Pregenerated sensors for TEDDM1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043282Ensembl transcript IDs: ENSMUST00000055314.4
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCTAACTCAGAGCCCCATCAGTGCTGGAATCCCTGCGGACCTCTaGCCCTCTTTTCAGAGGTTCCCTGCCATTATCTTCCCATGGTGG | + |
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Preference number: 1 (lower is better) Translates to: WLTQSPISAGIPADL*PSFQRFPAIIFPWW Trigger: CCACCATGGGAAGATAATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTCCGCAGGGATTCCAGCACTGATGGGGCTCTGAGTTAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 90 bp | GAGCAGCTCCACTTTAGTTGGTCAACCCACCACTGTCACATTCCTTaGCTAACTCAGAGCCCCATCAGTGCTGGAATCCCTGCGGACCTC | + |
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Preference number: 1 (lower is better) Translates to: EQLHFSWSTHHCHIP*LTQSPISAGIPADL Trigger: GAGGTCCGCAGGGATTCCAGCACTGATGGGGCTCTGAGTTAGCCAAGGAATGTGACAGTGGTGGGTTGACCAACTAAAGTGGAGCTGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR TCA 90 bp | CACGGACGTAGGAGAGGCGCTACGGGGACCCAGATCAAGGGAGTATaGGAACTTGGAGGAAGAGTCCATTGTGATCATAACAGTATAGGA | + |
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Preference number: 1 (lower is better) Translates to: HGRRRGATGTQIKGV*ELGGRVHCDHNSIG Trigger: TCCTATACTGTTATGATCACAATGGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGGTCCCCGTAGCGCCTCTCCTACGTCCGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 90 bp | GACCTCTGCCCCTCTTTTCAGAGGTTCCCTGCCATTATCTTCCCATaGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTG | + |
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Preference number: 1 (lower is better) Translates to: DLCPSFQRFPAIIFP*WVVLVAHSSQYYSL Trigger: CAAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATAATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 90 bp | TGTACTATATGTCATGCTGTCTCTGCAGAGCAGCTCCACTTTAGTTaGTCAACCCACCACTGTCACATTCCTTGGCTAACTCAGAGCCCC | + |
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Preference number: 1 (lower is better) Translates to: CTICHAVSAEQLHFS*STHHCHIPWLTQSP Trigger: GGGGCTCTGAGTTAGCCAAGGAATGTGACAGTGGTGGGTTGACCAACTAAAGTGGAGCTGCTCTGCAGAGACAGCATGACATATAGTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR GCA 90 bp | TCCAGGGTCGTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTaGCCAAGGGAGCCCACAGGAGGAAGATGGAGTAGTGTATGTACC | + |
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Preference number: 1 (lower is better) Translates to: SRVVTFSKEQRVYYK*PREPTGGRWSSVCT Trigger: GGTACATACACTACTCCATCTTCCTCCTGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAACGACCCTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 90 bp | TTTTATGCCCTCAACAGTTATAGGGTCAATGACAGGCATAATGGTTaGGACTGTCATCCTCCAGGGTCGTTACTTTCAGCAAGGAACAAA | + |
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Preference number: 1 (lower is better) Translates to: FYALNSYRVNDRHNG*DCHPPGSLLSARNK Trigger: TTTGTTCCTTGCTGAAAGTAACGACCCTGGAGGATGACAGTCCCAACCATTATGCCTGTCATTGACCCTATAACTGTTGAGGGCATAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 90 bp | CATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTaGTGTCTGAAGACAGCTACAGTGTACTTAATTATAATCAATAAA | + |
