AGCACATGAGGAGTGCACCCAGTGCACATGGGCACT...CCCAACGGCCTGCGGCCCATTGTGAACATGAGTTATAGCATGGGTACCAGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp ACATCCTGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAAAGGCCCGCCAGGTCTCTCTCTGTCTTGTaGTTTTGTGCTTATGGATCA +
Preference number: 2 (lower is better)
Translates to: TSWVSGPEHAHAAQRPARSLSVL*FCAYGS
Trigger: TGATCCATAAGCACAAAAGCACAAGACAGAGAGAGA...CCTGGCGGGCCTTTGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR CAA 90 bp AAGGATGGTCATTGTCGCCTCTGGGAGCTTCCGGCACAGCAGTTTTaGGGCTGTCCTCAGAGGTCCCAGGAGACATTTGTAGATGACAGA +
Preference number: 2 (lower is better)
Translates to: KDGHCRLWELPAQQF*GCPQRSQETFVDDR
Trigger: TCTGTCATCTACAAATGTCTCCTGGGACCTCTGAGGACAGCCCAAAAACTGCTGTGCCGGAAGCTCCCAGAGGCGACAATGACCATCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp AACAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTGCTCGATGACAACGGAGAGACGCTGGGTGAAATaGTGGGCCTGCTTCCTTCTG +
Preference number: 2 (lower is better)
Translates to: NRLLLLSFIEMLCSMTTERRWVK*WACFLL
Trigger: CAGAAGGAAGCAGGCCCAGCATTTCACCCAGCGTCT...CTCCGTTGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGCTTGTGGACTTGGCCTTaGCTATCTCTCCGGACCACT +
Preference number: 2 (lower is better)
Translates to: LRHCDAGSAGRSQTGCCCLWTWP*LSLRTT
Trigger: AGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAA...GCAGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp CTCCAAAGTCTGAGTGTCCAGCAGCAAGCCACACCAGGGAAACAGGCAGTGAGCCTCCTAAAGGACTTGTaGACTTGGCCTTGGCTATCT +
Preference number: 2 (lower is better)
Translates to: LQSLSVQQQATPGKQAVSLLKDL*TWPWLS
Trigger: AGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAG...GCTCACTGCCTGTTTCCCTGGTGTGGCTTGCTGCTGGACACTCAGACTTTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp ACAACGGAGTTCCTCAGTGCACTGGCATCTGAATCCTGCAGATGCTTAAGGAACTGGCCCATGTATGGCTaGAGGTCAGAGAGGGTGGTG +
Preference number: 2 (lower is better)
Translates to: TTEFLSALASESCRCLRNWPMYG*RSERVV
Trigger: CACCACCCTCTCTGACCTCCAGCCATACATGGGCCA...GTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACTCCGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TCTCCTAAAGGACTTGTGGACTTGGCCTTGGCTATCTCTCCGGACCACTGCATAGAACTGGCCCATGTATaGCTGGAGGTCAGAGAGGGT +
Preference number: 2 (lower is better)
Translates to: SPKGLVDLALAISPDHCIELAHV*LEVREG
Trigger: ACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTC...TATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp ACAACGGAGTTCCTCAGTGCACTGGCATCTGAATCCTGCAGATGCTTAAGGAACTTCACCAGCAGCTGTTaGAACAGGGGCCGCATCTGC +
Preference number: 2 (lower is better)
Translates to: TTEFLSALASESCRCLRNFTSSC*NRGRIC
Trigger: GCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAA...GTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACTCCGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp AGGGATAGGATCTGCCTCCCTGAGGGCATCAGGAAAGAAATCAAGCCTGTTACAGTCTGCAGATGGGCATaGCTAGCCAGGTGTCCTGGT +
Preference number: 2 (lower is better)
Translates to: RDRICLPEGIRKEIKPVTVCRWA*LARCPG
Trigger: ACCAGGACACCTGGCTAGCCATGCCCATCTGCAGAC...TGTAACAGGCTTGATTTCTTTCCTGATGCCCTCAGGGAGGCAGATCCTATCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GCAGCAGGATGCTTGGCTGGAGATGATGCCCAGAAAGAATGTGAGGTTCTTCCTAGAGTCTTGAGACGCTaGGTGAAATGCTGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: AAGCLAGDDAQKECEVLPRVLRR*VKCWAC
Trigger: GCAGGCCCAGCATTTCACCCAGCGTCTCAAGACTCT...AGGAAGAACCTCACATTCTTTCTGGGCATCATCTCCAGCCAAGCATCCTGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTCCTCAGTGCACTGGCATCTGAATCCTGCAGATGCTTAAGGAACTGGCCCATGAGAGTCTTGAGACGCTaGGTGAAATGCTGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: FLSALASESCRCLRNWPMRVLRR*VKCWAC
Trigger: GCAGGCCCAGCATTTCACCCAGCGTCTCAAGACTCT...CATGGGCCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGCACTGAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp GTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGCTCTCATTCATCTCCCATACCACCCATaGCACAGAGGTTTGGAGGAT +
Preference number: 2 (lower is better)
Translates to: VTQEVQEEVKQAAAALIHLPYHP*HRGLED
Trigger: ATCCTCCAAACCTCTGTGTCATGGGTGGTATGGGAG...ATGAATGAGAGCAGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp AAGTCAAACAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTGCTCGATGACAAGCCAGGTGTCCTGGTaGTGCCTGACCTCCTCTTGT +
Preference number: 2 (lower is better)
Translates to: KSNRLLLLSFIEMLCSMTSQVSW*CLTSSC
Trigger: ACAAGAGGAGGTCAGGCATCACCAGGACACCTGGCT...TGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTGTTTGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp CACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTCAGGAGCCAGGTGTCCTGGTaGTGCCTGACCTCCTCTTGT +
Preference number: 2 (lower is better)
Translates to: HREVHHCLLQVYHAPILRSQVSW*CLTSSC
Trigger: ACAAGAGGAGGTCAGGCATCACCAGGACACCTGGCT...CCTGAGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp TCCATCAGCCAGAACAGGAACGTAGCCAGGATCCTCTCCCTCAGACGGTGCTCTTTCCACATCAGTTCCTaGAGTGATAGCTTGCCGTAT +
Preference number: 2 (lower is better)
Translates to: SISQNRNVARILSLRRCSFHISS*SDSLPY
Trigger: ATACGGCAAGCTATCACTGCAGGAACTGATGTGGAA...AGAGCACCGTCTGAGGGAGAGGATCCTGGCTACGTTCCTGTTCTGGCTGATGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp ACCTGTCACCAATCTTTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAATTCCCTGCCAGGGACTaGTGTGCAGGCGGAGCAAAT +
Preference number: 2 (lower is better)
Translates to: TCHQSLRHCDAGSAGRSQFPARD*CAGGAN
Trigger: ATTTGCTCCGCCTGCACAGCAGTCCCTGGCAGGGAA...TTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAGATTGGTGACAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221522.2
3UTR-3UTR CCA 90 bp GCAGCAGGATGCTTGGCTGGAGATGATGCCCAGAAAGAATGTGAGGTTCTTCCTTTGTGGACTTGGCCTTaGCTATCTCTCCGGACCACT +
Preference number: 2 (lower is better)
Translates to: AAGCLAGDDAQKECEVLPLWTWP*LSLRTT
Trigger: AGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAA...AGGAAGAACCTCACATTCTTTCTGGGCATCATCTCCAGCCAAGCATCCTGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGACTCCTAAAGGACTTGTaGACTTGGCCTTGGCTATCT +
Preference number: 2 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGLLKDL*TWPWLS
Trigger: AGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAG...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGCAGATGCTTAAGGAACTaGCCCATGTATGGCTGGAGG +
Preference number: 2 (lower is better)
Translates to: LRHCDAGSAGRSQTGCCCRCLRN*PMYGWR
Trigger: CCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCT...GCAGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TCCCGCTGCACCTCAGCAAACAGCTTGTTCTCCATGTCTCCGAAACACAGACTGAGATGCTTAAGGAACTaGCCCATGTATGGCTGGAGG +
Preference number: 2 (lower is better)
Translates to: SRCTSANSLFSMSPKHRLRCLRN*PMYGWR
Trigger: CCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCT...CAGTCTGTGTTTCGGAGACATGGAGAACAAGCTGTTTGCTGAGGTGCAGCGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CAA 90 bp ACAAAACGTAAAAGCAACCCATCCCGCTGCACCTCAGCAAACAGCTaGTTCTCCATGTCTCCGAAACACAGACTGCAGAGCAGGGTGGAT +
Preference number: 2 (lower is better)
Translates to: TKRKSNPSRCTSANS*FSMSPKHRLQSRVD
Trigger: ATCCACCCTGCTCTGCAGTCTGTGTTTCGGAGACATGGAGAACAAGCTGTTTGCTGAGGTGCAGCGGGATGGGTTGCTTTTACGTTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCGACCAGTCCCTCTTGTaGCGTGGATCCAGGAGTGCT +
Preference number: 2 (lower is better)
Translates to: ERNQACYRKQGTGTISHTDQSLL*RGSRSA
Trigger: AGCACTCCTGGATCCACGTCACAAGAGGGACTGGTC...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp TCCCGCTGCACCTCAGCAAACAGCTTGTTCTCCATGTCTCCGAAACACAGACTGCTGGCATCTGAATCCTaGAGATGCTTAAGGAACTGG +
Preference number: 2 (lower is better)
Translates to: SRCTSANSLFSMSPKHRLLASES*RCLRNW
Trigger: CCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAG...CAGTCTGTGTTTCGGAGACATGGAGAACAAGCTGTTTGCTGAGGTGCAGCGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp ACCTGTCACCAATCTTTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAACTCCGAAACACAGACTaGAGAGCAGGGTGGATAGGC +
Preference number: 2 (lower is better)
Translates to: TCHQSLRHCDAGSAGRSQLRNTD*RAGWIG
Trigger: GCCTATCCACCCTGCTCTGCAGTCTGTGTTTCGGAG...TTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAGATTGGTGACAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp CACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGCTCTCATCTCCTAAAGGACTTGTaGACTTGGCCTTGGCTATCT +
Preference number: 2 (lower is better)
Translates to: HCDAGSAGRSQTGCCCSHLLKDL*TWPWLS
Trigger: AGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAG...ATGAGAGCAGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGCAGTTCCTCAGTGCACTaGCATCTGAATCCTGCAGAT +
Preference number: 2 (lower is better)
Translates to: LRHCDAGSAGRSQTGCCCSSSVH*HLNPAD
Trigger: ATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACT...GCAGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GCTCCACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTAACTCATGTTCACAATaGGCCGCAGGCCGTTGGGCT +
Preference number: 2 (lower is better)
Translates to: APQGSSPLSSASLSCTHTNSCSQ*AAGRWA
Trigger: AGCCCAACGGCCTGCGGCCCATTGTGAACATGAGTT...AGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CAA 90 bp CCCAACGAGATGAACTTCTTTAAGTTCTTAAAGAAGCGGCGCTCATaGTGCCTGGTACCCCAGAGACTAGCAGACACCACCTTGCAGAGA +
Preference number: 2 (lower is better)
Translates to: PNEMNFFKFLKKRRS*CLVPQRLADTTLQR
Trigger: TCTCTGCAAGGTGGTGTCTGCTAGTCTCTGGGGTACCAGGCACAATGAGCGCCGCTTCTTTAAGAACTTAAAGAAGTTCATCTCGTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR CAA 90 bp ATACTCAGGAACGCCATGGACCAGGGTGCTGAGGAAGGTTTTTGCTaGGTCCAAGTGAGGCGTCACCAACAGAAAGTCATCAACAAAACG +
Preference number: 2 (lower is better)
Translates to: ILRNAMDQGAEEGFC*VQVRRHQQKVINKT
