RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TERF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025925

Ensembl transcript IDs: ENSMUST00000027057.8, ENSMUST00000188371.7

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACATCCTTGTATTAAGCTaGATCAAACCCATCCAGCCT +
Preference number: 2 (lower is better)
Translates to: LLREAKLGLLELMSCFEYILVLS*IKPIQP
Trigger: AGGCTGGATGGGTTTGATTCAGCTTAATACAAGGAT...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR TCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACCTCGGGGTCCCCAGCTaGAGCTGGCACTGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: LLREAKLGLLELMSCFEYLGVPS*SWHWSS
Trigger: GCTGCTCCAGTGCCAGCTTCAGCTGGGGACCCCGAG...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR GCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACTCTCCCACCTCCTCCTaGTCTGGAGAATCCGAATCT +
Preference number: 4 (lower is better)
Translates to: LLREAKLGLLELMSCFEYSPTSS*SGESES
Trigger: AGATTCGGATTCTCCAGAGCAGGAGGAGGTGGGAGA...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR TCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACTTGCTTCGTTCCTACTaGAATCTGATGGAGCACGTC +
Preference number: 4 (lower is better)
Translates to: LLREAKLGLLELMSCFEYLLRSY*NLMEHV
Trigger: GACGTGCTCCATCAGATTTCAGTAGGAACGAAGCAA...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR TCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACGTTCCTACTGAAATCTaGTGGAGCACGTCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: LLREAKLGLLELMSCFEYVPTEI*WSTSVF
Trigger: AAACACAGACGTGCTCCATCAGATTTCAGTAGGAAC...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR TCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACGTCTGGCTGATTCTCTaGGACACACAATCTATTCCT +
Preference number: 4 (lower is better)
Translates to: LLREAKLGLLELMSCFEYVWLIL*DTQSIP
Trigger: AGGAATAGATTGTGTGTCTCAGAGAATCAGCCAGAC...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR TCA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACTCATCAGTGTCTGGCTaGTTCTCTGAGACACACAAT +
Preference number: 4 (lower is better)
Translates to: LLREAKLGLLELMSCFEYSSVSG*FSETHN
Trigger: ATTGTGTGTCTCAGAGAATCAGCCAGACACTGATGA...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR CCA 90 bp AGGATTATTCCAATTAAGTTCTTCAGAAAACTCAATGCTAGGTGGCATTTTGTGAGTGTTGGTGGCATCTaGCCTATCCTTAGACGCTTG +
Preference number: 4 (lower is better)
Translates to: RIIPIKFFRKLNARWHFVSVGGI*PILRRL
Trigger: CAAGCGTCTAAGGATAGGCCAGATGCCACCAACACT...CACAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR CCA 90 bp CAAGGATTATTCCAATTAAGTTCTTCAGAAAACTCAATGCTAGGTGGCATTTTGATCTATTCCTTCCACTaGTTCTTCGGTTCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: QGLFQLSSSENSMLGGILIYSFH*FFGSFP
Trigger: TGGAAAGGAACCGAAGAACCAGTGGAAGGAATAGAT...CAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR GCA 90 bp CAAGGATTATTCCAATTAAGTTCTTCAGAAAACTCAATGCTAGGTGGCATTTTGAAGAGTTCCTGTTCTTaGTTCGTTCCTACTGAAATC +
Preference number: 4 (lower is better)
