RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TENT4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034575

Ensembl transcript IDs: ENSMUST00000044081.9, ENSMUST00000198607.5, ENSMUST00000223344.3

Found 274 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTGGATaGTGGTCTCGGCTCCCCTGTGGTGCCCGAGCGAGGCCTTTGGGC +
Preference number: 1 (lower is better)
Translates to: TSAGLRLADSGGGAG*WSRLPCGARARPLG
Trigger: GCCCAAAGGCCTCGCTCGGGCACCACAGGGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTaGAGGTGCTGGATGCTGGTCTCGGCTCCCCTGTGGTGCCCGAGC +
Preference number: 1 (lower is better)
Translates to: NMQSDQCWAALGRQR*RCWMLVSAPLWCPS
Trigger: GCTCGGGCACCACAGGGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR GCA 90 bp ACAGCACTCGGCTTGACACTCTGTACTGGTGGACAAGAAGCAACCTaGCTGTGGTGTGCAGCAGGTCCAGACCCCCGTTTTAGAAGCAGA +
Preference number: 1 (lower is better)
Translates to: TALGLTLCTGGQEAT*LWCAAGPDPRFRSR
Trigger: TCTGCTTCTAAAACGGGGGTCTGGACCTGCTGCACACCACAGGCAGGTTGCTTCTTGTCCACCAGTACAGAGTGTCAAGCCGAGTGCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 90 bp CTCGGCTTGACACTCTGTACTGGTGGACAAGAAGCAACCTGCCTGTaGTGTGCAGCAGGTCCAGACCCCCGTTTTAGAAGCAGAAGTCAG +
Preference number: 1 (lower is better)
Translates to: LGLTLCTGGQEATCL*CAAGPDPRFRSRSQ
Trigger: CTGACTTCTGCTTCTAAAACGGGGGTCTGGACCTGCTGCACACCACAGGCAGGTTGCTTCTTGTCCACCAGTACAGAGTGTCAAGCCGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 90 bp GTCCCAAATTTTCAAACAAGACATGAGGGCAGTAAAACAGCAGCCTaGCCACTCCGTCAGAAGACACGGAGCAGGGCTTGGCGTCTCTGC +
Preference number: 1 (lower is better)
Translates to: VPNFQTRHEGSKTAA*PLRQKTRSRAWRLC
Trigger: GCAGAGACGCCAAGCCCTGCTCCGTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTTGAAAATTTGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 90 bp CACCACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTaGCGAGGTGTCCAATGTCACTCAGACATCCATTCAGAATTTCCA +
Preference number: 1 (lower is better)
Translates to: HHGSRRQTQTHRACP*RGVQCHSDIHSEFP
Trigger: TGGAAATTCTGAATGGATGTCTGAGTGACATTGGACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 90 bp GTAAACTGTAGCATATGGCCACAGTGGTCGCCAGGCCAATTCATCTaGTTCACCATGACGGAGACGGACACATACCTGTGCCTGTGGATG +
Preference number: 1 (lower is better)
Translates to: VNCSIWPQWSPGQFI*FTMTETDTYLCLWM
Trigger: CATCCACAGGCACAGGTATGTGTCCGTCTCCGTCATGGTGAACCAGATGAATTGGCCTGGCGACCACTGTGGCCATATGCTACAGTTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 90 bp GCAGAAGTCAGAGGGCCTACAACTGCAAGCACTCCAGGACAACCGTaGTGCTTGAGAATCAGGGTCAGGCAATGGATGGATTCTTGTTCA +
Preference number: 1 (lower is better)
Translates to: AEVRGPTTASTPGQP*CLRIRVRQWMDSCS
Trigger: TGAACAAGAATCCATCCATTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGTAGGCCCTCTGACTTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 90 bp GAGGTGTCCAATGTCACTCAGACATCCATTCAGAATTTCCACTGCTaGATGTCAATCAGGTGGCACAGCACTCGGCTTGACACTCTGTAC +
Preference number: 1 (lower is better)
Translates to: EVSNVTQTSIQNFHC*MSIRWHSTRLDTLY
Trigger: GTACAGAGTGTCAAGCCGAGTGCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATTGGACACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 90 bp ACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTaGCACAGCACTCGGCTTGACACTCTGTACTGGTGGACAAGAAGC +
Preference number: 1 (lower is better)
Translates to: TQTSIQNFHCCMSIR*HSTRLDTLYWWTRS
Trigger: GCTTCTTGTCCACCAGTACAGAGTGTCAAGCCGAGTGCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CAA 90 bp GCGGCCACCACACAAACATGCAGAGTGACCAGTGCTGGGCTGCGCTaGGCAGACAGCGGTGGAGGTGCTGGATGCTGGTCTCGGCTCCCC +
Preference number: 2 (lower is better)
Translates to: AATTQTCRVTSAGLR*ADSGGGAGCWSRLP
Trigger: GGGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTTTGTGTGGTGGCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCATCGGCTCCCCTGTGGTaGCCGAGCGAGGCCTTTGGG +
Preference number: 2 (lower is better)
Translates to: LECLPESTASPRQQEADPSAPLW*PSEAFG
Trigger: CCCAAAGGCCTCGCTCGGGCACCACAGGGGAGCCGA...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCTCGGCTCCCCTGTGGTaGCCGAGCGAGGCCTTTGGG +
Preference number: 2 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVSAPLW*PSEAFG
Trigger: CCCAAAGGCCTCGCTCGGGCACCACAGGGGAGCCGA...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR TCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCAAAATGGCCACCTAGCTaGCCCGGCTGCACAGCCGCA +
Preference number: 2 (lower is better)
Translates to: LECLPESTASPRQQEADPKWPPS*PGCTAA
Trigger: TGCGGCTGTGCAGCCGGGTCAGCTAGGTGGCCATTT...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCAATGCAGAGTGACCAGTaGTGGGCTGCGCTTGGCAGA +
Preference number: 2 (lower is better)
Translates to: LECLPESTASPRQQEADPMQSDQ*WAALGR
Trigger: TCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCAT...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCACCTAGGCCGCCCTGCTaGGCACAGATGAAGACTTCT +
Preference number: 2 (lower is better)
Translates to: LECLPESTASPRQQEADPPRPPC*AQMKTS
Trigger: AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGG...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTAGACAGCGGTGGAGGTaGTGGATGCTGGTCTCGGCT +
Preference number: 2 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSRQRWR*WMLVSA
Trigger: AGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCT...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCCCAGGACAACCGTGGTaGTTGAGAATCAGGGTCAGG +
Preference number: 2 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVPGQPW*LRIRVR
Trigger: CCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGG...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCAGACAGCGGTGGAGGTaGTGGATGCTGGTCTCGGCT +
Preference number: 2 (lower is better)
Translates to: TCIVYLYASDARHQPLLGRQRWR*WMLVSA
Trigger: AGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCT...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGCAGCGGTGGAGGTGCTaGATGCTGGTCTCGGCTCCC +
Preference number: 2 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMQRWRC*MLVSAP
Trigger: GGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTG...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR TCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGAAATGGCCACCTAGCTaGCCCGGCTGCACAGCCGCA +
Preference number: 2 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMKWPPS*PGCTAA
Trigger: TGCGGCTGTGCAGCCGGGTCAGCTAGGTGGCCATTT...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACTCGGCTCCCCTGTGGTaGCCGAGCGAGGCCTTTGGG +
Preference number: 2 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHSAPLW*PSEAFG
Trigger: CCCAAAGGCCTCGCTCGGGCACCACAGGGGAGCCGA...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CAA 90 bp ACAGCCTCACCACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTaGTCCTTGGCGAGGTGTCCAATGTCACTCAGACATCCATTCAGA +
Preference number: 2 (lower is better)
Translates to: TASPRQQEADPDTQS*SLARCPMSLRHPFR
Trigger: TCTGAATGGATGTCTGAGTGACATTGGACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR TCA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGCACAAACATGCAGAGTaGCCAGTGCTGGGCTGCGCT +
Preference number: 2 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTHKHAE*PVLGCA
Trigger: AGCGCAGCCCAGCACTGGTCACTCTGCATGTTTGTG...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR TCA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGCCTGCTGGGCACAGATaGAGACTTCTAGGCAGGCAG +
Preference number: 2 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTPAGHR*RLLGRQ
Trigger: CTGCCTGCCTAGAAGTCTTCATCTGTGCCCAGCAGG...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGATGCAGAGTGACCAGTaGTGGGCTGCGCTTGGCAGA +
Preference number: 2 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTMQSDQ*WAALGR
Trigger: TCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCAT...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGTCCTCTGCTCTGGAATaGCTCCCAGAGTCAACAGCC +
Preference number: 2 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTSSALE*LPESTA
Trigger: GGCTGTTGACTCTGGGAGGCATTCCAGAGCAGAGGA...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGCAGCGGTGGAGGTGCTaGATGCTGGTCTCGGCTCCC +
Preference number: 2 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRQRWRC*MLVSAP
Trigger: GGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTG...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR CCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCCTTGGCAGACAGCGGTaGAGGTGCTGGATGCTGGTC +
Preference number: 2 (lower is better)
Translates to: KELFCKMDAATTQTCRVTLGRQR*RCWMLV
Trigger: GACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAG...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CAA 90 bp TCACCACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTaGGCGAGGTGTCCAATGTCACTCAGACATCCATTCAGAATTTCC +
Preference number: 2 (lower is better)
Translates to: SPRQQEADPDTQSLS*ARCPMSLRHPFRIS
Trigger: GGAAATTCTGAATGGATGTCTGAGTGACATTGGACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCGTGTTCATGTCAGGATaGTATCAGATAACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVVFMSG*YQITSQ
Trigger: TTGGCTGGTTATCTGATAGCATCCTGACATGAACAC...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCACGAGTGCATACCTATaGAGATTCCTCAATGGAATC +
Preference number: 2 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVTSAYL*RFLNGI
Trigger: GATTCCATTGAGGAATCTGCATAGGTATGCACTCGT...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CCA 90 bp TCCACATGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGCAGCGGTGGAGGTGCTaGATGCTGGTCTCGGCTCCC +
Preference number: 2 (lower is better)
Translates to: STCSKASQMSTRSCSVRWQRWRC*MLVSAP
