Pregenerated sensors for TEDDM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090356Ensembl transcript IDs: ENSMUST00000170665.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTaGTGTGGACTCCAAGATGTGCATGCACACTCGAGACGGCTGCTG | + |
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Preference number: 1 (lower is better) Translates to: GLFEDKEARSWDGEL*CGLQDVHAHSRRLL Trigger: CAGCAGCCGTCTCGAGTGTGCATGCACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| 3UTR GCA 72 bp | GAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTaGTGTGGACTCCAAGATGTGCATGCACACTCGAGA | + |
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Preference number: 3 (lower is better) Translates to: EDKEARSWDGEL*CGLQDVHAHSR Trigger: TCTCGAGTGTGCATGCACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| 3UTR CCA 72 bp | CTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTaGGATGGAGAGCTGTGCTGTGGACTCCAAGATGTG | + |
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Preference number: 3 (lower is better) Translates to: LQGLFEDKEARS*DGELCCGLQDV Trigger: CACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR TCA 90 bp | GATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGATGTGGTGCCATCCAGCTCTTaGGGACCCAGAGTGGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: DKEARSWDGELCCGLQDVVPSSS*GPRVGH Trigger: ATGCCCCACTCTGGGTCCTCAAGAGCTGGATGGCAC...CACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | GATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGATGTGCTTCACACTCCAAGGTaGCCGTTGTGCCTGGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: DKEARSWDGELCCGLQDVLHTPR*PLCLAH Trigger: GTGAGCCAGGCACAACGGGCACCTTGGAGTGTGAAG...CACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR TCA 90 bp | GATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGATGTGCCCAGATCTCCACAGTaGGCAGCAGAGCAAGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: DKEARSWDGELCCGLQDVPRSPQ*AAEQAR Trigger: TCTTGCTTGCTCTGCTGCTCACTGTGGAGATCTGGG...CACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGGTCCGTGGGGTTGTCTaGCCTCCAGGGCTGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: PQSYKVYLRIRKLDPGMEVRGVV*PPGLSS Trigger: ACTGGACAGCCCTGGAGGGCAGACAACCCCACGGAC...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CCA 90 bp | TTGAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGGGTGCCCGTTGTGCCTaGCTCACAATGTCTGCTATG | + |
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Preference number: 4 (lower is better) Translates to: LRIRKLDPGMESCAVDSKGARCA*LTMSAM Trigger: CATAGCAGACATTGTGAGCCAGGCACAACGGGCACC...CTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR TCA 90 bp | CAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCGGAGCAAGGGGTGCTTaGGCATCCTCTGTTTCCGGA | + |
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Preference number: 4 (lower is better) Translates to: QSYKVYLRIRKLDPGMESGARGA*ASSVSG Trigger: TCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCC...GCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | TTGAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGAGCCACCTTCACCACTaGTTCATAGGATACCGGCAA | + |
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Preference number: 4 (lower is better) Translates to: LRIRKLDPGMESCAVDSKSHLHH*FIGYRQ Trigger: TTGCCGGTATCCTATGAAGCAGTGGTGAAGGTGGCT...CTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | AGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTCCGGCAAAAACAGCCTaGAACCCAGCAGCTTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SYKVYLRIRKLDPGMESCPAKTA*NPAASL Trigger: CAAGGAAGCTGCTGGGTTGCAGGCTGTTTTTGCCGG...ACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | TTGAGGATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGCGACGAATAATAGATTaGATACATGAGGAGGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: LRIRKLDPGMESCAVDSKRRIID*IHEEAK Trigger: CTTGGCCTCCTCATGTATGCAATCTATTATTCGTCG...CTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATCCTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CCA 90 bp | AGGAGTTATCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTACCCAGCAGCTTCCTTaGGAGCAAGGGGTGCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: RSYPQSYKVYLRIRKLDPTQQLP*EQGVLE Trigger: CTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGT...AGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGATAACTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR TCA 90 bp | AGGAGTTATCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGCTCCCAGTTGTCCTTaGAAACAAACAGCCGCCGAG | + |
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Preference number: 4 (lower is better) Translates to: RSYPQSYKVYLRIRKLDPAPSCP*KQTAAE Trigger: CTCGGCGGCTGTTTGTTTTCAAGGACAACTGGGAGC...AGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGATAACTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | AGGAGTTATCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTCACACCTCCATCCTGTaGCACAGCTTCCGCATTGAG | + |
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Preference number: 4 (lower is better) Translates to: RSYPQSYKVYLRIRKLDPHTSIL*HSFRIE Trigger: CTCAATGCGGAAGCTGTGGCACAGGATGGAGGTGTG...AGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGATAACTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR TCA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGCCACAGCTTCCGCATTaGGCTTTTCTAATTCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: PQSYKVYLRIRKLDPGMEPQLPH*AFLILH Trigger: GTGAAGAATTAGAAAAGCTCAATGCGGAAGCTGTGG...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGGGATATCATCAGCAGTaGCACCACATAGAAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: PQSYKVYLRIRKLDPGMEGYHQQ*HHIESQ Trigger: CTGACTTTCTATGTGGTGGCACTGCTGATGATATCC...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGCCAAACATGGTTACATaGTCCCAGTTGTCCTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: PQSYKVYLRIRKLDPGMEPNMVT*SQLSLK Trigger: TTTCAAGGACAACTGGGAGCATGTAACCATGTTTGG...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR TCA 90 bp | AGGAGTTATCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTAATAGATTGCATACATaGGGAGGCCAAGTCCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: RSYPQSYKVYLRIRKLDPNRLHT*GGQVLA Trigger: TGCCAGGACTTGGCCTCCTCATGTATGCAATCTATT...AGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGATAACTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | TCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGATACATCTCACAGATCTaGAACATCCAGGTGCTTAAC | + |
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Preference number: 4 (lower is better) Translates to: SSELQGLFEDKEARSWDGYISQI*NIQVLN Trigger: GTTAAGCACCTGGATGTTGCAGATCTGTGAGATGTA...TCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR GCA 90 bp | AGGAGTTATCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGAAAATGGTTATGAATaGCAGGTCCGTGGGGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: RSYPQSYKVYLRIRKLDPENGYE*QVRGVV Trigger: GACAACCCCACGGACCTGGCATTCATAACCATTTTC...AGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGATAACTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CCA 90 bp | TCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGACTTTTGTTCTCAATATaGGATATCATCAGCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: SSELQGLFEDKEARSWDGLLFSI*DIISSA Trigger: GGCACTGCTGATGATATCCCATATTGAGAACAAAAG...TCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS TCA 90 bp | AAAACAGCCTGCAACCCAGCAGCTTCCTTGGGAGCAAGGGGTGCTTaGGCATCCTCTGTTTCCGGAGCAAGGCCAAGGACATTAGCGACG | + |
