Pregenerated sensors for TECR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031708Ensembl transcript IDs: ENSMUST00000019382.17, ENSMUST00000163837.2, ENSMUST00000165740.9, ENSMUST00000212005.2, ENSMUST00000212990.2, ENSMUST00000238861.2, ENSMUST00000238997.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGCAGTaGGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGAGCTGCTC | + |
|
Preference number: 1 (lower is better) Translates to: CCWRAMASHTSGQGQ*GVESITGQSREELL Trigger: GAGCAGCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212005.2 |
||
| 3UTR CCA 90 bp | GGAGAGCCATGGCCAGCCACACATCAGGACAGGGGCAGTGAGGGGTaGAGAGTATTACTGGGCAGAGCCGTGAGGAGCTGCTCAGAGCAG | + |
|
Preference number: 1 (lower is better) Translates to: GEPWPATHQDRGSEG*RVLLGRAVRSCSEQ Trigger: CTGCTCTGAGCAGCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212005.2 |
||
| 3UTR-3UTR CCA 90 bp | GGTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGAGGGGCAGTGAGGGGTaGAGAGTATTACTGGGCAGA | + |
|
Preference number: 2 (lower is better) Translates to: GKQVLLLLLESHGQPHIRRGSEG*RVLLGR Trigger: TCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCT...CCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| 3UTR CCA 72 bp | TGGCCAGCCACACATCAGGACAGGGGCAGTGAGGGGTaGAGAGTATTACTGGGCAGAGCCGTGAGGAGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: WPATHQDRGSEG*RVLLGRAVRSC Trigger: GCAGCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATGTGTGGCTGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | CATCAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGGATGAGGGAAAGGCATaGGGAGGCATGCGGGCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: HQDRGSEGWRVLLGRAVRDEGKA*GGMRAQ Trigger: CTGGGCCCGCATGCCTCCGCATGCCTTTCCCTCATC...CCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163837.2 |
||
| CDS-3UTR CCA 90 bp | CAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGAGCCCATCGAGGCCTTGGTaGGCCTCTTTGGCTGCCATG | + |
|
Preference number: 4 (lower is better) Translates to: QDRGSEGWRVLLGRAVRSPSRPW*ASLAAM Trigger: CATGGCAGCCAAAGAGGCCCACCAAGGCCTCGATGG...GCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTCAGGGACTTCCCCTTaGGGTCCAGGCGGAGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGSGTSP*GPGGGT Trigger: AGTCCCTCCGCCTGGACCCCAAGGGGAAGTCCCTGA...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000238997.2 |
||
| CDS-3UTR TCA 90 bp | CATCAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGAAAGGCATGGTTCCGTaGGAGAATCGGTGCACGAAG | + |
|
Preference number: 4 (lower is better) Translates to: HQDRGSEGWRVLLGRAVRKGMVP*ENRCTK Trigger: CTTCGTGCACCGATTCTCTCACGGAACCATGCCTTT...CCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | CAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGAGCCACAAAAACGGCCAGTaGCAGCTTAACCTGCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: QDRGSEGWRVLLGRAVRSHKNGQ*QLNLLN Trigger: GTTCAGCAGGTTAAGCTGGCACTGGCCGTTTTTGTG...GCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGTCAGGGACTTCCCCTTaGGGTCCAGGCGGAGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQSGTSP*GPGGGT Trigger: AGTCCCTCCGCCTGGACCCCAAGGGGAAGTCCCTGA...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | GGTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGGAGGGGAGGCAGGAGTaGGGGGTAGATGTGTCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GKQVLLLLLESHGQPHIREGRQE*GVDVSG Trigger: TCCCGACACATCTACCCCCCACTCCTGCCTCCCCTC...CCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000163837.2 |
||
| CDS-3UTR GCA 90 bp | CATCAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGCACAAAAACGGCCAGTaGCAGCTTAACCTGCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: HQDRGSEGWRVLLGRAVRHKNGQ*QLNLLN Trigger: GTTCAGCAGGTTAAGCTGGCACTGGCCGTTTTTGTG...CCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGATCAGGGACTTCCCCTTaGGGTCCAGGCGGAGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: VSRFYCCCWRAMASHTSGSGTSP*GPGGGT Trigger: AGTCCCTCCGCCTGGACCCCAAGGGGAAGTCCCTGA...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | CATCAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGGAGAAGTTCCCAAGCTaGCAGATCACAAAAACGGCC | + |
|