Trigger: CGTTTTGTTGATGACTTTCTGTTGGTGACGCCTCACTTGGACCAAGCAAAAACCTTCCTCAGCACCCTGGTCCATGGCGTTCCTGAGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TGTCACCAATCTTTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGAACTGGCCCATGTATaGCTGGAGGTCAGAGAGGGT +
Preference number: 2 (lower is better)
Translates to: CHQSLRHCDAGSAGRSQTELAHV*LEVREG
Trigger: ACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTC...TGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAGATTGGTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTAACAAAGTACATCCTGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAAAGGCATCTGTCACCTGTTaGTTTGCTGTTCGAAACCTG +
Preference number: 2 (lower is better)
Translates to: LTKYILGVWSRARTRSTKASVTC*FAVRNL
Trigger: CAGGTTTCGAACAGCAAACCAACAGGTGACAGATGC...CTTTGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTACTTTGTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp ACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGCTCTCATTCATAGACTGGCATCTGAATCCTaGAGATGCTTAAGGAACTGG +
Preference number: 2 (lower is better)
Translates to: TQEVQEEVKQAAAALIHRLASES*RCLRNW
Trigger: CCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAG...TCTATGAATGAGAGCAGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp GCAGCAGGATGCTTGGCTGGAGATGATGCCCAGAAAGAATGTGAGGTTCTTCCTTCTGCAAGTTTATCATaGACCCATACTCAGGAACGC +
Preference number: 2 (lower is better)
Translates to: AAGCLAGDDAQKECEVLPSASLS*THTQER
Trigger: GCGTTCCTGAGTATGGGTGCATGATAAACTTGCAGA...AGGAAGAACCTCACATTCTTTCTGGGCATCATCTCCAGCCAAGCATCCTGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp AGGGATAGGATCTGCCTCCCTGAGGGCATCAGGAAAGAAATCAAGCCTGTTACAAGTAGGTACCCACTATaGTTACTGTCAAACGCTGCC +
Preference number: 2 (lower is better)
Translates to: RDRICLPEGIRKEIKPVTSRYPL*LLSNAA
Trigger: GGCAGCGTTTGACAGTAACCATAGTGGGTACCTACT...TGTAACAGGCTTGATTTCTTTCCTGATGCCCTCAGGGAGGCAGATCCTATCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GAGATGAACTTCTTTAAGTTCTTAAAGAAGCGGCGCTCATTGTGCCTGGTACCCTTGTGGACTTGGCCTTaGCTATCTCTCCGGACCACT +
Preference number: 2 (lower is better)
Translates to: EMNFFKFLKKRRSLCLVPLWTWP*LSLRTT
Trigger: AGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAA...GGGTACCAGGCACAATGAGCGCCGCTTCTTTAAGAACTTAAAGAAGTTCATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp ATGGAACCTGTAGGCCTGAAGCAGGAAGATCTTGTATATATTGATGCAGACTGTAGCGCAGTCTGCAGATaGGCATGGCTAGCCAGGTGT +
Preference number: 2 (lower is better)
Translates to: MEPVGLKQEDLVYIDADCSAVCR*AWLARC
Trigger: ACACCTGGCTAGCCATGCCCATCTGCAGACTGCGCT...ACAGTCTGCATCAATATATACAAGATCTTCCTGCTTCAGGCCTACAGGTTCCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CAA 90 bp CATTCCTGGATTCTTGACCTTCAGGATAGCATAGCAGCAGGATGCTaGGCTGGAGATGATGCCCAGAAAGAATGTGAGGTTCTTCCTAAC +
Preference number: 2 (lower is better)
Translates to: HSWILDLQDSIAAGC*AGDDAQKECEVLPN
Trigger: GTTAGGAAGAACCTCACATTCTTTCTGGGCATCATCTCCAGCCAAGCATCCTGCTGCTATGCTATCCTGAAGGTCAAGAATCCAGGAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCGTGCTGAGGCTACAATaGCCATGTTCATCTAGCGGA +
Preference number: 2 (lower is better)
Translates to: ERNQACYRKQGTGTISHTVLRLQ*PCSSSG
Trigger: TCCGCTAGATGAACATGGGCATTGTAGCCTCAGCAC...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GCTCCACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTAGTTCCTCAGTGCACTaGCATCTGAATCCTGCAGAT +
Preference number: 2 (lower is better)
Translates to: APQGSSPLSSASLSCTHTSSSVH*HLNPAD
Trigger: ATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACT...AGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTGGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GAGGCGTCACCAACAGAAAGTCATCAACAAAACGTAAAAGCAACCCATCCCGCTAGTTCCTCAGTGCACTaGCATCTGAATCCTGCAGAT +
Preference number: 2 (lower is better)
Translates to: EASPTESHQQNVKATHPASSSVH*HLNPAD
Trigger: ATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACT...AGCGGGATGGGTTGCTTTTACGTTTTGTTGATGACTTTCTGTTGGTGACGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp CTTGGTCCAAGTGAGGCGTCACCAACAGAAAGTCATCAACAAAACGTAAAAGCACTGGGACAGGCTCCATaGTTAGGTGTGAAAAGACTC +
Preference number: 2 (lower is better)
Translates to: LGPSEASPTESHQQNVKALGQAP*LGVKRL
Trigger: GAGTCTTTTCACACCTAACCATGGAGCCTGTCCCAG...TGCTTTTACGTTTTGTTGATGACTTTCTGTTGGTGACGCCTCACTTGGACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp GCTCCACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTAAGAGCCTGTTCTTCTaGAATGTGCTCTCTGTGATG +
Preference number: 2 (lower is better)
Translates to: APQGSSPLSSASLSCTHTKSLFF*NVLSVM
Trigger: CATCACAGAGAGCACATTCCAGAAGAACAGGCTCTT...AGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTGGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp CTTGGTCCAAGTGAGGCGTCACCAACAGAAAGTCATCAACAAAACGTAAAAGCATTCTGCCCAAAGCTCTaGTACCCATGCTATAACTCA +
Preference number: 2 (lower is better)
Translates to: LGPSEASPTESHQQNVKAFCPKL*YPCYNS
Trigger: TGAGTTATAGCATGGGTACCAGAGCTTTGGGCAGAA...TGCTTTTACGTTTTGTTGATGACTTTCTGTTGGTGACGCCTCACTTGGACCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR TCA 90 bp GCTTCCCCCTATTTTATCTTTATAGTGATCTCAGTAGGTACCCACTATGGTTACGTTAGACTGACTGACTaGCTCTCTCTCTCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: ASPYFIFIVISVGTHYGYVRLTD*LSLSLS
Trigger: AGAGAGAGAGAGAGAGAGTCAGTCAGTCAGTCTAAC...GTAACCATAGTGGGTACCTACTGAGATCACTATAAAGATAAAATAGGGGGAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGGTGCTGAGGCTACAATaGCCATGTTCATCTAGCGGA +
Preference number: 2 (lower is better)
Translates to: AFISWLGVLLHSSREVAKVLRLQ*PCSSSG
Trigger: TCCGCTAGATGAACATGGGCATTGTAGCCTCAGCAC...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR CAA 90 bp CAATCCTCTACTTTCATCTTCCACATCAGTTCCTGCAGTGATAGCTaGCCGTATTTCCCCAACGAGATGAACTTCTTTAAGTTCTTAAAG +
Preference number: 2 (lower is better)
Translates to: QSSTFIFHISSCSDS*PYFPNEMNFFKFLK
Trigger: CTTTAAGAACTTAAAGAAGTTCATCTCGTTGGGGAAATACGGCAAGCTATCACTGCAGGAACTGATGTGGAAGATGAAAGTAGAGGATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCACTGGGACAGGCTCCATaGTTAGGTGTGAAAAGACTC +
Preference number: 2 (lower is better)
Translates to: FPVQYKYASPYFIFIVISLGQAP*LGVKRL
Trigger: GAGTCTTTTCACACCTAACCATGGAGCCTGTCCCAG...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp GCTTCCCCCTATTTTATCTTTATAGTGATCTCAGTAGGTACCCACTATGGTTACCCAGTAGGAAAATCCTaGTTTTATAAGTTGGCTTGG +
Preference number: 2 (lower is better)
Translates to: ASPYFIFIVISVGTHYGYPVGKS*FYKLAW
Trigger: CCAAGCCAACTTATAAAAGCAGGATTTTCCTACTGG...GTAACCATAGTGGGTACCTACTGAGATCACTATAAAGATAAAATAGGGGGAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR GCA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCACTGGCATCTGAATCCTaGAGATGCTTAAGGAACTGG +
Preference number: 2 (lower is better)
Translates to: FPVQYKYASPYFIFIVISLASES*RCLRNW
Trigger: CCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAG...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CCA 90 bp TTCCCCCTATTTTATCTTTATAGTGATCTCAGTAGGTACCCACTATGGTTACTGTTTTATAAGTTGGCTTaGTGTTTTACTACACAGCAG +
Preference number: 2 (lower is better)
Translates to: FPLFYLYSDLSRYPLWLLFYKLA*CFTTQQ
Trigger: CTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAA...CAGTAACCATAGTGGGTACCTACTGAGATCACTATAAAGATAAAATAGGGGGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR GCA 72 bp GAACGTAGCCAGGATCCTCTCCCTCAGACGGTGCTCTaGAGCGGGGACACGGTCCTTCCCCGGGCTGCTGCG +
Preference number: 3 (lower is better)
Translates to: ERSQDPLPQTVL*SGDTVLPRAAA
Trigger: CGCAGCAGCCCGGGGAAGGACCGTGTCCCCGCTGCAGAGCACCGTCTGAGGGAGAGGATCCTGGCTACGTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR GCA 72 bp AACAGGAACGTAGCCAGGATCCTCTCCCTCAGACGGTaGTCTGCAGCGGGGACACGGTCCTTCCCCGGGCTG +
Preference number: 3 (lower is better)
Translates to: NRNVARILSLRR*SAAGTRSFPGL
Trigger: CAGCCCGGGGAAGGACCGTGTCCCCGCTGCAGAGCACCGTCTGAGGGAGAGGATCCTGGCTACGTTCCTGTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR GCA 72 bp GAACGTAGCCAGGATCCTCTCCCTCAGACGGTGCTCTaGAGCGGGGACACGGTCCTTCCCTGCCAGGGACTG +
Preference number: 3 (lower is better)
Translates to: ERSQDPLPQTVL*SGDTVLPCQGL
Trigger: CAGTCCCTGGCAGGGAAGGACCGTGTCCCCGCTGCAGAGCACCGTCTGAGGGAGAGGATCCTGGCTACGTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221522.2
3UTR GCA 72 bp AACAGGAACGTAGCCAGGATCCTCTCCCTCAGACGGTaGTCTGCAGCGGGGACACGGTCCTTCCCTGCCAGG +
Preference number: 3 (lower is better)
Translates to: NRNVARILSLRR*SAAGTRSFPAR
Trigger: CCTGGCAGGGAAGGACCGTGTCCCCGCTGCAGAGCACCGTCTGAGGGAGAGGATCCTGGCTACGTTCCTGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221522.2
3UTR GCA 72 bp CACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTaGACTCCTCATGTGCTGGTGCTAGTGGATCCCTGC +
Preference number: 3 (lower is better)
Translates to: HLSTVPVPMCTG*TPHVLVLVDPC
Trigger: GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR GCA 72 bp AGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTaGCCATGTGCACTGGGTGCACTCCTCATGTGCTGG +
Preference number: 3 (lower is better)
Translates to: RAQESHTCPLSQ*PCALGALLMCW
Trigger: CCAGCACATGAGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR GCA 72 bp TGCAGAGCAGGGTGGATAGGCTGGAGCCCTGGGGGATaGCCTGGCACTGCGTATAGCACCTGTCACCAATCT +
Preference number: 3 (lower is better)
Translates to: CRAGWIGWSPGG*PGTAYSTCHQS
Trigger: AGATTGGTGACAGGTGCTATACGCAGTGCCAGGGCATCCCCCAGGGCTCCAGCCTATCCACCCTGCTCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR TCA 72 bp AGTCTGCAGATGGGCATGGCTAGCCAGGTGTCCTGGTaGTGCCTGACCTCCTCTTGTGACAGCTCCCGTAGC +
Preference number: 3 (lower is better)
Translates to: SLQMGMASQVSW*CLTSSCDSSRS
