Pregenerated sensors for TECRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049537Ensembl transcript IDs: ENSMUST00000053543.11, ENSMUST00000146669.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGGTGTCTTCAAACTCATCGGGCTGATAATGTGAGCTCACAGAGATaGGGCAAAACCCACAAGTCAGCAGATCACAATGCTGAGAGAAGG | + |
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Preference number: 1 (lower is better) Translates to: RCLQTHRADNVSSQR*GKTHKSADHNAERR Trigger: CCTTCTCTCAGCATTGTGATCTGCTGACTTGTGGGTTTTGCCTCATCTCTGTGAGCTCACATTATCAGCCCGATGAGTTTGAAGACACCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR TCA 90 bp | GAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTGATAATGTaGGCTCACAGAGATGAGGCAAAACCCACAAGTCAGCAGATCACA | + |
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Preference number: 1 (lower is better) Translates to: ELQGNGVFKLIGLIM*AHRDEAKPTSQQIT Trigger: TGTGATCTGCTGACTTGTGGGTTTTGCCTCATCTCTGTGAGCTCACATTATCAGCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR TCA 90 bp | CTCACAGAGATGAGGCAAAACCCACAAGTCAGCAGATCACAATGCTaGGAGAAGGGTGAGGGAAAGAATAGGCAAAGAGTTGTGGGTATA | + |
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Preference number: 1 (lower is better) Translates to: LTEMRQNPQVSRSQC*EKGEGKNRQRVVGI Trigger: TATACCCACAACTCTTTGCCTATTCTTTCCCTCACCCTTCTCTCAGCATTGTGATCTGCTGACTTGTGGGTTTTGCCTCATCTCTGTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCAGCAGATCACAATGCTaGGAGAAGGGTGAGGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: SPEMIENSKETVSSNSSGSRSQC*EKGEGK Trigger: CTTTCCCTCACCCTTCTCTCAGCATTGTGATCTGCT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGTGAGCTCACAGAGATaGGGCAAAACCCACAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: SPEMIENSKETVSSNSSGVSSQR*GKTHKS Trigger: TGACTTGTGGGTTTTGCCTCATCTCTGTGAGCTCAC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR TCA 72 bp | GGAAACGGTGTCTTCAAACTCATCGGGCTGATAATGTaGGCTCACAGAGATGAGGCAAAACCCACAAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: GNGVFKLIGLIM*AHRDEAKPTSQ Trigger: CTGACTTGTGGGTTTTGCCTCATCTCTGTGAGCTCACATTATCAGCCCGATGAGTTTGAAGACACCGTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR TCA 72 bp | CAAACTCATCGGGCTGATAATGTGAGCTCACAGAGATaGGGCAAAACCCACAAGTCAGCAGATCACAATGCT | + |
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Preference number: 3 (lower is better) Translates to: QTHRADNVSSQR*GKTHKSADHNA Trigger: AGCATTGTGATCTGCTGACTTGTGGGTTTTGCCTCATCTCTGTGAGCTCACATTATCAGCCCGATGAGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR TCA 72 bp | ATGAGGCAAAACCCACAAGTCAGCAGATCACAATGCTaGGAGAAGGGTGAGGGAAAGAATAGGCAAAGAGTT | + |
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Preference number: 3 (lower is better) Translates to: MRQNPQVSRSQC*EKGEGKNRQRV Trigger: AACTCTTTGCCTATTCTTTCCCTCACCCTTCTCTCAGCATTGTGATCTGCTGACTTGTGGGTTTTGCCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| 3UTR TCA 72 bp | GTTAGCAAGAAATACTGTCTTTGGGACTTTCTATACTaGGGCTCCTTGAAACCAACAGTAATTATAAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: VSKKYCLWDFLY*GSLKPTVIIKF Trigger: GAACTTTATAATTACTGTTGGTTTCAAGGAGCCTCAGTATAGAAAGTCCCAAAGACAGTATTTCTTGCTAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGACTGTGGCAGTCCCTaGAATAACAATTCCCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGDCGSP*NNNSLL Trigger: CAAGAGGGAATTGTTATTCCAGGGACTGCCACAGTC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCCATTATTCTTCATTGTaGACTGTGGCAGTCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGHYSSL*TVAVPG Trigger: TCCAGGGACTGCCACAGTCCACAATGAAGAATAATG...