RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TENT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042167

Ensembl transcript IDs: ENSMUST00000048702.7, ENSMUST00000224464.2, ENSMUST00000224545.2, ENSMUST00000225868.2, ENSMUST00000226081.2

Found 166 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AACACAAAATCTAAAGCAACCTCCAGAGTCTATCAAAGTCAGTTGTaGAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAG +
Preference number: 1 (lower is better)
Translates to: NTKSKATSRVYQSQL*SAINSTATPQTVSQ
Trigger: CTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTTTGATAGACTCTGGAGGTTGCTTTAGATTTTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR TCA 90 bp GCATTTAAGAATAACAAAGAAGCCACTTCCCAGGCAGTGTCACTGTaGCGCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTTTGAA +
Preference number: 1 (lower is better)
Translates to: AFKNNKEATSQAVSL*RWFSCLATRTFHFE
Trigger: TTCAAAGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTGACACTGCCTGGGAAGTGGCTTCTTTGTTATTCTTAAATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
3UTR CCA 90 bp ACTAGGATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTaGTACAAGTACTTGAGAATATATCAAAACCTTATTAGTTCAGGT +
Preference number: 1 (lower is better)
Translates to: TRIFAKSHVVLRISM*YKYLRIYQNLISSG
Trigger: ACCTGAACTAATAAGGTTTTGATATATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATCCTAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR CAA 90 bp CACTGTGACGCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTTaGAAGGGTGCTGTGGCTACCTGTTCAAGTCTGGTGCTGGCTGCT +
Preference number: 2 (lower is better)
Translates to: HCDAGLAVLLLGHFT*KGAVATCSSLVLAA
Trigger: AGCAGCCAGCACCAGACTTGAACAGGTAGCCACAGCACCCTTCAAAGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
3UTR-3UTR TCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCATCCCAGGGAGTCGAGTaGAGACTGAAGGCAACTGTC +
Preference number: 2 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSSQGVE*RLKATV
Trigger: GACAGTTGCCTTCAGTCTTCACTCGACTCCCTGGGA...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR-3UTR TCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAATCCCAGGGAGTCGAGTaGAGACTGAAGGCAACTGTC +
Preference number: 2 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKSQGVE*RLKATV
Trigger: GACAGTTGCCTTCAGTCTTCACTCGACTCCCTGGGA...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR-3UTR GCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAATGCACAGGTTCACTGTaGTATCAGAAAGCAGAAGAA +
Preference number: 2 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKCTGSL*YQKAEE
Trigger: TTCTTCTGCTTTCTGATAGCACAGTGAACCTGTGCA...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR-3UTR GCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAAAGTCAGTTGTGAAGTaGTATAAACAGTACAGCCAC +
Preference number: 2 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKKSVVK*YKQYSH
Trigger: GTGGCTGTACTGTTTATAGCACTTCACAACTGACTT...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR-3UTR CCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCACTCAGGATAAGTATGTaGTACAAGTACTTGAGAATA +
Preference number: 2 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSLRISM*YKYLRI
Trigger: TATTCTCAAGTACTTGTACCACATACTTATCCTGAG...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR-3UTR CCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCACTCAGGATAAGTATGTaGTACAAGTACTTGAGAATA +
Preference number: 2 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSLRISM*YKYLRI
Trigger: TATTCTCAAGTACTTGTACCACATACTTATCCTGAG...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR TCA 72 bp CCCCTCAGACAGTGTCCCAGGGAGTCGAGTGAAGACTaGAGGCAACTGTCCAGTATTTCAAGACGCCACAGT +
Preference number: 3 (lower is better)
Translates to: PLRQCPRESSED*RQLSSISRRHS
Trigger: ACTGTGGCGTCTTGAAATACTGGACAGTTGCCTTCAGTCTTCACTCGACTCCCTGGGACACTGTCTGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR GCA 72 bp AGCTGTCTTGCTACTAGGACATTTCACTTTGAAGGGTaGTGTGGCTACCTGTTCAAGTCTGGTGCTGGCTGC +
Preference number: 3 (lower is better)
Translates to: SCLATRTFHFEG*CGYLFKSGAGC
Trigger: GCAGCCAGCACCAGACTTGAACAGGTAGCCACAGCACCCTTCAAAGTGAAATGTCCTAGTAGCAAGACAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
3UTR GCA 72 bp AGCAACCTCCAGAGTCTATCAAAGTCAGTTGTGAAGTaGTATAAACAGTACAGCCACCCCTCAGACAGTGTC +
Preference number: 3 (lower is better)
Translates to: SNLQSLSKSVVK*YKQYSHPSDSV
Trigger: GACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTTTGATAGACTCTGGAGGTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR TCA 72 bp AATAACAAAGAAGCCACTTCCCAGGCAGTGTCACTGTaGCGCTGGTTTAGCTGTCTTGCTACTAGGACATTT +
Preference number: 3 (lower is better)
Translates to: NNKEATSQAVSL*RWFSCLATRTF
Trigger: AAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTGACACTGCCTGGGAAGTGGCTTCTTTGTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
3UTR TCA 72 bp TCTAAAGCAACCTCCAGAGTCTATCAAAGTCAGTTGTaGAGTGCTATAAACAGTACAGCCACCCCTCAGACA +
Preference number: 3 (lower is better)
Translates to: SKATSRVYQSQL*SAINSTATPQT
Trigger: TGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTTTGATAGACTCTGGAGGTTGCTTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR-3UTR CAA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAGACTTGAATCTTTACTaGACTAGAACTGAGCTAGAC +
Preference number: 3 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSDLNLY*TRTELD
Trigger: GTCTAGCTCAGTTCTAGTCAAGTAAAGATTCAAGTC...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGCATCAGGCCTTGGGATaGCTTTGGCTTCACGAACTG +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVHQALG*LWLHEL
Trigger: CAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATG...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp AGCGTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCGTTGGTGGGTTGGAGTaGAGGGTGGACGACCCAAAA +