Trigger: GCTACGGGAGCTGTCACAAGAGGAGGTCAGGCATCACCAGGACACCTGGCTAGCCATGCCCATCTGCAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp TGGTTCACCAGCAGCTGTTGGAACAGGGGCCGCATCTaGCAGTATCGACGCGATAGACGGTGTGTCCTGCAG +
Preference number: 3 (lower is better)
Translates to: WFTSSCWNRGRI*QYRRDRRCVLQ
Trigger: CTGCAGGACACACCGTCTATCGCGTCGATACTGGCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp GCCCGAAGAAAACCATATACCTGCCAGGGACTGCTGTaGAGGCGGAGCAAATCCATGAGGTGCGGTGGGCTG +
Preference number: 3 (lower is better)
Translates to: ARRKPYTCQGLL*RRSKSMRCGGL
Trigger: CAGCCCACCGCACCTCATGGATTTGCTCCGCCTGCACAGCAGTCCCTGGCAGGTATATGGTTTTCTTCGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR CCA 72 bp CTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTaGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCC +
Preference number: 3 (lower is better)
Translates to: LTPVHCPSAHVH*VHSSCAGASGS
Trigger: GGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR CCA 72 bp GGGACACGGTCCTTCCCCGGGCTGCTGCGGAGCCAGTaGCAATCCTCTACTTTCATCTTCCACATCAGTTCC +
Preference number: 3 (lower is better)
Translates to: GTRSFPGLLRSQ*QSSTFIFHISS
Trigger: GGAACTGATGTGGAAGATGAAAGTAGAGGATTGCCACTGGCTCCGCAGCAGCCCGGGGAAGGACCGTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp CTGGCCCATGTATGGCTGGAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTaGGCTATCTCTCCGGACCAC +
Preference number: 3 (lower is better)
Translates to: LAHVWLEVREGGDLSPKGLVDLA*AISPDH
Trigger: GTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAG...TCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTCCAGCCATACATGGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR GCA 72 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTaGACTGGGTGCACTCCTCATGTGCTGGTGCTAGTG +
Preference number: 3 (lower is better)
Translates to: GISHLSTVPVPM*TGCTPHVLVLV
Trigger: CACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR GCA 72 bp CTTGTGGACTTGGCCTTGGCTATCTCTCCGGACCACTaGATACTGGCGGATACAGTACGTGCTCTCCGAGTG +
Preference number: 3 (lower is better)
Translates to: LVDLALAISPDH*ILADTVRALRV
Trigger: CACTCGGAGAGCACGTACTGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 72 bp ACTTGGCCTTGGCTATCTCTCCGGACCACTGCATACTaGCGGATACAGTACGTGCTCTCCGAGTGCCTGATC +
Preference number: 3 (lower is better)
Translates to: TWPWLSLRTTAY*RIQYVLSECLI
Trigger: GATCAGGCACTCGGAGAGCACGTACTGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 72 bp ACTGCTGTGCAGGCGGAGCAAATCCATGAGGTGCGGTaGGCTGGTGTTCAAGGCATCTGTCACCTGTTGGTT +
Preference number: 3 (lower is better)
Translates to: TAVQAEQIHEVR*AGVQGICHLLV
Trigger: AACCAACAGGTGACAGATGCCTTGAACACCAGCCCACCGCACCTCATGGATTTGCTCCGCCTGCACAGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp GTCACATCTGCCTTAACAAAGTACATCCTGGGTGTCTaGTCCAGAGCACGCACACGCAGCACAAAGGCCCGC +
Preference number: 3 (lower is better)
Translates to: VTSALTKYILGV*SRARTRSTKAR
Trigger: GCGGGCCTTTGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTACTTTGTTAAGGCAGATGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp CTTTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGGCTGCTGCTGTTCACCAGCAGCTGTaGGAACAGGGGCCGCATCTG +
Preference number: 3 (lower is better)
Translates to: LYDTVTQEVQEEVKQAAAVHQQL*EQGPHL
Trigger: CAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAAC...AGCAGCAGCCTGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp CACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTCAGGCGCAGGCCGTTGGGCTaGGGGATGAAGCGCAGTCTG +
Preference number: 3 (lower is better)
Translates to: HREVHHCLLQVYHAPILRRRPLG*GMKRSL
Trigger: CAGACTGCGCTTCATCCCCAAGCCCAACGGCCTGCG...CCTGAGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR TCA 72 bp TGCACCCATACTCAGGAACGCCATGGACCAGGGTGCTaGGGAAGGTTTTTGCTTGGTCCAAGTGAGGCGTCA +
Preference number: 3 (lower is better)
Translates to: CTHTQERHGPGC*GRFLLGPSEAS
Trigger: TGACGCCTCACTTGGACCAAGCAAAAACCTTCCTCAGCACCCTGGTCCATGGCGTTCCTGAGTATGGGTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp AGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTTaGCCTTGGCTATCTCTCCGGACCACTGCATACTGG +
Preference number: 3 (lower is better)
Translates to: RVVTCLLKDLWT*PWLSLRTTAYW
Trigger: CCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 72 bp TCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTaGACTTGGCCTTGGCTATCTCTCCGGACCACTGCA +
Preference number: 3 (lower is better)
Translates to: SERVVTCLLKDL*TWPWLSLRTTA
Trigger: TGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 72 bp GCACTGGCATCTGAATCCTGCAGATGCTTAAGGAACTaGCCCATGTATGGCTGGAGGTCAGAGAGGGTGGTG +
Preference number: 3 (lower is better)
Translates to: ALASESCRCLRN*PMYGWRSERVV
Trigger: CACCACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CCA 72 bp ACATATTGGCACTCTGCATGGTTCACCAGCAGCTGTTaGAACAGGGGCCGCATCTGCCAGTATCGACGCGAT +
Preference number: 3 (lower is better)
Translates to: TYWHSAWFTSSC*NRGRICQYRRD
Trigger: ATCGCGTCGATACTGGCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAACCATGCAGAGTGCCAATATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp TTCCTCAGTGCACTGGCATCTGAATCCTGCAGATGCTTAAGGAACTGGCCCATGCTTGTGGACTTGGCCTaGGCTATCTCTCCGGACCAC +
Preference number: 3 (lower is better)
Translates to: FLSALASESCRCLRNWPMLVDLA*AISPDH
Trigger: GTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAG...CATGGGCCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGCACTGAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp TCCCGCTGCACCTCAGCAAACAGCTTGTTCTCCATGTCTCCGAAACACAGACTGCCAATGCTCTGCAGCTaGCTCCACACACTCTTACGG +
Preference number: 3 (lower is better)
Translates to: SRCTSANSLFSMSPKHRLPMLCS*LHTLLR
Trigger: CCGTAAGAGTGTGTGGAGCAAGCTGCAGAGCATTGG...CAGTCTGTGTTTCGGAGACATGGAGAACAAGCTGTTTGCTGAGGTGCAGCGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp AAGAGAGTCTTGAGACGCTGGGTGAAATGCTGGGCCTaGTTCCTTCTGCCCAAAGCTCTGGTACCCATGCTA +
Preference number: 3 (lower is better)
Translates to: KRVLRRWVKCWA*FLLPKALVPML
Trigger: TAGCATGGGTACCAGAGCTTTGGGCAGAAGGAAGCAGGCCCAGCATTTCACCCAGCGTCTCAAGACTCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp AGCATGCTGAAGAGAGTCTTGAGACGCTGGGTGAAATaGTGGGCCTGCTTCCTTCTGCCCAAAGCTCTGGTA +
Preference number: 3 (lower is better)
Translates to: SMLKRVLRRWVK*WACFLLPKALV
Trigger: TACCAGAGCTTTGGGCAGAAGGAAGCAGGCCCAGCATTTCACCCAGCGTCTCAAGACTCTCTTCAGCATGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp AGGAACGCCATGGACCAGGGTGCTGAGGAAGGTTTTTaGTTGGTCCAAGTGAGGCGTCACCAACAGAAAGTC +
Preference number: 3 (lower is better)
Translates to: RNAMDQGAEEGF*LVQVRRHQQKV
Trigger: GACTTTCTGTTGGTGACGCCTCACTTGGACCAAGCAAAAACCTTCCTCAGCACCCTGGTCCATGGCGTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp GTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTTaGCTATCTCTCCGGACCACTGCATACTGGCGGATA +
Preference number: 3 (lower is better)
Translates to: VTCLLKDLWTWP*LSLRTTAYWRI
Trigger: TATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp AGGAACGCCATGGACCAGGGTGCTGAGGAAGGTTTTTGCTTGGTCCAAGTGAGGGGCATCTGTCACCTGTaGGTTTGCTGTTCGAAACCT +
Preference number: 3 (lower is better)
Translates to: RNAMDQGAEEGFCLVQVRGICHL*VCCSKP
Trigger: AGGTTTCGAACAGCAAACCAACAGGTGACAGATGCC...CCTCACTTGGACCAAGCAAAAACCTTCCTCAGCACCCTGGTCCATGGCGTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp GCCTTAACAAAGTACATCCTGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAATGCTGAAGAGAGTCTaGAGACGCTGGGTGAAATGC +
Preference number: 3 (lower is better)
Translates to: ALTKYILGVWSRARTRSTMLKRV*RRWVKC
Trigger: GCATTTCACCCAGCGTCTCAAGACTCTCTTCAGCAT...TGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTACTTTGTTAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp GAGTTCCTCAGTGCACTGGCATCTGAATCCTGCAGATaGTTAAGGAACTGGCCCATGTATGGCTGGAGGTCA +
Preference number: 3 (lower is better)
Translates to: EFLSALASESCR*LRNWPMYGWRS
Trigger: TGACCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR GCA 72 bp AACAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTaGTCGATGACAACGGAGTTCCTCAGTGCACTGGCA +
Preference number: 3 (lower is better)
Translates to: NRLLLLSFIEML*SMTTEFLSALA
Trigger: TGCCAGTGCACTGAGGAACTCCGTTGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTGTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp AAGTCAAACAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTGCTCGATGACACTTGTGGACTTGGCCTaGGCTATCTCTCCGGACCAC +
Preference number: 3 (lower is better)
Translates to: KSNRLLLLSFIEMLCSMTLVDLA*AISPDH
Trigger: GTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAG...TGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTGTTTGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp GCTCCACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTCTAGCAGACACCACCTaGCAGAGACAGGCCCGAAGA +
Preference number: 3 (lower is better)
Translates to: APQGSSPLSSASLSCTHTLADTT*QRQARR
Trigger: TCTTCGGGCCTGTCTCTGCAAGGTGGTGTCTGCTAG...AGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp AGGGATAGGATCTGCCTCCCTGAGGGCATCAGGAAAGAAATCAAGCCTGTTACAATAGCAGCAGGATGCTaGGCTGGAGATGATGCCCAG +
Preference number: 3 (lower is better)
Translates to: RDRICLPEGIRKEIKPVTIAAGC*AGDDAQ
Trigger: CTGGGCATCATCTCCAGCCAAGCATCCTGCTGCTAT...TGTAACAGGCTTGATTTCTTTCCTGATGCCCTCAGGGAGGCAGATCCTATCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGACTCTCTCTCTCTGTCTaGTGCTTTTGTGCTTATGGA +
Preference number: 3 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGLSLSV*CFCAYG
Trigger: TCCATAAGCACAAAAGCACAAGACAGAGAGAGAGAG...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp AACAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTGCTCGATGACAACGGAGTGTCTCCTAAAGGACTaGTGGACTTGGCCTTGGCTA +