Trigger: GGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTG...CCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACATGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR CCA 90 bp TCCACATGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGGTGCTGGGCTGCGCTTaGCAGACAGCGGTGGAGGTG +
Preference number: 2 (lower is better)
Translates to: STCSKASQMSTRSCSVRWVLGCA*QTAVEV
Trigger: CACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCAC...CCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACATGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR CCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACCCTAGGCCGCCCTGCTaGGCACAGATGAAGACTTCT +
Preference number: 2 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHPRPPC*AQMKTS
Trigger: AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGG...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CCA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCCTGCCAGGTACACACTaGCCTCACAGAACTATCAAG +
Preference number: 2 (lower is better)
Translates to: TCIVYLYASDARHQPLLGLPGTH*PHRTIK
Trigger: CTTGATAGTTCTGTGAGGCCAGTGTGTACCTGGCAG...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR TCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACCACAAACATGCAGAGTaGCCAGTGCTGGGCTGCGCT +
Preference number: 2 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHHKHAE*PVLGCA
Trigger: AGCGCAGCCCAGCACTGGTCACTCTGCATGTTTGTG...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR CCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGCTTGGCAGACAGCGGTaGAGGTGCTGGATGCTGGTC +
Preference number: 2 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRLGRQR*RCWMLV
Trigger: GACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAG...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR-3UTR CCA 90 bp AACTATCAAGTTGACTTGGCTCCTTCACTGCATCTGACCAAAAGAAAAGACATAGTGCTGGGCTGCGCTTaGCAGACAGCGGTGGAGGTG +
Preference number: 2 (lower is better)
Translates to: NYQVDLAPSLHLTKRKDIVLGCA*QTAVEV
Trigger: CACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCAC...TATGTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp ACAACTGCAAGCACTCCAGGACAACCGTGGTGCTTGAGAATCAGGGTCAGGCAAGTGTTCATGTCAGGATaGTATCAGATAACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: TTASTPGQPWCLRIRVRQVFMSG*YQITSQ
Trigger: TTGGCTGGTTATCTGATAGCATCCTGACATGAACAC...TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CCA 90 bp AAGACAGTGGTTGTGGCAGAATACACTTGCATAGTATACCTGTATGCTTCTGACCTGCCAGGTACACACTaGCCTCACAGAACTATCAAG +
Preference number: 2 (lower is better)
Translates to: KTVVVAEYTCIVYLYASDLPGTH*PHRTIK
Trigger: CTTGATAGTTCTGTGAGGCCAGTGTGTACCTGGCAG...GTCAGAAGCATACAGGTATACTATGCAAGTGTATTCTGCCACAACCACTGTCTT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR TCA 90 bp AAGACAGTGGTTGTGGCAGAATACACTTGCATAGTATACCTGTATGCTTCTGACACAGAACTATCAAGTTaGCTTGGCTCCTTCACTGCA +
Preference number: 2 (lower is better)
Translates to: KTVVVAEYTCIVYLYASDTELSS*LGSFTA
Trigger: TGCAGTGAAGGAGCCAAGTCAACTTGATAGTTCTGT...GTCAGAAGCATACAGGTATACTATGCAAGTGTATTCTGCCACAACCACTGTCTT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR GCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGTTCTGGCACTTTAAATaGTGGATTTGGTGTCTAGTT +
Preference number: 2 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWFWHFK*WIWCLV
Trigger: AACTAGACACCAAATCCAGCATTTAAAGTGCCAGAA...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp CAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTaGTGGATGCTGGTCTCGGCTCCCCTGTGGTGCCCG +
Preference number: 3 (lower is better)
Translates to: QCWAALGRQRWR*WMLVSAPLWCP
Trigger: CGGGCACCACAGGGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CCA 72 bp CTGCGCTTGGCAGACAGCGGTGGAGGTGCTGGATGCTaGTCTCGGCTCCCCTGTGGTGCCCGAGCGAGGCCT +
Preference number: 3 (lower is better)
Translates to: LRLADSGGGAGC*SRLPCGARARP
Trigger: AGGCCTCGCTCGGGCACCACAGGGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CCA 72 bp TGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTaGATGCTGGTCTCGGCTCCCCTGTGGTGCCCGAGC +
Preference number: 3 (lower is better)
Translates to: CWAALGRQRWRC*MLVSAPLWCPS
Trigger: GCTCGGGCACCACAGGGGAGCCGAGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR GCA 72 bp TGGAGGTGCTGGATGCTGGTCTCGGCTCCCCTGTGGTaGCCGAGCGAGGCCTTTGGGCAGTCAGTCAGGACC +
Preference number: 3 (lower is better)
Translates to: WRCWMLVSAPLW*PSEAFGQSVRT
Trigger: GGTCCTGACTGACTGCCCAAAGGCCTCGCTCGGGCACCACAGGGGAGCCGAGACCAGCATCCAGCACCTCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CCA 72 bp ACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTaGGCCCACACTGGGGCTGTGCTCTCCTGTGATACA +
Preference number: 3 (lower is better)
Translates to: TCMLLTPGTSRS*AHTGAVLSCDT
Trigger: TGTATCACAGGAGAGCACAGCCCCAGTGTGGGCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR TCA 72 bp GACAGACACGATGAGAACCCCAAATGGCCACCTAGCTaGCCCGGCTGCACAGCCGCACATCCAGTCCCTGAC +
Preference number: 3 (lower is better)
Translates to: DRHDENPKWPPS*PGCTAAHPVPD
Trigger: GTCAGGGACTGGATGTGCGGCTGTGCAGCCGGGTCAGCTAGGTGGCCATTTGGGGTTCTCATCGTGTCTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CCA 72 bp GCACATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTaGGCACAGATGAAGACTTCTAGGCAGGCAGACGCA +
Preference number: 3 (lower is better)
Translates to: AHPVPDTPRPPC*AQMKTSRQADA
Trigger: TGCGTCTGCCTGCCTAGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CCA 72 bp GGCCCAAGGCCGACAGCCAGGCTGCCAGGTACACACTaGCCTCACAGAACTATCAAGTTGACTTGGCTCCTT +
Preference number: 3 (lower is better)
Translates to: GPRPTARLPGTH*PHRTIKLTWLL
Trigger: AAGGAGCCAAGTCAACTTGATAGTTCTGTGAGGCCAGTGTGTACCTGGCAGCCTGGCTGTCGGCCTTGGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 72 bp AGGTGGCACAGCACTCGGCTTGACACTCTGTACTGGTaGACAAGAAGCAACCTGCCTGTGGTGTGCAGCAGG +
Preference number: 3 (lower is better)
Translates to: RWHSTRLDTLYW*TRSNLPVVCSR
Trigger: CCTGCTGCACACCACAGGCAGGTTGCTTCTTGTCCACCAGTACAGAGTGTCAAGCCGAGTGCTGTGCCACCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CAA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCACACAGAACTATCAAGTaGACTTGGCTCCTTCACTGC +
Preference number: 3 (lower is better)
Translates to: LECLPESTASPRQQEADPHRTIK*TWLLHC
Trigger: GCAGTGAAGGAGCCAAGTCAACTTGATAGTTCTGTG...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp GGCTTGACACTCTGTACTGGTGGACAAGAAGCAACCTaGCTGTGGTGTGCAGCAGGTCCAGACCCCCGTTTT +
Preference number: 3 (lower is better)
Translates to: GLTLCTGGQEAT*LWCAAGPDPRF
Trigger: AAAACGGGGGTCTGGACCTGCTGCACACCACAGGCAGGTTGCTTCTTGTCCACCAGTACAGAGTGTCAAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp ACAGGCCCCTCCCTCCTCACGGTGTTCATGTCAGGATaGTATCAGATAACCAGCCAACACGAGGAACCCAAC +
Preference number: 3 (lower is better)
Translates to: TGPSLLTVFMSG*YQITSQHEEPN
Trigger: GTTGGGTTCCTCGTGTTGGCTGGTTATCTGATAGCATCCTGACATGAACACCGTGAGGAGGGAGGGGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 72 bp ACACTCTGTACTGGTGGACAAGAAGCAACCTGCCTGTaGTGTGCAGCAGGTCCAGACCCCCGTTTTAGAAGC +
Preference number: 3 (lower is better)
Translates to: TLCTGGQEATCL*CAAGPDPRFRS
Trigger: GCTTCTAAAACGGGGGTCTGGACCTGCTGCACACCACAGGCAGGTTGCTTCTTGTCCACCAGTACAGAGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 72 bp AGCATATGGCCACAGTGGTCGCCAGGCCAATTCATCTaGTTCACCATGACGGAGACGGACACATACCTGTGC +
Preference number: 3 (lower is better)
Translates to: SIWPQWSPGQFI*FTMTETDTYLC
Trigger: GCACAGGTATGTGTCCGTCTCCGTCATGGTGAACCAGATGAATTGGCCTGGCGACCACTGTGGCCATATGCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CAA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCATGTGGCAGAATACACTaGCATAGTATACCTGTATGC +
Preference number: 3 (lower is better)
Translates to: LECLPESTASPRQQEADPCGRIH*HSIPVC
Trigger: GCATACAGGTATACTATGCAAGTGTATTCTGCCACA...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp TTTCAAACAAGACATGAGGGCAGTAAAACAGCAGCCTaGCCACTCCGTCAGAAGACACGGAGCAGGGCTTGG +
Preference number: 3 (lower is better)
Translates to: FQTRHEGSKTAA*PLRQKTRSRAW
Trigger: CCAAGCCCTGCTCCGTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp GGGCCTACAACTGCAAGCACTCCAGGACAACCGTGGTaGTTGAGAATCAGGGTCAGGCAATGGATGGATTCT +
Preference number: 3 (lower is better)
Translates to: GPTTASTPGQPW*LRIRVRQWMDS
Trigger: AGAATCCATCCATTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGTAGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp CCCCGTTTTAGAAGCAGAAGTCAGAGGGCCTACAACTaGAAGCACTCCAGGACAACCGTGGTGCTTGAGAAT +
Preference number: 3 (lower is better)
Translates to: PRFRSRSQRAYN*KHSRTTVVLEN
Trigger: ATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGTAGGCCCTCTGACTTCTGCTTCTAAAACGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CAA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGCACAGAACTATCAAGTaGACTTGGCTCCTTCACTGC +
Preference number: 3 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTHRTIK*TWLLHC
Trigger: GCAGTGAAGGAGCCAAGTCAACTTGATAGTTCTGTG...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR-3UTR CAA 90 bp ACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGCACAGCGGACAACCGTGGTGCTaGAGAATCAGGGTCAGGCAA +
Preference number: 3 (lower is better)
Translates to: TQTSIQNFHCCMSIRWHSGQPWC*RIRVRQ
Trigger: TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCC...GCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 72 bp TCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTaGCACAGCACTCGGCTTGACACTCTGTACTGGTGG +
Preference number: 3 (lower is better)
Translates to: SIQNFHCCMSIR*HSTRLDTLYWW
Trigger: CCACCAGTACAGAGTGTCAAGCCGAGTGCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 72 bp AACGCACATCTGCGGGTCACTCGAACGGCCCCACGGTaGCTCCTTAATGCAGATACAGTCAATATTGCTAAT +