Preference number: 4 (lower is better)
Translates to: SVVVHICKSQHSDEGRRIVGGLE*RVDDPK
Trigger: TTTTGGGTCGTCCACCCTTCACTCCAACCCACCAAC...GATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCACAACTACGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR TCA 90 bp GTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCTGGCTCTTGGTGGGGTaGATGGAAACGCTGCCGTTT +
Preference number: 4 (lower is better)
Translates to: VHICKSQHSDEGRRIKEFWLLVG*METLPF
Trigger: AAACGGCAGCGTTTCCATTCACCCCACCAAGAGCCA...GAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR TCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGTGGCCTCAGGCAGTGTaGTTTCTCGAGGTTCTAACA +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVWPQAV*FLEVLT
Trigger: TGTTAGAACCTCGAGAAATCACACTGCCTGAGGCCA...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CCACTTCCCAGGCAGTGTCACTGTGACGCTGGTTTAGCTGTCTTGCTACTAGGAGTAACTGGAGCTTCCTaGTGTTCCCCAGAAATGGTG +
Preference number: 4 (lower is better)
Translates to: PLPRQCHCDAGLAVLLLGVTGAS*CSPEMV
Trigger: CACCATTTCTGGGGAACAGCAGGAAGCTCCAGTTAC...TCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTGACACTGCCTGGGAAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR TCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCATGGCTCTTGGTGGGGTaGATGGAAACGCTGCCGTTT +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPWLLVG*METLPF
Trigger: AAACGGCAGCGTTTCCATTCACCCCACCAAGAGCCA...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGGGTGAATGGAAACGCTaGCGTTTACCATCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVGEWKR*RLPSRG
Trigger: TCCTCTTGATGGTAAACGGCAGCGTTTCCATTCACC...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGGCCTTGGGATGGCTTTaGCTTCACGAACTGAAATCA +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVALGWL*LHELKS
Trigger: TGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGC...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp AGCGTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCTGGCCTCAGGCAGTGTaGTTTCTCGAGGTTCTAACA +
Preference number: 4 (lower is better)
Translates to: SVVVHICKSQHSDEGRRIWPQAV*FLEVLT
Trigger: TGTTAGAACCTCGAGAAATCACACTGCCTGAGGCCA...GATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCACAACTACGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR TCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCACACGACTGGCATCATTaGTGTCATGGTGACTTGCCC +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPHDWHH*CHGDLP
Trigger: GGGCAAGTCACCATGACATCAATGATGCCAGTCGTG...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GACGCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTTTGAAGGGTGCTGTGCACGACTGGCATCATTaGTGTCATGGTGACTTGCCC +
Preference number: 4 (lower is better)
Translates to: DAGLAVLLLGHFTLKGAVHDWHH*CHGDLP
Trigger: GGGCAAGTCACCATGACATCAATGATGCCAGTCGTG...CACAGCACCCTTCAAAGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR GCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGCACAATTGGCACTTTTaGTCGAATCAGCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVHNWHF*SNQLRS
Trigger: AGACCTCAGCTGATTCGAGCAAAAGTGCCAATTGTG...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGGATGTCATGGTGACTTaGCCACTTCTTAATCACCAG +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVDVMVT*PLLNHQ
Trigger: CTGGTGATTAAGAAGTGGGCAAGTCACCATGACATC...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACATGCTGTTGGTGGGTTaGAGTGAAGGGTGGACGACC +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHMLLVG*SEGWTT
Trigger: GGTCGTCCACCCTTCACTCCAACCCACCAACAGCAT...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AGGAGGATCAAGGAGTTCAAGGCCATCCTTTGCTTCATAGGGAATTCCAGAACAATGCTGTTGGTGGGTTaGAGTGAAGGGTGGACGACC +
Preference number: 4 (lower is better)
Translates to: RRIKEFKAILCFIGNSRTMLLVG*SEGWTT
Trigger: GGTCGTCCACCCTTCACTCCAACCCACCAACAGCAT...TGTTCTGGAATTCCCTATGAAGCAAAGGATGGCCTTGAACTCCTTGATCCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp AGCGTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCTCTTGGTGGGGTGAATaGAAACGCTGCCGTTTACCA +
Preference number: 4 (lower is better)
Translates to: SVVVHICKSQHSDEGRRISWWGE*KRCRLP
Trigger: TGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGA...GATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCACAACTACGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp GTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCATAGTTGGCTCTTGGTaGGGTGAATGGAAACGCTGC +
Preference number: 4 (lower is better)
Translates to: VHICKSQHSDEGRRIKEFIVGSW*GEWKRC
Trigger: GCAGCGTTTCCATTCACCCCACCAAGAGCCAACTAT...GAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR GCA 90 bp ATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCAAGGCCGGTGAATGGAAACGCTaGCGTTTACCATCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: ICKSQHSDEGRRIKEFKAGEWKR*RLPSRG
Trigger: TCCTCTTGATGGTAAACGGCAGCGTTTCCATTCACC...GGCCTTGAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR GCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAAGCTGGATCTCTCTCTaGAGCTGTGCTCTACAGAGT +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPSWISL*SCALQS
Trigger: ACTCTGTAGAGCACAGCTGCAGAGAGAGATCCAGCT...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCATCTTGGTGGGGTGAATaGAAACGCTGCCGTTTACCA +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPSWWGE*KRCRLP
Trigger: TGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGA...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCACATATCATCAGGCCTTaGGATGGCTTTGGCTTCACG +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPHIIRP*DGFGFT
Trigger: CGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATG...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
3UTR CAA 72 bp GCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTTaGAAGGGTGCTGTGGCTACCTGTTCAAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: AGLAVLLLGHFT*KGAVATCSSLV
