RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TEFM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046909

Ensembl transcript IDs: ENSMUST00000050207.10, ENSMUST00000131601.2, ENSMUST00000136996.2

Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCTCCCACTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTGCTTaGCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTGGCCAT +
Preference number: 1 (lower is better)
Translates to: PSHSSSCRRSSGQSA*PPHFDLCSARGAGH
Trigger: ATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGAGTGGGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 90 bp AGCTCCCTCCCACTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTaGTTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTGG +
Preference number: 1 (lower is better)
Translates to: SSLPLVLVSPIIRSK*LPTAFRFMLSTRCW
Trigger: CCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGAGTGGGAGGGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 90 bp AAGAACACCCGAGGCCGCTCCTTCAGCACAGACTCAGAGAGGAACTaGTTCACTAGCTCCCTCCCACTCGTCCTCGTGTCGCCGATCATC +
Preference number: 1 (lower is better)
Translates to: KNTRGRSFSTDSERN*FTSSLPLVLVSPII
Trigger: GATGATCGGCGACACGAGGACGAGTGGGAGGGAGCTAGTGAAGCAGTTCCTCTCTGAGTCTGTGCTGAAGGAGCGGCCTCGGGTGTTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 90 bp TCAAAGTGCTTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTaGTGGCCATCCTCGGCAAAAGTTTTGTTGAGTAAGGCATACAGC +
Preference number: 1 (lower is better)
Translates to: SKCLPTAFRFMLSTR*WPSSAKVLLSKAYS
Trigger: GCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CCA 90 bp AAGTGCTTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTaGCCATCCTCGGCAAAAGTTTTGTTGAGTAAGGCATACAGCATG +
Preference number: 1 (lower is better)
Translates to: KCLPTAFRFMLSTRC*PSSAKVLLSKAYSM
Trigger: CATGCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 90 bp TCCCTCCCACTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTGCTaGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTGGCCA +
Preference number: 2 (lower is better)
Translates to: SLPLVLVSPIIRSKC*PTAFRFMLSTRCWP
Trigger: TGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGAGTGGGAGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR TCA 90 bp TTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTGGCCATCCTCGGCAAGCAGAGATGTGTTCTaGATGGAAAGTCCTGATTTT +
Preference number: 2 (lower is better)
Translates to: LPTAFRFMLSTRCWPSSASRDVF*MESPDF
Trigger: AAAATCAGGACTTTCCATTCAGAACACATCTCTGCT...TGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR TCA 90 bp TCAGGTCAAAGTGCTTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTCGGCAAAAGTTTTGTTaGGTAAGGCATACAGCATGG +
Preference number: 2 (lower is better)
Translates to: SGQSACPPHFDLCSARGARQKFC*VRHTAW
Trigger: CCATGCTGTATGCCTTACTCAACAAAACTTTTGCCG...AGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR CCA 90 bp GCTTCACTAGCTCCCTCCCACTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTTGTTTTCCACTAACATaGAAGATGGGAACCATTGCT +
Preference number: 2 (lower is better)
Translates to: ASLAPSHSSSCRRSSGQSCFPLT*KMGTIA
Trigger: AGCAATGGTTCCCATCTTCCATGTTAGTGGAAAACA...ACTTTGACCTGATGATCGGCGACACGAGGACGAGTGGGAGGGAGCTAGTGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 90 bp CGATTTATGCTCAGCACGCGGTGCTGGCCATCCTCGGCAAAAGTTTaGTTGAGTAAGGCATACAGCATGGCTTCCGTGATAAGAAAGTGT +