Preference number: 3 (lower is better)
Translates to: NAHLRVTRTAPR*LLNADTVNIAN
Trigger: ATTAGCAATATTGACTGTATCTGCATTAAGGAGCCACCGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTaGATGTCAATCAGGTGGCACAGCACTCGGCTTGAC +
Preference number: 3 (lower is better)
Translates to: NVTQTSIQNFHC*MSIRWHSTRLD
Trigger: GTCAAGCCGAGTGCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR GCA 72 bp TCCAATGTCACTCAGACATCCATTCAGAATTTCCACTaGTGCATGTCAATCAGGTGGCACAGCACTCGGCTT +
Preference number: 3 (lower is better)
Translates to: SNVTQTSIQNFH*CMSIRWHSTRL
Trigger: AAGCCGAGTGCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR TCA 72 bp TGCCAGGTACACACTGGCCTCACAGAACTATCAAGTTaGCTTGGCTCCTTCACTGCATCTGACCAAAAGAAA +
Preference number: 3 (lower is better)
Translates to: CQVHTGLTELSS*LGSFTASDQKK
Trigger: TTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTTCTGTGAGGCCAGTGTGTACCTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CCA 72 bp TGGTATCATTTTGTAAACTGTAGCATATGGCCACAGTaGTCGCCAGGCCAATTCATCTGGTTCACCATGACG +
Preference number: 3 (lower is better)
Translates to: WYHFVNCSIWPQ*SPGQFIWFTMT
Trigger: CGTCATGGTGAACCAGATGAATTGGCCTGGCGACCACTGTGGCCATATGCTACAGTTTACAAAATGATACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCGGCCGAGCGAGGTGCTaGTGGAGGACGACGACGAGC +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCGRARC*WRTTTS
Trigger: GCTCGTCGTCGTCCTCCAGCAGCACCTCGCTCGGCC...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCCATGAAGTCCCTGGATaGCCGGGCTGTACGCGCGGC +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVHEVPG*PGCTRG
Trigger: GCCGCGCGTACAGCCCGGGCATCCAGGGACTTCATG...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCCAGTGGGTTGGGGGATaGCGAGGGAATGGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCQWVGG*RGNGWG
Trigger: TCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTG...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCAGCCTCACAGCTCCACTaGCCACAGAGCTGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: LECLPESTASPRQQEADPASQLH*PQSCSR
Trigger: GCGGCTACAGCTCTGTGGGCAGTGGAGCTGTGAGGC...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTTTGGCCGGCCCCTTCTaGTCCGGCTGGATCCAGGCC +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSLAGPF*SGWIQA
Trigger: GGCCTGGATCCAGCCGGAGCAGAAGGGGCCGGCCAA...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCGGCTCAGCCACGTTGTaGTTCCGGAGGGCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCGSATL*FRRACS
Trigger: GGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCC...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCACAGGCTGGGGTTTGCTaGTGGGCATTGGCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: LECLPESTASPRQQEADPQAGVC*WALARL
Trigger: CAGCCTTGCCAATGCCCAGCAGCAAACCCCAGCCTG...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCACAGCAGGCTGGGGTTTaGTGCTGGGCATTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: LECLPESTASPRQQEADPQQAGV*CWALAR
Trigger: CCTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTG...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCGCTGGGGTTTGCTGCTaGGCATTGGCAAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVAGVCC*ALARLW
Trigger: CCACAGCCTTGCCAATGCCCAGCAGCAAACCCCAGC...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTCGAGCGAGGTGCTGCTaGAGGACGACGACGAGCAGC +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSRARCC*RTTTSS
Trigger: GCTGCTCGTCGTCGTCCTCCAGCAGCACCTCGCTCG...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCAAACACTGGGTGTGGTaGAGGGCGGTGTGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVKHWVW*RAVCRS
Trigger: ACTCCGACACACCGCCCTGCACCACACCCAGTGTTT...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGCCACGGCCCACGCCCTaGGAGGTCTCCCAGATCTGC +
Preference number: 4 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTPRPTP*EVSQIC
Trigger: GCAGATCTGGGAGACCTCGCAGGGCGTGGGCCGTGG...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCTGTTGGGGTAAGACCTaGCGAGCGGTGACACAGCGT +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVCWGKT*RAVTQR
Trigger: ACGCTGTGTCACCGCTCGCCAGGTCTTACCCCAACA...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCCCTGAAGACAGCAGCTaGGGACTGGACAGGGACAGA +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVPEDSS*GLDRDR
Trigger: TCTGTCCCTGTCCAGTCCCCAGCTGCTGTCTTCAGG...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CAA 72 bp AGCCTGCCCACTCCGTCAGAAGACACGGAGCAGGGCTaGGCGTCTCTGCCTGTGACAGACACGATGAGAACC +
Preference number: 4 (lower is better)
Translates to: SLPTPSEDTEQG*ASLPVTDTMRT
Trigger: GGTTCTCATCGTGTCTGTCACAGGCAGAGACGCCAAGCCCTGCTCCGTGTCTTCTGACGGAGTGGGCAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCATTCTTGATGAACTCTaGCGCCCGCACGCCAGTCTC +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCILDEL*RPHASL
Trigger: GAGACTGGCGTGCGGGCGGCAGAGTTCATCAAGAAT...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCCTGGGCTCCCGGCTCTaGATCTGCTCCCCATTGCAC +
Preference number: 4 (lower is better)
Translates to: TCIVYLYASDARHQPLLGLGSRL*ICSPLH
Trigger: GTGCAATGGGGAGCAGATGCAGAGCCGGGAGCCCAG...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTCAGCAGGCTGGGGTTTaGTGCTGGGCATTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSQQAGV*CWALAR
Trigger: CCTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTG...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACCGCGGCCGAGCGAGGTaGTGCTGGAGGACGACGACG +
Preference number: 4 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHRGRAR*CWRTTT
Trigger: CGTCGTCGTCCTCCAGCAGCACCTCGCTCGGCCGCG...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCGGGATGCCGAGGGAATaGCTGGGGAAGTTACACTGT +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVGMPRE*LGKLHC
Trigger: ACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCC...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
3UTR CAA 72 bp ACACAAACATGCAGAGTGACCAGTGCTGGGCTGCGCTaGGCAGACAGCGGTGGAGGTGCTGGATGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: TQTCRVTSAGLR*ADSGGGAGCWS
Trigger: AGACCAGCATCCAGCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTTTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCACTCCCTTCTCATGGCTaGTTCTTCAGGACAAGGGGA +
Preference number: 4 (lower is better)
Translates to: LECLPESTASPRQQEADPLPSHG*FFRTRG
Trigger: TCCCCTTGTCCTGAAGAAGCAGCCATGAGAAGGGAG...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCAGTAAGGGGTCCTCAATaGACAGCATCGATGGTCGGT +
Preference number: 4 (lower is better)
Translates to: LECLPESTASPRQQEADPVRGPQ*TASMVG
Trigger: ACCGACCATCGATGCTGTGCATTGAGGACCCCTTAC...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTTCTCCTCCAGCCGGTaGGGTTGTACTGATGATGTC +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCFSSSR*GCTDDV
Trigger: GACATCATCAGTACAACCGCACCGGCTGGAGGAGAA...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCCCACCTCCCTTCTCATaGCTGCTTCTTCAGGACAAG +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVPPPFS*LLLQDK
Trigger: CTTGTCCTGAAGAAGCAGCCATGAGAAGGGAGGTGG...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTCCTGAAGACAGCAGCTaGGGACTGGACAGGGACAGA +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSPEDSS*GLDRDR
Trigger: TCTGTCCCTGTCCAGTCCCCAGCTGCTGTCTTCAGG...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp ACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGCACAGCCGACCCGGGTGGAACTaGTGCTGCGGCGGCGAGCCG +
Preference number: 4 (lower is better)
Translates to: TQTSIQNFHCCMSIRWHSRPGWN*CCGGEP
Trigger: CGGCTCGCCGCCGCAGCACCAGTTCCACCCGGGTCG...GCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCCTTTGTCAAGAACTTTaGTGGAGCACGGCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCLCQEL*WSTAQP
Trigger: TGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAG...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGACCTGGCGAGCGGTaGCACAGCGTGGCTGAGCAC +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTRPGER*HSVAEH
Trigger: GTGCTCAGCCACGCTGTGTCACCGCTCGCCAGGTCT...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCATACCCCACTTTTCTTTaGTCCACCTCCGGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: LECLPESTASPRQQEADPYPTFL*STSGSR
Trigger: TCGACTACCGGAGGTGGATCAAAGAAAAGTGGGGTA...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTAGAAGCAGAAGAGCCTaGAGACAGCAGCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSRSRRA*RQQLGT
Trigger: AGTCCCCAGCTGCTGTCTTCAGGCTCTTCTGCTTCT...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACCCAGCGCCGGCGAGTTaGGGCAGAAGTAGGACGCGA +
Preference number: 4 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHPAPAS*GRSRTR
Trigger: TCGCGTCCTACTTCTGCCTCAACTCGCCGGCGCTGG...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCAAGCTGCCAAATATCTaGACATCAGCTGTGGGCCAG +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCKLPNI*TSAVGQ
Trigger: CTGGCCCACAGCTGATGTGCAGATATTTGGCAGCTT...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCTCATTCAGGTCCCTCTaGAGCAGGAACTGTTTCAGC +
Preference number: 4 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVSFRSL*SRNCFS
Trigger: GCTGAAACAGTTCCTGCTGCAGAGGGACCTGAATGA...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTCATTCAGGTCCCTCTaGAGCAGGAACTGTTTCAGC +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCSFRSL*SRNCFS
Trigger: GCTGAAACAGTTCCTGCTGCAGAGGGACCTGAATGA...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGGCATTGGCAAGGCTGTaGGCAGGCTGGCCATCAGGG +
Preference number: 4 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMALARL*AGWPSG
Trigger: CCCTGATGGCCAGCCTGCCCACAGCCTTGCCAATGC...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACCCCTTCTGCTCCGGCTaGATCCAGGCCACGCGCGGA +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHPFCSG*IQATRG