Trigger: CACCAGACTTGAACAGGTAGCCACAGCACCCTTCAAAGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR TCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGCGAACTGAAATCATCTaGGTGTTCCAGTCAAATTCT +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVRTEII*VFQSNS
Trigger: AGAATTTGACTGGAACACTCAGATGATTTCAGTTCG...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGAGTCTAGTACAGAAGTaGTTATGGACTAAGGTGAGT +
Preference number: 4 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVSLVQK*LWTKVS
Trigger: ACTCACCTTAGTCCATAAGCACTTCTGTACTAGACT...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp TGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCAAGGCCATCTTATTATGCTGTTGGTaGGTTGGAGTGAAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: CKSQHSDEGRRIKEFKAILLCCW*VGVKGG
Trigger: TCCACCCTTCACTCCAACCCACCAACAGCATAATAA...GATGGCCTTGAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACATAGTTGGCTCTTGGTaGGGTGAATGGAAACGCTGC +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHIVGSW*GEWKRC
Trigger: GCAGCGTTTCCATTCACCCCACCAAGAGCCAACTAT...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp TGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCAAGGCCATCGAAACAACGGTGGCATaGAATATCTTCTGTCACCTG +
Preference number: 4 (lower is better)
Translates to: CKSQHSDEGRRIKEFKAIETTVA*NIFCHL
Trigger: CAGGTGACAGAAGATATTCCATGCCACCGTTGTTTC...GATGGCCTTGAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAAGGAGGGACATTACATaGGGCATGATGAACAAGGTG +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPRRDIT*GMMNKV
Trigger: CACCTTGTTCATCATGCCCCATGTAATGTCCCTCCT...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACCATATCATCAGGCCTTaGGATGGCTTTGGCTTCACG +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHHIIRP*DGFGFT
Trigger: CGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATG...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCACTCTCTCTGCAGCTGTaGTCTACAGAGTTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPLSLQL*STEFFL
Trigger: AAGAAAGAACTCTGTAGAGCACAGCTGCAGAGAGAG...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp AGGCAGTGTCACTGTGACGCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTGATGTCATGGTGACTTaGCCACTTCTTAATCACCAG +
Preference number: 4 (lower is better)
Translates to: RQCHCDAGLAVLLLGHFTDVMVT*PLLNHQ
Trigger: CTGGTGATTAAGAAGTGGGCAAGTCACCATGACATC...AGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTGACACTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR CCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAATTATAGTTGGCTCTTaGTGGGGTGAATGGAAACGC +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPIIVGS*WGEWKR
Trigger: GCGTTTCCATTCACCCCACCAAGAGCCAACTATAAT...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGAAACAACGGTGGCATaGAATATCTTCTGTCACCTG +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPETTVA*NIFCHL
Trigger: CAGGTGACAGAAGATATTCCATGCCACCGTTGTTTC...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACGCCTTGGGATGGCTTTaGCTTCACGAACTGAAATCA +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHALGWL*LHELKS
Trigger: TGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGC...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGTTGGTGGGTTGGAGTaGAGGGTGGACGACCCAAAA +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLVGGLE*RVDDPK
Trigger: TTTTGGGTCGTCCACCCTTCACTCCAACCCACCAAC...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp AGCGTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCGAGGTGGAACACATCTaGCTATATCTGGTATATAGT +
Preference number: 4 (lower is better)
Translates to: SVVVHICKSQHSDEGRRIEVEHI*LYLVYS
Trigger: ACTATATACCAGATATAGTCAGATGTGTTCCACCTC...GATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCACAACTACGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR GCA 90 bp GTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGCAAAGAAGTTATTATaGTGTTGGTGGGTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: VVVHICKSQHSDEGRRIKAKKLL*CWWVGV
Trigger: CACTCCAACCCACCAACAGCATAATAACTTCTTTGC...CTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCACAACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR GCA 90 bp AGGCAGTGTCACTGTGACGCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTATACAAGACTATAGCTaGTTAATGTGCCACGACTGG +
Preference number: 4 (lower is better)
Translates to: RQCHCDAGLAVLLLGHFTIQDYS*LMCHDW
Trigger: CCAGTCGTGGCACATTAAGCAGCTATAGTCTTGTAT...AGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTGACACTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR GCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACAACTTCTGCTTCTCATaGACAGCTCTGGCGGTATTA +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHNFCFS*TALAVL
Trigger: TAATACCGCCAGAGCTGTGCATGAGAAGCAGAAGTT...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTATGCTGTTGGTGGGTTaGAGTGAAGGGTGGACGACC +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLMLLVG*SEGWTT
Trigger: GGTCGTCCACCCTTCACTCCAACCCACCAACAGCAT...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAAAGTTATTATGCTGTTaGTGGGTTGGAGTGAAGGGT +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPKLLCC*WVGVKG
Trigger: ACCCTTCACTCCAACCCACCAACAGCATAATAACTT...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GTAGTTGTGCACATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGAAGTTATTATGCTGTTaGTGGGTTGGAGTGAAGGGT +
Preference number: 4 (lower is better)
Translates to: VVVHICKSQHSDEGRRIKKLLCC*WVGVKG
Trigger: ACCCTTCACTCCAACCCACCAACAGCATAATAACTT...CTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGATGTGCACAACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp AGGAGGATCAAGGAGTTCAAGGCCATCCTTTGCTTCATAGGGAATTCCAGAACAATTATAGTTGGCTCTTaGTGGGGTGAATGGAAACGC +