Preference number: 2 (lower is better)
Translates to: RFMLSTRCWPSSAKV*LSKAYSMASVIRKC
Trigger: ACACTTTCTTATCACGGAAGCCATGCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR TCA 90 bp TGTACTGCACTAAGAGGTCCTGTGGGAAGAACACCCGAGGCCGCTCCTTCAGCACTGAATGGAAAGTCCTaGTTTTTCCAAAATGTAGAG +
Preference number: 2 (lower is better)
Translates to: CTALRGPVGRTPEAAPSALNGKS*FFQNVE
Trigger: CTCTACATTTTGGAAAAATCAGGACTTTCCATTCAG...TGCTGAAGGAGCGGCCTCGGGTGTTCTTCCCACAGGACCTCTTAGTGCAGTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR GCA 90 bp CGGTATGAGCTCTTGACAACCTTCTGTCTGTACTGCACTAAGAGGTCCTGTGGGTCAGGTCAAAGTGCTTaGCCACCGCATTTCGATTTA +
Preference number: 2 (lower is better)
Translates to: RYELLTTFCLYCTKRSCGSGQSA*PPHFDL
Trigger: TAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGA...CCCACAGGACCTCTTAGTGCAGTACAGACAGAAGGTTGTCAAGAGCTCATACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 90 bp TTTATGCTCAGCACGCGGTGCTGGCCATCCTCGGCAAAAGTTTTGTaGAGTAAGGCATACAGCATGGCTTCCGTGATAAGAAAGTGTAAC +
Preference number: 2 (lower is better)
Translates to: FMLSTRCWPSSAKVL*SKAYSMASVIRKCN
Trigger: GTTACACTTTCTTATCACGGAAGCCATGCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 90 bp GCTTGTAATAATGAGTCATACAACTCTTCAATCCGGTATGAGCTCTaGACAACCTTCTGTCTGTACTGCACTAAGAGGTCCTGTGGGAAG +
Preference number: 2 (lower is better)
Translates to: ACNNESYNSSIRYEL*TTFCLYCTKRSCGK
Trigger: CTTCCCACAGGACCTCTTAGTGCAGTACAGACAGAAGGTTGTCAAGAGCTCATACCGGATTGAAGAGTTGTATGACTCATTATTACAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR GCA 90 bp AAAGCAACAGCTTGTAATAATGAGTCATACAACTCTTCAATCCGGTATGAGCTCATCATCAGGTCAAAGTaGTTGCCCACCGCATTTCGA +
Preference number: 2 (lower is better)
Translates to: KATACNNESYNSSIRYELIIRSK*LPTAFR
Trigger: TCGAAATGCGGTGGGCAAGCACTTTGACCTGATGAT...GAGCTCATACCGGATTGAAGAGTTGTATGACTCATTATTACAAGCTGTTGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR CCA 90 bp ACAGCTTGTAATAATGAGTCATACAACTCTTCAATCCGGTATGAGCTCTTGACAGAGATGTGTTCTGAATaGAAAGTCCTGATTTTTCCA +
Preference number: 2 (lower is better)
Translates to: TACNNESYNSSIRYELLTEMCSE*KVLIFP
Trigger: TGGAAAAATCAGGACTTTCCATTCAGAACACATCTC...TGTCAAGAGCTCATACCGGATTGAAGAGTTGTATGACTCATTATTACAAGCTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 72 bp TCAGGTCAAAGTGCTTGCCCACCGCATTTCGATTTATaGTCAGCACGCGGTGCTGGCCATCCTCGGCAAAAG +
Preference number: 3 (lower is better)
Translates to: SGQSACPPHFDL*SARGAGHPRQK
Trigger: CTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 72 bp TCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTGCTTaGCCACCGCATTTCGATTTATGCTCAGCACGCGGT +
Preference number: 3 (lower is better)
Translates to: SSSCRRSSGQSA*PPHFDLCSARG
Trigger: ACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 72 bp CCACTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTaGTTGCCCACCGCATTTCGATTTATGCTCAGCACG +
Preference number: 3 (lower is better)
Translates to: PLVLVSPIIRSK*LPTAFRFMLST
Trigger: CGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 72 bp ATCCGGTATGAGCTCTTGACAACCTTCTGTCTGTACTaGACTAAGAGGTCCTGTGGGAAGAACACCCGAGGC +
Preference number: 3 (lower is better)
Translates to: IRYELLTTFCLY*TKRSCGKNTRG