Trigger: TCCGCGCGTGGCCTGGATCCAGCCGGAGCAGAAGGG...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCGTCACTTCCAGAAAGTaGGGACACAGAAGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCVTSRK*GHRRSR
Trigger: TCTGCTTCTTCTGTGTCCTCACTTTCTGGAAGTGAC...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp ACAACTGCAAGCACTCCAGGACAACCGTGGTGCTTGAGAATCAGGGTCAGGCAAGGCTCAGCCACGTTGTaGTTCCGGAGGGCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: TTASTPGQPWCLRIRVRQGSATL*FRRACS
Trigger: GGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCC...TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGCTGGGCTCCCGGCTCTaGATCTGCTCCCCATTGCAC +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVLGSRL*ICSPLH
Trigger: GTGCAATGGGGAGCAGATGCAGAGCCGGGAGCCCAG...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACCAGTGGGTTGGGGGATaGCGAGGGAATGGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHQWVGG*RGNGWG
Trigger: TCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTG...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCGCCTCACAGCTCCACTaGCCACAGAGCTGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTASQLH*PQSCSR
Trigger: GCGGCTACAGCTCTGTGGGCAGTGGAGCTGTGAGGC...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp ACAACTGCAAGCACTCCAGGACAACCGTGGTGCTTGAGAATCAGGGTCAGGCAAGCTGGGGTTTGCTGCTaGGCATTGGCAAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: TTASTPGQPWCLRIRVRQAGVCC*ALARLW
Trigger: CCACAGCCTTGCCAATGCCCAGCAGCAAACCCCAGC...TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTTACCCCACTTTTCTTTaGTCCACCTCCGGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSYPTFL*STSGSR
Trigger: TCGACTACCGGAGGTGGATCAAAGAAAAGTGGGGTA...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTTCATTCAGGTCCCTCTaGAGCAGGAACTGTTTCAGC +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSSFRSL*SRNCFS
Trigger: GCTGAAACAGTTCCTGCTGCAGAGGGACCTGAATGA...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTCAGGCTGGGGTTTGCTaGTGGGCATTGGCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSQAGVC*WALARL
Trigger: CAGCCTTGCCAATGCCCAGCAGCAAACCCCAGCCTG...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGCGACACCAGCCTGTCTaGAAGGAACAGGGGCGACTC +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVRHQPV*KEQGRL
Trigger: GAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTCG...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACGCCTCACAGCTCCACTaGCCACAGAGCTGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHASQLH*PQSCSR
Trigger: GCGGCTACAGCTCTGTGGGCAGTGGAGCTGTGAGGC...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGCCTGCTTCACCTGCATaGCCCCATAGGAACTCCGTC +
Preference number: 4 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMPASPA*PHRNSV
Trigger: GACGGAGTTCCTATGGGGCCATGCAGGTGAAGCAGG...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACACAGCAGCTGGGGACTaGACAGGGACAGAGTCAGGC +
Preference number: 4 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHTAAGD*TGTESG
Trigger: GCCTGACTCTGTCCCTGTCCAGTCCCCAGCTGCTGT...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGCCTGAAGACAGCAGCTaGGGACTGGACAGGGACAGA +
Preference number: 4 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMPEDSS*GLDRDR
Trigger: TCTGTCCCTGTCCAGTCCCCAGCTGCTGTCTTCAGG...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTGCTGGGGTTTGCTGCTaGGCATTGGCAAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSAGVCC*ALARLW
Trigger: CCACAGCCTTGCCAATGCCCAGCAGCAAACCCCAGC...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGGGGATGCCGAGGGAATaGCTGGGGAAGTTACACTGT +
Preference number: 4 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTGMPRE*LGKLHC
Trigger: ACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCC...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGTGCCCGACTCGGCGTTaGACGACGACGAGGACGACG +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRCPTRR*TTTRTT
Trigger: CGTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCA...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp TGGACAACGGAGGTCCTTTTCAGATATTTGCTCTTAACAGAACGAGTGCATACCTTCCGCCGACCCGGGTaGAACTGGTGCTGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: WTTEVLFRYLLLTERVHTFRRPG*NWCCGG
Trigger: GCCGCCGCAGCACCAGTTCCACCCGGGTCGGCGGAA...GGTATGCACTCGTTCTGTTAAGAGCAAATATCTGAAAAGGACCTCCGTTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
3UTR CAA 72 bp CAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTaGGCGAGGTGTCCAATGTCACTCAGACATCCATTC +
Preference number: 4 (lower is better)
Translates to: QQEADPDTQSLS*ARCPMSLRHPF
Trigger: GAATGGATGTCTGAGTGACATTGGACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCCTTTGTCAAGAACTTTaGTGGAGCACGGCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: TCIVYLYASDARHQPLLGLCQEL*WSTAQP
Trigger: TGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAG...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAAACACTGGGTGTGGTaGAGGGCGGTGTGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTKHWVW*RAVCRS
Trigger: ACTCCGACACACCGCCCTGCACCACACCCAGTGTTT...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTCATGGACAGTTTCATaGCATTGTGCTGCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCSWTVS*HCAACD
Trigger: ATCACAAGCAGCACAATGGCATGAAACTGTCCATGA...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGCCTGCTTCACCTGCATaGCCCCATAGGAACTCCGTC +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVPASPA*PHRNSV
Trigger: GACGGAGTTCCTATGGGGCCATGCAGGTGAAGCAGG...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGGATAAACACTGGGTGTaGTGCAGGGCGGTGTGTCGG +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVDKHWV*CRAVCR
Trigger: CCGACACACCGCCCTGCACCACACCCAGTGTTTATC...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCGATAAACACTGGGTGTaGTGCAGGGCGGTGTGTCGG +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTDKHWV*CRAVCR
Trigger: CCGACACACCGCCCTGCACCACACCCAGTGTTTATC...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGGCATTGGCAAGGCTGTaGGCAGGCTGGCCATCAGGG +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRALARL*AGWPSG
Trigger: CCCTGATGGCCAGCCTGCCCACAGCCTTGCCAATGC...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTTAACTTCAGTCTCCTaGTCTGTGAGCTTTATGATG +
Preference number: 4 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCLTSVS*SVSFMM
Trigger: CATCATAAAGCTCACAGATCAGGAGACTGAAGTTAA...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGAGACCTGGCGAGCGGTaGCACAGCGTGGCTGAGCAC +
Preference number: 4 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWRPGER*HSVAEH
Trigger: GTGCTCAGCCACGCTGTGTCACCGCTCGCCAGGTCT...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp TGGACAACGGAGGTCCTTTTCAGATATTTGCTCTTAACAGAACGAGTGCATACCAGACCTGGCGAGCGGTaGCACAGCGTGGCTGAGCAC +
Preference number: 4 (lower is better)
Translates to: WTTEVLFRYLLLTERVHTRPGER*HSVAEH
Trigger: GTGCTCAGCCACGCTGTGTCACCGCTCGCCAGGTCT...GGTATGCACTCGTTCTGTTAAGAGCAAATATCTGAAAAGGACCTCCGTTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGCTCCCTTCTCATGGCTaGTTCTTCAGGACAAGGGGA +
Preference number: 4 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMLPSHG*FFRTRG
Trigger: TCCCCTTGTCCTGAAGAAGCAGCCATGAGAAGGGAG...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTATTCTTGATGAACTCTaGCGCCCGCACGCCAGTCTC +
Preference number: 4 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSILDEL*RPHASL
Trigger: GAGACTGGCGTGCGGGCGGCAGAGTTCATCAAGAAT...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp ACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGCACAGCCAGCAGGCTGGGGTTTaGTGCTGGGCATTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: TQTSIQNFHCCMSIRWHSQQAGV*CWALAR
Trigger: CCTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTG...GCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACGAGGTCTCCCAGATCTaGATCCACAGGGCATTGGCC +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHEVSQI*IHRALA
Trigger: GGCCAATGCCCTGTGGATGCAGATCTGGGAGACCTC...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACCCTGCTTCACCTGCATaGCCCCATAGGAACTCCGTC +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHPASPA*PHRNSV
Trigger: GACGGAGTTCCTATGGGGCCATGCAGGTGAAGCAGG...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACGACTCCGAGGGTTGGTaGAGGGATAGTAACCCTGGT +
Preference number: 4 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHDSEGW*RDSNPG
Trigger: ACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTC...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGGACTCCGAGGGTTGGTaGAGGGATAGTAACCCTGGT +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVDSEGW*RDSNPG
Trigger: ACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTC...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGGGGATGCCGAGGGAATaGCTGGGGAAGTTACACTGT +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVGMPRE*LGKLHC
Trigger: ACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCC...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTTGGTCATGGCTTTCATaGTCTCTTCTTTGGCGATAT +
Preference number: 4 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSWSWLS*SLLWRY
Trigger: ATATCGCCAAAGAAGAGATCATGAAAGCCATGACCA...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGTGGGTGCTTGCAGGCTaGACTGATAAACACTGGGTG +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVWVLAG*TDKHWV
Trigger: CACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCA...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGCTCCCTTCTCATGGCTaGTTCTTCAGGACAAGGGGA +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVLPSHG*FFRTRG