Translates to: QGLFQLSSSENSMLGGILKSSCS*FVPTEI
Trigger: GATTTCAGTAGGAACGAAGCAAGAACAGGAACTCTT...CAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR CCA 90 bp CAAGGATTATTCCAATTAAGTTCTTCAGAAAACTCAATGCTAGGTGGCATTTTGGTTTCTGTAGACTGCTaGCCATTAACACTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: QGLFQLSSSENSMLGGILVSVDC*PLTLFS
Trigger: AGAGAAAAGTGTTAATGGCCAGCAGTCTACAGAAAC...CAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR GCA 90 bp AGGATTATTCCAATTAAGTTCTTCAGAAAACTCAATGCTAGGTGGCATTTTGTGTTCAAATACTTCTTCTaGTTCCTTAAAGCTGCCAAT +
Preference number: 4 (lower is better)
Translates to: RIIPIKFFRKLNARWHFVFKYFF*FLKAAN
Trigger: ATTGGCAGCTTTAAGGAAGCAGAAGAAGTATTTGAA...CACAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS CCA 90 bp CTGGCACTGGAGCAGCTCCGCGTCGTCTCCCACCTCCTCCTGCTCTaGAGAATCCGAATCTGTCCAGCCCTCACGGCTCGGCGCGTCCCG +
Preference number: 5 (lower is better)
Translates to: LALEQLRVVSHLLLL*RIRICPALTARRVP
Trigger: CGGGACGCGCCGAGCCGTGAGGGCTGGACAGATTCGGATTCTCCAGAGCAGGAGGAGGTGGGAGACGACGCGGAGCTGCTCCAGTGCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS TCA 90 bp TCTTTTCCTGCGTCCACTTTTGTCATCAGTGTCTGGCTGATTCTCTaGGACACACAATCTATTCCTTCCACTGGTTCTTCGGTTCCTTTC +
Preference number: 5 (lower is better)
Translates to: SFPASTFVISVWLIL*DTQSIPSTGSSVPF
Trigger: GAAAGGAACCGAAGAACCAGTGGAAGGAATAGATTGTGTGTCTCAGAGAATCAGCCAGACACTGATGACAAAAGTGGACGCAGGAAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS TCA 90 bp TTCCTTCCACTGGTTCTTCGGTTCCTTTCCATCGTTGTTTCACACTaGAGAGTTCCTGTTCTTGCTTCGTTCCTACTGAAATCTGATGGA +
Preference number: 5 (lower is better)
Translates to: FLPLVLRFLSIVVSH*RVPVLASFLLKSDG
Trigger: TCCATCAGATTTCAGTAGGAACGAAGCAAGAACAGGAACTCTTCAGTGTGAAACAACGATGGAAAGGAACCGAAGAACCAGTGGAAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS TCA 90 bp TCTGATGGAGCACGTCTGTGTTTTAACTGCGATAAGGCGTTCTTGTaGGACCTTATTGAGGATACTGTATCCACTAAGGGTTCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: SDGARLCFNCDKAFL*DLIEDTVSTKGSVS
Trigger: AGAAACTGAACCCTTAGTGGATACAGTATCCTCAATAAGGTCTCACAAGAACGCCTTATCGCAGTTAAAACACAGACGTGCTCCATCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS-3UTR CAA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACGCTATAGCTGAAGTGTaGGAAAAGGGAGTGGAACAC +
Preference number: 5 (lower is better)
Translates to: LLREAKLGLLELMSCFEYAIAEV*EKGVEH
Trigger: GTGTTCCACTCCCTTTTCCAACACTTCAGCTATAGC...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR CAA 90 bp CTTTTGAGAGAAGCCAAGCTAGGCTTGTTAGAACTCATGAGTTGTTTTGAATACTCTTGTGAGACCTTATaGAGGATACTGTATCCACTA +
Preference number: 5 (lower is better)
Translates to: LLREAKLGLLELMSCFEYSCETL*RILYPL
Trigger: TAGTGGATACAGTATCCTCAATAAGGTCTCACAAGA...GTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS-3UTR CAA 90 bp AGGATTATTCCAATTAAGTTCTTCAGAAAACTCAATGCTAGGTGGCATTTTGTGATACACAGTTTTCAATaGGTAAGCTGTAAGTCTGTG +
Preference number: 5 (lower is better)
Translates to: RIIPIKFFRKLNARWHFVIHSFQ*VSCKSV