Trigger: GCCTCGGGTGTTCTTCCCACAGGACCTCTTAGTGCAGTACAGACAGAAGGTTGTCAAGAGCTCATACCGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CCA 72 bp CCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTaGCCATCCTCGGCAAAAGTTTTGTTGAGTAAGGCA +
Preference number: 3 (lower is better)
Translates to: PTAFRFMLSTRC*PSSAKVLLSKA
Trigger: TGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR GCA 72 bp TTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTaGTGGCCATCCTCGGCAAAAGTTTTGTTGAGTAAG +
Preference number: 3 (lower is better)
Translates to: LPTAFRFMLSTR*WPSSAKVLLSK
Trigger: CTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR-3UTR CAA 90 bp TCGTGTCGCCGATCATCAGGTCAAAGTGCTTGCCCACCGCATTTCGATTTATGCTCGGCAAAAGTTTTGTaGAGTAAGGCATACAGCATG +
Preference number: 3 (lower is better)
Translates to: SCRRSSGQSACPPHFDLCSAKVL*SKAYSM
Trigger: CATGCTGTATGCCTTACTCAACAAAACTTTTGCCGA...GCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR TCA 72 bp ATGAGTCATACAACTCTTCAATCCGGTATGAGCTCTTaGCAACCTTCTGTCTGTACTGCACTAAGAGGTCCT +
Preference number: 3 (lower is better)
Translates to: MSHTTLQSGMSS*QPSVCTALRGP
Trigger: AGGACCTCTTAGTGCAGTACAGACAGAAGGTTGTCAAGAGCTCATACCGGATTGAAGAGTTGTATGACTCAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
CDS-3UTR TCA 90 bp GCTTGCCCACCGCATTTCGATTTATGCTCAGCACGCGGTGCTGGCCATCCTCGGGGTCTCCGGTCAAGGTaGGCCCATGCAATTCTTCGA +
Preference number: 4 (lower is better)
Translates to: ACPPHFDLCSARGAGHPRGLRSR*AHAILR
Trigger: TCGAAGAATTGCATGGGCTCACCTTGACCGGAGACC...CCGAGGATGGCCAGCACCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 72 bp CTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTGCTaGCCCACCGCATTTCGATTTATGCTCAGCACGCGG +
Preference number: 4 (lower is better)
Translates to: LVLVSPIIRSKC*PTAFRFMLSTR
Trigger: CCGCGTGCTGAGCATAAATCGAAATGCGGTGGGCAAGCACTTTGACCTGATGATCGGCGACACGAGGACGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 72 bp CTCAGCACGCGGTGCTGGCCATCCTCGGCAAAAGTTTaGTTGAGTAAGGCATACAGCATGGCTTCCGTGATA +
Preference number: 4 (lower is better)
Translates to: LSTRCWPSSAKV*LSKAYSMASVI
Trigger: TATCACGGAAGCCATGCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
CDS-3UTR GCA 90 bp TTCACTAGCTCCCTCCCACTCGTCCTCGTGTCGCCGATCATCAGGTCAAAGTGCGTCAAGGTGAGCCCATaGAATTCTTCGAGTACCAAA +
Preference number: 4 (lower is better)
Translates to: FTSSLPLVLVSPIIRSKCVKVSP*NSSSTK
Trigger: TTTGGTACTCGAAGAATTGCATGGGCTCACCTTGAC...GCACTTTGACCTGATGATCGGCGACACGAGGACGAGTGGGAGGGAGCTAGTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 72 bp AGCACGCGGTGCTGGCCATCCTCGGCAAAAGTTTTGTaGAGTAAGGCATACAGCATGGCTTCCGTGATAAGA +
Preference number: 4 (lower is better)
Translates to: STRCWPSSAKVL*SKAYSMASVIR
Trigger: TCTTATCACGGAAGCCATGCTGTATGCCTTACTCAACAAAACTTTTGCCGAGGATGGCCAGCACCGCGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
3UTR CAA 72 bp AATGAGTCATACAACTCTTCAATCCGGTATGAGCTCTaGACAACCTTCTGTCTGTACTGCACTAAGAGGTCC +
Preference number: 4 (lower is better)
Translates to: NESYNSSIRYEL*TTFCLYCTKRS
Trigger: GGACCTCTTAGTGCAGTACAGACAGAAGGTTGTCAAGAGCTCATACCGGATTGAAGAGTTGTATGACTCATT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
CDS CCA 90 bp ATGGATTCCCGGGCTCCTTTCCATCTGTATCACAAGCAGCAACACTaGCAACACGTTTCTCAGGTGCAGTGGATTTCCTCACAGAGCAGG +
Preference number: 5 (lower is better)