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Preference number: 1 (lower is better) Translates to: HGGSQPSVMRSDALF*CLKTATVYLIIINK Trigger: TTTATTGATTATAATTAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR-3UTR CCA 90 bp | AGTGCTGGAATCCCTGCGGACCTCTGCCCCTCTTTTCAGAGGTTCCCTGCCATTGACAGGCATAATGGTTaGGACTGTCATCCTCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: SAGIPADLCPSFQRFPAIDRHNG*DCHPPG Trigger: CCCTGGAGGATGACAGTCCCAACCATTATGCCTGTC...AATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTCCGCAGGGATTCCAGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR-3UTR GCA 90 bp | CCCAGATCAAGGGAGTATGAGAACTTGGAGGAAGAGTCCATTGTGATCATAACAAGGGTATATTACAAGTaGCCAAGGGAGCCCACAGGA | + |
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Preference number: 2 (lower is better) Translates to: PRSREYENLEEESIVIITRVYYK*PREPTG Trigger: TCCTGTGGGCTCCCTTGGGCACTTGTAATATACCCT...TGTTATGATCACAATGGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR-3UTR CCA 90 bp | AACAAAACCTTCCCAAGAGAAAGACAAGGAAGGATGTGTCTGCCGCATGTGACAGCTGTGGTAAAAATGTaGCTGACAACAGGTTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: NKTFPRERQGRMCLPHVTAVVKM*LTTGLV Trigger: AACCAAACCTGTTGTCAGCCACATTTTTACCACAGC...TGTCACATGCGGCAGACACATCCTTCCTTGTCTTTCTCTTGGGAAGGTTTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR-3UTR CCA 90 bp | GGAAGAGTCCATTGTGATCATAACAGTATAGGAGAAATTGATGCTAGTTATAGAATTATCTTCCCATGGTaGGTAGTTCTTGTAGCCCAC | + |
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Preference number: 2 (lower is better) Translates to: GRVHCDHNSIGEIDASYRIIFPW*VVLVAH Trigger: GTGGGCTACAAGAACTACCCACCATGGGAAGATAAT...TCTATAACTAGCATCAATTTCTCCTATACTGTTATGATCACAATGGACTCTTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR TCA 72 bp | CAAGAGAAAGACAAGGAAGGATGTGTCTGCCGCATGTaGCACGGACGTAGGAGAGGCGCTACGGGGACCCAG | + |
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Preference number: 3 (lower is better) Translates to: QEKDKEGCVCRM*HGRRRGATGTQ Trigger: CTGGGTCCCCGTAGCGCCTCTCCTACGTCCGTGTCACATGCGGCAGACACATCCTTCCTTGTCTTTCTCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR GCA 72 bp | CAGAGCCCCATCAGTGCTGGAATCCCTGCGGACCTCTaGCCCTCTTTTCAGAGGTTCCCTGCCATTATCTTC | + |
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Preference number: 3 (lower is better) Translates to: QSPISAGIPADL*PSFQRFPAIIF Trigger: GAAGATAATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTCCGCAGGGATTCCAGCACTGATGGGGCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR TCA 72 bp | AGGAGAGGCGCTACGGGGACCCAGATCAAGGGAGTATaGGAACTTGGAGGAAGAGTCCATTGTGATCATAAC | + |
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Preference number: 3 (lower is better) Translates to: RRGATGTQIKGV*ELGGRVHCDHN Trigger: GTTATGATCACAATGGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGGTCCCCGTAGCGCCTCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR TCA 72 bp | GACATGCAAAAGAAATTAGGTAACAATAGGGGCTGGTaGGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC | + |
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Preference number: 3 (lower is better) Translates to: DMQKKLGNNRGW*DGSVGKSTRLL Trigger: GAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTATTGTTACCTAATTTCTTTTGCATGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 72 bp | TGTCATGCTGTCTCTGCAGAGCAGCTCCACTTTAGTTaGTCAACCCACCACTGTCACATTCCTTGGCTAACT | + |
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Preference number: 3 (lower is better) Translates to: CHAVSAEQLHFS*STHHCHIPWLT Trigger: AGTTAGCCAAGGAATGTGACAGTGGTGGGTTGACCAACTAAAGTGGAGCTGCTCTGCAGAGACAGCATGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 72 bp | CCCTCTTTTCAGAGGTTCCCTGCCATTATCTTCCCATaGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATAC | + |
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Preference number: 3 (lower is better) Translates to: PSFQRFPAIIFP*WVVLVAHSSQY Trigger: GTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATAATGGCAGGGAACCTCTGAAAAGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR GCA 72 bp | GTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTaGCCAAGGGAGCCCACAGGAGGAAGATGGAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: VTFSKEQRVYYK*PREPTGGRWSS Trigger: ACTACTCCATCTTCCTCCTGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 72 bp | CTCAACAGTTATAGGGTCAATGACAGGCATAATGGTTaGGACTGTCATCCTCCAGGGTCGTTACTTTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LNSYRVNDRHNG*DCHPPGSLLSA Trigger: TGCTGAAAGTAACGACCCTGGAGGATGACAGTCCCAACCATTATGCCTGTCATTGACCCTATAACTGTTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 72 bp | TCTTTTCAGAGGTTCCCTGCCATTATCTTCCCATGGTaGGTAGTTCTTGTAGCCCACTCTTCTCAATACTAC | + |
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Preference number: 3 (lower is better) Translates to: SFQRFPAIIFPW*VVLVAHSSQYY Trigger: GTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATAATGGCAGGGAACCTCTGAAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR TCA 72 bp | GAAATATATATCACCACTAAGCACTTCGCTTTAGTCTaGTTAGAGGTCAGGAATAAGAAGTATGTAGGGGTT | + |
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Preference number: 3 (lower is better) Translates to: EIYITTKHFALV*LEVRNKKYVGV Trigger: AACCCCTACATACTTCTTATTCCTGACCTCTAATCAGACTAAAGCGAAGTGCTTAGTGGTGATATATATTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CCA 72 bp | TTATACACGTGTGGGATTCTTGTAATTCCATCCAAATaGAGTAGTGAATTGTACTATATGTCATGCTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: LYTCGILVIPSK*SSELYYMSCCL Trigger: GAGACAGCATGACATATAGTACAATTCACTACTCCATTTGGATGGAATTACAAGAATCCCACACGTGTATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | GAGGCGCTACGGGGACCCAGATCAAGGGAGTATGAGAACTTGGAGGAAGAGTCCCAGCTCCACCCCAGATaGTTCTTTAACGTGAGACAC | + |
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Preference number: 4 (lower is better) Translates to: EALRGPRSREYENLEEESQLHPR*FFNVRH Trigger: GTGTCTCACGTTAAAGAATCATCTGGGGTGGAGCTG...GGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGGTCCCCGTAGCGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | CACCCGACTGCTCTTCCTAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGATGAACATGGTGAGGTaGTGCCACTCCTTGGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: HPTALPKVQSSNPSNHMVMNMVR*CHSLGY Trigger: GTACCCCAAGGAGTGGCAGCACCTCACCATGTTCAT...CACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTAGGAAGAGCAGTCGGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | GGACCTCTGCCCCTCTTTTCAGAGGTTCCCTGCCATTATCTTCCCATGGTGGGTGCGTTGATCATCACATaGCAGCAGAAGAAGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GPLPLFSEVPCHYLPMVGALIIT*QQKKVV Trigger: CACCACCTTCTTCTGCTGGCATGTGATGATCAACGC...ACCCACCATGGGAAGATAATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | GTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTGCCCAAGGGAGCCCACAAGGAGCCCAGAGCTCTaGCGTCAACACCAGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: VTFSKEQRVYYKCPREPTRSPEL*RQHQHQ Trigger: CTGATGCTGGTGTTGACGGCAGAGCTCTGGGCTCCT...TGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | GGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTGTCCTCGCTCTCTCTACCCAGATGAGTCACTaGCTATCACGGCCTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GSSCSPLFSILLLVLALSTQMSH*LSRPWR Trigger: TCTCCAAGGCCGTGATAGTCAGTGACTCATCTGGGT...AGAGAGAGCGAGGACAAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | GTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTGCCCAAGGGAGCCCACAAAGATGAGGAGAGAGTaGACCTGCAGCTCCACCCCA | + |