Preference number: 4 (lower is better) Translates to: HQDRGSEGWRVLLGRAVREKFPS*QITKTA Trigger: GGCCGTTTTTGTGATCTGCCAGCTTGGGAACTTCTC...CCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR TCA 90 bp | CAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGTCAGAAATGGTGGCCTaGGGCTCTACCTTGTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QVLLLLLESHGQPHIRTGSEMVA*GSTLSR Trigger: CCTGGACAAGGTAGAGCCTCAGGCCACCATTTCTGA...CCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR TCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTCAGAAATGGTGGCCTaGGGCTCTACCTTGTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGSEMVA*GSTLSR Trigger: CCTGGACAAGGTAGAGCCTCAGGCCACCATTTCTGA...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGTGTGGGGCATGGGCATaGGAAGACCATCGAGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQCGAWA*EDHRGL Trigger: AAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACA...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR TCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGTCAGAAATGGTGGCCTaGGGCTCTACCTTGTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQSEMVA*GSTLSR Trigger: CCTGGACAAGGTAGAGCCTCAGGCCACCATTTCTGA...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | GCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGCTTCTCCCTCGTCTTTaGATCCCGAATCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: AGFIVAAGEPWPATHQDRLLPRL*IPNLHL Trigger: GAGGTGGAGATTCGGGATGCAAAGACGAGGGAGAAG...CCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGCTTCTCCCTCGTCTTTaGATCCCGAATCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGLLPRL*IPNLHL Trigger: GAGGTGGAGATTCGGGATGCAAAGACGAGGGAGAAG...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | CAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGAGCGTAATAAGCCATCCATaGAGCAAAGCCCCAATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: QDRGSEGWRVLLGRAVRSVISHP*SKAPIV Trigger: TACTATTGGGGCTTTGCTGCATGGATGGCTTATTAC...GCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | GCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGAGAAGAGGGCCACTaGGACACACTGAGTCAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: AGFIVAAGEPWPATHQDRGEEGH*DTLSQD Trigger: ATCTTGACTCAGTGTGTCCCAGTGGCCCTCTTCTCC...CCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGCTGCTTTGTGGGGCATaGGCATGGGAAGACCATCGA | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQLLCGA*AWEDHR Trigger: TCGATGGTCTTCCCATGCCCATGCCCCACAAAGCAG...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTTCTTGGCTGCTTTGTaGGGCATGGGCATGGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGFLAAL*GMGMGR Trigger: TCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAA...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGCTTCTCCCTCGTCTTTaGATCCCGAATCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQLLPRL*IPNLHL Trigger: GAGGTGGAGATTCGGGATGCAAAGACGAGGGAGAAG...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | CATCAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGGTAATAAGCCATCCATaGAGCAAAGCCCCAATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: HQDRGSEGWRVLLGRAVRVISHP*SKAPIV Trigger: TACTATTGGGGCTTTGCTGCATGGATGGCTTATTAC...CCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | GCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGCACAAAAACGGCCAGTaGCAGCTTAACCTGCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: AGFIVAAGEPWPATHQDRHKNGQ*QLNLLN Trigger: GTTCAGCAGGTTAAGCTGGCACTGGCCGTTTTTGTG...CCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | GCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGAGAAGTTCCCAAGCTaGCAGATCACAAAAACGGCC | + |
|
Preference number: 4 (lower is better) Translates to: AGFIVAAGEPWPATHQDREKFPS*QITKTA Trigger: GGCCGTTTTTGTGATCTGCCAGCTTGGGAACTTCTC...CCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGAGAAGAGGGCCACTaGGACACACTGAGTCAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQGEEGH*DTLSQD Trigger: ATCTTGACTCAGTGTGTCCCAGTGGCCCTCTTCTCC...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR TCA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGAAAAGGCATGGTTCCGTaGGAGAATCGGTGCACGAAG | + |
|
Preference number: 4 (lower is better) Translates to: VSRFYCCCWRAMASHTSGKGMVP*ENRCTK Trigger: CTTCGTGCACCGATTCTCTCACGGAACCATGCCTTT...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACTTCTCCCTCGTCTTTaGATCCCGAATCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: VSRFYCCCWRAMASHTSGLLPRL*IPNLHL Trigger: GAGGTGGAGATTCGGGATGCAAAGACGAGGGAGAAG...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | AAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAAGAGTGTGGCTGTGGTaGCCACAGGAAGCTTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KQVLLLLLESHGQPHIRTRVWLW*PQEASV Trigger: TACAGAAGCTTCCTGTGGGCACCACAGCCACACTCT...TGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | GGTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGCACAAAAACGGCCAGTaGCAGCTTAACCTGCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GKQVLLLLLESHGQPHIRHKNGQ*QLNLLN Trigger: GTTCAGCAGGTTAAGCTGGCACTGGCCGTTTTTGTG...CCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTTTATGCTTCTTGGCTaGTTTGTGGGGCATGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGFMLLG*FVGHGH Trigger: ATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAA...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTGTTTCGCAAAGGCATaGTTCCGTGAGAGAATCGGT | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGCFAKA*FRERIG Trigger: ACCGATTCTCTCACGGAACCATGCCTTTGCGAAACA...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGAGAAGTTCCCAAGCTaGCAGATCACAAAAACGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQEKFPS*QITKTA Trigger: GGCCGTTTTTGTGATCTGCCAGCTTGGGAACTTCTC...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGAGGAGAAGAGGGCCACTaGGACACACTGAGTCAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: VSRFYCCCWRAMASHTSGGEEGH*DTLSQD Trigger: ATCTTGACTCAGTGTGTCCCAGTGGCCCTCTTCTCC...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGAGAAGAGGGCCACTaGGACACACTGAGTCAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: KQVLLLLLESHGQPHIRTGEEGH*DTLSQD Trigger: ATCTTGACTCAGTGTGTCCCAGTGGCCCTCTTCTCC...TGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGCCTTTTTATGCTTCTTaGCTGCTTTGTGGGGCATGG | + |