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Preference number: 5 (lower is better) Translates to: KTACNPAASLGARGA*ASSVSGARPRTLAT Trigger: CGTCGCTAATGTCCTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCAGGCTGTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 90 bp | GGCAAAAACAGCCTGCAACCCAGCAGCTTCCTTGGGAGCAAGGGGTaGTTGAGCATCCTCTGTTTCCGGAGCAAGGCCAAGGACATTAGC | + |
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Preference number: 5 (lower is better) Translates to: GKNSLQPSSFLGSKG*LSILCFRSKAKDIS Trigger: GCTAATGTCCTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCAGGCTGTTTTTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CAA 90 bp | TCCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGGGAGCAAGGGGTGCTaGAGCATCCTCTGTTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: SSELQGLFEDKEARSWDGGSKGC*SILCFR Trigger: CCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCC...TCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CAA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGACTCCAAGGTGCCCGTaGTGCCTGGCTCACAATGTC | + |
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Preference number: 5 (lower is better) Translates to: PQSYKVYLRIRKLDPGMETPRCP*CLAHNV Trigger: GACATTGTGAGCCAGGCACAACGGGCACCTTGGAGT...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS TCA 90 bp | GGAGCAAGGCCAAGGACATTAGCGACGAATAATAGATTGCATACATaGGGAGGCCAAGTCCTGGCAACAGGTGTCCTTCAAAGGTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: GARPRTLATNNRLHT*GGQVLATGVLQRFP Trigger: TGGGAACCTTTGAAGGACACCTGTTGCCAGGACTTGGCCTCCTCATGTATGCAATCTATTATTCGTCGCTAATGTCCTTGGCCTTGCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 90 bp | CAGCTTCACACTCCAAGGTGCCCGTTGTGCCTGGCTCACAATGTCTaGTATGCCACTGAGAATAAAGAACCCAAACATGGTTACATGCTC | + |
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Preference number: 5 (lower is better) Translates to: QLHTPRCPLCLAHNV*YATENKEPKHGYML Trigger: GAGCATGTAACCATGTTTGGGTTCTTTATTCTCAGTGGCATAGCAGACATTGTGAGCCAGGCACAACGGGCACCTTGGAGTGTGAAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 90 bp | GTATTCACAAACAGTGGCAAAAGCAGGAATAGCCACCTTCACCACTaGTTCATAGGATACCGGCAAAAACAGCCTGCAACCCAGCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: VFTNSGKSRNSHLHH*FIGYRQKQPATQQL Trigger: AAGCTGCTGGGTTGCAGGCTGTTTTTGCCGGTATCCTATGAAGCAGTGGTGAAGGTGGCTATTCCTGCTTTTGCCACTGTTTGTGAATAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CAA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGTGCTCCCAGTTGTCCTaGAAAACAAACAGCCGCCGA | + |
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Preference number: 5 (lower is better) Translates to: PQSYKVYLRIRKLDPGMECSQLS*KTNSRR Trigger: TCGGCGGCTGTTTGTTTTCAAGGACAACTGGGAGCA...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CAA 90 bp | GATAAGGAAGCTAGATCCTGGGATGGAGAGCTGTGCTGTGGACTCCAAGATGTGGCCACAGCTTCCGCATaGAGCTTTTCTAATTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: DKEARSWDGELCCGLQDVATASA*SFSNSS Trigger: TGAAGAATTAGAAAAGCTCAATGCGGAAGCTGTGGC...CACATCTTGGAGTCCACAGCACAGCTCTCCATCCCAGGATCTAGCTTCCTTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 90 bp | ATGTCTGCTATGCCACTGAGAATAAAGAACCCAAACATGGTTACATaGTCCCAGTTGTCCTTGAAAACAAACAGCCGCCGAGGGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: MSAMPLRIKNPNMVT*SQLSLKTNSRRGSF Trigger: GAAGGACCCTCGGCGGCTGTTTGTTTTCAAGGACAACTGGGAGCATGTAACCATGTTTGGGTTCTTTATTCTCAGTGGCATAGCAGACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 90 bp | GTGAGCAGCAGAGCAAGCAAGAAGGCAGGCAACACAAACAGAAGATaGACTCGAATCTCCAAGACGCTTTTGTTCTCAATATGGGATATC | + |