Preference number: 4 (lower is better)
Translates to: RRIKEFKAILCFIGNSRTIIVGS*WGEWKR
Trigger: GCGTTTCCATTCACCCCACCAAGAGCCAACTATAAT...TGTTCTGGAATTCCCTATGAAGCAAAGGATGGCCTTGAACTCCTTGATCCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp ATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCAAGGCCGATAAAGGCACTAGCTaGTTGATTATAGTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: ICKSQHSDEGRRIKEFKADKGTS*LIIVGS
Trigger: AGAGCCAACTATAATCAACCAGCTAGTGCCTTTATC...GGCCTTGAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACAAAAAGTCTGCTTTGTaGGAAGAGCAGCTGGATCTC +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHKKSAL*EEQLDL
Trigger: GAGATCCAGCTGCTCTTCCCACAAAGCAGACTTTTT...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CACTGTGACGCTGGTTTAGCTGTCTTGCTACTAGGACATTTCACTTTGAAGGGTTTAAAGTCATGTAACTaGAGCTTCCTGCTGTTCCCC +
Preference number: 4 (lower is better)
Translates to: HCDAGLAVLLLGHFTLKGLKSCN*SFLLFP
Trigger: GGGGAACAGCAGGAAGCTCCAGTTACATGACTTTAA...ACCCTTCAAAGTGAAATGTCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR TCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGAGGTGGAACACATCTaGCTATATCTGGTATATAGT +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPEVEHI*LYLVYS
Trigger: ACTATATACCAGATATAGTCAGATGTGTTCCACCTC...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp TGTCTTGCTACTAGGACATTTCACTTTGAAGGGTGCTGTGGCTACCTGTTCAAGTCATTGATGTCATGGTaGCTTGCCCACTTCTTAATC +
Preference number: 4 (lower is better)
Translates to: CLATRTFHFEGCCGYLFKSLMSW*LAHFLI
Trigger: GATTAAGAAGTGGGCAAGTCACCATGACATCAATGA...CTTGAACAGGTAGCCACAGCACCCTTCAAAGTGAAATGTCCTAGTAGCAAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR GCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACCTTCTTCAAGTCACTTaGTTGCTGCTGACAAGTTTC +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHLLQVT*LLLTSF
Trigger: GAAACTTGTCAGCAGCAAGCAAGTGACTTGAAGAAG...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAATCATATCAAACTTCTaGTTCTCATGCACAGCTCTG +
Preference number: 4 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPIISNF*FSCTAL
Trigger: CAGAGCTGTGCATGAGAAGCAGAAGTTTGATATGAT...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACAAGTTATTATGCTGTTaGTGGGTTGGAGTGAAGGGT +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHKLLCC*WVGVKG
Trigger: ACCCTTCACTCCAACCCACCAACAGCATAATAACTT...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATATGTGGGAAGAGCAGCTaGATCTCTCTCTGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: AKSHVVLRISMWYKYLRICGKSS*ISLCSC
Trigger: ACAGCTGCAGAGAGAGATCCAGCTGCTCTTCCCACA...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATACATCAGGCCTTGGGATaGCTTTGGCTTCACGAACTG +
Preference number: 4 (lower is better)
Translates to: AKSHVVLRISMWYKYLRIHQALG*LWLHEL
Trigger: CAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATG...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAGTTGGTGGGTTGGAGTaGAGGGTGGACGACCCAAAA +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKVGGLE*RVDDPK
Trigger: TTTTGGGTCGTCCACCCTTCACTCCAACCCACCAAC...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCACACGACTGGCATCATTaGTGTCATGGTGACTTGCCC +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSHDWHH*CHGDLP
Trigger: GGGCAAGTCACCATGACATCAATGATGCCAGTCGTG...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACCGTGCTTCAGTCTTCTaGTTTACTGGTTCTTCTTTA +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHRASVF*FTGSSL
Trigger: TAAAGAAGAACCAGTAAATCAGAAGACTGAAGCACG...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp TGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCAAGGCCATCTTGAAAGTTGAATTGTaGATCTATAAGTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: CKSQHSDEGRRIKEFKAILKVEL*IYKLLV
Trigger: CACCAGCAACTTATAGATGCACAATTCAACTTTCAA...GATGGCCTTGAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTATAGTTGGCTCTTGGTaGGGTGAATGGAAACGCTGC +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLIVGSW*GEWKRC
Trigger: GCAGCGTTTCCATTCACCCCACCAAGAGCCAACTAT...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp ATCTGCAAATCCCAGCACTCAGATGAAGGTAGGAGGATCAAGGAGTTCAAGGCCACATCTGACTATATCTaGTATATAGTGCGTGTGAAA +
Preference number: 4 (lower is better)
Translates to: ICKSQHSDEGRRIKEFKATSDYI*YIVRVK
Trigger: TTTCACACGCACTATATACCAGATATAGTCAGATGT...GGCCTTGAACTCCTTGATCCTCCTACCTTCATCTGAGTGCTGGGATTTGCAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS-3UTR CCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCATGTGGGAAGAGCAGCTaGATCTCTCTCTGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSCGKSS*ISLCSC
Trigger: ACAGCTGCAGAGAGAGATCCAGCTGCTCTTCCCACA...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAAGCTGGATCTCTCTCTaGAGCTGTGCTCTACAGAGT +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSSWISL*SCALQS
Trigger: ACTCTGTAGAGCACAGCTGCAGAGAGAGATCCAGCT...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAATGGCCTCAGGCAGTGTaGTTTCTCGAGGTTCTAACA +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKWPQAV*FLEVLT
Trigger: TGTTAGAACCTCGAGAAATCACACTGCCTGAGGCCA...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGCTTATGGACTAAGGTaGGTATATGTCGTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLAYGLR*VYVVLQ
Trigger: CTGAAGCACGACATATACTCACCTTAGTCCATAAGC...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACTTGAAAGTTGAATTGTaGATCTATAAGTTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHLKVEL*IYKLLV
Trigger: CACCAGCAACTTATAGATGCACAATTCAACTTTCAA...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTCTCTCTCTGCAGCTGTaGTCTACAGAGTTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLLSLQL*STEFFL
Trigger: AAGAAAGAACTCTGTAGAGCACAGCTGCAGAGAGAG...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATACAACGAGAAAAAGTCTaGTTTGTGGGAAGAGCAGCT +
Preference number: 4 (lower is better)