Preference number: 3 (lower is better)
Translates to: NRLLLLSFIEMLCSMTTECLLKD*WTWPWL
Trigger: TAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACA...CTCCGTTGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR TCA 72 bp GAAACAAGGCACTGGGACAATCTCCCATACCACCCATaGCACAGAGGTTTGGAGGATGACCTAGCCTCACAA +
Preference number: 3 (lower is better)
Translates to: ETRHWDNLPYHP*HRGLEDDLASQ
Trigger: TTGTGAGGCTAGGTCATCCTCCAAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR TCA 72 bp ACTGGCTCGATGTCCTTTTTCATCTCCGAGGCACTCTaGTGTACTGGGACAGGCTCCATGGTTAGGTGTGAA +
Preference number: 3 (lower is better)
Translates to: TGSMSFFISEAL*CTGTGSMVRCE
Trigger: TTCACACCTAACCATGGAGCCTGTCCCAGTACATCAGAGTGCCTCGGAGATGAAAAAGGACATCGAGCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
3UTR CCA 72 bp CGAAACCTGCAATGTGACCTGAGGAGTCTGACATATTaGCACTCTGCATGGTTCACCAGCAGCTGTTGGAAC +
Preference number: 3 (lower is better)
Translates to: RNLQCDLRSLTY*HSAWFTSSCWN
Trigger: GTTCCAACAGCTGCTGGTGAACCATGCAGAGTGCCAATATGTCAGACTCCTCAGGTCACATTGCAGGTTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp TGCAAGTTTATCATGCACCCATACTCAGGAACGCCATaGACCAGGGTGCTGAGGAAGGTTTTTGCTTGGTCC +
Preference number: 3 (lower is better)
Translates to: CKFIMHPYSGTP*TRVLRKVFAWS
Trigger: GGACCAAGCAAAAACCTTCCTCAGCACCCTGGTCCATGGCGTTCCTGAGTATGGGTGCATGATAAACTTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp TTGTTCCGCATGGTCTTCCCAGCTTTGAAGACACTCTaGAAGGTGAGGCTCGTCTTAATTGAGGTCTGGGCA +
Preference number: 3 (lower is better)
Translates to: LFRMVFPALKTL*KVRLVLIEVWA
Trigger: TGCCCAGACCTCAATTAAGACGAGCCTCACCTTCCAGAGTGTCTTCAAAGCTGGGAAGACCATGCGGAACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp GTTCATCTAGCGGAAGGAGACAGGGTTAGTCCAAAATaGTCTGAAAGTCTGTGCTTAGGGCTGGGTCAGCTG +
Preference number: 3 (lower is better)
Translates to: VHLAEGDRVSPK*SESLCLGLGQL
Trigger: CAGCTGACCCAGCCCTAAGCACAGACTTTCAGACCATTTTGGACTAACCCTGTCTCCTTCCGCTAGATGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR GCA 72 bp CCTAACACGCTGGTCAAAGGGAAGCTGAATCACACATaGATGGAACCTGTAGGCCTGAAGCAGGAAGATCTT +
Preference number: 3 (lower is better)
Translates to: PNTLVKGKLNHT*MEPVGLKQEDL
Trigger: AAGATCTTCCTGCTTCAGGCCTACAGGTTCCATGCATGTGTGATTCAGCTTCCCTTTGACCAGCGTGTTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR TCA 72 bp ACCAGGGTGCTGAGGAAGGTTTTTGCTTGGTCCAAGTaGGGCGTCACCAACAGAAAGTCATCAACAAAACGT +
Preference number: 3 (lower is better)
Translates to: TRVLRKVFAWSK*GVTNRKSSTKR
Trigger: ACGTTTTGTTGATGACTTTCTGTTGGTGACGCCTCACTTGGACCAAGCAAAAACCTTCCTCAGCACCCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp AACTTCTTTAAGTTCTTAAAGAAGCGGCGCTCATTGTaGCTGGTACCCCAGAGACTAGCAGACACCACCTTG +
Preference number: 3 (lower is better)
Translates to: NFFKFLKKRRSL*LVPQRLADTTL
Trigger: CAAGGTGGTGTCTGCTAGTCTCTGGGGTACCAGGCACAATGAGCGCCGCTTCTTTAAGAACTTAAAGAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR GCA 72 bp AAGTCATCAACAAAACGTAAAAGCAACCCATCCCGCTaGACCTCAGCAAACAGCTTGTTCTCCATGTCTCCG +
Preference number: 3 (lower is better)
Translates to: KSSTKRKSNPSR*TSANSLFSMSP
Trigger: CGGAGACATGGAGAACAAGCTGTTTGCTGAGGTGCAGCGGGATGGGTTGCTTTTACGTTTTGTTGATGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR GCA 72 bp TGGATTCTTGACCTTCAGGATAGCATAGCAGCAGGATaGTTGGCTGGAGATGATGCCCAGAAAGAATGTGAG +
Preference number: 3 (lower is better)
Translates to: WILDLQDSIAAG*LAGDDAQKECE
Trigger: CTCACATTCTTTCTGGGCATCATCTCCAGCCAAGCATCCTGCTGCTATGCTATCCTGAAGGTCAAGAATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp CTTGGTCCAAGTGAGGCGTCACCAACAGAAAGTCATCAACAAAACGTAAAAGCAGGCATCTGTCACCTGTaGGTTTGCTGTTCGAAACCT +
Preference number: 3 (lower is better)
Translates to: LGPSEASPTESHQQNVKAGICHL*VCCSKP
Trigger: AGGTTTCGAACAGCAAACCAACAGGTGACAGATGCC...TGCTTTTACGTTTTGTTGATGACTTTCTGTTGGTGACGCCTCACTTGGACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR TCA 72 bp ACCTGTAGGCCTGAAGCAGGAAGATCTTGTATATATTaGTGCAGACTGTCTGGAGGCTGTTCACCTGCAAGT +
Preference number: 3 (lower is better)
Translates to: TCRPEAGRSCIY*CRLSGGCSPAS
Trigger: ACTTGCAGGTGAACAGCCTCCAGACAGTCTGCATCAATATATACAAGATCTTCCTGCTTCAGGCCTACAGGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR-3UTR CAA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCAGTTCACCAGCAGCTGTaGGAACAGGGGCCGCATCTG +
Preference number: 3 (lower is better)
Translates to: FPVQYKYASPYFIFIVISVHQQL*EQGPHL
Trigger: CAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAAC...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
3UTR TCA 72 bp GTTCTTCTGGAATGTGCTCTCTGTGATGTAAAAGAATaGCCTAAGCAGCTGTACCACGTATGTGTCCATCAG +
Preference number: 3 (lower is better)
Translates to: VLLECALCDVKE*PKQLYHVCVHQ
Trigger: CTGATGGACACATACGTGGTACAGCTGCTTAGGTCATTCTTTTACATCACAGAGAGCACATTCCAGAAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR CCA 72 bp AGCAGGAAGATCTTGTATATATTGATGCAGACTGTCTaGAGGCTGTTCACCTGCAAGTCTAGAAATAGACCG +
Preference number: 3 (lower is better)
Translates to: SRKILYILMQTV*RLFTCKSRNRP
Trigger: CGGTCTATTTCTAGACTTGCAGGTGAACAGCCTCCAGACAGTCTGCATCAATATATACAAGATCTTCCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
3UTR TCA 72 bp TCATCACCCTTCACCTTTCTTAGTTATTTGTTAGACTaGCTGACTGACTCTCTCTCTCTCTCTCTCTCTCTC +
Preference number: 3 (lower is better)
Translates to: SSPFTFLSYLLD*LTDSLSLSLSL
Trigger: GAGAGAGAGAGAGAGAGAGAGAGAGTCAGTCAGTCAGTCTAACAAATAACTAAGAAAGGTGAAGGGTGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp CAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCGTTGCACAAGCCGCCTaGCCTCGGGCCCCAGGCGCC +
Preference number: 4 (lower is better)
Translates to: QESHTCPLSQCPCALGALVAQAA*PRAPGA
Trigger: GGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAAC...GAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp CTCCAAAGTCTGAGTGTCCAGCAGCAAGCCACACCAGGGAAACAGGCAGTGAGCGTTGCACAAGCCGCCTaGCCTCGGGCCCCAGGCGCC +
Preference number: 4 (lower is better)
Translates to: LQSLSVQQQATPGKQAVSVAQAA*PRAPGA
Trigger: GGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAAC...GCTCACTGCCTGTTTCCCTGGTGTGGCTTGCTGCTGGACACTCAGACTTTGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR TCA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCGGCGGAGCAAATCCATaGGGTGCGGTGGGCTGGTGT +
Preference number: 4 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCGGANP*GAVGWC
Trigger: ACACCAGCCCACCGCACCTCATGGATTTGCTCCGCC...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp CAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCGGGGTTGGTAGCACCTaGCTGTGGGGTCCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QESHTCPLSQCPCALGALGVGST*LWGPSS
Trigger: GGAGGAGGGACCCCACAGGCAGGTGCTACCAACCCC...GAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp CCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGCGCTGGGTGAAATGCTaGGCCTGCTTCCTTCTGCCC +
Preference number: 4 (lower is better)
Translates to: PGPRNLTPVHCPSAHVHWRWVKC*ACFLLP
Trigger: GGGCAGAAGGAAGCAGGCCCAGCATTTCACCCAGCG...CCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTGGTAGCACCTGCCTGTaGGGTCCCTCCTCCACTCTC +
Preference number: 4 (lower is better)
Translates to: GISHLSTVPVPMCTGCTPGSTCL*GPSSTL
Trigger: GAGAGTGGAGGAGGGACCCCACAGGCAGGTGCTACC...AGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp CCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGAGGGATGACACCTGGTaGAAGGAAAGGTCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: PGPRNLTPVHCPSAHVHWRDDTW*KERSAG
Trigger: ACCTGCCGACCTTTCCTTCCACCAGGTGTCATCCCT...CCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR TCA 90 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTAATGAGCAGCCAGCTTaGGCAGGAAGGCCTGGTAGC +
Preference number: 4 (lower is better)
Translates to: GISHLSTVPVPMCTGCTPNEQPA*AGRPGS
Trigger: GCTACCAGGCCTTCCTGCTCAAGCTGGCTGCTCATT...AGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCAGACGCTGGGTGAAATaGTGGGCCTGCTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCRRWVK*WACFLL
Trigger: CAGAAGGAAGCAGGCCCAGCATTTCACCCAGCGTCT...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp TCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGAACTGGCCCATGTATaGCTGGAGGTCAGAGAGGGT +
Preference number: 4 (lower is better)
Translates to: SRAQESHTCPLSQCPCALELAHV*LEVREG
Trigger: ACCCTCTCTGACCTCCAGCCATACATGGGCCAGTTC...CAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTCGGCACAGCAGTTTTTaGGCTGTCCTCAGAGGTCCC +
Preference number: 4 (lower is better)
Translates to: GISHLSTVPVPMCTGCTPRHSSF*AVLRGP
Trigger: GGGACCTCTGAGGACAGCCCAAAAACTGCTGTGCCG...AGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGGTCATTGTCGCCTCTaGGAGCTTCCGGCACAGCAG +
Preference number: 4 (lower is better)
Translates to: EKTPGPRNLTPVHCPSAHGHCRL*ELPAQQ
Trigger: CTGCTGTGCCGGAAGCTCCCAGAGGCGACAATGACC...ATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp TGTCACCAATCTTTACGACACTGTGACGCAGGAAGTGCAGGAAGAAGTCAAACAGTTGCACAAGCCGCCTaGCCTCGGGCCCCAGGCGCC +
Preference number: 4 (lower is better)
Translates to: CHQSLRHCDAGSAGRSQTVAQAA*PRAPGA
Trigger: GGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAAC...TGTTTGACTTCTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAGATTGGTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCGTGAAATGCTGGGCCTaGTTCCTTCTGCCCAAAGCT +
Preference number: 4 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCVKCWA*FLLPKA
Trigger: AGCTTTGGGCAGAAGGAAGCAGGCCCAGCATTTCAC...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp CAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTCCGAAACACAGACTaGAGAGCAGGGTGGATAGGC +
Preference number: 4 (lower is better)
Translates to: QESHTCPLSQCPCALGALLRNTD*RAGWIG