Trigger: TCCCCTTGTCCTGAAGAAGCAGCCATGAGAAGGGAG...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCGTAAGGGGTCCTCAATaGACAGCATCGATGGTCGGT +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTVRGPQ*TASMVG
Trigger: ACCGACCATCGATGCTGTGCATTGAGGACCCCTTAC...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGTCCCGGCTCTGCATCTaGTCCCCATTGCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRSRLCI*SPLHVV
Trigger: TACCACGTGCAATGGGGAGCAGATGCAGAGCCGGGA...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGTTCTCCTCCAGCCGGTaGGGTTGTACTGATGATGTC +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVFSSSR*GCTDDV
Trigger: GACATCATCAGTACAACCGCACCGGCTGGAGGAGAA...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCTTCTCCTCCAGCCGGTaGGGTTGTACTGATGATGTC +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTFSSSR*GCTDDV
Trigger: GACATCATCAGTACAACCGCACCGGCTGGAGGAGAA...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGCCACCTCCCTTCTCATaGCTGCTTCTTCAGGACAAG +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVPPPFS*LLLQDK
Trigger: CTTGTCCTGAAGAAGCAGCCATGAGAAGGGAGGTGG...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGTGTTGGGGTAAGACCTaGCGAGCGGTGACACAGCGT +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRCWGKT*RAVTQR
Trigger: ACGCTGTGTCACCGCTCGCCAGGTCTTACCCCAACA...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TCCACATGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGACAGCAGCTGGGGACTaGACAGGGACAGAGTCAGGC +
Preference number: 4 (lower is better)
Translates to: STCSKASQMSTRSCSVRWTAAGD*TGTESG
Trigger: GCCTGACTCTGTCCCTGTCCAGTCCCCAGCTGCTGT...CCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACATGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACGACTCCGAGGGTTGGTaGAGGGATAGTAACCCTGGT +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHDSEGW*RDSNPG
Trigger: ACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTC...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp ACAACTGCAAGCACTCCAGGACAACCGTGGTGCTTGAGAATCAGGGTCAGGCAAGTCACTTCCAGAAAGTaGGGACACAGAAGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: TTASTPGQPWCLRIRVRQVTSRK*GHRRSR
Trigger: TCTGCTTCTTCTGTGTCCTCACTTTCTGGAAGTGAC...TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp TCCACATGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGTCCCGGCTCTGCATCTaGTCCCCATTGCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: STCSKASQMSTRSCSVRWSRLCI*SPLHVV
Trigger: TACCACGTGCAATGGGGAGCAGATGCAGAGCCGGGA...CCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACATGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp TGGACAACGGAGGTCCTTTTCAGATATTTGCTCTTAACAGAACGAGTGCATACCCAGGCTGGGGTTTGCTaGTGGGCATTGGCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: WTTEVLFRYLLLTERVHTQAGVC*WALARL
Trigger: CAGCCTTGCCAATGCCCAGCAGCAAACCCCAGCCTG...GGTATGCACTCGTTCTGTTAAGAGCAAATATCTGAAAAGGACCTCCGTTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGCGACACCAGCCTGTCTaGAAGGAACAGGGGCGACTC +
Preference number: 4 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWRHQPV*KEQGRL
Trigger: GAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTCG...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AAGACAGTGGTTGTGGCAGAATACACTTGCATAGTATACCTGTATGCTTCTGACCAGTGGGTTGGGGGATaGCGAGGGAATGGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: KTVVVAEYTCIVYLYASDQWVGG*RGNGWG
Trigger: TCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTG...GTCAGAAGCATACAGGTATACTATGCAAGTGTATTCTGCCACAACCACTGTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTAATGCACAGCATCGATaGTCGGTACCCACTGGTCAT +
Preference number: 4 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSNAQHR*SVPTGH
Trigger: ATGACCAGTGGGTACCGACCATCGATGCTGTGCATT...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGAATGCACAGCATCGATaGTCGGTACCCACTGGTCAT +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVNAQHR*SVPTGH
Trigger: ATGACCAGTGGGTACCGACCATCGATGCTGTGCATT...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TCCACATGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGTGTTGGGGTAAGACCTaGCGAGCGGTGACACAGCGT +
Preference number: 4 (lower is better)
Translates to: STCSKASQMSTRSCSVRWCWGKT*RAVTQR
Trigger: ACGCTGTGTCACCGCTCGCCAGGTCTTACCCCAACA...CCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACATGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACCTTTGTCAAGAACTTTaGTGGAGCACGGCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHLCQEL*WSTAQP
Trigger: TGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAG...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp TGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCTGGGCTCAGCCACGTTGTaGTTCCGGAGGGCTTGTTCC +
Preference number: 4 (lower is better)
Translates to: WNQQNPFLHIPKSGCHCLGSATL*FRRACS
Trigger: GGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCC...CAGACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCATTCTTGGATGTAACTaGAGAAAGCTGATGGCCATT +
Preference number: 4 (lower is better)
Translates to: TCIVYLYASDARHQPLLGILGCN*RKLMAI
Trigger: AATGGCCATCAGCTTTCTGCAGTTACATCCAAGAAT...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGAAACACTGGGTGTGGTaGAGGGCGGTGTGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWKHWVW*RAVCRS
Trigger: ACTCCGACACACCGCCCTGCACCACACCCAGTGTTT...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGGATAAACACTGGGTGTaGTGCAGGGCGGTGTGTCGG +
Preference number: 4 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWDKHWV*CRAVCR
Trigger: CCGACACACCGCCCTGCACCACACCCAGTGTTTATC...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp AATGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCGCATTGGCAAGGCTGTaGGCAGGCTGGCCATCAGGG +
Preference number: 4 (lower is better)
Translates to: NGINKIPFSTFLNLGAIVALARL*AGWPSG
Trigger: CCCTGATGGCCAGCCTGCCCACAGCCTTGCCAATGC...GACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGTGGTCATGGCTTTCATaGTCTCTTCTTTGGCGATAT +
Preference number: 4 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMWSWLS*SLLWRY
Trigger: ATATCGCCAAAGAAGAGATCATGAAAGCCATGACCA...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGAAGCTGCCAAATATCTaGACATCAGCTGTGGGCCAG +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRKLPNI*TSAVGQ
Trigger: CTGGCCCACAGCTGATGTGCAGATATTTGGCAGCTT...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TCCACATGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGTCTGCACATCAGCTGTaGGCCAGAGGTCTTTCACCA +
Preference number: 4 (lower is better)
Translates to: STCSKASQMSTRSCSVRWSAHQL*ARGLSP
Trigger: TGGTGAAAGACCTCTGGCCCACAGCTGATGTGCAGA...CCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACATGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGAATGCACAGCATCGATaGTCGGTACCCACTGGTCAT +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRNAQHR*SVPTGH
Trigger: ATGACCAGTGGGTACCGACCATCGATGCTGTGCATT...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGTGGTCATGGCTTTCATaGTCTCTTCTTTGGCGATAT +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVWSWLS*SLLWRY
Trigger: ATATCGCCAAAGAAGAGATCATGAAAGCCATGACCA...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR TCA 90 bp ACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGCACAGCGTCACTTCCAGAAAGTaGGGACACAGAAGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: TQTSIQNFHCCMSIRWHSVTSRK*GHRRSR
Trigger: TCTGCTTCTTCTGTGTCCTCACTTTCTGGAAGTGAC...GCTGTGCCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGTGGGTGCTTGCAGGCTaGACTGATAAACACTGGGTG +
Preference number: 4 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWWVLAG*TDKHWV
Trigger: CACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCA...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp GATGACTCCAATCCTCATGAGCTGCAGACCCATGTGCTCCTCTGCTCTGGAATGCAGGACAAGGGGACATaGAGTTATAAAAGTCGATTA +
Preference number: 4 (lower is better)
Translates to: DDSNPHELQTHVLLCSGMQDKGT*SYKSRL
Trigger: TAATCGACTTTTATAACTTCATGTCCCCTTGTCCTG...CATTCCAGAGCAGAGGAGCACATGGGTCTGCAGCTCATGAGGATTGGAGTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AAGACAGTGGTTGTGGCAGAATACACTTGCATAGTATACCTGTATGCTTCTGACATTCTTGATGAACTCTaGCGCCCGCACGCCAGTCTC +
Preference number: 4 (lower is better)
Translates to: KTVVVAEYTCIVYLYASDILDEL*RPHASL
Trigger: GAGACTGGCGTGCGGGCGGCAGAGTTCATCAAGAAT...GTCAGAAGCATACAGGTATACTATGCAAGTGTATTCTGCCACAACCACTGTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp TGGACAACGGAGGTCCTTTTCAGATATTTGCTCTTAACAGAACGAGTGCATACCGTAAGGGGTCCTCAATaGACAGCATCGATGGTCGGT +
Preference number: 4 (lower is better)
Translates to: WTTEVLFRYLLLTERVHTVRGPQ*TASMVG
Trigger: ACCGACCATCGATGCTGTGCATTGAGGACCCCTTAC...GGTATGCACTCGTTCTGTTAAGAGCAAATATCTGAAAAGGACCTCCGTTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AATGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCTCCCGGCTCTGCATCTaGTCCCCATTGCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: NGINKIPFSTFLNLGAIVSRLCI*SPLHVV
Trigger: TACCACGTGCAATGGGGAGCAGATGCAGAGCCGGGA...GACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AACTATCAAGTTGACTTGGCTCCTTCACTGCATCTGACCAAAAGAAAAGACATACGACACCAGCCTGTCTaGAAGGAACAGGGGCGACTC +
Preference number: 4 (lower is better)
Translates to: NYQVDLAPSLHLTKRKDIRHQPV*KEQGRL
Trigger: GAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTCG...TATGTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACTCATGGACAGTTTCATaGCATTGTGCTGCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHSWTVS*HCAACD
Trigger: ATCACAAGCAGCACAATGGCATGAAACTGTCCATGA...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCTCATGGACAGTTTCATaGCATTGTGCTGCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTSWTVS*HCAACD