Translates to: AKSHVVLRISMWYKYLRIQREKV*FVGRAA
Trigger: AGCTGCTCTTCCCACAAAGCAGACTTTTTCTCGTTG...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTATAAATCGCCATCACTaGTTCGGGCACCAAATCCAT +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLINRHH*FGHQIH
Trigger: ATGGATTTGGTGCCCGAAGCAGTGATGGCGATTTAT...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTCACAATTGGCACTTTTaGTCGAATCAGCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLHNWHF*SNQLRS
Trigger: AGACCTCAGCTGATTCGAGCAAAAGTGCCAATTGTG...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAATCTTGGTGGGGTGAATaGAAACGCTGCCGTTTACCA +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKSWWGE*KRCRLP
Trigger: TGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGA...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAAACAACGGTGGCATaGAATATCTTCTGTCACCTG +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLETTVA*NIFCHL
Trigger: CAGGTGACAGAAGATATTCCATGCCACCGTTGTTTC...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAAGGAGGGACATTACATaGGGCATGATGAACAAGGTG +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSRRDIT*GMMNKV
Trigger: CACCTTGTTCATCATGCCCCATGTAATGTCCCTCCT...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTTCACTTGCTTGCTGCTaGCAAGTTTCAAACAACTCT +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLSLACC*QVSNNS
Trigger: AGAGTTGTTTGAAACTTGTCAGCAGCAAGCAAGTGA...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATATCACTTGCTTGCTGCTaGCAAGTTTCAAACAACTCT +
Preference number: 4 (lower is better)
Translates to: AKSHVVLRISMWYKYLRISLACC*QVSNNS
Trigger: AGAGTTGTTTGAAACTTGTCAGCAGCAAGCAAGTGA...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAGCTTATGGACTAAGGTaGGTATATGTCGTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSAYGLR*VYVVLQ
Trigger: CTGAAGCACGACATATACTCACCTTAGTCCATAAGC...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATATTTGGCTTCACGAACTaGAATCATCTGAGTGTTCCA +
Preference number: 4 (lower is better)
Translates to: AKSHVVLRISMWYKYLRIFGFTN*NHLSVP
Trigger: TGGAACACTCAGATGATTTCAGTTCGTGAAGCCAAA...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGCAAAGAAGTTATTATaGTGTTGGTGGGTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLAKKLL*CWWVGV
Trigger: CACTCCAACCCACCAACAGCATAATAACTTCTTTGC...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAGGTGAATGGAAACGCTaGCGTTTACCATCAAGAGGA +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKGEWKR*RLPSRG
Trigger: TCCTCTTGATGGTAAACGGCAGCGTTTCCATTCACC...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCACAACGAGAAAAAGTCTaGTTTGTGGGAAGAGCAGCT +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSQREKV*FVGRAA
Trigger: AGCTGCTCTTCCCACAAAGCAGACTTTTTCTCGTTG...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAATAAATCGCCATCACTaGTTCGGGCACCAAATCCAT +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSINRHH*FGHQIH
Trigger: ATGGATTTGGTGCCCGAAGCAGTGATGGCGATTTAT...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAGATGTCATGGTGACTTaGCCACTTCTTAATCACCAG +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSDVMVT*PLLNHQ
Trigger: CTGGTGATTAAGAAGTGGGCAAGTCACCATGACATC...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTATACAAGACTATAGCTaGTTAATGTGCCACGACTGG +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLIQDYS*LMCHDW
Trigger: CCAGTCGTGGCACATTAAGCAGCTATAGTCTTGTAT...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAAACTTCTGCTTCTCATaGACAGCTCTGGCGGTATTA +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSNFCFS*TALAVL
Trigger: TAATACCGCCAGAGCTGTGCATGAGAAGCAGAAGTT...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCATTATTATGCTGTTGGTaGGTTGGAGTGAAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSLLCCW*VGVKGG
Trigger: TCCACCCTTCACTCCAACCCACCAACAGCATAATAA...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAATTATAGTTGGCTCTTaGTGGGGTGAATGGAAACGC +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSIIVGS*WGEWKR
Trigger: GCGTTTCCATTCACCCCACCAAGAGCCAACTATAAT...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCATCATTGATGTCATGGTaGCTTGCCCACTTCTTAATC +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSSLMSW*LAHFLI
Trigger: GATTAAGAAGTGGGCAAGTCACCATGACATCAATGA...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTCGAACTGAAATCATCTaGGTGTTCCAGTCAAATTCT +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLRTEII*VFQSNS
Trigger: AGAATTTGACTGGAACACTCAGATGATTTCAGTTCG...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAGCAAAGAAGTTATTATaGTGTTGGTGGGTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSAKKLL*CWWVGV
Trigger: CACTCCAACCCACCAACAGCATAATAACTTCTTTGC...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGATAAAGGCACTAGCTaGTTGATTATAGTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLDKGTS*LIIVGS
Trigger: AGAGCCAACTATAATCAACCAGCTAGTGCCTTTATC...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAAAAAAGTCTGCTTTGTaGGAAGAGCAGCTGGATCTC +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKKKSAL*EEQLDL
Trigger: GAGATCCAGCTGCTCTTCCCACAAAGCAGACTTTTT...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
39% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAGAGGTGGAACACATCTaGCTATATCTGGTATATAGT +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSEVEHI*LYLVYS
Trigger: ACTATATACCAGATATAGTCAGATGTGTTCCACCTC...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAATCATTGATGTCATGGTaGCTTGCCCACTTCTTAATC +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKSLMSW*LAHFLI
Trigger: GATTAAGAAGTGGGCAAGTCACCATGACATCAATGA...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR TCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAATTTGGCTTCACGAACTaGAATCATCTGAGTGTTCCA +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKFGFTN*NHLSVP