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGCCCACAGAGACATCTaGATGGTCATTAAGATTGTG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGAHRDI*MVIKIV Trigger: CACAATCTTAATGACCATCCAGATGTCTCTGTGGGC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTTGCCTGTTTCCAAATaGTGGTGGTGTATATCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGLPVSK*WWCISW Trigger: CCAAGATATACACCACCATCATTTGGAAACAGGCAA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR GCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTTTATGCTTCTTTCGTaGCCACAGAGACATCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGFMLLS*PQRHLD Trigger: ATCCAGATGTCTCTGTGGGCACGAAAGAAGCATAAA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGTTGTAATTTGGACTTaGGAAACAGGCATTGCTACC | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGVVIWT*ETGIAT Trigger: GGTAGCAATGCCTGTTTCCCAAGTCCAAATTACAAC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCCCAACTGGAAGTGTCTaGGTCATAACTGTGAAACTA | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGPTGSV*VITVKL Trigger: TAGTTTCACAGTTATGACCCAGACACTTCCAGTTGG...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCCAACACTTTGAACTGTaGTGTAGTCCCTCAAATATG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGQHFEL*CSPSNM Trigger: CATATTTGAGGGACTACATCACAGTTCAAAGTGTTG...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCCCTGTAGAAACTTTGTaGACAAATAAAGTCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGPVETL*TNKVSR Trigger: CCTGGAGACTTTATTTGTTCACAAAGTTTCTACAGG...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR GCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGCAGACACTATTACTTaGCTGTTTCCAAATGATGGT | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGADTIT*LFPNDG Trigger: ACCATCATTTGGAAACAGGCAAGTAATAGTGTCTGC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCAGAAGGGTACCACTTTaGACATGCTTTGTGAAACTT | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGRRVPL*TCFVKL Trigger: AAGTTTCACAAAGCATGTCCAAAGTGGTACCCTTCT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCAAAGGGGTTGTAATTTaGACTTGGGAAACAGGCATT | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGKGVVI*TWETGI Trigger: AATGCCTGTTTCCCAAGTCCAAATTACAACCCCTTT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTGTGAAAATACCAACTaGAAGTGTCTGGGTCATAAC | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGCENTN*KCLGHN Trigger: GTTATGACCCAGACACTTCCAGTTGGTATTTTCACA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCAAAGTGAGTCGTTTTTaGATGTTTGACTGCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGKVSRF*MFDCCS Trigger: ACTACAGCAGTCAAACATTCAAAAACGACTCACTTT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGACATCATGAATAGTTaGTGTTTGTGTGACCTTATC | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGDIMNS*CLCDLI Trigger: GATAAGGTCACACAAACATCAACTATTCATGATGTC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCATAGAGTGTGATAATTaGAGAAGCTGCAACACTTTG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGIECDN*RSCNTL Trigger: CAAAGTGTTGCAGCTTCTTCAATTATCACACTCTAT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR TCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTGGTCATTAAGATTGTaGAAATACCAACTGGAAGTG | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGWSLRL*KYQLEV Trigger: CACTTCCAGTTGGTATTTTCACAATCTTAATGACCA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR GCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGTACCACTTTGGACATaGTTTGTGAAACTTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGVPLWT*FVKLLF Trigger: AAACAGAAGTTTCACAAAGCATGTCCAAAGTGGTAC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR GCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTTCCGATATATTTTATaGTTCTTTCGTGCCCACAGA | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGFRYIL*FFRAHR Trigger: TCTGTGGGCACGAAAGAAGCATAAAATATATCGGAA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCAGTTGTGACAAAGAGTaGAAATTTCTCGCATTATTC | + |