Trigger: GCCTATCCACCCTGCTCTGCAGTCTGTGTTTCGGAG...GAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp CCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGCTGAGGAAGGTTTTTaGTTGGTCCAAGTGAGGCGT +
Preference number: 4 (lower is better)
Translates to: PGPRNLTPVHCPSAHVHWAEEGF*LVQVRR
Trigger: ACGCCTCACTTGGACCAAGCAAAAACCTTCCTCAGC...CCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCTGGTCTGAAAGTCTGTaGTTAGGGCTGGGTCAGCTG +
Preference number: 4 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCWSESL*LGLGQL
Trigger: CAGCTGACCCAGCCCTAAGCACAGACTTTCAGACCA...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp ATGCTCTGCTCGATGACAACGGAGTTCCTCAGTGCACTGGCATCTGAATCCTGCCAGGGACAGGGGTCCTaGTGGCTCTGTCCTTGGTGC +
Preference number: 4 (lower is better)
Translates to: MLCSMTTEFLSALASESCQGQGS*WLCPWC
Trigger: GCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTG...GCAGGATTCAGATGCCAGTGCACTGAGGAACTCCGTTGTCATCGAGCAGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CCA 90 bp GTGAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCCCTGGTAGGCACAGCTaGGGGGCACCAGAAGATAAA +
Preference number: 4 (lower is better)
Translates to: VKRLQGPGISHLSTVPVPPGRHS*GAPEDK
Trigger: TTTATCTTCTGGTGCCCCCCAGCTGTGCCTACCAGG...GGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp GAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATTTCACCAGCAGCTGTTaGAACAGGGGCCGCATCTGC +
Preference number: 4 (lower is better)
Translates to: EKTPGPRNLTPVHCPSAHFTSSC*NRGRIC
Trigger: GCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAA...ATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp ATGCTCTGCTCGATGACAACGGAGTTCCTCAGTGCACTGGCATCTGAATCCTGCGGACAGGGGTCCTGCTaGCTCTGTCCTTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: MLCSMTTEFLSALASESCGQGSC*LCPWCL
Trigger: CAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCC...GCAGGATTCAGATGCCAGTGCACTGAGGAACTCCGTTGTCATCGAGCAGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR GCA 90 bp CTGGCCCATGTATGGCTGGAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGAGCACGTTTCTCTCGTTaGGCTCGCAGAGTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LAHVWLEVREGGDLSPKGARFSR*ARRVSA
Trigger: TGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGC...TCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTCCAGCCATACATGGGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGATACATCCTGGGTGTCTaGTCCAGAGCACGCACACGC +
Preference number: 4 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGYILGV*SRARTR
Trigger: GCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTA...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGATGGCCCATGTATGGCTaGAGGTCAGAGAGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGWPMYG*RSERVV
Trigger: CACCACCCTCTCTGACCTCCAGCCATACATGGGCCA...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTTGGCTATCTCTCCGGACCTCTGTCCTTGGTGCCTaGGTTCCAACCTGCCCACAG +
Preference number: 4 (lower is better)
Translates to: VTCLLKDLWTWPWLSLRTSVLGA*VPTCPQ
Trigger: CTGTGGGCAGGTTGGAACCCAGGCACCAAGGACAGA...GGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CCA 90 bp GGTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTTGGCTATCTCTCCGGACTGCTGGCTCTGTCCTTaGTGCCTGGGTTCCAACCTG +
Preference number: 4 (lower is better)
Translates to: GDLSPKGLVDLALAISPDCWLCP*CLGSNL
Trigger: CAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCA...GTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
3UTR CAA 72 bp GACATATTGGCACTCTGCATGGTTCACCAGCAGCTGTaGGAACAGGGGCCGCATCTGCCAGTATCGACGCGA +
Preference number: 4 (lower is better)
Translates to: DILALCMVHQQL*EQGPHLPVSTR
Trigger: TCGCGTCGATACTGGCAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAACCATGCAGAGTGCCAATATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGAGCACGTTTCTCTCGTTaGGCTCGCAGAGTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGARFSR*ARRVSA
Trigger: TGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGC...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp CAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCAGAAAACCATATACCTaGCAGGGACTGCTGTGCAGG +
Preference number: 4 (lower is better)
Translates to: QESHTCPLSQCPCALGALRKPYT*QGLLCR
Trigger: CCTGCACAGCAGTCCCTGGCAGGTATATGGTTTTCT...GAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTCAATGCTCTGCAGCTTaGTCCACACACTCTTACGGT +
Preference number: 4 (lower is better)
Translates to: GISHLSTVPVPMCTGCTPQCSAA*STHSYG
Trigger: ACCGTAAGAGTGTGTGGAGCAAGCTGCAGAGCATTG...AGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GCCCATGTATGGCTGGAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTAGGGATGACACCTGGTaGAAGGAAAGGTCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: AHVWLEVREGGDLSPKGLRDDTW*KERSAG
Trigger: ACCTGCCGACCTTTCCTTCCACCAGGTGTCATCCCT...AAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTCCAGCCATACATGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp GAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATTTCAGGGATGACACCTaGTGGAAGGAAAGGTCGGCA +
Preference number: 4 (lower is better)
Translates to: EKTPGPRNLTPVHCPSAHFRDDT*WKERSA
Trigger: TGCCGACCTTTCCTTCCACCAGGTGTCATCCCTGAA...ATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp TCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGCATCTGTCACCTGTTaGTTTGCTGTTCGAAACCTG +
Preference number: 4 (lower is better)
Translates to: SRAQESHTCPLSQCPCALASVTC*FAVRNL
Trigger: CAGGTTTCGAACAGCAAACCAACAGGTGACAGATGC...CAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp CCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGAAGAGCCTGTTCTTCTaGAATGTGCTCTCTGTGATG +
Preference number: 4 (lower is better)
Translates to: PGPRNLTPVHCPSAHVHWKSLFF*NVLSVM
Trigger: CATCACAGAGAGCACATTCCAGAAGAACAGGCTCTT...CCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp TCTGATGTACTGGGACAGGCTCCATGGTTAGGTGTGAAAAGACTCCAGGGCCCAGTCTGCAGATGGGCATaGCTAGCCAGGTGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: SDVLGQAPWLGVKRLQGPVCRWA*LARCPG
Trigger: ACCAGGACACCTGGCTAGCCATGCCCATCTGCAGAC...TGGGCCCTGGAGTCTTTTCACACCTAACCATGGAGCCTGTCCCAGTACATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
3UTR CAA 72 bp GAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTaGGCCTTGGCTATCTCTCCGGACCACTGCATACTG +
Preference number: 4 (lower is better)
Translates to: EGGDLSPKGLVD*ALAISPDHCIL
Trigger: CAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
3UTR CAA 72 bp AGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTaGTGGACTTGGCCTTGGCTATCTCTCCGGACCACT +
Preference number: 4 (lower is better)
Translates to: RSERVVTCLLKD*WTWPWLSLRTT
Trigger: AGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000221522.2
ENSMUST00000222251.2
ENSMUST00000223303.2
CDS-3UTR TCA 90 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTGGAGACATTTGTAGATaGCAGAATGAGCAGCCAGCT +
Preference number: 4 (lower is better)
Translates to: GISHLSTVPVPMCTGCTPGDICR*QNEQPA
Trigger: AGCTGGCTGCTCATTCTGTCATCTACAAATGTCTCC...AGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCCCTTCCCCGGGCTGCTaGGGAGCCAGTGGCAATCCT +
Preference number: 4 (lower is better)
Translates to: ERNQACYRKQGTGTISHTPSPGC*GASGNP
Trigger: AGGATTGCCACTGGCTCCGCAGCAGCCCGGGGAAGG...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GTGAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCTGGAGGCTGTTCACCTaGAAGTCTAGAAATAGACCG +
Preference number: 4 (lower is better)
Translates to: VKRLQGPGISHLSTVPVPWRLFT*KSRNRP
Trigger: CGGTCTATTTCTAGACTTGCAGGTGAACAGCCTCCA...GGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp CAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCAAGCTGAATCACACATaGATGGAACCTGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: QESHTCPLSQCPCALGALKLNHT*MEPVGL
Trigger: CAGGCCTACAGGTTCCATGCATGTGTGATTCAGCTT...GAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTTGGCTATCTCTCCGGACCTTCAGGGATGACACCTaGTGGAAGGAAAGGTCGGCA +
Preference number: 4 (lower is better)
Translates to: VTCLLKDLWTWPWLSLRTFRDDT*WKERSA
Trigger: TGCCGACCTTTCCTTCCACCAGGTGTCATCCCTGAA...GGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp ACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTAGCAGGCAGCTGGTATaGAGCTGCACCACCCAGGGT +
Preference number: 4 (lower is better)
Translates to: TGNKALGQSPIPPMTQRFSRQLV*SCTTQG
Trigger: ACCCTGGGTGGTGCAGCTCCATACCAGCTGCCTGCT...AAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
3UTR CAA 72 bp TTGTGCCTGGTACCCCAGAGACTAGCAGACACCACCTaGCAGAGACAGGCCCGAAGAAAACCATATACCTGC +
Preference number: 4 (lower is better)
Translates to: LCLVPQRLADTT*QRQARRKPYTC
Trigger: GCAGGTATATGGTTTTCTTCGGGCCTGTCTCTGCAAGGTGGTGTCTGCTAGTCTCTGGGGTACCAGGCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp TCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCTTGGCTAGCCTGGGTTCCAACCTaGCCACAGCAAACCTTAACA +
Preference number: 4 (lower is better)
Translates to: SERVVTCLLKDLWTWPWLAWVPT*PQQTLT
Trigger: TGTTAAGGTTTGCTGTGGGCAGGTTGGAACCCAGGC...TAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CCA 90 bp TTAACAAAGTACATCCTGGGTGTCTGGTCCAGAGCACGCACACGCAGCACAAAGCCTGGTAGGCACAGCTaGGGGGCACCAGAAGATAAA +
Preference number: 4 (lower is better)
Translates to: LTKYILGVWSRARTRSTKPGRHS*GAPEDK
Trigger: TTTATCTTCTGGTGCCCCCCAGCTGTGCCTACCAGG...CTTTGTGCTGCGTGTGCGTGCTCTGGACCAGACACCCAGGATGTACTTTGTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp TGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGAGCGCAGTCTGCAGATaGGCATGGCTAGCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: CYRKQGTGTISHTTHDTESAVCR*AWLARC