Trigger: TGGAACACTCAGATGATTTCAGTTCGTGAAGCCAAA...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAGGTGAGTATATGTCGTaGTTCAGTCTTCTGATTTAC +
Preference number: 4 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSGEYMS*FSLLIY
Trigger: GTAAATCAGAAGACTGAAGCACGACATATACTCACC...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAATCATATCAAACTTCTaGTTCTCATGCACAGCTCTG +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSIISNF*FSCTAL
Trigger: CAGAGCTGTGCATGAGAAGCAGAAGTTTGATATGAT...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATAGTACAGAAGTGCTTATaGACTAAGGTGAGTATATGT +
Preference number: 4 (lower is better)
Translates to: AKSHVVLRISMWYKYLRIVQKCL*TKVSIC
Trigger: ACATATACTCACCTTAGTCCATAAGCACTTCTGTAC...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR GCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAGGTGAGTATATGTCGTaGTTCAGTCTTCTGATTTAC +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKGEYMS*FSLLIY
Trigger: GTAAATCAGAAGACTGAAGCACGACATATACTCACC...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAGATAAAGGCACTAGCTaGTTGATTATAGTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKDKGTS*LIIVGS
Trigger: AGAGCCAACTATAATCAACCAGCTAGTGCCTTTATC...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTACATCTGACTATATCTaGTATATAGTGCGTGTGAAA +
Preference number: 4 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLTSDYI*YIVRVK
Trigger: TTTCACACGCACTATATACCAGATATAGTCAGATGT...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAGTACAGAAGTGCTTATaGACTAAGGTGAGTATATGT +
Preference number: 4 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSVQKCL*TKVSIC
Trigger: ACATATACTCACCTTAGTCCATAAGCACTTCTGTAC...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CCA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAACATCTGACTATATCTaGTATATAGTGCGTGTGAAA +
Preference number: 4 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKTSDYI*YIVRVK
Trigger: TTTCACACGCACTATATACCAGATATAGTCAGATGT...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGGAGAAAAAGTCTGCTTaGTGGGAAGAGCAGCTGGAT +
Preference number: 5 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVEKKSA*WEEQLD
Trigger: ATCCAGCTGCTCTTCCCACAAAGCAGACTTTTTCTC...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CCACTTCCCAGGCAGTGTCACTGTGACGCTGGTTTAGCTGTCTTGCTACTAGGATCCTGGGTAAATTTTTaGGAGGGATGGAAGGATGGG +
Preference number: 5 (lower is better)
Translates to: PLPRQCHCDAGLAVLLLGSWVNF*EGWKDG
Trigger: CCCATCCTTCCATCCCTCCAAAAAATTTACCCAGGA...TCCTAGTAGCAAGACAGCTAAACCAGCGTCACAGTGACACTGCCTGGGAAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226081.2
CDS-3UTR CAA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGCCTTGGGATGGCTTaGGCTTCACGAACTGAAATC +
Preference number: 5 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPGLGMA*ASRTEI
Trigger: GATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCC...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGCTTCAAGTCACTTGCTaGCTGCTGACAAGTTTCAAA +
Preference number: 5 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVLQVTC*LLTSFK
Trigger: TTTGAAACTTGTCAGCAGCAAGCAAGTGACTTGAAG...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGGACTTGATTCATTCTTaGAGAGGTAAGGAGGGACAT +
Preference number: 5 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVDLIHS*RGKEGH
Trigger: ATGTCCCTCCTTACCTCTCAAAGAATGAATCAAGTC...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CCA 90 bp AACGGTGGCATGGAATATCTTCTGTCACCTGATAAAGGCACTAGCTaGTTGATTATAGTTGGCTCTTGGTGGGGTGAATGGAAACGCTGC +
Preference number: 5 (lower is better)
Translates to: NGGMEYLLSPDKGTS*LIIVGSWWGEWKRC
Trigger: GCAGCGTTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGACAGAAGATATTCCATGCCACCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCATCACAATTGGCACTTTaGCTCGAATCAGCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPSQLAL*LESAEV
Trigger: GACCTCAGCTGATTCGAGCAAAAGTGCCAATTGTGA...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGGGAGTCGAGTGCTGTTCAGATCTCTCTaGTTTTTCAATCTCTGCCAT +
Preference number: 5 (lower is better)
Translates to: KCYKQYSHPSDSVPGSRVLFRSL*FFNLCH
Trigger: ATGGCAGAGATTGAAAAACAAGAGAGATCTGAACAG...CACTCGACTCCCTGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp GAAGGTAGGAGGATCAAGGAGTTCAAGGCCATCCTTTGCTTCATAGGGAATTCCATGAGACCCTTATCTTaGGCCTCAGGCAGTGTGATT +
Preference number: 5 (lower is better)
Translates to: EGRRIKEFKAILCFIGNSMRPLS*ASGSVI
Trigger: AATCACACTGCCTGAGGCCAAAGATAAGGGTCTCAT...GGAATTCCCTATGAAGCAAAGGATGGCCTTGAACTCCTTGATCCTCCTACCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS CCA 90 bp TCACCTGATAAAGGCACTAGCTGGTTGATTATAGTTGGCTCTTGGTaGGGTGAATGGAAACGCTGCCGTTTACCATCAAGAGGAAAAGCT +
Preference number: 5 (lower is better)
Translates to: SPDKGTSWLIIVGSW*GEWKRCRLPSRGKA
Trigger: AGCTTTTCCTCTTGATGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CCA 90 bp CTGTCACCTGATAAAGGCACTAGCTGGTTGATTATAGTTGGCTCTTaGTGGGGTGAATGGAAACGCTGCCGTTTACCATCAAGAGGAAAA +
Preference number: 5 (lower is better)
Translates to: LSPDKGTSWLIIVGS*WGEWKRCRLPSRGK
Trigger: TTTTCCTCTTGATGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAAAAGGCACTAGCTGGTaGATTATAGTTGGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPKGTSW*IIVGSW
Trigger: CCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTT...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp GAAGGTAGGAGGATCAAGGAGTTCAAGGCCATCCTTTGCTTCATAGGGAATTCCAAAGGCACTAGCTGGTaGATTATAGTTGGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: EGRRIKEFKAILCFIGNSKGTSW*IIVGSW
Trigger: CCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTT...GGAATTCCCTATGAAGCAAAGGATGGCCTTGAACTCCTTGATCCTCCTACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224545.2
CDS TCA 90 bp CTCGAGGTTCTAACAGTGGAATTTCTCGAAGAGGTGGAACACATCTaGCTATATCTGGTATATAGTGCGTGTGAAACAACGGTGGCATGG +