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Preference number: 4 (lower is better) Translates to: VTFSKEQRVYYKCPREPTKMRRE*TCSSTP Trigger: TGGGGTGGAGCTGCAGGTTCACTCTCTCCTCATCTT...TGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | AACAAAACCTTCCCAAGAGAAAGACAAGGAAGGATGTGTCTGCCGCATGTGACAAGAATGAAGGCTGCCTaGATCAGCCACGAGCCCATC | + |
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Preference number: 4 (lower is better) Translates to: NKTFPRERQGRMCLPHVTRMKAA*ISHEPI Trigger: GATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCT...TGTCACATGCGGCAGACACATCCTTCCTTGTCTTTCTCTTGGGAAGGTTTTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | GGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTGTCCTCGCTCTCTCTAAAGAGAATGAAGGCTaGCTGAATCAGCCACGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GSSCSPLFSILLLVLALSKENEG*LNQPRA Trigger: GGCTCGTGGCTGATTCAGGCAGCCTTCATTCTCTTT...AGAGAGAGCGAGGACAAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | GTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTGCCCAAGGGAGCCCACATTTGTCCTGCTGCTCTaGCTCCTGCAGCAGCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: VTFSKEQRVYYKCPREPTFVLLL*LLQQLV Trigger: TACAAGCTGCTGCAGGAGGCAGAGCAGCAGGACAAA...TGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | GTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTGCCCAAGGGAGCCCACAGATGATTCTTTAACGTaGGACACCAGCAGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VTFSKEQRVYYKCPREPTDDSLT*DTSSSR Trigger: CCTGCTGCTGCTGGTGTCTCACGTTAAAGAATCATC...TGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | TATCTTCCCATGGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTGGAACACCACCAAGATaGGGAGAGAGTGAACCTGCA | + |
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Preference number: 4 (lower is better) Translates to: YLPMVGSSCSPLFSILLLGTPPR*GESEPA Trigger: TGCAGGTTCACTCTCTCCTCATCTTGGTGGTGTTCC...AAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | GGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTGTCCTCGCTCTCTCTCTTGTAGAAGGTTCCTaGAGAGCTCTCCTGATACAG | + |
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Preference number: 4 (lower is better) Translates to: GSSCSPLFSILLLVLALSLVEGS*RALLIQ Trigger: CTGTATCAGGAGAGCTCTTCAGGAACCTTCTACAAG...AGAGAGAGCGAGGACAAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | AACAAAACCTTCCCAAGAGAAAGACAAGGAAGGATGTGTCTGCCGCATGTGACAACAGGGAGAGATCTTTaGAAGGAGAGGAGCCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: NKTFPRERQGRMCLPHVTTGRDL*KERSLV Trigger: AACCAGGCTCCTCTCCTTTCAAAGATCTCTCCCTGT...TGTCACATGCGGCAGACACATCCTTCCTTGTCTTTCTCTTGGGAAGGTTTTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | GTTACTTTCAGCAAGGAACAAAGGGTATATTACAAGTGCCCAAGGGAGCCCACAAACATGGTGAGGTGCTaGCACTCCTTGGGGTACATA | + |
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Preference number: 4 (lower is better) Translates to: VTFSKEQRVYYKCPREPTNMVRC*HSLGYI Trigger: TATGTACCCCAAGGAGTGGCAGCACCTCACCATGTT...TGTGGGCTCCCTTGGGCACTTGTAATATACCCTTTGTTCCTTGCTGAAAGTAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | TATCTTCCCATGGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTTTATCTTTGTCCTGCTaGTCTGCCTCCTGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: YLPMVGSSCSPLFSILLLLSLSC*SASCSS Trigger: GCTGCTGCAGGAGGCAGAGCAGCAGGACAAAGATAA...AAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | CCCAGATCAAGGGAGTATGAGAACTTGGAGGAAGAGTCCATTGTGATCATAACATGGTTATCTTTGTCCTaGTGCTCTGCCTCCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PRSREYENLEEESIVIITWLSLS*CSASCS Trigger: GCTGCAGGAGGCAGAGCAGCAGGACAAAGATAACCA...TGTTATGATCACAATGGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | TATCTTCCCATGGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTGCACGTTCTTGCTTATaGCGTCTGCACAACCATCGA | + |
