Pregenerated sensors for TEDDM1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047053Ensembl transcript IDs: ENSMUST00000050660.6
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCATCCTCCAGGGCCATTGCCTTCACCAAGGAGCAAAGGTTGCACTaGAAGTGCCCAGGAGAGCCCACAGGAGGAAGATGGGGCGGTGTA | + |
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Preference number: 1 (lower is better) Translates to: PSSRAIAFTKEQRLH*KCPGEPTGGRWGGV Trigger: TACACCGCCCCATCTTCCTCCTGTGGGCTCTCCTGGGCACTTGCAGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR CAA 90 bp | GCAGGCTCAGAGACAAGGAGCACAAACTGCCATCCTCCAGGGCCATaGCCTTCACCAAGGAGCAAAGGTTGCACTGCAAGTGCCCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: AGSETRSTNCHPPGP*PSPRSKGCTASAQE Trigger: CTCCTGGGCACTTGCAGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGATGGCAGTTTGTGCTCCTTGTCTCTGAGCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR CAA 90 bp | TGTCCCCCACTCTTCTTCCCTCCCTCTTCTCAAGTCCCATCACGCTaGGGTCTCTTCTCCTCAGCATTAACTGCAGGCTCAGAGACAAGG | + |
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Preference number: 2 (lower is better) Translates to: CPPLFFPPSSQVPSR*GLFSSALTAGSETR Trigger: CCTTGTCTCTGAGCCTGCAGTTAATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTGAGAAGAGGGAGGGAAGAAGAGTGGGGGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR-3UTR GCA 90 bp | CTCTTCTCAAGTCCCATCACGCTTGGGTCTCTTCTCCTCAGCATTAACTGCAGGCCAAGGAGCAAAGGTTaGACTGCAAGTGCCCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: LFSSPITLGSLLLSINCRPRSKG*TASAQE Trigger: CTCCTGGGCACTTGCAGTGCAACCTTTGCTCCTTGG...CCTGCAGTTAATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTGAGAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR-3UTR CCA 90 bp | CATTGTTTCACTCTCTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTCCCACAGGAGGAAGATaGGGCGGTGTATATGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: HCFTLSLCLHVELSPTLLPTGGR*GGVYAQ Trigger: CTGGGCATATACACCGCCCCATCTTCCTCCTGTGGG...AAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR-3UTR GCA 90 bp | TGTGAGGAATCTTTATTCCCTCAGGTGAAGCATTCGGTGGTGCCTCAGAGAAACATCCTCCAGGGCCATTaGCTTCACCAAGGAGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: CEESLFPQVKHSVVPQRNILQGH*LHQGAK Trigger: CTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGAT...GTTTCTCTGAGGCACCACCGAATGCTTCACCTGAGGGAATAAAGATTCCTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR CAA 90 bp | GAGCAGAGATTCCTCTCTTTAACGCCATTGTTTCACTCTCTCTCTTaGCCTGCATGTAGAACTGTCCCCCACTCTTCTTCCCTCCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: EQRFLSLTPLFHSLS*PACRTVPHSSSLPL Trigger: AAGAGGGAGGGAAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATGGCGTTAAAGAGAGGAATCTCTGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR CAA 90 bp | GTGCAGAATTCTGGGCTTGAGCAGAGATTCCTCTCTTTAACGCCATaGTTTCACTCTCTCTCTTTGCCTGCATGTAGAACTGTCCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: VQNSGLEQRFLSLTP*FHSLSLPACRTVPH Trigger: GTGGGGGACAGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATGGCGTTAAAGAGAGGAATCTCTGCTCAAGCCCAGAATTCTGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR-3UTR GCA 90 bp | CTTGAGCAGAGATTCCTCTCTTTAACGCCATTGTTTCACTCTCTCTCTTTGCCTCTCCTCAGCATTAACTaGAGGCTCAGAGACAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: LEQRFLSLTPLFHSLSLPLLSIN*RLRDKE Trigger: CTCCTTGTCTCTGAGCCTGCAGTTAATGCTGAGGAG...AGGCAAAGAGAGAGAGTGAAACAATGGCGTTAAAGAGAGGAATCTCTGCTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR-3UTR CCA 90 bp | CTTGAGCAGAGATTCCTCTCTTTAACGCCATTGTTTCACTCTCTCTCTTTGCCTAAGTCCCATCACGCTTaGGTCTCTTCTCCTCAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LEQRFLSLTPLFHSLSLPKSHHA*VSSPQH Trigger: ATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTT...AGGCAAAGAGAGAGAGTGAAACAATGGCGTTAAAGAGAGGAATCTCTGCTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR GCA 72 bp | CCTCCAGGGCCATTGCCTTCACCAAGGAGCAAAGGTTaGACTGCAAGTGCCCAGGAGAGCCCACAGGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: PPGPLPSPRSKG*TASAQESPQEE Trigger: TTCCTCCTGTGGGCTCTCCTGGGCACTTGCAGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR GCA 72 bp | AGGGCCATTGCCTTCACCAAGGAGCAAAGGTTGCACTaGAAGTGCCCAGGAGAGCCCACAGGAGGAAGATGG | + |
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Preference number: 3 (lower is better) Translates to: RAIAFTKEQRLH*KCPGEPTGGRW Trigger: CCATCTTCCTCCTGTGGGCTCTCCTGGGCACTTGCAGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR GCA 72 bp | GCATTAACTGCAGGCTCAGAGACAAGGAGCACAAACTaGCATCCTCCAGGGCCATTGCCTTCACCAAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: ALTAGSETRSTN*HPPGPLPSPRS Trigger: GCTCCTTGGTGAAGGCAATGGCCCTGGAGGATGGCAGTTTGTGCTCCTTGTCTCTGAGCCTGCAGTTAATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR GCA 72 bp | AGACAAGGAGCACAAACTGCCATCCTCCAGGGCCATTaGCTTCACCAAGGAGCAAAGGTTGCACTGCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: RQGAQTAILQGH*LHQGAKVALQV Trigger: CACTTGCAGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGATGGCAGTTTGTGCTCCTTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR GCA 72 bp | CCCATCACGCTTGGGTCTCTTCTCCTCAGCATTAACTaGAGGCTCAGAGACAAGGAGCACAAACTGCCATCC | + |
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Preference number: 3 (lower is better) Translates to: PITLGSLLLSIN*RLRDKEHKLPS Trigger: GGATGGCAGTTTGTGCTCCTTGTCTCTGAGCCTGCAGTTAATGCTGAGGAGAAGAGACCCAAGCGTGATGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCTCAAGTCCCATCACGCTTGGGTCTCTTCTCCTCAGCATTAACTGCAGGCATCCTCCAGGGCCATaGCCTTCACCAAGGAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: LFSSPITLGSLLLSINCRHPPGP*PSPRSK Trigger: TTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGATG...CCTGCAGTTAATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTGAGAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR GCA 72 bp | AAGCATTCGGTGGTGCCTCAGAGAAACAGCGCTGAGTaGAGAATTCTGGGCTTGAGCAGAGATTCCTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: KHSVVPQRNSAE*RILGLSRDSSL Trigger: AAGAGAGGAATCTCTGCTCAAGCCCAGAATTCTGCACTCAGCGCTGTTTCTCTGAGGCACCACCGAATGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | CACTGCAAGTGCCCAGGAGAGCCCACAGGAGGAAGATGGGGCGGTGTATATGCCGATACAGCGCTTCCTTaGACCCCATCAGCCTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: HCKCPGEPTGGRWGGVYADTALP*TPSASS Trigger: GCTTGAGGCTGATGGGGTCCAAGGAAGCGCTGTATC...GGCATATACACCGCCCCATCTTCCTCCTGTGGGCTCTCCTGGGCACTTGCAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR GCA 90 bp | AGTGCCCAGGAGAGCCCACAGGAGGAAGATGGGGCGGTGTATATGCCCAGGTATTCATCTTTGTCCTGCTaGTCTGCCTCCTGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SAQESPQEEDGAVYMPRYSSLSC*SASCSS Trigger: GCTGCTGCAGGAGGCAGAGCAGCAGGACAAAGATGA...ATACCTGGGCATATACACCGCCCCATCTTCCTCCTGTGGGCTCTCCTGGGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | CACTGCAAGTGCCCAGGAGAGCCCACAGGAGGAAGATGGGGCGGTGTATATGCCGTCATCATCCTCCCATaGGAAGCCAGAGACTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: HCKCPGEPTGGRWGGVYAVIILP*EARDWS Trigger: AGACCAGTCTCTGGCTTCCCATGGGAGGATGATGAC...GGCATATACACCGCCCCATCTTCCTCCTGTGGGCTCTCCTGGGCACTTGCAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR TCA 90 bp | AGTGCCCAGGAGAGCCCACAGGAGGAAGATGGGGCGGTGTATATGCCCAGGTATAGAATGAAGGCTGCCTaGATCAGCCACGAGCCCATT | + |