Preference number: 5 (lower is better)
Translates to: LEVLTVEFLEEVEHI*LYLVYSACETTVAW
Trigger: CCATGCCACCGTTGTTTCACACGCACTATATACCAGATATAGTCAGATGTGTTCCACCTCTTCGAGAAATTCCACTGTTAGAACCTCGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp AAGTCAGTTGTGAAGTGCTATAAACAGTACAGCCACCCCTCAGACAGTGTCCCAGACTTGATTCATTCTTaGAGAGGTAAGGAGGGACAT +
Preference number: 5 (lower is better)
Translates to: KSVVKCYKQYSHPSDSVPDLIHS*RGKEGH
Trigger: ATGTCCCTCCTTACCTCTCAAAGAATGAATCAAGTC...TGGGACACTGTCTGAGGGGTGGCTGTACTGTTTATAGCACTTCACAACTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACAGAGGTCCCCAAGACTaGATTCATTCTTTGAGAGGT +
Preference number: 5 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHRGPQD*IHSLRG
Trigger: ACCTCTCAAAGAATGAATCAAGTCTTGGGGACCTCT...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS TCA 90 bp ACTCTAGTATCTGCTGACTCAACTTATCTTTGGCCTCAGGCAGTGTaGTTTCTCGAGGTTCTAACAGTGGAATTTCTCGAAGAGGTGGAA +
Preference number: 5 (lower is better)
Translates to: TLVSADSTYLWPQAV*FLEVLTVEFLEEVE
Trigger: TTCCACCTCTTCGAGAAATTCCACTGTTAGAACCTCGAGAAATCACACTGCCTGAGGCCAAAGATAAGTTGAGTCAGCAGATACTAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CTGCTGCTGCTGCTGCCAGTTATACTAAGTACTAGGATCTTTGCAAAATCCCACCTTCAAGTCACTTGCTaGCTGCTGACAAGTTTCAAA +
Preference number: 5 (lower is better)
Translates to: LLLLLPVILSTRIFAKSHLQVTC*LLTSFK
Trigger: TTTGAAACTTGTCAGCAGCAAGCAAGTGACTTGAAG...GTGGGATTTTGCAAAGATCCTAGTACTTAGTATAACTGGCAGCAGCAGCAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp GCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTGAGAATAGGCCTTGGGATGGCTTaGGCTTCACGAACTGAAATC +
Preference number: 5 (lower is better)
Translates to: AKSHVVLRISMWYKYLRIGLGMA*ASRTEI
Trigger: GATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCC...TATTCTCAAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS GCA 90 bp TTCCACACAACTGACTTTATCCCTGAACTTCACAATTGGCACTTTTaGTCGAATCAGCTGAGGTCTCTCAATATAGCCAGACAGTCTAGT +
Preference number: 5 (lower is better)
Translates to: FHTTDFIPELHNWHF*SNQLRSLNIARQSS
Trigger: ACTAGACTGTCTGGCTATATTGAGAGACCTCAGCTGATTCGAGCAAAAGTGCCAATTGTGAAGTTCAGGGATAAAGTCAGTTGTGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CCA 90 bp CACAGATGTATTTATTTCTCCATTCCATATCATCAGGCCTTGGGATaGCTTTGGCTTCACGAACTGAAATCATCTGAGTGTTCCAGTCAA +
Preference number: 5 (lower is better)
Translates to: HRCIYFSIPYHQALG*LWLHELKSSECSSQ
Trigger: TTGACTGGAACACTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATGGAATGGAGAAATAAATACATCTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTTCACAATTGGCACTTTaGCTCGAATCAGCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLSQLAL*LESAEV
Trigger: GACCTCAGCTGATTCGAGCAAAAGTGCCAATTGTGA...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS TCA 90 bp CCATTCCATATCATCAGGCCTTGGGATGGCTTTGGCTTCACGAACTaGAATCATCTGAGTGTTCCAGTCAAATTCTGTAGCATAATATTT +
Preference number: 5 (lower is better)
Translates to: PFHIIRPWDGFGFTN*NHLSVPVKFCSIIF
Trigger: AAATATTATGCTACAGAATTTGACTGGAACACTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATGGAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCAGAGAAAAAGTCTGCTTaGTGGGAAGAGCAGCTGGAT +
Preference number: 5 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSEKKSA*WEEQLD
Trigger: ATCCAGCTGCTCTTCCCACAAAGCAGACTTTTTCTC...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCAAAAGGCACTAGCTGGTaGATTATAGTTGGCTCTTGG +
Preference number: 5 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSKGTSW*IIVGSW
Trigger: CCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTT...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CACTGTAGGCCTACAAGAAGTTTGCAATCTTTGAAAAAGTTAAAACTGCCTTCATTCTGGGTAAATTTTTaGGAGGGATGGAAGGATGGG +
Preference number: 5 (lower is better)
Translates to: HCRPTRSLQSLKKLKLPSFWVNF*EGWKDG
Trigger: CCCATCCTTCCATCCCTCCAAAAAATTTACCCAGAA...TGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAGGCCTACAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CAAGTAGGATATAATCTCAACGTTGATGTTTCCGTTTTCTGCTGTTTCCTATCATTCTGGGTAAATTTTTaGGAGGGATGGAAGGATGGG +
Preference number: 5 (lower is better)
Translates to: QVGYNLNVDVSVFCCFLSFWVNF*EGWKDG
Trigger: CCCATCCTTCCATCCCTCCAAAAAATTTACCCAGAA...TGATAGGAAACAGCAGAAAACGGAAACATCAACGTTGAGATTATATCCTACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp CTTATTAAACAGCTTAGCTTGCATCTGAACTACTACTTTCATGTGGAAGAGAAAAGAGGTCCCCAAGACTaGATTCATTCTTTGAGAGGT +
Preference number: 5 (lower is better)
Translates to: LIKQLSLHLNYYFHVEEKRGPQD*IHSLRG
Trigger: ACCTCTCAAAGAATGAATCAAGTCTTGGGGACCTCT...TTTCTCTTCCACATGAAAGTAGTAGTTCAGATGCAAGCTAAGCTGTTTAATAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS-3UTR CAA 90 bp GATCTTTGCAAAATCCCACGTAGTTCTCAGGATAAGTATGTGGTACAAGTACTTCTGTTCAGATCTCTCTaGTTTTTCAATCTCTGCCAT +
Preference number: 5 (lower is better)
Translates to: DLCKIPRSSQDKYVVQVLLFRSL*FFNLCH
Trigger: ATGGCAGAGATTGAAAAACAAGAGAGATCTGAACAG...AAGTACTTGTACCACATACTTATCCTGAGAACTACGTGGGATTTTGCAAAGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CAA 90 bp GGTGGCATGGAATATCTTCTGTCACCTGATAAAGGCACTAGCTGGTaGATTATAGTTGGCTCTTGGTGGGGTGAATGGAAACGCTGCCGT +
Preference number: 6 (lower is better)
Translates to: GGMEYLLSPDKGTSW*IIVGSWWGEWKRCR
Trigger: ACGGCAGCGTTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGACAGAAGATATTCCATGCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS GCA 72 bp AGTCTGCTTTGTGGGAAGAGCAGCTGGATCTCTCTCTaGAGCTGTGCTCTACAGAGTTCTTTCTTCTTCAAG +
Preference number: 6 (lower is better)
Translates to: SLLCGKSSWISL*SCALQSSFFFK
Trigger: CTTGAAGAAGAAAGAACTCTGTAGAGCACAGCTGCAGAGAGAGATCCAGCTGCTCTTCCCACAAAGCAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS TCA 72 bp GCCATCACTGCTTCGGGCACCAAATCCATTCAAAGATaGTCCAACGAGAAAAAGTCTGCTTTGTGGGAAGAG +