Trigger: ATCACAAGCAGCACAATGGCATGAAACTGTCCATGA...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp TGGACAACGGAGGTCCTTTTCAGATATTTGCTCTTAACAGAACGAGTGCATACCTCTGCACATCAGCTGTaGGCCAGAGGTCTTTCACCA +
Preference number: 4 (lower is better)
Translates to: WTTEVLFRYLLLTERVHTSAHQL*ARGLSP
Trigger: TGGTGAAAGACCTCTGGCCCACAGCTGATGTGCAGA...GGTATGCACTCGTTCTGTTAAGAGCAAATATCTGAAAAGGACCTCCGTTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGGTCTATGTCACTTGTTaGAAGATAGAGGCCTGTACT +
Preference number: 4 (lower is better)
Translates to: HKELFCKMDAATTQTCRVVYVTC*KIEACT
Trigger: AGTACAGGCCTCTATCTTCCAACAAGTGACATAGAC...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCGTCTATGTCACTTGTTaGAAGATAGAGGCCTGTACT +
Preference number: 4 (lower is better)
Translates to: KELFCKMDAATTQTCRVTVYVTC*KIEACT
Trigger: AGTACAGGCCTCTATCTTCCAACAAGTGACATAGAC...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACTGTGGGAGCCTTTCATaGACAGTTTCATGCCATTGT +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHCGSLS*TVSCHC
Trigger: ACAATGGCATGAAACTGTCCATGAAAGGCTCCCACA...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR GCA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTATTCTTGGATGTAACTaGAGAAAGCTGATGGCCATT +
Preference number: 4 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSILGCN*RKLMAI
Trigger: AATGGCCATCAGCTTTCTGCAGTTACATCCAAGAAT...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CCA 90 bp AAGACAGTGGTTGTGGCAGAATACACTTGCATAGTATACCTGTATGCTTCTGACTCTGCACATCAGCTGTaGGCCAGAGGTCTTTCACCA +
Preference number: 4 (lower is better)
Translates to: KTVVVAEYTCIVYLYASDSAHQL*ARGLSP
Trigger: TGGTGAAAGACCTCTGGCCCACAGCTGATGTGCAGA...GTCAGAAGCATACAGGTATACTATGCAAGTGTATTCTGCCACAACCACTGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp AAGACAGTGGTTGTGGCAGAATACACTTGCATAGTATACCTGTATGCTTCTGACTACCCCACTTTTCTTTaGTCCACCTCCGGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: KTVVVAEYTCIVYLYASDYPTFL*STSGSR
Trigger: TCGACTACCGGAGGTGGATCAAAGAAAAGTGGGGTA...GTCAGAAGCATACAGGTATACTATGCAAGTGTATTCTGCCACAACCACTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp AACTATCAAGTTGACTTGGCTCCTTCACTGCATCTGACCAAAAGAAAAGACATAAGAAGCAGAAGAGCCTaGAGACAGCAGCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: NYQVDLAPSLHLTKRKDIRSRRA*RQQLGT
Trigger: AGTCCCCAGCTGCTGTCTTCAGGCTCTTCTGCTTCT...TATGTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp AATGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCTGGGTGCTTGCAGGCTaGACTGATAAACACTGGGTG +
Preference number: 4 (lower is better)
Translates to: NGINKIPFSTFLNLGAIVWVLAG*TDKHWV
Trigger: CACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCA...GACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACATAGTAACCCTGGTCTaGTTGTTTGTTGTCATGATC +
Preference number: 4 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHIVTLV*LFVVMI
Trigger: GATCATGACAACAAACAACCAGACCAGGGTTACTAT...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CAA 72 bp AGGTACACACTGGCCTCACAGAACTATCAAGTTGACTaGGCTCCTTCACTGCATCTGACCAAAAGAAAAGAC +
Preference number: 4 (lower is better)
Translates to: RYTLASQNYQVD*APSLHLTKRKD
Trigger: GTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTTCTGTGAGGCCAGTGTGTACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR TCA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGTTAACTTCAGTCTCCTaGTCTGTGAGCTTTATGATG +
Preference number: 4 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRLTSVS*SVSFMM
Trigger: CATCATAAAGCTCACAGATCAGGAGACTGAAGTTAA...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
3UTR CAA 72 bp CCCCACGGTGGCTCCTTAATGCAGATACAGTCAATATaGCTAATGTGTAAATTAGTACAGGCTATGGACCAG +
Preference number: 4 (lower is better)
Translates to: PHGGSLMQIQSI*LMCKLVQAMDQ
Trigger: CTGGTCCATAGCCTGTACTAATTTACACATTAGCAATATTGACTGTATCTGCATTAAGGAGCCACCGTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp TGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCTGTGTGGGAGCCTTTCATaGACAGTTTCATGCCATTGT +
Preference number: 4 (lower is better)
Translates to: WNQQNPFLHIPKSGCHCLCGSLS*TVSCHC
Trigger: ACAATGGCATGAAACTGTCCATGAAAGGCTCCCACA...CAGACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR GCA 90 bp AATGTCACTCAGACATCCATTCAGAATTTCCACTGCTGCATGTCAATCAGGTGGATTCTTGGATGTAACTaGAGAAAGCTGATGGCCATT +
Preference number: 4 (lower is better)
Translates to: NVTQTSIQNFHCCMSIRWILGCN*RKLMAI
Trigger: AATGGCCATCAGCTTTCTGCAGTTACATCCAAGAAT...CCACCTGATTGACATGCAGCAGTGGAAATTCTGAATGGATGTCTGAGTGACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp TGGACAACGGAGGTCCTTTTCAGATATTTGCTCTTAACAGAACGAGTGCATACCATAGTAACCCTGGTCTaGTTGTTTGTTGTCATGATC +
Preference number: 4 (lower is better)
Translates to: WTTEVLFRYLLLTERVHTIVTLV*LFVVMI
Trigger: GATCATGACAACAAACAACCAGACCAGGGTTACTAT...GGTATGCACTCGTTCTGTTAAGAGCAAATATCTGAAAAGGACCTCCGTTGTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp AATGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCGTCTATGTCACTTGTTaGAAGATAGAGGCCTGTACT +
Preference number: 4 (lower is better)
Translates to: NGINKIPFSTFLNLGAIVVYVTC*KIEACT
Trigger: AGTACAGGCCTCTATCTTCCAACAAGTGACATAGAC...GACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CCA 90 bp AACTATCAAGTTGACTTGGCTCCTTCACTGCATCTGACCAAAAGAAAAGACATAATAGTAACCCTGGTCTaGTTGTTTGTTGTCATGATC +
Preference number: 4 (lower is better)
Translates to: NYQVDLAPSLHLTKRKDIIVTLV*LFVVMI
Trigger: GATCATGACAACAAACAACCAGACCAGGGTTACTAT...TATGTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS TCA 90 bp GCCCCGCCGCCCCGGGCGCGGCCGCCGTGTCCAGCGCCGGCGAGTTaGGGCAGAAGTAGGACGCGAAGCCGGAGCCGCCACGGCCCACGC +
Preference number: 5 (lower is better)
Translates to: APPPRARPPCPAPAS*GRSRTRSRSRHGPR
Trigger: GCGTGGGCCGTGGCGGCTCCGGCTTCGCGTCCTACTTCTGCCTCAACTCGCCGGCGCTGGACACGGCGGCCGCGCCCGGGGCGGCGGGGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS GCA 90 bp GTGCTGGCCTTGTTCTCGCGTTTCCGCCGACCCGGGTGGAACTGGTaGTGCGGCGGCGAGCCGGCGGGCGTGGAGCCGCGTGGGCCCGGG +
Preference number: 5 (lower is better)
Translates to: VLALFSRFRRPGWNW*CGGEPAGVEPRGPG
Trigger: CCCGGGCCCACGCGGCTCCACGCCCGCCGGCTCGCCGCCGCAGCACCAGTTCCACCCGGGTCGGCGGAAACGCGAGAACAAGGCCAGCAC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS GCA 90 bp GCGAGGTGCTGCTGGAGGACGACGACGAGCAGCCGGGACTCTCGGTaGCCGACTCGGCGTTGGACGACGACGAGGACGACGACGACGACA +
Preference number: 5 (lower is better)
Translates to: ARCCWRTTTSSRDSR*PTRRWTTTRTTTTT
Trigger: TGTCGTCGTCGTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCACCGAGAGTCCCGGCTGCTCGTCGTCGTCCTCCAGCAGCACCTCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 90 bp AGGACGACGACGAGCAGCCGGGACTCTCGGTGCCCGACTCGGCGTTaGACGACGACGAGGACGACGACGACGACAGCGACGGGGACTTGT +
Preference number: 5 (lower is better)
Translates to: RTTTSSRDSRCPTRR*TTTRTTTTTATGTC
Trigger: ACAAGTCCCCGTCGCTGTCGTCGTCGTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCACCGAGAGTCCCGGCTGCTCGTCGTCGTCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp CACGGCAGCAGGAGGCAGACCCAGACACACAGAGCTTGTCCTTGGCGAGGTGTCACTTGTGCAAGCGTCTaGCGCTGTCCGCCGCGGGCC +
Preference number: 5 (lower is better)
Translates to: HGSRRQTQTHRACPWRGVTCASV*RCPPRA
Trigger: GGCCCGCGGCGGACAGCGCAAGACGCTTGCACAAGT...GACACCTCGCCAAGGACAAGCTCTGTGTGTCTGGGTCTGCCTCCTGCTGCCGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp CTGGAATGCCTCCCAGAGTCAACAGCCTCACCACGGCAGCAGGAGGCAGACCCACACGGCTCAGCCACGTaGTGCTTCCGGAGGGCTTGT +
Preference number: 5 (lower is better)
Translates to: LECLPESTASPRQQEADPHGSAT*CFRRAC
Trigger: ACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTG...TGGGTCTGCCTCCTGCTGCCGTGGTGAGGCTGTTGACTCTGGGAGGCATTCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS GCA 90 bp GGGCATTGGCAAGGCTGTGGGCAGGCTGGCCATCAGGGTAGTGGGTaGTTGCAGGCTGAACTGATAAACACTGGGTGTGGTGCAGGGCGG +
Preference number: 5 (lower is better)
Translates to: GHWQGCGQAGHQGSG*LQAELINTGCGAGR
Trigger: CCGCCCTGCACCACACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCACTACCCTGATGGCCAGCCTGCCCACAGCCTTGCCAATGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 90 bp GATCAACGTTCTGGAAGCAGCAGGCTGGGGTTTGCTGCTGGGCATTaGCAAGGCTGTGGGCAGGCTGGCCATCAGGGTAGTGGGTGCTTG +
Preference number: 5 (lower is better)
Translates to: DQRSGSSRLGFAAGH*QGCGQAGHQGSGCL
Trigger: CAAGCACCCACTACCCTGATGGCCAGCCTGCCCACAGCCTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTGCTTCCAGAACGTTGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGGTGCCCGACTCGGCGTaGGACGACGACGAGGACGAC +
Preference number: 5 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTVPDSA*DDDEDD
Trigger: GTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCAC...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCGCAGCAGGCTGGGGTTaGCTGCTGGGCATTGGCAAG +
Preference number: 5 (lower is better)
Translates to: TCIVYLYASDARHQPLLGAAGWG*LLGIGK
Trigger: CTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTGC...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCGCTTTGTCAAGAACTTaGATGGAGCACGGCTCAGCC +
Preference number: 5 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCALSRT*MEHGSA
Trigger: GGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGC...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp ACTTGCATAGTATACCTGTATGCTTCTGACGCCAGGCACCAGCCGCTCCTGGGCGGACTAGACAGTGGGTaGGGGGATGCCGAGGGAATG +
Preference number: 5 (lower is better)
Translates to: TCIVYLYASDARHQPLLGGLDSG*GDAEGM
Trigger: CATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCC...GCCCAGGAGCGGCTGGTGCCTGGCGTCAGAAGCATACAGGTATACTATGCAAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp ACAACTGCAAGCACTCCAGGACAACCGTGGTGCTTGAGAATCAGGGTCAGGCAAGTTTGCTGCTGGGCATaGGCAAGGCTGTGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: TTASTPGQPWCLRIRVRQVCCWA*ARLWAG