Trigger: ACACCTGGCTAGCCATGCCCATCTGCAGACTGCGCT...CTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCGACTGCAGAGCAGGGTaGATAGGCTGGAGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: ERNQACYRKQGTGTISHTDCRAG*IGWSPG
Trigger: CCCAGGGCTCCAGCCTATCCACCCTGCTCTGCAGTC...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp CAGGCTGCTGCTGCTCTCATTCATAGAGATGCTCTGCTCGATGACAACGGAGTTACCATTAAGCATGGCTaGATCCAGGGACAGGGGTCC +
Preference number: 4 (lower is better)
Translates to: QAAAALIHRDALLDDNGVTIKHG*IQGQGS
Trigger: GGACCCCTGTCCCTGGATCCAGCCATGCTTAATGGT...AACTCCGTTGTCATCGAGCAGAGCATCTCTATGAATGAGAGCAGCAGCAGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR TCA 90 bp GGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTGGACAGCTCTTTCAGGGATaGCACCTGGTGGAAGGAAAG +
Preference number: 4 (lower is better)
Translates to: GNKALGQSPIPPMTQRFGQLFQG*HLVEGK
Trigger: CTTTCCTTCCACCAGGTGTCATCCCTGAAAGAGCTG...TCCAAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR TCA 90 bp TCTGATGTACTGGGACAGGCTCCATGGTTAGGTGTGAAAAGACTCCAGGGCCCATCTGGCCTTCTTAGCTaGAGGCACACTTGTACTGGT +
Preference number: 4 (lower is better)
Translates to: SDVLGQAPWLGVKRLQGPSGLLS*RHTCTG
Trigger: ACCAGTACAAGTGTGCCTTCAGCTAAGAAGGCCAGA...TGGGCCCTGGAGTCTTTTCACACCTAACCATGGAGCCTGTCCCAGTACATCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGAGCAAATCCATGAGGTaGGGTGGGCTGGTGTTCAAG +
Preference number: 4 (lower is better)
Translates to: VTGNKALGQSPIPPMTQRSKSMR*GGLVFK
Trigger: CTTGAACACCAGCCCACCGCACCTCATGGATTTGCT...CCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTGGACTGACTCCAATGCTCTaGAGCTTGCTCCACACACTC +
Preference number: 4 (lower is better)
Translates to: GNKALGQSPIPPMTQRFGLTPML*SLLHTL
Trigger: GAGTGTGTGGAGCAAGCTGCAGAGCATTGGAGTCAG...TCCAAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp GTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGGTAGCAGAGCCAATGTaGGGCTTCAGGAGGAAAGGA +
Preference number: 4 (lower is better)
Translates to: VTGNKALGQSPIPPMTQRVAEPM*GFRRKG
Trigger: TCCTTTCCTCCTGAAGCCGCACATTGGCTCTGCTAC...CCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp AGGGATAGGATCTGCCTCCCTGAGGGCATCAGGAAAGAAATCAAGCCTGTTACAAGGGATGACACCTGGTaGAAGGAAAGGTCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: RDRICLPEGIRKEIKPVTRDDTW*KERSAG
Trigger: ACCTGCCGACCTTTCCTTCCACCAGGTGTCATCCCT...TGTAACAGGCTTGATTTCTTTCCTGATGCCCTCAGGGAGGCAGATCCTATCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp ACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTATCCATGAGGTGCGGTaGGCTGGTGTTCAAGGCATC +
Preference number: 4 (lower is better)
Translates to: TGNKALGQSPIPPMTQRFIHEVR*AGVQGI
Trigger: GATGCCTTGAACACCAGCCCACCGCACCTCATGGAT...AAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR TCA 90 bp ACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTCAGCTCTTTCAGGGATaGCACCTGGTGGAAGGAAAG +
Preference number: 4 (lower is better)
Translates to: TGNKALGQSPIPPMTQRFQLFQG*HLVEGK
Trigger: CTTTCCTTCCACCAGGTGTCATCCCTGAAAGAGCTG...AAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR TCA 90 bp ACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTTTGAGCCCAGAAAGATaGTCTCCACCAGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: TGNKALGQSPIPPMTQRFLSPER*SPPVSW
Trigger: CCAGGAGACTGGTGGAGATCATCTTTCTGGGCTCAA...AAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR TCA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCAGCCAGGTGTCCTGGTaGTGCCTGACCTCCTCTTGT +
Preference number: 4 (lower is better)
Translates to: ERNQACYRKQGTGTISHTSQVSW*CLTSSC
Trigger: ACAAGAGGAGGTCAGGCATCACCAGGACACCTGGCT...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GCTCCACAGGGAAGTTCACCACTGTCTTCTGCAAGTTTATCATGCACCCATACTCCTGGTAGGCACAGCTaGGGGGCACCAGAAGATAAA +
Preference number: 4 (lower is better)
Translates to: APQGSSPLSSASLSCTHTPGRHS*GAPEDK
Trigger: TTTATCTTCTGGTGCCCCCCAGCTGTGCCTACCAGG...AGTATGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAACTTCCCTGTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp GGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTGGAAGATGCTTAAGGAACTaGCCCATGTATGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: GNKALGQSPIPPMTQRFGRCLRN*PMYGWR
Trigger: CCTCCAGCCATACATGGGCCAGTTCCTTAAGCATCT...TCCAAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp TCTGATGTACTGGGACAGGCTCCATGGTTAGGTGTGAAAAGACTCCAGGGCCCATTCCACATCAGTTCCTaGAGTGATAGCTTGCCGTAT +
Preference number: 4 (lower is better)
Translates to: SDVLGQAPWLGVKRLQGPFHISS*SDSLPY
Trigger: ATACGGCAAGCTATCACTGCAGGAACTGATGTGGAA...TGGGCCCTGGAGTCTTTTCACACCTAACCATGGAGCCTGTCCCAGTACATCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTGGACTCCTAAAGGACTTGTaGACTTGGCCTTGGCTATCT +
Preference number: 4 (lower is better)
Translates to: GNKALGQSPIPPMTQRFGLLKDL*TWPWLS
Trigger: AGATAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAG...TCCAAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGGATAGGCTGGAGCCCTaGGGGATGCCCTGGCACTGC +
Preference number: 4 (lower is better)
Translates to: AFISWLGVLLHSSREVAKDRLEP*GMPWHC
Trigger: GCAGTGCCAGGGCATCCCCCAGGGCTCCAGCCTATC...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp TGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGTTGATGCAGACTGTCTaGAGGCTGTTCACCTGCAAG +
Preference number: 4 (lower is better)
Translates to: CYRKQGTGTISHTTHDTELMQTV*RLFTCK
Trigger: CTTGCAGGTGAACAGCCTCCAGACAGTCTGCATCAA...CTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
3UTR CAA 72 bp ATGAACTTCTTTAAGTTCTTAAAGAAGCGGCGCTCATaGTGCCTGGTACCCCAGAGACTAGCAGACACCACC +
Preference number: 4 (lower is better)
Translates to: MNFFKFLKKRRS*CLVPQRLADTT
Trigger: GGTGGTGTCTGCTAGTCTCTGGGGTACCAGGCACAATGAGCGCCGCTTCTTTAAGAACTTAAAGAAGTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
CDS-3UTR TCA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCATCTTTACGACACTGTaGCGCAGGAAGTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: ERNQACYRKQGTGTISHTIFTTL*RRKCRK
Trigger: CTTCCTGCACTTCCTGCGTCACAGTGTCGTAAAGAT...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR TCA 90 bp GTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGAGATCTTGTATATATTaGTGCAGACTGTCTGGAGGC +
Preference number: 4 (lower is better)
Translates to: VTGNKALGQSPIPPMTQRRSCIY*CRLSGG
Trigger: GCCTCCAGACAGTCTGCATCAATATATACAAGATCT...CCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp TTGTGCTTTTGTGCTTATGGATCAAGATGTAAACTCTCAGCTGCTGCTCCAGTAAACTCATGTTCACAATaGGCCGCAGGCCGTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LCFCAYGSRCKLSAAAPVNSCSQ*AAGRWA
Trigger: AGCCCAACGGCCTGCGGCCCATTGTGAACATGAGTT...TACTGGAGCAGCAGCTGAGAGTTTACATCTTGATCCATAAGCACAAAAGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp ACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTTTCTGCCCAAAGCTCTaGTACCCATGCTATAACTCA +
Preference number: 4 (lower is better)
Translates to: TGNKALGQSPIPPMTQRFFCPKL*YPCYNS
Trigger: TGAGTTATAGCATGGGTACCAGAGCTTTGGGCAGAA...AAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR TCA 90 bp ATGGAACCTGTAGGCCTGAAGCAGGAAGATCTTGTATATATTGATGCAGACTGTCAGCTCTTTCAGGGATaGCACCTGGTGGAAGGAAAG +
Preference number: 4 (lower is better)
Translates to: MEPVGLKQEDLVYIDADCQLFQG*HLVEGK
Trigger: CTTTCCTTCCACCAGGTGTCATCCCTGAAAGAGCTG...ACAGTCTGCATCAATATATACAAGATCTTCCTGCTTCAGGCCTACAGGTTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR GCA 90 bp TTGTGCTTTTGTGCTTATGGATCAAGATGTAAACTCTCAGCTGCTGCTCCAGTAAGACAAATCTTTCTCTaGAGTAGGCACCTCGGGGGA +
Preference number: 4 (lower is better)
Translates to: LCFCAYGSRCKLSAAAPVRQIFL*SRHLGG
Trigger: TCCCCCGAGGTGCCTACTGCAGAGAAAGATTTGTCT...TACTGGAGCAGCAGCTGAGAGTTTACATCTTGATCCATAAGCACAAAAGCACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp TTGTGCTTTTGTGCTTATGGATCAAGATGTAAACTCTCAGCTGCTGCTCCAGTAGCCAGATATCCGTGGTaGCACAAATTTGGTACAGGG +
Preference number: 4 (lower is better)
Translates to: LCFCAYGSRCKLSAAAPVARYPW*HKFGTG
Trigger: CCCTGTACCAAATTTGTGCCACCACGGATATCTGGC...TACTGGAGCAGCAGCTGAGAGTTTACATCTTGATCCATAAGCACAAAAGCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp TTGTGCTTTTGTGCTTATGGATCAAGATGTAAACTCTCAGCTGCTGCTCCAGTACTTGGCCATCTCCCCTaGAGTAAAGGAAATGTCTGG +
Preference number: 4 (lower is better)
Translates to: LCFCAYGSRCKLSAAAPVLGHLP*SKGNVW
Trigger: CCAGACATTTCCTTTACTCCAGGGGAGATGGCCAAG...TACTGGAGCAGCAGCTGAGAGTTTACATCTTGATCCATAAGCACAAAAGCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGAGAGTCTTGAGACGCTaGGTGAAATGCTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: AFISWLGVLLHSSREVAKRVLRR*VKCWAC
Trigger: GCAGGCCCAGCATTTCACCCAGCGTCTCAAGACTCT...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR TCA 90 bp TTCCCCCTATTTTATCTTTATAGTGATCTCAGTAGGTACCCACTATGGTTACTGGGTCTGGGCATAACCTaGGTAGTCACAGAACACCTC +
Preference number: 4 (lower is better)
Translates to: FPLFYLYSDLSRYPLWLLGLGIT*VVTEHL
Trigger: GAGGTGTTCTGTGACTACTCAGGTTATGCCCAGACC...CAGTAACCATAGTGGGTACCTACTGAGATCACTATAAAGATAAAATAGGGGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTGTCTTGTGCTTTTGTGCTTATGGATCAAGATGTAAACTCTGCAGAGATGTGGAGCTaGGCTTGTGTTTACAGCACA +
Preference number: 4 (lower is better)
Translates to: LSLSLSCAFVLMDQDVNSAEMWS*ACVYST
Trigger: TGTGCTGTAAACACAAGCCCAGCTCCACATCTCTGC...AGAGTTTACATCTTGATCCATAAGCACAAAAGCACAAGACAGAGAGAGAGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGTTGTGGACTTGGCCTTaGCTATCTCTCCGGACCACT +
Preference number: 4 (lower is better)
Translates to: AFISWLGVLLHSSREVAKLWTWP*LSLRTT
Trigger: AGTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAA...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCAATACCTGCCAGGGACTaGTGTGCAGGCGGAGCAAAT +
Preference number: 4 (lower is better)
Translates to: FPVQYKYASPYFIFIVISIPARD*CAGGAN