Translates to: MDSRAPFHLYHKQQH*QHVSQVQWISSQSR
Trigger: CCTGCTCTGTGAGGAAATCCACTGCACCTGAGAAACGTGTTGCCAGTGTTGCTGCTTGTGATACAGATGGAAAGGAGCCCGGGAATCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS TCA 90 bp CACTCAGTCTGCTGCCAGTCCAGCACAGTCGGTCTCCGGTCAAGGTaGGCCCATGCAATTCTTCGAGTACCAAAAACAATAGATACGATA +
Preference number: 5 (lower is better)
Translates to: HSVCCQSSTVGLRSR*AHAILRVPKTIDTI
Trigger: TATCGTATCTATTGTTTTTGGTACTCGAAGAATTGCATGGGCTCACCTTGACCGGAGACCGACTGTGCTGGACTGGCAGCAGACTGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
ENSMUST00000136996.2
CDS GCA 90 bp AGTTCTTTATCAGAAGCTGTATTCAGCACTTGTAAGATAGAAGCCTaGTGCTCCAGGGAGAAGAGCCTGTCCAATGGATTCCCGGGCTCC +
Preference number: 5 (lower is better)
Translates to: SSLSEAVFSTCKIEA*CSREKSLSNGFPGS
Trigger: GGAGCCCGGGAATCCATTGGACAGGCTCTTCTCCCTGGAGCAGCAGGCTTCTATCTTACAAGTGCTGAATACAGCTTCTGATAAAGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 90 bp TCTTTATCAGAAGCTGTATTCAGCACTTGTAAGATAGAAGCCTGCTaGTCCAGGGAGAAGAGCCTGTCCAATGGATTCCCGGGCTCCTTT +
Preference number: 5 (lower is better)
Translates to: SLSEAVFSTCKIEAC*SREKSLSNGFPGSF
Trigger: AAAGGAGCCCGGGAATCCATTGGACAGGCTCTTCTCCCTGGAGCAGCAGGCTTCTATCTTACAAGTGCTGAATACAGCTTCTGATAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 90 bp CTGCTGCCAGTCCAGCACAGTCGGTCTCCGGTCAAGGTGAGCCCATaGAATTCTTCGAGTACCAAAAACAATAGATACGATACTCTTAAC +
Preference number: 5 (lower is better)
Translates to: LLPVQHSRSPVKVSP*NSSSTKNNRYDTLN
Trigger: GTTAAGAGTATCGTATCTATTGTTTTTGGTACTCGAAGAATTGCATGGGCTCACCTTGACCGGAGACCGACTGTGCTGGACTGGCAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
ENSMUST00000136996.2
CDS TCA 90 bp GAGTACTCTGGGACTGGAAACCATCTCCTCCCTAAAAGGGAAACTTaGCTTATAATGTTCTCCTTGACAGTTAATACCCAAGCTTGTGCA +
Preference number: 5 (lower is better)
Translates to: EYSGTGNHLLPKRET*LIMFSLTVNTQACA
Trigger: TGCACAAGCTTGGGTATTAACTGTCAAGGAGAACATTATAAGTCAAGTTTCCCTTTTAGGGAGGAGATGGTTTCCAGTCCCAGAGTACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131601.2
CDS CCA 90 bp ACTTCTCCTGTGACTTTTTCCTCCGTCTGTTCTCCGGACAGAGAATaGAGTTACAAACTTCAACAGCAGTTTTATATTGGATCAAGGGCA +
Preference number: 5 (lower is better)
Translates to: TSPVTFSSVCSPDRE*SYKLQQQFYIGSRA
Trigger: TGCCCTTGATCCAATATAAAACTGCTGTTGAAGTTTGTAACTCCATTCTCTGTCCGGAGAACAGACGGAGGAAAAAGTCACAGGAGAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS TCA 90 bp GTTTTATATTGGATCAAGGGCACGTCTATCAAATTCTCCAACCTCTaGAACGGCCCAAACTTCTTTCTGTGTTCTACAATATTGACGGAC +
Preference number: 5 (lower is better)
Translates to: VLYWIKGTSIKFSNL*NGPNFFLCSTILTD
Trigger: GTCCGTCAATATTGTAGAACACAGAAAGAAGTTTGGGCCGTTTCAGAGGTTGGAGAATTTGATAGACGTGCCCTTGATCCAATATAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 90 bp TGCAATTCTTCGAGTACCAAAAACAATAGATACGATACTCTTAACTaGCTTAAGTCTCTCTTGCTCTACACCTGGCTTGATGAACTTTCT +
Preference number: 5 (lower is better)
Translates to: CNSSSTKNNRYDTLN*LKSLLLYTWLDELS
Trigger: AGAAAGTTCATCAAGCCAGGTGTAGAGCAAGAGAGACTTAAGGCAGTTAAGAGTATCGTATCTATTGTTTTTGGTACTCGAAGAATTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 90 bp TGCAATTCTTCGAGTACCAAAAACAATAGATACGATACTCTTAACTaGCTAAAGAAGAAGAACTTAAGTCTCTCTTGCTCTACACCTGGC +
Preference number: 5 (lower is better)
Translates to: CNSSSTKNNRYDTLN*LKKKNLSLSCSTPG