Trigger: GCCTGCCCACAGCCTTGCCAATGCCCAGCAGCAAAC...TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGGGACTAGACAGTGGGTaGGGGGATGCCGAGGGAATG +
Preference number: 5 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTGLDSG*GDAEGM
Trigger: CATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCC...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS TCA 90 bp AGTGGGTTGGGGGATGCCGAGGGAATGGCTGGGGAAGTTACACTGTaGACAGCCTTCAAAGATGTGGTTCCGTCGACACCAGCCTGTCTG +
Preference number: 5 (lower is better)
Translates to: SGLGDAEGMAGEVTL*TAFKDVVPSTPACL
Trigger: CAGACAGGCTGGTGTCGACGGAACCACATCTTTGAAGGCTGTTCACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCCCCAACCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGCACGGCTCAGCCACGTaGTGCTTCCGGAGGGCTTGT +
Preference number: 5 (lower is better)
Translates to: HKELFCKMDAATTQTCRVHGSAT*CFRRAC
Trigger: ACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTG...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp AAACAAGACATGAGGGCAGTAAAACAGCAGCCTGCCCACTCCGTCAGAAGACACGTTTGCTGCTGGGCATaGGCAAGGCTGTGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: KQDMRAVKQQPAHSVRRHVCCWA*ARLWAG
Trigger: GCCTGCCCACAGCCTTGCCAATGCCCAGCAGCAAAC...GTGTCTTCTGACGGAGTGGGCAGGCTGCTGTTTTACTGCCCTCATGTCTTGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTGCAGCAGGCTGGGGTTaGCTGCTGGGCATTGGCAAG +
Preference number: 5 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSAAGWG*LLGIGK
Trigger: CTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTGC...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACTGCATCCACAGGGCATaGGCCGGCCCCTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHCIHRA*AGPFCS
Trigger: GGAGCAGAAGGGGCCGGCCAATGCCCTGTGGATGCA...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 90 bp GTCGACACCAGCCTGTCTGCAAGGAACAGGGGCGACTCCGAGGGTTaGTGGAGGGATAGTAACCCTGGTCTGGTTGTTTGTTGTCATGAT +
Preference number: 5 (lower is better)
Translates to: VDTSLSARNRGDSEG*WRDSNPGLVVCCHD
Trigger: ATCATGACAACAAACAACCAGACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 90 bp AGGGAATGGCTGGGGAAGTTACACTGTGAACAGCCTTCAAAGATGTaGTTCCGTCGACACCAGCCTGTCTGCAAGGAACAGGGGCGACTC +
Preference number: 5 (lower is better)
Translates to: REWLGKLHCEQPSKM*FRRHQPVCKEQGRL
Trigger: GAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTCGACGGAACCACATCTTTGAAGGCTGTTCACAGTGTAACTTCCCCAGCCATTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACCACGGCTCAGCCACGTaGTGCTTCCGGAGGGCTTGT +
Preference number: 5 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHHGSAT*CFRRAC
Trigger: ACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTG...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCTTTATCTTAATCCTGTaGTCAAGGTCTGGAGACGGG +
Preference number: 5 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCFILIL*SRSGDG
Trigger: CCCGTCTCCAGACCTTGACAACAGGATTAAGATAAA...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACGTTTGCTGCTGGGCATaGGCAAGGCTGTGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHVCCWA*ARLWAG
Trigger: GCCTGCCCACAGCCTTGCCAATGCCCAGCAGCAAAC...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp GAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCAGTGGACTAGACAGTGGGTaGGGGGATGCCGAGGGAATG +
Preference number: 5 (lower is better)
Translates to: ELFCKMDAATTQTCRVTSGLDSG*GDAEGM
Trigger: CATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCC...ACTGGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 90 bp GACACCAGCCTGTCTGCAAGGAACAGGGGCGACTCCGAGGGTTGGTaGAGGGATAGTAACCCTGGTCTGGTTGTTTGTTGTCATGATCAA +
Preference number: 5 (lower is better)
Translates to: DTSLSARNRGDSEGW*RDSNPGLVVCCHDQ
Trigger: TTGATCATGACAACAAACAACCAGACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 90 bp CAGATGAGGACTAGACAGTGGGTTGGGGGATGCCGAGGGAATGGCTaGGGAAGTTACACTGTGAACAGCCTTCAAAGATGTGGTTCCGTC +
Preference number: 5 (lower is better)
Translates to: QMRTRQWVGGCRGNG*GSYTVNSLQRCGSV
Trigger: GACGGAACCACATCTTTGAAGGCTGTTCACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCCTCATCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 90 bp GTAGCTTTGTCAAGAACTTTGATGGAGCACGGCTCAGCCACGTTGTaGTTCCGGAGGGCTTGTTCCAACAACTGTAATGGAGGGCGTTCC +
Preference number: 5 (lower is better)
Translates to: VALSRTLMEHGSATL*FRRACSNNCNGGRS
Trigger: GGAACGCCCTCCATTACAGTTGTTGGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 90 bp GTGCTGCTTGTGATACAGATGAGGACTAGACAGTGGGTTGGGGGATaGCGAGGGAATGGCTGGGGAAGTTACACTGTGAACAGCCTTCAA +
Preference number: 5 (lower is better)
Translates to: VLLVIQMRTRQWVGG*RGNGWGSYTVNSLQ
Trigger: TTGAAGGCTGTTCACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCCTCATCTGTATCACAAGCAGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp GTGGATGACAGAACTTTAAAACGCACATCTGCGGGTCACTCGAACGGCCCCACGCCAGGTCTATGTCACTaGTTGGAAGATAGAGGCCTG +
Preference number: 5 (lower is better)
Translates to: VDDRTLKRTSAGHSNGPTPGLCH*LEDRGL
Trigger: CAGGCCTCTATCTTCCAACAAGTGACATAGACCTGG...CGTGGGGCCGTTCGAGTGACCCGCAGATGTGCGTTTTAAAGTTCTGTCATCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp AACATGCAGAGTGACCAGTGCTGGGCTGCGCTTGGCAGACAGCGGTGGAGGTGCACTTCCTGGGTGACTTaGATGATTCTTCCTAAAGTA +
Preference number: 5 (lower is better)
Translates to: NMQSDQCWAALGRQRWRCTSWVT*MILPKV
Trigger: TACTTTAGGAAGAATCATCAAAGTCACCCAGGAAGT...GCACCTCCACCGCTGTCTGCCAAGCGCAGCCCAGCACTGGTCACTCTGCATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTGTAACCCTGGTCTGGTaGTTTGTTGTCATGATCAAC +
Preference number: 5 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSVTLVW*FVVMIN
Trigger: GTTGATCATGACAACAAACAACCAGACCAGGGTTAC...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CACAAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGGCTTTGTCAAGAACTTaGATGGAGCACGGCTCAGCC +
Preference number: 5 (lower is better)
Translates to: HKELFCKMDAATTQTCRVALSRT*MEHGSA
Trigger: GGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGC...CACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CAGATGAAGACTTCTAGGCAGGCAGACGCACATCCACATGTAGTAAGGCTTCACGCTTTGTCAAGAACTTaGATGGAGCACGGCTCAGCC +
Preference number: 5 (lower is better)
Translates to: QMKTSRQADAHPHVVRLHALSRT*MEHGSA
Trigger: GGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGC...GTGAAGCCTTACTACATGTGGATGTGCGTCTGCCTGCCTAGAAGTCTTCATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp CATCCAGTCCCTGACACTCCTAGGCCGCCCTGCTGGGCACAGATGAAGACTTCTACTTCCTGGGTGACTTaGATGATTCTTCCTAAAGTA +
Preference number: 5 (lower is better)
Translates to: HPVPDTPRPPCWAQMKTSTSWVT*MILPKV
Trigger: TACTTTAGGAAGAATCATCAAAGTCACCCAGGAAGT...AGAAGTCTTCATCTGTGCCCAGCAGGGCGGCCTAGGAGTGTCAGGGACTGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp ACAACTGCAAGCACTCCAGGACAACCGTGGTGCTTGAGAATCAGGGTCAGGCAAGTAACCCTGGTCTGGTaGTTTGTTGTCATGATCAAC +
Preference number: 5 (lower is better)
Translates to: TTASTPGQPWCLRIRVRQVTLVW*FVVMIN
Trigger: GTTGATCATGACAACAAACAACCAGACCAGGGTTAC...TTGCCTGACCCTGATTCTCAAGCACCACGGTTGTCCTGGAGTGCTTGCAGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGCCAGGTCTATGTCACTaGTTGGAAGATAGAGGCCTG +
Preference number: 5 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRPGLCH*LEDRGL
Trigger: CAGGCCTCTATCTTCCAACAAGTGACATAGACCTGG...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp AACTATCAAGTTGACTTGGCTCCTTCACTGCATCTGACCAAAAGAAAAGACATAGCAGCAGGCTGGGGTTaGCTGCTGGGCATTGGCAAG +
Preference number: 5 (lower is better)
Translates to: NYQVDLAPSLHLTKRKDIAAGWG*LLGIGK
Trigger: CTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTGC...TATGTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS TCA 90 bp TCACCACCTCCCTTCTCATGGCTGCTTCTTCAGGACAAGGGGACATaGAGTTATAAAAGTCGATTATCTCCTCATGAAGTCCCTGGATGC +
Preference number: 5 (lower is better)
Translates to: SPPPFSWLLLQDKGT*SYKSRLSPHEVPGC
Trigger: GCATCCAGGGACTTCATGAGGAGATAATCGACTTTTATAACTTCATGTCCCCTTGTCCTGAAGAAGCAGCCATGAGAAGGGAGGTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp AAGGAGCTGTTCTGTAAGATGGATGCGGCCACCACACAAACATGCAGAGTGACCACTTCCTGGGTGACTTaGATGATTCTTCCTAAAGTA +
Preference number: 5 (lower is better)
Translates to: KELFCKMDAATTQTCRVTTSWVT*MILPKV
Trigger: TACTTTAGGAAGAATCATCAAAGTCACCCAGGAAGT...GGTCACTCTGCATGTTTGTGTGGTGGCCGCATCCATCTTACAGAACAGCTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp TGTAGTAAGGCTTCACAGATGAGCACAAGGAGCTGTTCTGTAAGATGGATGCGGGTAACCCTGGTCTGGTaGTTTGTTGTCATGATCAAC +
Preference number: 5 (lower is better)
Translates to: CSKASQMSTRSCSVRWMRVTLVW*FVVMIN
Trigger: GTTGATCATGACAACAAACAACCAGACCAGGGTTAC...CCGCATCCATCTTACAGAACAGCTCCTTGTGCTCATCTGTGAAGCCTTACTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS-3UTR CAA 90 bp AATGGAATCAACAAAATCCCTTTCTCCACATTCCTAAATCTGGGTGCCATTGTCTTTATCTTAATCCTGTaGTCAAGGTCTGGAGACGGG +
Preference number: 5 (lower is better)
Translates to: NGINKIPFSTFLNLGAIVFILIL*SRSGDG
Trigger: CCCGTCTCCAGACCTTGACAACAGGATTAAGATAAA...GACAATGGCACCCAGATTTAGGAATGTGGAGAAAGGGATTTTGTTGATTCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS-3UTR CAA 90 bp AACTATCAAGTTGACTTGGCTCCTTCACTGCATCTGACCAAAAGAAAAGACATATTTATCTTAATCCTGTaGTCAAGGTCTGGAGACGGG +
Preference number: 5 (lower is better)
Translates to: NYQVDLAPSLHLTKRKDIFILIL*SRSGDG
Trigger: CCCGTCTCCAGACCTTGACAACAGGATTAAGATAAA...TATGTCTTTTCTTTTGGTCAGATGCAGTGAAGGAGCCAAGTCAACTTGATAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
CDS CCA 72 bp TGCGGCCGCTGCCGGCGCGGCCGAGCGAGGTGCTGCTaGAGGACGACGACGAGCAGCCGGGACTCTCGGTGC +
Preference number: 6 (lower is better)
Translates to: CGRCRRGRARCC*RTTTSSRDSRC