Trigger: CACAGACTTACAGCTTACCAATTGAAAACTGTGTAT...CACAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000188371.7
CDS TCA 72 bp AGCTCCGCGTTCTCCATCTCTCTCGGGGTCCCCAGCTaGAGCTGGCACTGGAGCAGCTCCGCGTCGTCTCCC +
Preference number: 6 (lower is better)
Translates to: SSAFSISLGVPS*SWHWSSSASSP
Trigger: GGGAGACGACGCGGAGCTGCTCCAGTGCCAGCTTCAGCTGGGGACCCCGAGAGAGATGGAGAACGCGGAGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS CCA 72 bp GAGCAGCTCCGCGTCGTCTCCCACCTCCTCCTGCTCTaGAGAATCCGAATCTGTCCAGCCCTCACGGCTCGG +
Preference number: 6 (lower is better)
Translates to: EQLRVVSHLLLL*RIRICPALTAR
Trigger: CCGAGCCGTGAGGGCTGGACAGATTCGGATTCTCCAGAGCAGGAGGAGGTGGGAGACGACGCGGAGCTGCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS GCA 72 bp CACTGGAGCAGCTCCGCGTCGTCTCCCACCTCCTCCTaGTCTGGAGAATCCGAATCTGTCCAGCCCTCACGG +
Preference number: 6 (lower is better)
Translates to: HWSSSASSPTSS*SGESESVQPSR
Trigger: CCGTGAGGGCTGGACAGATTCGGATTCTCCAGAGCAGGAGGAGGTGGGAGACGACGCGGAGCTGCTCCAGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS CAA 90 bp AGTGTCCATTCCAGTGTTGGTGGCATCTGGCCTATCCTTAGACGCTaGTGTCCTCGCTTTCTCATTTTCCACTACTTTTGTTGCTGCCTT +
Preference number: 6 (lower is better)
Translates to: SVHSSVGGIWPILRR*CPRFLIFHYFCCCL
Trigger: AAGGCAGCAACAAAAGTAGTGGAAAATGAGAAAGCGAGGACACAAGCGTCTAAGGATAGGCCAGATGCCACCAACACTGGAATGGACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS TCA 72 bp GCGTCCACTTTTGTCATCAGTGTCTGGCTGATTCTCTaGGACACACAATCTATTCCTTCCACTGGTTCTTCG +
Preference number: 6 (lower is better)
Translates to: ASTFVISVWLIL*DTQSIPSTGSS
Trigger: CGAAGAACCAGTGGAAGGAATAGATTGTGTGTCTCAGAGAATCAGCCAGACACTGATGACAAAAGTGGACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS CAA 72 bp TCCAGTGTTGGTGGCATCTGGCCTATCCTTAGACGCTaGTGTCCTCGCTTTCTCATTTTCCACTACTTTTGT +
Preference number: 6 (lower is better)
Translates to: SSVGGIWPILRR*CPRFLIFHYFC
Trigger: ACAAAAGTAGTGGAAAATGAGAAAGCGAGGACACAAGCGTCTAAGGATAGGCCAGATGCCACCAACACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS CAA 90 bp ACACTTTTCTCTTTATTCAAACCAACTTCAGTGTCCATTCCAGTGTaGGTGGCATCTGGCCTATCCTTAGACGCTTGTGTCCTCGCTTTC +
Preference number: 6 (lower is better)
Translates to: TLFSLFKPTSVSIPV*VASGLSLDACVLAF
Trigger: GAAAGCGAGGACACAAGCGTCTAAGGATAGGCCAGATGCCACCAACACTGGAATGGACACTGAAGTTGGTTTGAATAAAGAGAAAAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS TCA 72 bp GCACGTCTGTGTTTTAACTGCGATAAGGCGTTCTTGTaGGACCTTATTGAGGATACTGTATCCACTAAGGGT +
Preference number: 6 (lower is better)
Translates to: ARLCFNCDKAFL*DLIEDTVSTKG
Trigger: ACCCTTAGTGGATACAGTATCCTCAATAAGGTCTCACAAGAACGCCTTATCGCAGTTAAAACACAGACGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7
CDS CAA 72 bp GTTTTAACTGCGATAAGGCGTTCTTGTGAGACCTTATaGAGGATACTGTATCCACTAAGGGTTCAGTTTCTG +
Preference number: 6 (lower is better)
Translates to: VLTAIRRSCETL*RILYPLRVQFL
Trigger: CAGAAACTGAACCCTTAGTGGATACAGTATCCTCAATAAGGTCTCACAAGAACGCCTTATCGCAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027057.8
ENSMUST00000188371.7