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Preference number: 4 (lower is better) Translates to: YLPMVGSSCSPLFSILLLARSCL*RLHNHR Trigger: TCGATGGTTGTGCAGACGTCATAAGCAAGAACGTGC...AAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CCA 90 bp | AACAAAACCTTCCCAAGAGAAAGACAAGGAAGGATGTGTCTGCCGCATGTGACACAGGAAGCCAGAGACTaGTCTAAAGAGAATGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: NKTFPRERQGRMCLPHVTQEARD*SKENEG Trigger: GCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCTG...TGTCACATGCGGCAGACACATCCTTCCTTGTCTTTCTCTTGGGAAGGTTTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CCA 90 bp | CCCAGATCAAGGGAGTATGAGAACTTGGAGGAAGAGTCCATTGTGATCATAACAGAAAGGAGAGGAGCCTaGTTATCTTTGTCCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PRSREYENLEEESIVIITERRGA*LSLSCC Trigger: GCAGCAGGACAAAGATAACCAGGCTCCTCTCCTTTC...TGTTATGATCACAATGGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | ATGAAACAAAACCTTCCCAAGAGAAAGACAAGGAAGGATGTGTCTGCCGCATGTTCTATCATCCTGAGGTaGAACATTTCAGGAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: MKQNLPKRKTRKDVSAACSIILR*NISGAQ Trigger: CTGGGCTCCTGAAATGTTTCACCTCAGGATGATAGA...ACATGCGGCAGACACATCCTTCCTTGTCTTTCTCTTGGGAAGGTTTTGTTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR TCA 90 bp | TATCTTCCCATGGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTACATGCATAAGGCGTTaGTCATCACATGCCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: YLPMVGSSCSPLFSILLLTCIRR*SSHASR Trigger: TCTGCTGGCATGTGATGATCAACGCCTTATGCATGT...AAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR GCA 90 bp | TATCTTCCCATGGTGGGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTCTTGGAGATCAGTGTTaGCTGATACAGTCCATAAAA | + |
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Preference number: 4 (lower is better) Translates to: YLPMVGSSCSPLFSILLLLGDQC*LIQSIK Trigger: TTTTATGGACTGTATCAGGCAACACTGATCTCCAAG...AAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACCCACCATGGGAAGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| 3UTR CAA 72 bp | GGGATTCTTGTAATTCCATCCAAATGGAGTAGTGAATaGTACTATATGTCATGCTGTCTCTGCAGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GILVIPSKWSSE*YYMSCCLCRAA Trigger: AGCTGCTCTGCAGAGACAGCATGACATATAGTACAATTCACTACTCCATTTGGATGGAATTACAAGAATCCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CAA 90 bp | GGACCTCTGCCCCTCTTTTCAGAGGTTCCCTGCCATTATCTTCCCATGGTGGGTGGAGCCTGGTTATCTTaGTCCTGCTGCTCTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: GPLPLFSEVPCHYLPMVGGAWLS*SCCSAS Trigger: GGAGGCAGAGCAGCAGGACAAAGATAACCAGGCTCC...ACCCACCATGGGAAGATAATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS GCA 90 bp | ACGTCTGCACAACCATCGAGGGCGAGGAGGATGAACATGGTGAGGTaGTGCCACTCCTTGGGGTACATAAACCTTGGAGGCATCCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: TSAQPSRARRMNMVR*CHSLGYINLGGIPL Trigger: CAAAGGGATGCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCATCCTCCTCGCCCTCGATGGTTGTGCAGACGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS TCA 90 bp | CACGAGCCCATCATCAGGAACAGGAAGGTCTCTATCATCCTGAGGTaGAACATTTCAGGAGCCCAGAGCTCTGCCGTCAACACCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: HEPIIRNRKVSIILR*NISGAQSSAVNTSI Trigger: GATGCTGGTGTTGACGGCAGAGCTCTGGGCTCCTGAAATGTTTCACCTCAGGATGATAGAGACCTTCCTGTTCCTGATGATGGGCTCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS TCA 90 bp | TCAGCCACGAGCCCATCATCAGGAACAGGAAGGTCTCTATCATCCTaGGGTGAAACATTTCAGGAGCCCAGAGCTCTGCCGTCAACACCA | + |