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Preference number: 5 (lower is better) Translates to: VSSRASKKAGNTNRR*TRISKTLLFSIWDI Trigger: GATATCCCATATTGAGAACAAAAGCGTCTTGGAGATTCGAGTGCATCTTCTGTTTGTGTTGCCTGCCTTCTTGCTTGCTCTGCTGCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS-3UTR CAA 90 bp | CCTCAGAGCTACAAGGTTTATTTGAGGATAAGGAAGCTAGATCCTGGGATGGAGGTTACATGCTCCCAGTaGTCCTTGAAAACAAACAGC | + |
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Preference number: 5 (lower is better) Translates to: PQSYKVYLRIRKLDPGMEVTCSQ*SLKTNS Trigger: GCTGTTTGTTTTCAAGGACAACTGGGAGCATGTAAC...CTCCATCCCAGGATCTAGCTTCCTTATCCTCAAATAAACCTTGTAGCTCTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | GGCTTCAGCCGCGCGCTCCAGCTTCACACTCCAAGGTaGCCGTTGTGCCTGGCTCACAATGTCTGCTATGCC | + |
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Preference number: 6 (lower is better) Translates to: GFSRALQLHTPR*PLCLAHNVCYA Trigger: GGCATAGCAGACATTGTGAGCCAGGCACAACGGGCACCTTGGAGTGTGAAGCTGGAGCGCGCGGCTGAAGCC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | AGCCTGCAACCCAGCAGCTTCCTTGGGAGCAAGGGGTaGTTGAGCATCCTCTGTTTCCGGAGCAAGGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: SLQPSSFLGSKG*LSILCFRSKAK Trigger: CTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCAGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 72 bp | CTGCAACCCAGCAGCTTCCTTGGGAGCAAGGGGTGCTaGAGCATCCTCTGTTTCCGGAGCAAGGCCAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: LQPSSFLGSKGC*SILCFRSKAKD Trigger: GTCCTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS TCA 72 bp | TGCAACCCAGCAGCTTCCTTGGGAGCAAGGGGTGCTTaGGCATCCTCTGTTTCCGGAGCAAGGCCAAGGACA | + |
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Preference number: 6 (lower is better) Translates to: CNPAASLGARGA*ASSVSGARPRT Trigger: TGTCCTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 90 bp | AAAAACAGCCTGCAACCCAGCAGCTTCCTTGGGAGCAAGGGGTGCTaGAGCATCCTCTGTTTCCGGAGCAAGGCCAAGGACATTAGCGAC | + |
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Preference number: 6 (lower is better) Translates to: KNSLQPSSFLGSKGC*SILCFRSKAKDISD Trigger: GTCGCTAATGTCCTTGGCCTTGCTCCGGAAACAGAGGATGCTCAAGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCAGGCTGTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS TCA 72 bp | AGAGTGGGGCATTGTCAGGGACCCAGATCTCCACAGTaGGCAGCAGAGCAAGCAAGAAGGCAGGCAACACAA | + |
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Preference number: 6 (lower is better) Translates to: RVGHCQGPRSPQ*AAEQARRQATQ Trigger: TTGTGTTGCCTGCCTTCTTGCTTGCTCTGCTGCTCACTGTGGAGATCTGGGTCCCTGACAATGCCCCACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | TCACCACTGCTTCATAGGATACCGGCAAAAACAGCCTaGAACCCAGCAGCTTCCTTGGGAGCAAGGGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SPLLHRIPAKTA*NPAASLGARGA Trigger: AGCACCCCTTGCTCCCAAGGAAGCTGCTGGGTTGCAGGCTGTTTTTGCCGGTATCCTATGAAGCAGTGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 90 bp | AGGTGCCAGCAGAAGAAAATGGTTATGAATGCCAGGTCCGTGGGGTaGTCTGCCCTCCAGGGCTGTCCAGTGAAAGGTATATACATCTCA | + |
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Preference number: 6 (lower is better) Translates to: RCQQKKMVMNARSVG*SALQGCPVKGIYIS Trigger: TGAGATGTATATACCTTTCACTGGACAGCCCTGGAGGGCAGACAACCCCACGGACCTGGCATTCATAACCATTTTCTTCTGCTGGCACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 72 bp | CAGAAGAAAATGGTTATGAATGCCAGGTCCGTGGGGTaGTCTGCCCTCCAGGGCTGTCCAGTGAAAGGTATA | + |
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Preference number: 6 (lower is better) Translates to: QKKMVMNARSVG*SALQGCPVKGI Trigger: TATACCTTTCACTGGACAGCCCTGGAGGGCAGACAACCCCACGGACCTGGCATTCATAACCATTTTCTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS TCA 72 bp | AGAACCCAAACATGGTTACATGCTCCCAGTTGTCCTTaGAAACAAACAGCCGCCGAGGGTCCTTCCAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: RTQTWLHAPSCP*KQTAAEGPSSL Trigger: TAGACTGGAAGGACCCTCGGCGGCTGTTTGTTTTCAAGGACAACTGGGAGCATGTAACCATGTTTGGGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | AACAGTGGCAAAAGCAGGAATAGCCACCTTCACCACTaGTTCATAGGATACCGGCAAAAACAGCCTGCAACC | + |