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Preference number: 4 (lower is better) Translates to: SAQESPQEEDGAVYMPRYRMKAA*ISHEPI Trigger: AATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCT...ATACCTGGGCATATACACCGCCCCATCTTCCTCCTGTGGGCTCTCCTGGGCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR TCA 90 bp | TGCAGGCTCAGAGACAAGGAGCACAAACTGCCATCCTCCAGGGCCATTGCCTTCACAGGGAGAGATCTTTaGAAGGAGAGGAGCCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: CRLRDKEHKLPSSRAIAFTGRDL*KERSLV Trigger: GACCAGGCTCCTCTCCTTTCAAAGATCTCTCCCTGT...GAAGGCAATGGCCCTGGAGGATGGCAGTTTGTGCTCCTTGTCTCTGAGCCTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR CAA 72 bp | GAGACAAGGAGCACAAACTGCCATCCTCCAGGGCCATaGCCTTCACCAAGGAGCAAAGGTTGCACTGCAAGT | + |
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Preference number: 4 (lower is better) Translates to: ETRSTNCHPPGP*PSPRSKGCTAS Trigger: ACTTGCAGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGATGGCAGTTTGTGCTCCTTGTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR GCA 90 bp | ACAAACTGCCATCCTCCAGGGCCATTGCCTTCACCAAGGAGCAAAGGTTGCACTAAGAACATGGTGAGGTaGTGCCACTCCTTGGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: TNCHPPGPLPSPRSKGCTKNMVR*CHSLGY Trigger: GTACCCCAAGGAGTGGCAGCACCTCACCATGTTCTT...AGTGCAACCTTTGCTCCTTGGTGAAGGCAATGGCCCTGGAGGATGGCAGTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | TCTTCCCTCCCTCTTCTCAAGTCCCATCACGCTTGGGTCTCTTCTCCTCAGCATTTCAACCAGCCTGCATaGGCTATTTTCCACAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: SSLPLLKSHHAWVSSPQHFNQPA*AIFHSR Trigger: CCGGCTGTGGAAAATAGCCCATGCAGGCTGGTTGAA...ATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTGAGAAGAGGGAGGGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | CTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTCCCTCCCTCTTCTCGAAAGGAGAGGAGCCTaGTCATCTTTGTCCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSLPACRTVPHSSSLPLLERRGA*SSLSCC Trigger: GCAGCAGGACAAAGATGACCAGGCTCCTCTCCTTTC...GAGAAGAGGGAGGGAAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR GCA 90 bp | TTGGGTCTCTTCTCCTCAGCATTAACTGCAGGCTCAGAGACAAGGAGCACAAACTGGTCATCTTTGTCCTaGTGCTCTGCCTCCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGLFSSALTAGSETRSTNWSSLS*CSASCS Trigger: GCTGCAGGAGGCAGAGCAGCAGGACAAAGATGACCA...GTTTGTGCTCCTTGTCTCTGAGCCTGCAGTTAATGCTGAGGAGAAGAGACCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR GCA 90 bp | CTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTCCCTCCCTCTTCTCAACCTTCAACCAGCCTaGATGGGCTATTTTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: LSLPACRTVPHSSSLPLLNLQPA*MGYFPQ Trigger: CTGTGGAAAATAGCCCATGCAGGCTGGTTGAAGGTT...GAGAAGAGGGAGGGAAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR GCA 90 bp | TCTTCCCTCCCTCTTCTCAAGTCCCATCACGCTTGGGTCTCTTCTCCTCAGCATGCCGTAGCATGTTCTTaGTCACCATTTCTACACAGC | + |
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Preference number: 4 (lower is better) Translates to: SSLPLLKSHHAWVSSPQHAVACS*SPFLHS Trigger: GCTGTGTAGAAATGGTGAGCAAGAACATGCTACGGC...ATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTGAGAAGAGGGAGGGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | CTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTCCCTCCCTCTTCTCTTGGTGGCACCCCTTTaGTCATTAATGTCAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LSLPACRTVPHSSSLPLLLVAPL*SLMSAL Trigger: AAGGGCTGACATTAATGACCAAAGGGGTGCCACCAA...GAGAAGAGGGAGGGAAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | CAAGTCCCATCACGCTTGGGTCTCTTCTCCTCAGCATTAACTGCAGGCTCAGAGTGGGAAGCCAGAGACTaGTCTAAAGAGAATGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: QVPSRLGLFSSALTAGSEWEARD*SKENEG Trigger: GCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCCA...CTCTGAGCCTGCAGTTAATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR TCA 90 bp | TCTTCCCTCCCTCTTCTCAAGTCCCATCACGCTTGGGTCTCTTCTCCTCAGCATACAGAAGAGAGTCATTaGATATCACAGCTCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SSLPLLKSHHAWVSSPQHTEESH*ISQLWR Trigger: TCTCCAGAGCTGTGATATTCAATGACTCTCTTCTGT...ATGCTGAGGAGAAGAGACCCAAGCGTGATGGGACTTGAGAAGAGGGAGGGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR TCA 90 bp | CATTGTTTCACTCTCTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTGATGATTCTTTAACGTaGGACACTAGCAGCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: HCFTLSLCLHVELSPTLLDDSLT*DTSSRS Trigger: GCTCCTGCTGCTAGTGTCTCACGTTAAAGAATCATC...AAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR TCA 90 bp | CATTGTTTCACTCTCTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTACATGCATAAGGCATTaGTCATCACATGCCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: HCFTLSLCLHVELSPTLLTCIRH*SSHASR Trigger: TCTGCTGGCATGTGATGATCAATGCCTTATGCATGT...AAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| 3UTR CAA 72 bp | TCTGGGCTTGAGCAGAGATTCCTCTCTTTAACGCCATaGTTTCACTCTCTCTCTTTGCCTGCATGTAGAACT | + |
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Preference number: 4 (lower is better) Translates to: SGLEQRFLSLTP*FHSLSLPACRT Trigger: AGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATGGCGTTAAAGAGAGGAATCTCTGCTCAAGCCCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CCA 90 bp | CCATTGTTTCACTCTCTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTATTTCCCCTTATTCTTaGAAAGGTAGGAAGGATACA | + |
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Preference number: 4 (lower is better) Translates to: PLFHSLSLPACRTVPHSSISPYS*KGRKDT Trigger: TGTATCCTTCCTACCTTTCCAAGAATAAGGGGAAAT...AGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAGAGAGTGAAACAATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CCA 90 bp | CGTGAGACACTAGCAGCAGGAGCAGCACGTAGACACCCAGGACCGTaGCACCTCTTTCTAGGAGCACACACCTCTGCCGTAGCATGTTCT | + |
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Preference number: 5 (lower is better) Translates to: RETLAAGAARRHPGP*HLFLGAHTSAVACS Trigger: AGAACATGCTACGGCAGAGGTGTGTGCTCCTAGAAAGAGGTGCCACGGTCCTGGGTGTCTACGTGCTGCTCCTGCTGCTAGTGTCTCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CAA 90 bp | CTCTCTTTGCCTGCATGTAGAACTGTCCCCCACTCTTCTTCCCTCCCTCTTCTCGGAGCCTGGTCATCTTaGTCCTGCTGCTCTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LSLPACRTVPHSSSLPLLGAWSS*SCCSAS Trigger: GGAGGCAGAGCAGCAGGACAAAGATGACCAGGCTCC...GAGAAGAGGGAGGGAAGAAGAGTGGGGGACAGTTCTACATGCAGGCAAAGAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS TCA 90 bp | TTTGTCCTGCTGCTCTGCCTCCTGCAGCAGCTTGTAGAAGGTTCCTaGAGAGCTCTCCTGATACAGCGCTTCCTTGGACCCCATCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: FVLLLCLLQQLVEGS*RALLIQRFLGPHQP Trigger: AGGCTGATGGGGTCCAAGGAAGCGCTGTATCAGGAGAGCTCTTCAGGAACCTTCTACAAGCTGCTGCAGGAGGCAGAGCAGCAGGACAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CAA 90 bp | TGCAGGCTCAGAGACAAGGAGCACAAACTGCCATCCTCCAGGGCCATTGCCTTCAGGTGCTGCCACTCCTaGGGGTACATAAACCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: CRLRDKEHKLPSSRAIAFRCCHS*GYINLG Trigger: ACCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCT...GAAGGCAATGGCCCTGGAGGATGGCAGTTTGTGCTCCTTGTCTCTGAGCCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 90 bp | TCTACACAGCCATCAAGGGTGAGAAGGAAGAACATGGTGAGGTGCTaGCACTCCTTGGGGTACATAAACCTTGGTGGCACCCCTTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: STQPSRVRRKNMVRC*HSLGYINLGGTPLV Trigger: GACCAAAGGGGTGCCACCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCTTCCTTCTCACCCTTGATGGCTGTGTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 90 bp | CTCATAAACGATCAAGAGGGAGCCGATCACAACCTTCAACCAGCCTaGATGGGCTATTTTCCACAGCCGGGCCCATTTCCCCTTATTCTT | + |
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Preference number: 5 (lower is better) Translates to: LINDQEGADHNLQPA*MGYFPQPGPFPLIL Trigger: AAGAATAAGGGGAAATGGGCCCGGCTGTGGAAAATAGCCCATGCAGGCTGGTTGAAGGTTGTGATCGGCTCCCTCTTGATCGTTTATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 90 bp | ATTTCTACACAGCCATCAAGGGTGAGAAGGAAGAACATGGTGAGGTaGTGCCACTCCTTGGGGTACATAAACCTTGGTGGCACCCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: ISTQPSRVRRKNMVR*CHSLGYINLGGTPL Trigger: CAAAGGGGTGCCACCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCTTCCTTCTCACCCTTGATGGCTGTGTAGAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS-3UTR CAA 90 bp | TGTGAGGAATCTTTATTCCCTCAGGTGAAGCATTCGGTGGTGCCTCAGAGAAACAACATGCATAAGGCATaGATCATCACATGCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: CEESLFPQVKHSVVPQRNNMHKA*IITCQQ Trigger: CTGCTGGCATGTGATGATCAATGCCTTATGCATGTT...GTTTCTCTGAGGCACCACCGAATGCTTCACCTGAGGGAATAAAGATTCCTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS TCA 90 bp | TCCCCTTATTCTTGGAAAGGTAGGAAGGATACAGAAGAGAGTCATTaGATATCACAGCTCTGGAGACTATTACTGCTTGATACAGACCAT | + |
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Preference number: 5 (lower is better) Translates to: SPYSWKGRKDTEESH*ISQLWRLLLLDTDH Trigger: ATGGTCTGTATCAAGCAGTAATAGTCTCCAGAGCTGTGATATTCAATGACTCTCTTCTGTATCCTTCCTACCTTTCCAAGAATAAGGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 90 bp | ATACAGAAGAGAGTCATTGAATATCACAGCTCTGGAGACTATTACTaGTTGATACAGACCATAGAAGACCAGAAACAAGCCTGGAGATAT | + |
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Preference number: 5 (lower is better) Translates to: IQKRVIEYHSSGDYY*LIQTIEDQKQAWRY Trigger: ATATCTCCAGGCTTGTTTCTGGTCTTCTATGGTCTGTATCAAGCAGTAATAGTCTCCAGAGCTGTGATATTCAATGACTCTCTTCTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CCA 72 bp | CTAGCAGCAGGAGCAGCACGTAGACACCCAGGACCGTaGCACCTCTTTCTAGGAGCACACACCTCTGCCGTA | + |
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Preference number: 6 (lower is better) Translates to: LAAGAARRHPGP*HLFLGAHTSAV Trigger: TACGGCAGAGGTGTGTGCTCCTAGAAAGAGGTGCCACGGTCCTGGGTGTCTACGTGCTGCTCCTGCTGCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CCA 72 bp | CGGTCACAGGGAGAGATCTTTGAAAGGAGAGGAGCCTaGTCATCTTTGTCCTGCTGCTCTGCCTCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSQGEIFERRGA*SSLSCCSASCS Trigger: GCTGCAGGAGGCAGAGCAGCAGGACAAAGATGACCAGGCTCCTCTCCTTTCAAAGATCTCTCCCTGTGACCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 72 bp | CCATCAAGGGTGAGAAGGAAGAACATGGTGAGGTGCTaGCACTCCTTGGGGTACATAAACCTTGGTGGCACC | + |
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Preference number: 6 (lower is better) Translates to: PSRVRRKNMVRC*HSLGYINLGGT Trigger: GGTGCCACCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCTTCCTTCTCACCCTTGATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 72 bp | CAGCCATCAAGGGTGAGAAGGAAGAACATGGTGAGGTaGTGCCACTCCTTGGGGTACATAAACCTTGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: QPSRVRRKNMVR*CHSLGYINLGG Trigger: GCCACCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCTTCCTTCTCACCCTTGATGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CCA 72 bp | GATACAGCGCTTCCTTGGACCCCATCAGCCTCAAGCTaGGACTGTAACAACGGTGCCAAAAGGAAGAGACAC | + |