Trigger: GCCAGGTGTAGAGCAAGAGAGACTTAAGTTCTTCTTCTTTAGGCAGTTAAGAGTATCGTATCTATTGTTTTTGGTACTCGAAGAATTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136996.2
CDS CCA 72 bp AGAAGCCTGCTGCTCCAGGGAGAAGAGCCTGTCCAATaGATTCCCGGGCTCCTTTCCATCTGTATCACAAGC +
Preference number: 6 (lower is better)
Translates to: RSLLLQGEEPVQ*IPGLLSICITS
Trigger: GCTTGTGATACAGATGGAAAGGAGCCCGGGAATCCATTGGACAGGCTCTTCTCCCTGGAGCAGCAGGCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 72 bp GAAGCTGTATTCAGCACTTGTAAGATAGAAGCCTGCTaGTCCAGGGAGAAGAGCCTGTCCAATGGATTCCCG +
Preference number: 6 (lower is better)
Translates to: EAVFSTCKIEAC*SREKSLSNGFP
Trigger: CGGGAATCCATTGGACAGGCTCTTCTCCCTGGAGCAGCAGGCTTCTATCTTACAAGTGCTGAATACAGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 72 bp TCAGAAGCTGTATTCAGCACTTGTAAGATAGAAGCCTaGTGCTCCAGGGAGAAGAGCCTGTCCAATGGATTC +
Preference number: 6 (lower is better)
Translates to: SEAVFSTCKIEA*CSREKSLSNGF
Trigger: GAATCCATTGGACAGGCTCTTCTCCCTGGAGCAGCAGGCTTCTATCTTACAAGTGCTGAATACAGCTTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 72 bp GTCCAGCACAGTCGGTCTCCGGTCAAGGTGAGCCCATaGAATTCTTCGAGTACCAAAAACAATAGATACGAT +
Preference number: 6 (lower is better)
Translates to: VQHSRSPVKVSP*NSSSTKNNRYD
Trigger: ATCGTATCTATTGTTTTTGGTACTCGAAGAATTGCATGGGCTCACCTTGACCGGAGACCGACTGTGCTGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
ENSMUST00000136996.2
CDS CAA 90 bp CTCCGGACAGAGAATGGAGTTACAAACTTCAACAGCAGTTTTATATaGGATCAAGGGCACGTCTATCAAATTCTCCAACCTCTGAAACGG +
Preference number: 6 (lower is better)
Translates to: LRTENGVTNFNSSFI*DQGHVYQILQPLKR
Trigger: CCGTTTCAGAGGTTGGAGAATTTGATAGACGTGCCCTTGATCCAATATAAAACTGCTGTTGAAGTTTGTAACTCCATTCTCTGTCCGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS TCA 72 bp TGGATCAAGGGCACGTCTATCAAATTCTCCAACCTCTaGAACGGCCCAAACTTCTTTCTGTGTTCTACAATA +
Preference number: 6 (lower is better)
Translates to: WIKGTSIKFSNL*NGPNFFLCSTI
Trigger: TATTGTAGAACACAGAAAGAAGTTTGGGCCGTTTCAGAGGTTGGAGAATTTGATAGACGTGCCCTTGATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS GCA 72 bp ATAGATACGATACTCTTAACTGCCTTAAGTCTCTCTTaGTCTACACCTGGCTTGATGAACTTTCTCAGCAGC +
Preference number: 6 (lower is better)
Translates to: IDTILLTALSLS*STPGLMNFLSS
Trigger: GCTGCTGAGAAAGTTCATCAAGCCAGGTGTAGAGCAAGAGAGACTTAAGGCAGTTAAGAGTATCGTATCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS TCA 72 bp GGGACTGGAAACCATCTCCTCCCTAAAAGGGAAACTTaGCTTATAATGTTCTCCTTGACAGTTAATACCCAA +
Preference number: 6 (lower is better)
Translates to: GTGNHLLPKRET*LIMFSLTVNTQ
Trigger: TTGGGTATTAACTGTCAAGGAGAACATTATAAGTCAAGTTTCCCTTTTAGGGAGGAGATGGTTTCCAGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131601.2
CDS GCA 72 bp TCGAGTACCAAAAACAATAGATACGATACTCTTAACTaGCTTAAGTCTCTCTTGCTCTACACCTGGCTTGAT +
Preference number: 6 (lower is better)
Translates to: SSTKNNRYDTLN*LKSLLLYTWLD
Trigger: ATCAAGCCAGGTGTAGAGCAAGAGAGACTTAAGGCAGTTAAGAGTATCGTATCTATTGTTTTTGGTACTCGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2
CDS CAA 72 bp GAGAATGGAGTTACAAACTTCAACAGCAGTTTTATATaGGATCAAGGGCACGTCTATCAAATTCTCCAACCT +
Preference number: 6 (lower is better)
Translates to: ENGVTNFNSSFI*DQGHVYQILQP
Trigger: AGGTTGGAGAATTTGATAGACGTGCCCTTGATCCAATATAAAACTGCTGTTGAAGTTTGTAACTCCATTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050207.10
ENSMUST00000131601.2