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Preference number: 6 (lower is better) Translates to: NSGKSRNSHLHH*FIGYRQKQPAT Trigger: GGTTGCAGGCTGTTTTTGCCGGTATCCTATGAAGCAGTGGTGAAGGTGGCTATTCCTGCTTTTGCCACTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | ACTCCAAGGTGCCCGTTGTGCCTGGCTCACAATGTCTaGTATGCCACTGAGAATAAAGAACCCAAACATGGT | + |
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Preference number: 6 (lower is better) Translates to: TPRCPLCLAHNV*YATENKEPKHG Trigger: ACCATGTTTGGGTTCTTTATTCTCAGTGGCATAGCAGACATTGTGAGCCAGGCACAACGGGCACCTTGGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | GAAAATGGTTATGAATGCCAGGTCCGTGGGGTTGTCTaGCCTCCAGGGCTGTCCAGTGAAAGGTATATACAT | + |
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Preference number: 6 (lower is better) Translates to: ENGYECQVRGVV*PPGLSSERYIH Trigger: ATGTATATACCTTTCACTGGACAGCCCTGGAGGGCAGACAACCCCACGGACCTGGCATTCATAACCATTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | GGCTGTCCAGTGAAAGGTATATACATCTCACAGATCTaGAACATCCAGGTGCTTAACACCAGTGCCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: GCPVKGIYISQI*NIQVLNTSAIQ Trigger: CTGGATGGCACTGGTGTTAAGCACCTGGATGTTGCAGATCTGTGAGATGTATATACCTTTCACTGGACAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CCA 72 bp | TCTAATTCTTCACTACTGGATTCCGTAAGACACCGCTaGTACCTAGCCCCGAGAGTCTTTGTCCAGGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: SNSSLLDSVRHR*YLAPRVFVQEE Trigger: TTCTTCCTGGACAAAGACTCTCGGGGCTAGGTACCAGCGGTGTCTTACGGAATCCAGTAGTGAAGAATTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 90 bp | ATGCCACTGAGAATAAAGAACCCAAACATGGTTACATGCTCCCAGTaGTCCTTGAAAACAAACAGCCGCCGAGGGTCCTTCCAGTCTATC | + |
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Preference number: 6 (lower is better) Translates to: MPLRIKNPNMVTCSQ*SLKTNSRRGSFQSI Trigger: GATAGACTGGAAGGACCCTCGGCGGCTGTTTGTTTTCAAGGACAACTGGGAGCATGTAACCATGTTTGGGTTCTTTATTCTCAGTGGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 90 bp | CTGAGAATAAAGAACCCAAACATGGTTACATGCTCCCAGTTGTCCTaGAAAACAAACAGCCGCCGAGGGTCCTTCCAGTCTATCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: LRIKNPNMVTCSQLS*KTNSRRGSFQSIIF Trigger: GAAGATGATAGACTGGAAGGACCCTCGGCGGCTGTTTGTTTTCAAGGACAACTGGGAGCATGTAACCATGTTTGGGTTCTTTATTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS TCA 72 bp | CCAAGGACATTAGCGACGAATAATAGATTGCATACATaGGGAGGCCAAGTCCTGGCAACAGGTGTCCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: PRTLATNNRLHT*GGQVLATGVLQ Trigger: TTGAAGGACACCTGTTGCCAGGACTTGGCCTCCTCATGTATGCAATCTATTATTCGTCGCTAATGTCCTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS GCA 72 bp | AGAGCAAGCAAGAAGGCAGGCAACACAAACAGAAGATaGACTCGAATCTCCAAGACGCTTTTGTTCTCAATA | + |
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Preference number: 6 (lower is better) Translates to: RASKKAGNTNRR*TRISKTLLFSI Trigger: TATTGAGAACAAAAGCGTCTTGGAGATTCGAGTGCATCTTCTGTTTGTGTTGCCTGCCTTCTTGCTTGCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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| CDS CAA 72 bp | ACAAACAGAAGATGCACTCGAATCTCCAAGACGCTTTaGTTCTCAATATGGGATATCATCAGCAGTGCCACC | + |
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Preference number: 6 (lower is better) Translates to: TNRRCTRISKTL*FSIWDIISSAT Trigger: GGTGGCACTGCTGATGATATCCCATATTGAGAACAAAAGCGTCTTGGAGATTCGAGTGCATCTTCTGTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170665.3 |
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