Trigger: ATTTGCTCCGCCTGCACAGCAGTCCCTGGCAGGTAT...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
3UTR CAA 72 bp ACTTTCATCTTCCACATCAGTTCCTGCAGTGATAGCTaGCCGTATTTCCCCAACGAGATGAACTTCTTTAAG +
Preference number: 4 (lower is better)
Translates to: TFIFHISSCSDS*PYFPNEMNFFK
Trigger: CTTAAAGAAGTTCATCTCGTTGGGGAAATACGGCAAGCTATCACTGCAGGAACTGATGTGGAAGATGAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223303.2
CDS-3UTR CCA 90 bp TATGGATCAAGATGTAAACTCTCAGCTGCTGCTCCAGTAGGAAAATCCTGCTTTTCTGGTCTCAATAAATaGCCTGAGCTGAAAGGCATT +
Preference number: 4 (lower is better)
Translates to: YGSRCKLSAAAPVGKSCFSGLNK*PELKGI
Trigger: AATGCCTTTCAGCTCAGGCCATTTATTGAGACCAGA...AAAGCAGGATTTTCCTACTGGAGCAGCAGCTGAGAGTTTACATCTTGATCCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CCA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGAGTTCCTCAGTGCACTaGCATCTGAATCCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: AFISWLGVLLHSSREVAKSSSVH*HLNPAD
Trigger: ATCTGCAGGATTCAGATGCCAGTGCACTGAGGAACT...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCATCTGCAAGTTTATCATaGACCCATACTCAGGAACGC +
Preference number: 4 (lower is better)
Translates to: FPVQYKYASPYFIFIVISSASLS*THTQER
Trigger: GCGTTCCTGAGTATGGGTGCATGATAAACTTGCAGA...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR GCA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCATTCACCACTGTCTTCTaGAAGTTTATCATGCACCCA +
Preference number: 4 (lower is better)
Translates to: FPVQYKYASPYFIFIVISFTTVF*KFIMHP
Trigger: TGGGTGCATGATAAACTTGCAGAAGACAGTGGTGAA...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS GCA 90 bp TTGCACAAGCCGCCTGCCCTCGGGCCCCAGGCGCCGCACAAAGGTTaGCAGCGGCCACACCTCCCGGTATCGGCTGCGCAGCAGAGAGCG +
Preference number: 5 (lower is better)
Translates to: LHKPPALGPQAPHKG*QRPHLPVSAAQQRA
Trigger: CGCTCTCTGCTGCGCAGCCGATACCGGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS GCA 90 bp CCAAAGTGCGGTAGATCTTCGGGTCCCCGGGTTGCACAAGCCGCCTaGCCTCGGGCCCCAGGCGCCGCACAAAGGTTGCCAGCGGCCACA +
Preference number: 5 (lower is better)
Translates to: PKCGRSSGPRVAQAA*PRAPGAAQRLPAAT
Trigger: TGTGGCCGCTGGCAACCTTTGTGCGGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAACCCGGGGACCCGAAGATCTACCGCACTTTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CAA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCGGCGCCGCACAAAGGTaGCCAGCGGCCACACCTCCC +
Preference number: 5 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCGAAQR*PAATPP
Trigger: GGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCC...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022104.9
ENSMUST00000223303.2
CDS-3UTR CAA 90 bp TTGGCCTTGGCTATCTCTCCGGACCACTGCATACTGGCGGATACAGTACGTGCTGGCGCCGCACAAAGGTaGCCAGCGGCCACACCTCCC +
Preference number: 5 (lower is better)
Translates to: LALAISPDHCILADTVRAGAAQR*PAATPP
Trigger: GGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCC...AGCACGTACTGTATCCGCCAGTATGCAGTGGTCCGGAGAGATAGCCAAGGCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CAA 90 bp GACCTTCAGGATAGCATAGCAGCAGGATGCTTGGCTGGAGATGATGCCCAGAAAGGCGCCGCACAAAGGTaGCCAGCGGCCACACCTCCC +
Preference number: 5 (lower is better)
Translates to: DLQDSIAAGCLAGDDAQKGAAQR*PAATPP
Trigger: GGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCC...TTTCTGGGCATCATCTCCAGCCAAGCATCCTGCTGCTATGCTATCCTGAAGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS-3UTR CAA 90 bp GGAATCTCACACCTGTCCACTGTCCCAGTGCCCATGTGCACTGGGTGCACTCCTGTTCACCAGCAGCTGTaGGAACAGGGGCCGCATCTG +
Preference number: 5 (lower is better)
Translates to: GISHLSTVPVPMCTGCTPVHQQL*EQGPHL
Trigger: CAGATGCGGCCCCTGTTCCAACAGCTGCTGGTGAAC...AGGAGTGCACCCAGTGCACATGGGCACTGGGACAGTGGACAGGTGTGAGATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGACGCAGGCCGTTGGGCTaGGGGATGAAGCGCAGTCTG +
Preference number: 5 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGRRPLG*GMKRSL
Trigger: CAGACTGCGCTTCATCCCCAAGCCCAACGGCCTGCG...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS GCA 90 bp GGTGGAAGGAAAGGTCGGCAGGTGGAGGCTGTGAGCCCCAGTGCATaGACACTAGGCATTGGGCAACCAAAGTGCGGTAGATCTTCGGGT +
Preference number: 5 (lower is better)
Translates to: GGRKGRQVEAVSPSA*TLGIGQPKCGRSSG
Trigger: ACCCGAAGATCTACCGCACTTTGGTTGCCCAATGCCTAGTGTGCATGCACTGGGGCTCACAGCCTCCACCTGCCGACCTTTCCTTCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CCA 90 bp GTGAGTACCATTAAGCATGGCTGGATCCAGGGACAGGGGTCCTGCTaGCTCTGTCCTTGGTGCCTGGGTTCCAACCTGCCCACAGCAAAC +
Preference number: 5 (lower is better)
Translates to: VSTIKHGWIQGQGSC*LCPWCLGSNLPTAN
Trigger: GTTTGCTGTGGGCAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAGCCATGCTTAATGGTACTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CAA 90 bp CTGGAGGTCAGAGAGGGTGGTGACCTGTCTCCTAAAGGACTTGTGGACTTGGCCCTGCTGGCTCTGTCCTaGGTGCCTGGGTTCCAACCT +
Preference number: 5 (lower is better)
Translates to: LEVREGGDLSPKGLVDLALLALS*VPGFQP
Trigger: AGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAG...GGCCAAGTCCACAAGTCCTTTAGGAGACAGGTCACCACCCTCTCTGACCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS GCA 90 bp AAGCCAAAAGCCAGCACGTTTCTCTCGTTGCGCTCGCAGAGTCTCTaGACAACCCTGGCCACCAGCTCTTTCAGGGATGACACCTGGTGG +
Preference number: 5 (lower is better)
Translates to: KPKASTFLSLRSQSL*TTLATSSFRDDTWW
Trigger: CCACCAGGTGTCATCCCTGAAAGAGCTGGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGCTGGCTTTTGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CCA 90 bp CCAGCACGTTTCTCTCGTTGCGCTCGCAGAGTCTCTGCACAACCCTaGCCACCAGCTCTTTCAGGGATGACACCTGGTGGAAGGAAAGGT +
Preference number: 5 (lower is better)
Translates to: PARFSRCARRVSAQP*PPALSGMTPGGRKG
Trigger: ACCTTTCCTTCCACCAGGTGTCATCCCTGAAAGAGCTGGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CCA 90 bp GCTGGATCCAGGGACAGGGGTCCTGCTGGCTCTGTCCTTGGTGCCTaGGTTCCAACCTGCCCACAGCAAACCTTAACAAAGTACATCCTG +
Preference number: 5 (lower is better)
Translates to: AGSRDRGPAGSVLGA*VPTCPQQTLTKYIL
Trigger: CAGGATGTACTTTGTTAAGGTTTGCTGTGGGCAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CAA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCAAGTTAGGCTGGAGGTaGCTGAGTAGGAATGAGGGG +
Preference number: 5 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCKLGWR*LSRNEG
Trigger: CCCCTCATTCCTACTCAGCAACCTCCAGCCTAACTT...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CCA 90 bp AAGCATGGCTGGATCCAGGGACAGGGGTCCTGCTGGCTCTGTCCTTaGTGCCTGGGTTCCAACCTGCCCACAGCAAACCTTAACAAAGTA +
Preference number: 5 (lower is better)
Translates to: KHGWIQGQGSCWLCP*CLGSNLPTANLNKV
Trigger: TACTTTGTTAAGGTTTGCTGTGGGCAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAGCCATGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CAA 90 bp GAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATCGTGGTGGCACAAATTaGGTACAGGGGAGACCCACA +
Preference number: 5 (lower is better)
Translates to: EKTPGPRNLTPVHCPSAHRGGTN*VQGRPT
Trigger: TGTGGGTCTCCCCTGTACCAAATTTGTGCCACCACG...ATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp GTGCCCATGTGCACTGGGTGCACTCCTCATGTGCTGGTGCTAGTGGATCCCTGCATGGTCTTCCCAGCTTaGAAGACACTCTGGAAGGTG +
Preference number: 5 (lower is better)
Translates to: VPMCTGCTPHVLVLVDPCMVFPA*KTLWKV
Trigger: CACCTTCCAGAGTGTCTTCAAAGCTGGGAAGACCAT...GCAGGGATCCACTAGCACCAGCACATGAGGAGTGCACCCAGTGCACATGGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CCA 90 bp GTCACATCTGCCTGTACGATACATGTGAGTACCATTAAGCATGGCTaGATCCAGGGACAGGGGTCCTGCTGGCTCTGTCCTTGGTGCCTG +
Preference number: 5 (lower is better)
Translates to: VTSACTIHVSTIKHG*IQGQGSCWLCPWCL
Trigger: CAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAGCCATGCTTAATGGTACTCACATGTATCGTACAGGCAGATGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS-3UTR CAA 90 bp GAGGATGACCTAGCCTCACAACTGACCAGTCCCTCTTGTGACGTGGATCCAGGACCAATGCTCTGCAGCTaGCTCCACACACTCTTACGG +
Preference number: 5 (lower is better)
Translates to: EDDLASQLTSPSCDVDPGPMLCS*LHTLLR
Trigger: CCGTAAGAGTGTGTGGAGCAAGCTGCAGAGCATTGG...TCCTGGATCCACGTCACAAGAGGGACTGGTCAGTTGTGAGGCTAGGTCATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CCA 90 bp CACACTTGTACTGGTGAGACTCAGATGCCTCTTTGTACCTCGAGATaGCAAGGCCAGGGGTTTCGGTGCTTCCTGGCGACTACTGCTCTT +
Preference number: 5 (lower is better)
Translates to: HTCTGETQMPLCTSR*QGQGFRCFLATTAL
Trigger: AAGAGCAGTAGTCGCCAGGAAGCACCGAAACCCCTGGCCTTGCCATCTCGAGGTACAAAGAGGCATCTGAGTCTCACCAGTACAAGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp GAAAAGACTCCAGGGCCCAGGAATCTCACACCTGTCCACTGTCCCAGTGCCCATTGTCTCCTAAAGGACTaGTGGACTTGGCCTTGGCTA +
Preference number: 5 (lower is better)
Translates to: EKTPGPRNLTPVHCPSAHCLLKD*WTWPWL
Trigger: TAGCCAAGGCCAAGTCCACAAGTCCTTTAGGAGACA...ATGGGCACTGGGACAGTGGACAGGTGTGAGATTCCTGGGCCCTGGAGTCTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp GAAAGAAATCAAGCCTGTTACAGGAAACAAGGCACTGGGACAATCTCCCATACCCTAGCAGACACCACCTaGCAGAGACAGGCCCGAAGA +
Preference number: 5 (lower is better)
Translates to: ERNQACYRKQGTGTISHTLADTT*QRQARR
Trigger: TCTTCGGGCCTGTCTCTGCAAGGTGGTGTCTGCTAG...GGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGTAACAGGCTTGATTTCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp ACAGGAAACAAGGCACTGGGACAATCTCCCATACCACCCATGACACAGAGGTTTGAGGAGTCTGACATATaGGCACTCTGCATGGTTCAC +
Preference number: 5 (lower is better)
Translates to: TGNKALGQSPIPPMTQRFEESDI*ALCMVH
Trigger: GTGAACCATGCAGAGTGCCAATATGTCAGACTCCTC...AAACCTCTGTGTCATGGGTGGTATGGGAGATTGTCCCAGTGCCTTGTTTCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp TTTCCAGTTCAGTACAAATACGCTTCCCCCTATTTTATCTTTATAGTGATCTCAATGGGCCGCAGGCCGTaGGGCTTGGGGATGAAGCGC +
Preference number: 5 (lower is better)
Translates to: FPVQYKYASPYFIFIVISMGRRP*GLGMKR