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Preference number: 4 (lower is better) Translates to: SPEMIENSKETVSSNSSGSCDKE*KFLALF Trigger: GAATAATGCGAGAAATTTCCACTCTTTGTCACAACT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS TCA 90 bp | GGTCCTGAGTATTCAGCCAAAAAGACTGTAGTCCACCCGACTTGCTaGCCCAAGTCATATTCTAGTTGTAGGCCAATTCGAGAAGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: GPEYSAKKTVVHPTC*PKSYSSCRPIREGY Trigger: GTACCCTTCTCGAATTGGCCTACAACTAGAATATGACTTGGGTCAGCAAGTCGGGTGGACTACAGTCTTTTTGGCTGAATACTCAGGACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146669.2 |
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| CDS-3UTR CAA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTCGCATTATTCTTCATaGTGGACTGTGGCAGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: SPEMIENSKETVSSNSSGSHYSS*WTVAVP Trigger: AGGGACTGCCACAGTCCACAATGAAGAATAATGCGA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CAA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGAGAAGGGTACCACTTaGGACATGCTTTGTGAAACT | + |
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Preference number: 5 (lower is better) Translates to: SPEMIENSKETVSSNSSGEKGTT*DMLCET Trigger: AGTTTCACAAAGCATGTCCAAAGTGGTACCCTTCTC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CAA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCAGAAGCTGCAACACTTaGAACTGTGATGTAGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: SPEMIENSKETVSSNSSGRSCNT*NCDVVP Trigger: AGGGACTACATCACAGTTCAAAGTGTTGCAGCTTCT...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CAA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGGTTGTAATTTGGACTaGGGAAACAGGCATTGCTAC | + |
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Preference number: 5 (lower is better) Translates to: SPEMIENSKETVSSNSSGGCNLD*GNRHCY Trigger: GTAGCAATGCCTGTTTCCCAAGTCCAAATTACAACC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 90 bp | TGGAAATTTCTCGCATTATTCTTCATTGTGGACTGTGGCAGTCCCTaGAATAACAATTCCCTCTTGCGTTCCAGGGACTTGTGCCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: WKFLALFFIVDCGSP*NNNSLLRSRDLCLL Trigger: CAAAAGGCACAAGTCCCTGGAACGCAAGAGGGAATTGTTATTCCAGGGACTGCCACAGTCCACAATGAAGAATAATGCGAGAAATTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CAA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCTGCTACCTGTGTGATTaGGATGAGCCAAAACTGTAT | + |
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Preference number: 5 (lower is better) Translates to: SPEMIENSKETVSSNSSGCYLCD*DEPKLY Trigger: ATACAGTTTTGGCTCATCCAAATCACACAGGTAGCA...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 90 bp | AGGACAGGAAACCAGGAAAAACAACCATGTAAAGGGGTTGTAATTTaGACTTGGGAAACAGGCATTGCTACCTGTGTGATTTGGATGAGC | + |
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Preference number: 5 (lower is better) Translates to: RTGNQEKQPCKGVVI*TWETGIATCVIWMS Trigger: GCTCATCCAAATCACACAGGTAGCAATGCCTGTTTCCCAAGTCCAAATTACAACCCCTTTACATGGTTGTTTTTCCTGGTTTCCTGTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS-3UTR CAA 90 bp | AGCCCAGAAATGATAGAGAACTCCAAGGAAACGGTGTCTTCAAACTCATCGGGCGTCGTTTTTGAATGTTaGACTGCTGTAGTAGTTTTG | + |
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Preference number: 5 (lower is better) Translates to: SPEMIENSKETVSSNSSGVVFEC*TAVVVL Trigger: CAAAACTACTACAGCAGTCAAACATTCAAAAACGAC...GCCCGATGAGTTTGAAGACACCGTTTCCTTGGAGTTCTCTATCATTTCTGGGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 90 bp | TTCTTCCGATATATTTTATGCTTCTTTCGTGCCCACAGAGACATCTaGATGGTCATTAAGATTGTGAAAATACCAACTGGAAGTGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: FFRYILCFFRAHRDI*MVIKIVKIPTGSVW Trigger: CCAGACACTTCCAGTTGGTATTTTCACAATCTTAATGACCATCCAGATGTCTCTGTGGGCACGAAAGAAGCATAAAATATATCGGAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS TCA 72 bp | TATTCAGCCAAAAAGACTGTAGTCCACCCGACTTGCTaGCCCAAGTCATATTCTAGTTGTAGGCCAATTCGA | + |