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Preference number: 5 (lower is better) Translates to: SATSPSSGTGRSLSS*GETFQEPRALPSTP Trigger: TGGTGTTGACGGCAGAGCTCTGGGCTCCTGAAATGTTTCACCTCAGGATGATAGAGACCTTCCTGTTCCTGATGATGGGCTCGTGGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS GCA 90 bp | TCTGCACAACCATCGAGGGCGAGGAGGATGAACATGGTGAGGTGCTaGCACTCCTTGGGGTACATAAACCTTGGAGGCATCCCTTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: SAQPSRARRMNMVRC*HSLGYINLGGIPLL Trigger: TAACAAAGGGATGCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCATCCTCCTCGCCCTCGATGGTTGTGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS GCA 90 bp | ATCCTCCCACAGGAAGCCAGAGACTGGTCTAAAGAGAATGAAGGCTaGCTGAATCAGCCACGAGCCCATCATCAGGAACAGGAAGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: ILPQEARDWSKENEG*LNQPRAHHQEQEGL Trigger: GAGACCTTCCTGTTCCTGATGATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCTGTGGGAGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CAA 90 bp | AGTGCTGGAATCCCTGCGGACCTCTGCCCCTCTTTTCAGAGGTTCCCTGCCATTAACATGCATAAGGCGTaGATCATCACATGCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SAGIPADLCPSFQRFPAINMHKA*IITCQQ Trigger: CTGCTGGCATGTGATGATCAACGCCTTATGCATGTT...AATGGCAGGGAACCTCTGAAAAGAGGGGCAGAGGTCCGCAGGGATTCCAGCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS TCA 90 bp | CACCACCAAGATGAGGAGAGAGTGAACCTGCAGCTCCACCCCAGATaGTTCTTTAACGTGAGACACCAGCAGCAGCAGGAGCACATAGAA | + |
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Preference number: 5 (lower is better) Translates to: HHQDEERVNLQLHPR*FFNVRHQQQQEHIE Trigger: TTCTATGTGCTCCTGCTGCTGCTGGTGTCTCACGTTAAAGAATCATCTGGGGTGGAGCTGCAGGTTCACTCTCTCCTCATCTTGGTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS CCA 90 bp | CATGATGTCACTGATGTCACCATCCTCCCACAGGAAGCCAGAGACTaGTCTAAAGAGAATGAAGGCTGCCTGAATCAGCCACGAGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: HDVTDVTILPQEARD*SKENEGCLNQPRAH Trigger: ATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCTGTGGGAGGATGGTGACATCAGTGACATCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CAA 90 bp | CACCCGACTGCTCTTCCTAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGCCTTGGAGATCAGTGTaGCCTGATACAGTCCATAAA | + |
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Preference number: 5 (lower is better) Translates to: HPTALPKVQSSNPSNHMVPWRSV*PDTVHK Trigger: TTTATGGACTGTATCAGGCAACACTGATCTCCAAGG...CACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTAGGAAGAGCAGTCGGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CAA 90 bp | GGTAGTTCTTGTAGCCCACTCTTCTCAATACTACTCCTTGTCCTCGCTCTCTCTCACAGGGAGAGATCTTaGAAAGGAGAGGAGCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: GSSCSPLFSILLLVLALSHRERS*KGEEPG Trigger: ACCAGGCTCCTCTCCTTTCAAAGATCTCTCCCTGTG...AGAGAGAGCGAGGACAAGGAGTAGTATTGAGAAGAGTGGGCTACAAGAACTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS CCA 90 bp | GATGAACATGGTGAGGTGCTGCCACTCCTTGGGGTACATAAACCTTaGAGGCATCCCTTTGTTAATCAACACCATCCCATCATCAAGACA | + |