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Preference number: 6 (lower is better) Translates to: DTALPWTPSASS*DCNNGAKRKRH Trigger: GTGTCTCTTCCTTTTGGCACCGTTGTTACAGTCCCAGCTTGAGGCTGATGGGGTCCAAGGAAGCGCTGTATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 72 bp | AGGACCGTGGCACCTCTTTCTAGGAGCACACACCTCTaGCGTAGCATGTTCTTGCTCACCATTTCTACACAG | + |
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Preference number: 6 (lower is better) Translates to: RTVAPLSRSTHL*RSMFLLTISTQ Trigger: CTGTGTAGAAATGGTGAGCAAGAACATGCTACGGCAGAGGTGTGTGCTCCTAGAAAGAGGTGCCACGGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CAA 90 bp | CCATCAAGGGTGAGAAGGAAGAACATGGTGAGGTGCTGCCACTCCTaGGGGTACATAAACCTTGGTGGCACCCCTTTGGTCATTAATGTC | + |
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Preference number: 6 (lower is better) Translates to: PSRVRRKNMVRCCHS*GYINLGGTPLVINV Trigger: GACATTAATGACCAAAGGGGTGCCACCAAGGTTTATGTACCCCAAGGAGTGGCAGCACCTCACCATGTTCTTCCTTCTCACCCTTGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 72 bp | TGGGAAGCCAGAGACTGGTCTAAAGAGAATGAAGGCTaGCTGAATCAGCCACGAGCCCATTATCAGGATCAG | + |
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Preference number: 6 (lower is better) Translates to: WEARDWSKENEG*LNQPRAHYQDQ Trigger: CTGATCCTGATAATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CCA 72 bp | ACTGATGTCATCATCCTCCCATGGGAAGCCAGAGACTaGTCTAAAGAGAATGAAGGCTGCCTGAATCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: TDVIILPWEARD*SKENEGCLNQP Trigger: TGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTCTCTGGCTTCCCATGGGAGGATGATGACATCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CAA 72 bp | CACTCCTTGGGGTACATAAACCTTGGTGGCACCCCTTaGGTCATTAATGTCAGCCCTTCTTTAACACAACTG | + |
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Preference number: 6 (lower is better) Translates to: HSLGYINLGGTP*VINVSPSLTQL Trigger: CAGTTGTGTTAAAGAAGGGCTGACATTAATGACCAAAGGGGTGCCACCAAGGTTTATGTACCCCAAGGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS GCA 72 bp | AGAGTCATTGAATATCACAGCTCTGGAGACTATTACTaGTTGATACAGACCATAGAAGACCAGAAACAAGCC | + |
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Preference number: 6 (lower is better) Translates to: RVIEYHSSGDYY*LIQTIEDQKQA Trigger: GGCTTGTTTCTGGTCTTCTATGGTCTGTATCAAGCAGTAATAGTCTCCAGAGCTGTGATATTCAATGACTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS CAA 90 bp | CAGAAGAGAGTCATTGAATATCACAGCTCTGGAGACTATTACTGCTaGATACAGACCATAGAAGACCAGAAACAAGCCTGGAGATATATG | + |
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Preference number: 6 (lower is better) Translates to: QKRVIEYHSSGDYYC*IQTIEDQKQAWRYM Trigger: CATATATCTCCAGGCTTGTTTCTGGTCTTCTATGGTCTGTATCAAGCAGTAATAGTCTCCAGAGCTGTGATATTCAATGACTCTCTTCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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| CDS TCA 72 bp | TCTTGGAAAGGTAGGAAGGATACAGAAGAGAGTCATTaGATATCACAGCTCTGGAGACTATTACTGCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: SWKGRKDTEESH*ISQLWRLLLLD Trigger: ATCAAGCAGTAATAGTCTCCAGAGCTGTGATATTCAATGACTCTCTTCTGTATCCTTCCTACCTTTCCAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050660.6 |
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