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Preference number: 6 (lower is better) Translates to: YSAKKTVVHPTC*PKSYSSCRPIR Trigger: TCGAATTGGCCTACAACTAGAATATGACTTGGGTCAGCAAGTCGGGTGGACTACAGTCTTTTTGGCTGAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146669.2 |
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| CDS TCA 72 bp | AGCATCCAGTATTTCGATCTCAAAGTGAGTCGTTTTTaGATGTTTGACTGCTGTAGTAGTTTTGAGCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SIQYFDLKVSRF*MFDCCSSFERA Trigger: GGCCCGCTCAAAACTACTACAGCAGTCAAACATTCAAAAACGACTCACTTTGAGATCGAAATACTGGATGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053543.11 ENSMUST00000146669.2 |
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| CDS CAA 72 bp | GTGACAAAGAGTGGAAATTTCTCGCATTATTCTTCATaGTGGACTGTGGCAGTCCCTGGAATAACAATTCCC | + |
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Preference number: 6 (lower is better) Translates to: VTKSGNFSHYSS*WTVAVPGITIP Trigger: GGGAATTGTTATTCCAGGGACTGCCACAGTCCACAATGAAGAATAATGCGAGAAATTTCCACTCTTTGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CAA 90 bp | GTACAAGTTGTGACAAAGAGTGGAAATTTCTCGCATTATTCTTCATaGTGGACTGTGGCAGTCCCTGGAATAACAATTCCCTCTTGCGTT | + |
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Preference number: 6 (lower is better) Translates to: VQVVTKSGNFSHYSS*WTVAVPGITIPSCV Trigger: AACGCAAGAGGGAATTGTTATTCCAGGGACTGCCACAGTCCACAATGAAGAATAATGCGAGAAATTTCCACTCTTTGTCACAACTTGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 72 bp | ACAAAGAGTGGAAATTTCTCGCATTATTCTTCATTGTaGACTGTGGCAGTCCCTGGAATAACAATTCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: TKSGNFSHYSSL*TVAVPGITIPS Trigger: AGAGGGAATTGTTATTCCAGGGACTGCCACAGTCCACAATGAAGAATAATGCGAGAAATTTCCACTCTTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 72 bp | GAAAAACAACCATGTAAAGGGGTTGTAATTTGGACTTaGGAAACAGGCATTGCTACCTGTGTGATTTGGATG | + |
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Preference number: 6 (lower is better) Translates to: EKQPCKGVVIWT*ETGIATCVIWM Trigger: CATCCAAATCACACAGGTAGCAATGCCTGTTTCCCAAGTCCAAATTACAACCCCTTTACATGGTTGTTTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 72 bp | AACCAGGAAAAACAACCATGTAAAGGGGTTGTAATTTaGACTTGGGAAACAGGCATTGCTACCTGTGTGATT | + |
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Preference number: 6 (lower is better) Translates to: NQEKQPCKGVVI*TWETGIATCVI Trigger: AATCACACAGGTAGCAATGCCTGTTTCCCAAGTCCAAATTACAACCCCTTTACATGGTTGTTTTTCCTGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS TCA 72 bp | TTGCTGACCCAAGTCTGTAAAATAGAGTGTGATAATTaGAGAAGCTGCAACACTTTGAACTGTGATGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: LLTQVCKIECDN*RSCNTLNCDVV Trigger: GACTACATCACAGTTCAAAGTGTTGCAGCTTCTTCAATTATCACACTCTATTTTACAGACTTGGGTCAGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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| CDS CCA 72 bp | TATATTTTATGCTTCTTTCGTGCCCACAGAGACATCTaGATGGTCATTAAGATTGTGAAAATACCAACTGGA | + |
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Preference number: 6 (lower is better) Translates to: YILCFFRAHRDI*MVIKIVKIPTG Trigger: TCCAGTTGGTATTTTCACAATCTTAATGACCATCCAGATGTCTCTGTGGGCACGAAAGAAGCATAAAATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053543.11 |
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