Trigger: GCGCTTCATCCCCAAGCCCAACGGCCTGCGGCCCAT...TGAGATCACTATAAAGATAAAATAGGGGGAAGCGTATTTGTACTGAACTGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGCTTGTGGACTTGGCCTaGGCTATCTCTCCGGACCAC +
Preference number: 5 (lower is better)
Translates to: AFISWLGVLLHSSREVAKLVDLA*AISPDH
Trigger: GTGGTCCGGAGAGATAGCCAAGGCCAAGTCCACAAG...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp TTGTGCTTTTGTGCTTATGGATCAAGATGTAAACTCTCAGCTGCTGCTCCAGTAATGCTGAAGAGAGTCTaGAGACGCTGGGTGAAATGC +
Preference number: 5 (lower is better)
Translates to: LCFCAYGSRCKLSAAAPVMLKRV*RRWVKC
Trigger: GCATTTCACCCAGCGTCTCAAGACTCTCTTCAGCAT...TACTGGAGCAGCAGCTGAGAGTTTACATCTTGATCCATAAGCACAAAAGCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp CCACTAAAAGGGATAGGATCTGCCTCCCTGAGGGCATCAGGAAAGAAATCAAGCAAGATCTTGTATATATaGATGCAGACTGTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: PLKGIGSASLRASGKKSSKILYI*MQTVWR
Trigger: CCTCCAGACAGTCTGCATCAATATATACAAGATCTT...GCTTGATTTCTTTCCTGATGCCCTCAGGGAGGCAGATCCTATCCCTTTTAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp TTCCCCCTATTTTATCTTTATAGTGATCTCAGTAGGTACCCACTATGGTTACTGATAGCAGCAGGATGCTaGGCTGGAGATGATGCCCAG +
Preference number: 5 (lower is better)
Translates to: FPLFYLYSDLSRYPLWLLIAAGC*AGDDAQ
Trigger: CTGGGCATCATCTCCAGCCAAGCATCCTGCTGCTAT...CAGTAACCATAGTGGGTACCTACTGAGATCACTATAAAGATAAAATAGGGGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS-3UTR CAA 90 bp GCTTTTATAAGTTGGCTTGGTGTTTTACTACACAGCAGTAGAGAAGTAGCTAAGGGCATCTGTCACCTGTaGGTTTGCTGTTCGAAACCT +
Preference number: 5 (lower is better)
Translates to: AFISWLGVLLHSSREVAKGICHL*VCCSKP
Trigger: AGGTTTCGAACAGCAAACCAACAGGTGACAGATGCC...CTTAGCTACTTCTCTACTGCTGTGTAGTAAAACACCAAGCCAACTTATAAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS GCA 72 bp CCGCCTGCCCTCGGGCCCCAGGCGCCGCACAAAGGTTaGCAGCGGCCACACCTCCCGGTATCGGCTGCGCAG +
Preference number: 6 (lower is better)
Translates to: PPALGPQAPHKG*QRPHLPVSAAQ
Trigger: CTGCGCAGCCGATACCGGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCCTGGGGCCCGAGGGCAGGCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CAA 72 bp GCCGCCTGCCCTCGGGCCCCAGGCGCCGCACAAAGGTaGCCAGCGGCCACACCTCCCGGTATCGGCTGCGCA +
Preference number: 6 (lower is better)
Translates to: AACPRAPGAAQR*PAATPPGIGCA
Trigger: TGCGCAGCCGATACCGGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCCTGGGGCCCGAGGGCAGGCGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CAA 90 bp GTTGCACAAGCCGCCTGCCCTCGGGCCCCAGGCGCCGCACAAAGGTaGCCAGCGGCCACACCTCCCGGTATCGGCTGCGCAGCAGAGAGC +
Preference number: 6 (lower is better)
Translates to: VAQAACPRAPGAAQR*PAATPPGIGCAAES
Trigger: GCTCTCTGCTGCGCAGCCGATACCGGGAGGTGTGGCCGCTGGCAACCTTTGTGCGGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CAA 72 bp GGCAACCAAAGTGCGGTAGATCTTCGGGTCCCCGGGTaGCACAAGCCGCCTGCCCTCGGGCCCCAGGCGCCG +
Preference number: 6 (lower is better)
Translates to: GNQSAVDLRVPG*HKPPALGPQAP
Trigger: CGGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAACCCGGGGACCCGAAGATCTACCGCACTTTGGTTGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS GCA 72 bp GGTAGATCTTCGGGTCCCCGGGTTGCACAAGCCGCCTaGCCTCGGGCCCCAGGCGCCGCACAAAGGTTGCCA +
Preference number: 6 (lower is better)
Translates to: GRSSGPRVAQAA*PRAPGAAQRLP
Trigger: TGGCAACCTTTGTGCGGCGCCTGGGGCCCGAGGGCAGGCGGCTTGTGCAACCCGGGGACCCGAAGATCTACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS GCA 72 bp GGCACCCATGATTTGCCTGATGGGGTTGGTAGCACCTaGCTGTGGGGTCCCTCCTCCACTCTCGGGACAGGA +
Preference number: 6 (lower is better)
Translates to: GTHDLPDGVGST*LWGPSSTLGTG
Trigger: TCCTGTCCCGAGAGTGGAGGAGGGACCCCACAGGCAGGTGCTACCAACCCCATCAGGCAAATCATGGGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CAA 72 bp CTGGATCCAGGGACAGGGGTCCTGCTGGCTCTGTCCTaGGTGCCTGGGTTCCAACCTGCCCACAGCAAACCT +
Preference number: 6 (lower is better)
Translates to: LDPGTGVLLALS*VPGFQPAHSKP
Trigger: AGGTTTGCTGTGGGCAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS CCA 72 bp ATTAAGCATGGCTGGATCCAGGGACAGGGGTCCTGCTaGCTCTGTCCTTGGTGCCTGGGTTCCAACCTGCCC +
Preference number: 6 (lower is better)
Translates to: IKHGWIQGQGSC*LCPWCLGSNLP
Trigger: GGGCAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAGCCATGCTTAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS GCA 72 bp AAGGAAAGGTCGGCAGGTGGAGGCTGTGAGCCCCAGTaGATGCACACTAGGCATTGGGCAACCAAAGTGCGG +
Preference number: 6 (lower is better)
Translates to: KERSAGGGCEPQ*MHTRHWATKVR
Trigger: CCGCACTTTGGTTGCCCAATGCCTAGTGTGCATGCACTGGGGCTCACAGCCTCCACCTGCCGACCTTTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS GCA 72 bp GCCAGCACGTTTCTCTCGTTGCGCTCGCAGAGTCTCTaGACAACCCTGGCCACCAGCTCTTTCAGGGATGAC +
Preference number: 6 (lower is better)
Translates to: ASTFLSLRSQSL*TTLATSSFRDD
Trigger: GTCATCCCTGAAAGAGCTGGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS GCA 72 bp AAAGGTCGGCAGGTGGAGGCTGTGAGCCCCAGTGCATaGACACTAGGCATTGGGCAACCAAAGTGCGGTAGA +
Preference number: 6 (lower is better)
Translates to: KGRQVEAVSPSA*TLGIGQPKCGR
Trigger: TCTACCGCACTTTGGTTGCCCAATGCCTAGTGTGCATGCACTGGGGCTCACAGCCTCCACCTGCCGACCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS GCA 72 bp GCAGCTCAAAGCCAAAAGCCAGCACGTTTCTCTCGTTaGGCTCGCAGAGTCTCTGCACAACCCTGGCCACCA +
Preference number: 6 (lower is better)
Translates to: AAQSQKPARFSR*ARRVSAQPWPP
Trigger: TGGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGCTGGCTTTTGGCTTTGAGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CCA 72 bp TTCTCTCGTTGCGCTCGCAGAGTCTCTGCACAACCCTaGCCACCAGCTCTTTCAGGGATGACACCTGGTGGA +
Preference number: 6 (lower is better)
Translates to: FSRCARRVSAQP*PPALSGMTPGG
Trigger: TCCACCAGGTGTCATCCCTGAAAGAGCTGGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CAA 72 bp AGCAGCTCAAAGCCAAAAGCCAGCACGTTTCTCTCGTaGCGCTCGCAGAGTCTCTGCACAACCCTGGCCACC +
Preference number: 6 (lower is better)
Translates to: SSSKPKASTFLS*RSQSLCTTLAT
Trigger: GGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGCTGGCTTTTGGCTTTGAGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CAA 90 bp GCCTCGTTAAGCAGCTCAAAGCCAAAAGCCAGCACGTTTCTCTCGTaGCGCTCGCAGAGTCTCTGCACAACCCTGGCCACCAGCTCTTTC +
Preference number: 6 (lower is better)
Translates to: ASLSSSKPKASTFLS*RSQSLCTTLATSSF
Trigger: GAAAGAGCTGGTGGCCAGGGTTGTGCAGAGACTCTGCGAGCGCAACGAGAGAAACGTGCTGGCTTTTGGCTTTGAGCTGCTTAACGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022104.9
ENSMUST00000221522.2
ENSMUST00000223303.2
CDS CAA 90 bp AAGGCATTTTGGCGGGGTGGTGACAGCAGAGATGTGGAGCTGGGCTaGTGTTTACAGCACACCGACCCAGAGAGACTCAGGTCAGACACC +
Preference number: 6 (lower is better)
Translates to: KAFWRGGDSRDVELG*CLQHTDPERLRSDT
Trigger: GGTGTCTGACCTGAGTCTCTCTGGGTCGGTGTGCTGTAAACACAAGCCCAGCTCCACATCTCTGCTGTCACCACCCCGCCAAAATGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CCA 72 bp ACTGGTGAGACTCAGATGCCTCTTTGTACCTCGAGATaGCAAGGCCAGGGGTTTCGGTGCTTCCTGGCGACT +
Preference number: 6 (lower is better)
Translates to: TGETQMPLCTSR*QGQGFRCFLAT
Trigger: AGTCGCCAGGAAGCACCGAAACCCCTGGCCTTGCCATCTCGAGGTACAAAGAGGCATCTGAGTCTCACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CCA 72 bp CATTTTGGCGGGGTGGTGACAGCAGAGATGTGGAGCTaGGCTTGTGTTTACAGCACACCGACCCAGAGAGAC +
Preference number: 6 (lower is better)
Translates to: HFGGVVTAEMWS*ACVYSTPTQRD
Trigger: GTCTCTCTGGGTCGGTGTGCTGTAAACACAAGCCCAGCTCCACATCTCTGCTGTCACCACCCCGCCAAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CCA 72 bp GAAAGGCATTTTGGCGGGGTGGTGACAGCAGAGATGTaGAGCTGGGCTTGTGTTTACAGCACACCGACCCAG +
Preference number: 6 (lower is better)
Translates to: ERHFGGVVTAEM*SWACVYSTPTQ
Trigger: CTGGGTCGGTGTGCTGTAAACACAAGCCCAGCTCCACATCTCTGCTGTCACCACCCCGCCAAAATGCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS GCA 72 bp CCTGCTGGCTCTGTCCTTGGTGCCTGGGTTCCAACCTaGCCACAGCAAACCTTAACAAAGTACATCCTGGGT +
Preference number: 6 (lower is better)
Translates to: PAGSVLGAWVPT*PQQTLTKYILG
Trigger: ACCCAGGATGTACTTTGTTAAGGTTTGCTGTGGGCAGGTTGGAACCCAGGCACCAAGGACAGAGCCAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS CCA 72 bp GCCTGTACGATACATGTGAGTACCATTAAGCATGGCTaGATCCAGGGACAGGGGTCCTGCTGGCTCTGTCCT +
Preference number: 6 (lower is better)
Translates to: ACTIHVSTIKHG*IQGQGSCWLCP
Trigger: AGGACAGAGCCAGCAGGACCCCTGTCCCTGGATCCAGCCATGCTTAATGGTACTCACATGTATCGTACAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS TCA 72 bp CATAGGCCCCGGTCACATCTGCCTGTACGATACATGTaGGTACCATTAAGCATGGCTGGATCCAGGGACAGG +
Preference number: 6 (lower is better)
Translates to: HRPRSHLPVRYM*VPLSMAGSRDR
Trigger: CCTGTCCCTGGATCCAGCCATGCTTAATGGTACTCACATGTATCGTACAGGCAGATGTGACCGGGGCCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222251.2
CDS TCA 72 bp CACTCTCGGGACAGGATAGCATCTGGCCTTCTTAGCTaGAGGCACACTTGTACTGGTGAGACTCAGATGCCT +
Preference number: 6 (lower is better)
Translates to: HSRDRIASGLLS*RHTCTGETQMP
Trigger: AGGCATCTGAGTCTCACCAGTACAAGTGTGCCTTCAGCTAAGAAGGCCAGATGCTATCCTGTCCCGAGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS GCA 72 bp GTCAGACACCTTTCCTTTAGAAGACAAATCTTTCTCTaGAGTAGGCACCTCGGGGGACCGAGCAGGACTTGG +
Preference number: 6 (lower is better)
Translates to: VRHLSFRRQIFL*SRHLGGPSRTW
Trigger: CCAAGTCCTGCTCGGTCCCCCGAGGTGCCTACTGCAGAGAAAGATTTGTCTTCTAAAGGAAAGGTGTCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9
CDS CAA 90 bp GATGGCAAGGCCAGGGGTTTCGGTGCTTCCTGGCGACTACTGCTCTaGATCTGTTGTAAGAACCTAAGGTTAGTGAAATTCCTGCCCACG +
Preference number: 6 (lower is better)
Translates to: DGKARGFGASWRLLL*ICCKNLRLVKFLPT
Trigger: CGTGGGCAGGAATTTCACTAACCTTAGGTTCTTACAACAGATCAAGAGCAGTAGTCGCCAGGAAGCACCGAAACCCCTGGCCTTGCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022104.9