Preference number: 6 (lower is better)
Translates to: AITASGTKSIQR*SNEKKSALWEE
Trigger: CTCTTCCCACAAAGCAGACTTTTTCTCGTTGGATCATCTTTGAATGGATTTGGTGCCCGAAGCAGTGATGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CCA 72 bp GTTGGTGAGAGAGCAAAGAAGTTATTATGCTGTTGGTaGGTTGGAGTGAAGGGTGGACGACCCAAAATTGAG +
Preference number: 6 (lower is better)
Translates to: VGERAKKLLCCW*VGVKGGRPKIE
Trigger: CTCAATTTTGGGTCGTCCACCCTTCACTCCAACCCACCAACAGCATAATAACTTCTTTGCTCTCTCACCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CCA 72 bp AGCTGGTTGATTATAGTTGGCTCTTGGTGGGGTGAATaGAAACGCTGCCGTTTACCATCAAGAGGAAAAGCT +
Preference number: 6 (lower is better)
Translates to: SWLIIVGSWWGE*KRCRLPSRGKA
Trigger: AGCTTTTCCTCTTGATGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CCA 72 bp GATAAAGGCACTAGCTGGTTGATTATAGTTGGCTCTTaGTGGGGTGAATGGAAACGCTGCCGTTTACCATCA +
Preference number: 6 (lower is better)
Translates to: DKGTSWLIIVGS*WGEWKRCRLPS
Trigger: TGATGGTAAACGGCAGCGTTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CAA 72 bp AGCCCAGTAAGAGGTCCCCAAGACTTGATTCATTCTTaGAGAGGTAAGGAGGGACATTACATGGGGCATGAT +
Preference number: 6 (lower is better)
Translates to: SPVRGPQDLIHS*RGKEGHYMGHD
Trigger: ATCATGCCCCATGTAATGTCCCTCCTTACCTCTCAAAGAATGAATCAAGTCTTGGGGACCTCTTACTGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS TCA 72 bp CTCGAAATAATGGAGATGTTGAGGTCTGTATTGGACTaGCAGTTCCATATGTCAGGGGCTGTAAGGACACAG +
Preference number: 6 (lower is better)
Translates to: LEIMEMLRSVLD*QFHMSGAVRTQ
Trigger: CTGTGTCCTTACAGCCCCTGACATATGGAACTGTCAGTCCAATACAGACCTCAACATCTCCATTATTTCGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS TCA 72 bp CTTAATGTGCCACGACTGGCATCATTGATGTCATGGTaGCTTGCCCACTTCTTAATCACCAGCACTAATGGA +
Preference number: 6 (lower is better)
Translates to: LNVPRLASLMSW*LAHFLITSTNG
Trigger: TCCATTAGTGCTGGTGATTAAGAAGTGGGCAAGTCACCATGACATCAATGATGCCAGTCGTGGCACATTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
ENSMUST00000226081.2
CDS TCA 72 bp ATCATCAGGCCTTGGGATGGCTTTGGCTTCACGAACTaGAATCATCTGAGTGTTCCAGTCAAATTCTGTAGC +
Preference number: 6 (lower is better)
Translates to: IIRPWDGFGFTN*NHLSVPVKFCS
Trigger: GCTACAGAATTTGACTGGAACACTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CCA 72 bp AGAGTTGGTGAGAGAGCAAAGAAGTTATTATGCTGTTaGTGGGTTGGAGTGAAGGGTGGACGACCCAAAATT +
Preference number: 6 (lower is better)
Translates to: RVGERAKKLLCC*WVGVKGGRPKI
Trigger: AATTTTGGGTCGTCCACCCTTCACTCCAACCCACCAACAGCATAATAACTTCTTTGCTCTCTCACCAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS TCA 72 bp TCTGCTGACTCAACTTATCTTTGGCCTCAGGCAGTGTaGTTTCTCGAGGTTCTAACAGTGGAATTTCTCGAA +
Preference number: 6 (lower is better)
Translates to: SADSTYLWPQAV*FLEVLTVEFLE
Trigger: TTCGAGAAATTCCACTGTTAGAACCTCGAGAAATCACACTGCCTGAGGCCAAAGATAAGTTGAGTCAGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CCA 72 bp ATGGAATATCTTCTGTCACCTGATAAAGGCACTAGCTaGTTGATTATAGTTGGCTCTTGGTGGGGTGAATGG +
Preference number: 6 (lower is better)
Translates to: MEYLLSPDKGTS*LIIVGSWWGEW
Trigger: CCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGACAGAAGATATTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS GCA 72 bp ACTGACTTTATCCCTGAACTTCACAATTGGCACTTTTaGTCGAATCAGCTGAGGTCTCTCAATATAGCCAGA +
Preference number: 6 (lower is better)
Translates to: TDFIPELHNWHF*SNQLRSLNIAR
Trigger: TCTGGCTATATTGAGAGACCTCAGCTGATTCGAGCAAAAGTGCCAATTGTGAAGTTCAGGGATAAAGTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CCA 72 bp TATCTGGTATATAGTGCGTGTGAAACAACGGTGGCATaGAATATCTTCTGTCACCTGATAAAGGCACTAGCT +
Preference number: 6 (lower is better)
Translates to: YLVYSACETTVA*NIFCHLIKALA
Trigger: AGCTAGTGCCTTTATCAGGTGACAGAAGATATTCCATGCCACCGTTGTTTCACACGCACTATATACCAGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CCA 72 bp AATTTCTCGAAGAGGTGGAACACATCTGACTATATCTaGTATATAGTGCGTGTGAAACAACGGTGGCATGGA +
Preference number: 6 (lower is better)
Translates to: NFSKRWNTSDYI*YIVRVKQRWHG
Trigger: TCCATGCCACCGTTGTTTCACACGCACTATATACCAGATATAGTCAGATGTGTTCCACCTCTTCGAGAAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CAA 72 bp GAATATCTTCTGTCACCTGATAAAGGCACTAGCTGGTaGATTATAGTTGGCTCTTGGTGGGGTGAATGGAAA +
Preference number: 6 (lower is better)
Translates to: EYLLSPDKGTSW*IIVGSWWGEWK
Trigger: TTTCCATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGACAGAAGATATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CAA 90 bp CTTCAACACAGATGTATTTATTTCTCCATTCCATATCATCAGGCCTaGGGATGGCTTTGGCTTCACGAACTGAAATCATCTGAGTGTTCC +
Preference number: 6 (lower is better)
Translates to: LQHRCIYFSIPYHQA*GWLWLHELKSSECS
Trigger: GGAACACTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATGGAATGGAGAAATAAATACATCTGTGTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS TCA 72 bp CTAACAGTGGAATTTCTCGAAGAGGTGGAACACATCTaGCTATATCTGGTATATAGTGCGTGTGAAACAACG +
Preference number: 6 (lower is better)
Translates to: LTVEFLEEVEHI*LYLVYSACETT
Trigger: CGTTGTTTCACACGCACTATATACCAGATATAGTCAGATGTGTTCCACCTCTTCGAGAAATTCCACTGTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000048702.7
ENSMUST00000224464.2
ENSMUST00000224545.2
ENSMUST00000225868.2
CDS CCA 72 bp ATTTATTTCTCCATTCCATATCATCAGGCCTTGGGATaGCTTTGGCTTCACGAACTGAAATCATCTGAGTGT +
Preference number: 6 (lower is better)
Translates to: IYFSIPYHQALG*LWLHELKSSEC
Trigger: ACACTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATGGAATGGAGAAATAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2
CDS CAA 72 bp GTTCTGAGAAGGAATGTATTTCTAATTCCAACGGTATaGTTTACATTTAAGTCGAATTCCACACAACTGACT +
Preference number: 6 (lower is better)
Translates to: VLRRNVFLIPTV*FTFKSNSTQLT
Trigger: AGTCAGTTGTGTGGAATTCGACTTAAATGTAAACAATACCGTTGGAATTAGAAATACATTCCTTCTCAGAAC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048702.7
ENSMUST00000225868.2