Trigger: GCACCGAGAGTCCCGGCTGCTCGTCGTCGTCCTCCAGCAGCACCTCGCTCGGCCGCGCCGGCAGCGGCCGCA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 72 bp CCGGCGGGCGTGGAGCCGCGTGGGCCCGGGTGTGCGTaGGCAGCACCGTCGGCGAAGCTGAAGAAGGTGCGG +
Preference number: 6 (lower is better)
Translates to: PAGVEPRGPGCA*AAPSAKLKKVR
Trigger: CCGCACCTTCTTCAGCTTCGCCGACGGTGCTGCCCACGCACACCCGGGCCCACGCGGCTCCACGCCCGCCGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 72 bp GCCTTGTTCTCGCGTTTCCGCCGACCCGGGTGGAACTaGTGCTGCGGCGGCGAGCCGGCGGGCGTGGAGCCG +
Preference number: 6 (lower is better)
Translates to: ALFSRFRRPGWN*CCGGEPAGVEP
Trigger: CGGCTCCACGCCCGCCGGCTCGCCGCCGCAGCACCAGTTCCACCCGGGTCGGCGGAAACGCGAGAACAAGGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 72 bp GTGCTGGCCTTGTTCTCGCGTTTCCGCCGACCCGGGTaGAACTGGTGCTGCGGCGGCGAGCCGGCGGGCGTG +
Preference number: 6 (lower is better)
Translates to: VLALFSRFRRPG*NWCCGGEPAGV
Trigger: CACGCCCGCCGGCTCGCCGCCGCAGCACCAGTTCCACCCGGGTCGGCGGAAACGCGAGAACAAGGCCAGCAC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CAA 90 bp GCGTTGGACGACGACGAGGACGACGACGACGACAGCGACGGGGACTaGTGCAAGCGTCTTGCGCTGTCCGCCGCGGGCCCTAGCGCGGTA +
Preference number: 6 (lower is better)
Translates to: ALDDDEDDDDDSDGD*CKRLALSAAGPSAV
Trigger: TACCGCGCTAGGGCCCGCGGCGGACAGCGCAAGACGCTTGCACAAGTCCCCGTCGCTGTCGTCGTCGTCGTCCTCGTCGTCGTCCAACGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CAA 90 bp GAGGACGACGACGAGCAGCCGGGACTCTCGGTGCCCGACTCGGCGTaGGACGACGACGAGGACGACGACGACGACAGCGACGGGGACTTG +
Preference number: 6 (lower is better)
Translates to: EDDDEQPGLSVPDSA*DDDEDDDDDSDGDL
Trigger: CAAGTCCCCGTCGCTGTCGTCGTCGTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCACCGAGAGTCCCGGCTGCTCGTCGTCGTCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 72 bp ACGAGCAGCCGGGACTCTCGGTGCCCGACTCGGCGTTaGACGACGACGAGGACGACGACGACGACAGCGACG +
Preference number: 6 (lower is better)
Translates to: TSSRDSRCPTRR*TTTRTTTTTAT
Trigger: CGTCGCTGTCGTCGTCGTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCACCGAGAGTCCCGGCTGCTCGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CAA 72 bp GACGAGCAGCCGGGACTCTCGGTGCCCGACTCGGCGTaGGACGACGACGAGGACGACGACGACGACAGCGAC +
Preference number: 6 (lower is better)
Translates to: DEQPGLSVPDSA*DDDEDDDDDSD
Trigger: GTCGCTGTCGTCGTCGTCGTCCTCGTCGTCGTCCAACGCCGAGTCGGGCACCGAGAGTCCCGGCTGCTCGTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS CCA 72 bp ACAGGGACAGAGTCAGGCGCTGGGTGTAAGGGGAGCTaGGCTCCCGGCTCTGCATCTGCTCCCCATTGCACG +
Preference number: 6 (lower is better)
Translates to: TGTESGAGCKGS*APGSASAPHCT
Trigger: CGTGCAATGGGGAGCAGATGCAGAGCCGGGAGCCCAGCTCCCCTTACACCCAGCGCCTGACTCTGTCCCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp TCCAGCCGGTGCGGTTGTACTGATGATGTCCTCGGTTaGCTACAGGAGGCCTCACAGCTCCACTGCCCACAG +
Preference number: 6 (lower is better)
Translates to: SSRCGCTDDVLG*LQEASQLHCPQ
Trigger: CTGTGGGCAGTGGAGCTGTGAGGCCTCCTGTAGGCAACCGAGGACATCATCAGTACAACCGCACCGGCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CAA 90 bp CATTGGCAAGGCTGTGGGCAGGCTGGCCATCAGGGTAGTGGGTGCTaGCAGGCTGAACTGATAAACACTGGGTGTGGTGCAGGGCGGTGT +
Preference number: 6 (lower is better)
Translates to: HWQGCGQAGHQGSGC*QAELINTGCGAGRC
Trigger: ACACCGCCCTGCACCACACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCACTACCCTGATGGCCAGCCTGCCCACAGCCTTGCCAATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp CCTTCAAAGATGTGGTTCCGTCGACACCAGCCTGTCTaGAAGGAACAGGGGCGACTCCGAGGGTTGGTGGAG +
Preference number: 6 (lower is better)
Translates to: PSKMWFRRHQPV*KEQGRLRGLVE
Trigger: CTCCACCAACCCTCGGAGTCGCCCCTGTTCCTTGCAGACAGGCTGGTGTCGACGGAACCACATCTTTGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CAA 72 bp GGCTGTGGGCAGGCTGGCCATCAGGGTAGTGGGTGCTaGCAGGCTGAACTGATAAACACTGGGTGTGGTGCA +
Preference number: 6 (lower is better)
Translates to: GCGQAGHQGSGC*QAELINTGCGA
Trigger: TGCACCACACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCACTACCCTGATGGCCAGCCTGCCCACAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp CAAGGCTGTGGGCAGGCTGGCCATCAGGGTAGTGGGTaGTTGCAGGCTGAACTGATAAACACTGGGTGTGGT +
Preference number: 6 (lower is better)
Translates to: QGCGQAGHQGSG*LQAELINTGCG
Trigger: ACCACACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCACTACCCTGATGGCCAGCCTGCCCACAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CAA 90 bp GGGGCGACTCCGAGGGTTGGTGGAGGGATAGTAACCCTGGTCTGGTaGTTTGTTGTCATGATCAACGTTCTGGAAGCAGCAGGCTGGGGT +
Preference number: 6 (lower is better)
Translates to: GATPRVGGGIVTLVW*FVVMINVLEAAGWG
Trigger: ACCCCAGCCTGCTGCTTCCAGAACGTTGATCATGACAACAAACAACCAGACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTCGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp TATAAAAGTCGATTATCTCCTCATGAAGTCCCTGGATaGCCGGGCTGTACGCGCGGCTCTTCCACGGCGTGC +
Preference number: 6 (lower is better)
Translates to: YKSRLSPHEVPG*PGCTRGSSTAC
Trigger: GCACGCCGTGGAAGAGCCGCGCGTACAGCCCGGGCATCCAGGGACTTCATGAGGAGATAATCGACTTTTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5
CDS TCA 72 bp TTCAGAATCCCTGTTGGGGTAAGACCTGGCGAGCGGTaGCACAGCGTGGCTGAGCACAATGTAAGCGTAGTC +
Preference number: 6 (lower is better)
Translates to: FRIPVGVRPGER*HSVAEHNVSVV
Trigger: GACTACGCTTACATTGTGCTCAGCCACGCTGTGTCACCGCTCGCCAGGTCTTACCCCAACAGGGATTCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS TCA 72 bp GGGGATGCCGAGGGAATGGCTGGGGAAGTTACACTGTaGACAGCCTTCAAAGATGTGGTTCCGTCGACACCA +
Preference number: 6 (lower is better)
Translates to: GDAEGMAGEVTL*TAFKDVVPSTP
Trigger: TGGTGTCGACGGAACCACATCTTTGAAGGCTGTTCACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 72 bp TTTGTTGTCATGATCAACGTTCTGGAAGCAGCAGGCTaGGGTTTGCTGCTGGGCATTGGCAAGGCTGTGGGC +
Preference number: 6 (lower is better)
Translates to: FVVMINVLEAAG*GLLLGIGKAVG
Trigger: GCCCACAGCCTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTGCTTCCAGAACGTTGATCATGACAACAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp GTCCAACATCATTTCCAGGCAGTAAGGGGTCCTCAATaGACAGCATCGATGGTCGGTACCCACTGGTCATGG +
Preference number: 6 (lower is better)
Translates to: VQHHFQAVRGPQ*TASMVGTHWSW
Trigger: CCATGACCAGTGGGTACCGACCATCGATGCTGTGCATTGAGGACCCCTTACTGCCTGGAAATGATGTTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp GTGATACAGATGAGGACTAGACAGTGGGTTGGGGGATaGCGAGGGAATGGCTGGGGAAGTTACACTGTGAAC +
Preference number: 6 (lower is better)
Translates to: VIQMRTRQWVGG*RGNGWGSYTVN
Trigger: GTTCACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCCTCATCTGTATCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 72 bp ATTGTGCTGCTTGTGATACAGATGAGGACTAGACAGTaGGTTGGGGGATGCCGAGGGAATGGCTGGGGAAGT +
Preference number: 6 (lower is better)
Translates to: IVLLVIQMRTRQ*VGGCRGNGWGS
Trigger: ACTTCCCCAGCCATTCCCTCGGCATCCCCCAACCCACTGTCTAGTCCTCATCTGTATCACAAGCAGCACAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 72 bp CTGGGGAAGTTACACTGTGAACAGCCTTCAAAGATGTaGTTCCGTCGACACCAGCCTGTCTGCAAGGAACAG +
Preference number: 6 (lower is better)
Translates to: LGKLHCEQPSKM*FRRHQPVCKEQ
Trigger: CTGTTCCTTGCAGACAGGCTGGTGTCGACGGAACCACATCTTTGAAGGCTGTTCACAGTGTAACTTCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 72 bp AGCCGCCACCCTGAGTGTGGTTGTGGGAGCCTTTCATaGACAGTTTCATGCCATTGTGCTGCTTGTGATACA +
Preference number: 6 (lower is better)
Translates to: SRHPECGCGSLS*TVSCHCAACDT
Trigger: TGTATCACAAGCAGCACAATGGCATGAAACTGTCCATGAAAGGCTCCCACAACCACACTCAGGGTGGCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CAA 90 bp ACTGTAGCTTTGTCAAGAACTTTGATGGAGCACGGCTCAGCCACGTaGTGCTTCCGGAGGGCTTGTTCCAACAACTGTAATGGAGGGCGT +
Preference number: 6 (lower is better)
Translates to: TVALSRTLMEHGSAT*CFRRACSNNCNGGR
Trigger: ACGCCCTCCATTACAGTTGTTGGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGCTACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp TCAAGAACTTTGATGGAGCACGGCTCAGCCACGTTGTaGTTCCGGAGGGCTTGTTCCAACAACTGTAATGGA +
Preference number: 6 (lower is better)
Translates to: SRTLMEHGSATL*FRRACSNNCNG
Trigger: TCCATTACAGTTGTTGGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTGCTCCATCAAAGTTCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CAA 72 bp AGCTTTATGATGGGCACTGTAGCTTTGTCAAGAACTTaGATGGAGCACGGCTCAGCCACGTTGTGCTTCCGG +
Preference number: 6 (lower is better)
Translates to: SFMMGTVALSRT*MEHGSATLCFR
Trigger: CCGGAAGCACAACGTGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGCTACAGTGCCCATCATAAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CCA 72 bp ACTCCGAGGGTTGGTGGAGGGATAGTAACCCTGGTCTaGTTGTTTGTTGTCATGATCAACGTTCTGGAAGCA +
Preference number: 6 (lower is better)
Translates to: TPRVGGGIVTLV*LFVVMINVLEA
Trigger: TGCTTCCAGAACGTTGATCATGACAACAAACAACCAGACCAGGGTTACTATCCCTCCACCAACCCTCGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS CAA 72 bp TTGTCAAGAACTTTGATGGAGCACGGCTCAGCCACGTaGTGCTTCCGGAGGGCTTGTTCCAACAACTGTAAT +
Preference number: 6 (lower is better)
Translates to: LSRTLMEHGSAT*CFRRACSNNCN
Trigger: ATTACAGTTGTTGGAACAAGCCCTCCGGAAGCACAACGTGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS GCA 72 bp CTGATCCCGCCTGTGAAGACCTCATTCAGGTCCCTCTaGAGCAGGAACTGTTTCAGCACTAAAATCAAGTAT +
Preference number: 6 (lower is better)
Translates to: LIPPVKTSFRSL*SRNCFSTKIKY
Trigger: ATACTTGATTTTAGTGCTGAAACAGTTCCTGCTGCAGAGGGACCTGAATGAGGTCTTCACAGGCGGGATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044081.9
ENSMUST00000198607.5
ENSMUST00000223344.3
CDS TCA 72 bp CCCTTCTCATGGCTGCTTCTTCAGGACAAGGGGACATaGAGTTATAAAAGTCGATTATCTCCTCATGAAGTC +
Preference number: 6 (lower is better)
Translates to: PFSWLLLQDKGT*SYKSRLSPHEV
Trigger: GACTTCATGAGGAGATAATCGACTTTTATAACTTCATGTCCCCTTGTCCTGAAGAAGCAGCCATGAGAAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198607.5