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Preference number: 5 (lower is better) Translates to: DEHGEVLPLLGVHKP*RHPFVNQHHPIIKT Trigger: TGTCTTGATGATGGGATGGTGTTGATTAACAAAGGGATGCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS-3UTR CAA 90 bp | CCCAGATCAAGGGAGTATGAGAACTTGGAGGAAGAGTCCATTGTGATCATAACAAGGTGCTGCCACTCCTaGGGGTACATAAACCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: PRSREYENLEEESIVIITRCCHS*GYINLG Trigger: TCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCT...TGTTATGATCACAATGGACTCTTCCTCCAAGTTCTCATACTCCCTTGATCTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS CAA 90 bp | GTGGCACCTCTTTCTAGGAGCACGCACCTCTGCCGTAGCACGTTCTaGCTTATGACGTCTGCACAACCATCGAGGGCGAGGAGGATGAAC | + |
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Preference number: 6 (lower is better) Translates to: VAPLSRSTHLCRSTF*LMTSAQPSRARRMN Trigger: GTTCATCCTCCTCGCCCTCGATGGTTGTGCAGACGTCATAAGCAAGAACGTGCTACGGCAGAGGTGCGTGCTCCTAGAAAGAGGTGCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS GCA 72 bp | CCATCGAGGGCGAGGAGGATGAACATGGTGAGGTGCTaGCACTCCTTGGGGTACATAAACCTTGGAGGCATC | + |
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Preference number: 6 (lower is better) Translates to: PSRARRMNMVRC*HSLGYINLGGI Trigger: GATGCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCATCCTCCTCGCCCTCGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS GCA 72 bp | CAACCATCGAGGGCGAGGAGGATGAACATGGTGAGGTaGTGCCACTCCTTGGGGTACATAAACCTTGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: QPSRARRMNMVR*CHSLGYINLGG Trigger: GCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCATCCTCCTCGCCCTCGATGGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS TCA 72 bp | GATGAGGAGAGAGTGAACCTGCAGCTCCACCCCAGATaGTTCTTTAACGTGAGACACCAGCAGCAGCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: DEERVNLQLHPR*FFNVRHQQQQE Trigger: CTCCTGCTGCTGCTGGTGTCTCACGTTAAAGAATCATCTGGGGTGGAGCTGCAGGTTCACTCTCTCCTCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS CAA 90 bp | CCATCGAGGGCGAGGAGGATGAACATGGTGAGGTGCTGCCACTCCTaGGGGTACATAAACCTTGGAGGCATCCCTTTGTTAATCAACACC | + |
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Preference number: 6 (lower is better) Translates to: PSRARRMNMVRCCHS*GYINLGGIPLLINT Trigger: GGTGTTGATTAACAAAGGGATGCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCATCCTCCTCGCCCTCGATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS GCA 72 bp | CAGGAAGCCAGAGACTGGTCTAAAGAGAATGAAGGCTaGCTGAATCAGCCACGAGCCCATCATCAGGAACAG | + |
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Preference number: 6 (lower is better) Translates to: QEARDWSKENEG*LNQPRAHHQEQ Trigger: CTGTTCCTGATGATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS CCA 72 bp | GGTGAGGTGCTGCCACTCCTTGGGGTACATAAACCTTaGAGGCATCCCTTTGTTAATCAACACCATCCCATC | + |
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Preference number: 6 (lower is better) Translates to: GEVLPLLGVHKP*RHPFVNQHHPI Trigger: GATGGGATGGTGTTGATTAACAAAGGGATGCCTCCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS CCA 72 bp | ACTGATGTCACCATCCTCCCACAGGAAGCCAGAGACTaGTCTAAAGAGAATGAAGGCTGCCTGAATCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: TDVTILPQEARD*SKENEGCLNQP Trigger: TGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCTGTGGGAGGATGGTGACATCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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| CDS TCA 72 bp | ATCATCAGGAACAGGAAGGTCTCTATCATCCTGAGGTaGAACATTTCAGGAGCCCAGAGCTCTGCCGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: IIRNRKVSIILR*NISGAQSSAVN Trigger: GTTGACGGCAGAGCTCTGGGCTCCTGAAATGTTTCACCTCAGGATGATAGAGACCTTCCTGTTCCTGATGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055314.4 |
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