|
Preference number: 4 (lower is better) Translates to: RFYCCCWRAMASHTSGQGPFYAS*LLCGAW Trigger: CCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGG...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACACAAAAACGGCCAGTaGCAGCTTAACCTGCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: VSRFYCCCWRAMASHTSGHKNGQ*QLNLLN Trigger: GTTCAGCAGGTTAAGCTGGCACTGGCCGTTTTTGTG...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | CAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGAGGACAGCCTTTTTATaGTTCTTGGCTGCTTTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QVLLLLLESHGQPHIRTGRTAFL*FLAALW Trigger: CCACAAAGCAGCCAAGAAGCATAAAAAGGCTGTCCT...CCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | CAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTAATAAGCCATCCATaGAGCAAAGCCCCAATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: QVLLLLLESHGQPHIRTGVISHP*SKAPIV Trigger: TACTATTGGGGCTTTGCTGCATGGATGGCTTATTAC...CCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CCA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGATGTTTCGCAAAGGCATaGTTCCGTGAGAGAATCGGT | + |
|
Preference number: 4 (lower is better) Translates to: VSRFYCCCWRAMASHTSGCFAKA*FRERIG Trigger: ACCGATTCTCTCACGGAACCATGCCTTTGCGAAACA...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | AGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGTAATAAGCCATCCATaGAGCAAAGCCCCAATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: SRFYCCCWRAMASHTSGQVISHP*SKAPIV Trigger: TACTATTGGGGCTTTGCTGCATGGATGGCTTATTAC...CTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR GCA 90 bp | AAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGTAATAAGCCATCCATaGAGCAAAGCCCCAATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: KQVLLLLLESHGQPHIRTVISHP*SKAPIV Trigger: TACTATTGGGGCTTTGCTGCATGGATGGCTTATTAC...TGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000212005.2 ENSMUST00000212990.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | AGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGGGTTCAGGGACTTCCCCTaGGGGTCCAGGCGGAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: RFYCCCWRAMASHTSGQGFRDFP*GSRRRD Trigger: GTCCCTCCGCCTGGACCCCAAGGGGAAGTCCCTGAA...CCCCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000238997.2 |
||
| CDS CCA 90 bp | AGAAGAGGACAGCCTTTTTATGCTTCTTGGCTGCTTTGTGGGGCATaGGCATGGGAAGACCATCGAGGCCTTGGTGGGCCTCTTTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: RRGQPFYASWLLCGA*AWEDHRGLGGPLWL Trigger: CAGCCAAAGAGGCCCACCAAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGGCTGTCCTCTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | AAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACACCTTGGTGGGCCTCTTaGGCTGCCATGCTCAAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: KQVLLLLLESHGQPHIRTPWWAS*AAMLKL Trigger: CAGCTTGAGCATGGCAGCCAAAGAGGCCCACCAAGG...TGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | GGTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGTGCTTCTTGGCTGCTTaGTGGGGCATGGGCATGGGA | + |
|
Preference number: 5 (lower is better) Translates to: GKQVLLLLLESHGQPHIRCFLAA*WGMGMG Trigger: TCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCA...CCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | CATCAGGACAGGGGCAGTGAGGGGTGGAGAGTATTACTGGGCAGAGCCGTGAGGTTGGTGAAAAGGGTCTaGATTTCAGAAATGGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: HQDRGSEGWRVLLGRAVRLVKRV*ISEMVA Trigger: GGCCACCATTTCTGAAATCAAGACCCTTTTCACCAA...CCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS CCA 90 bp | CCCGAATCTCCACCTCAAAGAAGAGGACAGCCTTTTTATGCTTCTTaGCTGCTTTGTGGGGCATGGGCATGGGAAGACCATCGAGGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: PESPPQRRGQPFYAS*LLCGAWAWEDHRGL Trigger: AAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGGCTGTCCTCTTCTTTGAGGTGGAGATTCGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS GCA 90 bp | TTTGCATCCCGAATCTCCACCTCAAAGAAGAGGACAGCCTTTTTATaGTTCTTGGCTGCTTTGTGGGGCATGGGCATGGGAAGACCATCG | + |
|
Preference number: 5 (lower is better) Translates to: FASRISTSKKRTAFL*FLAALWGMGMGRPS Trigger: CGATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGGCTGTCCTCTTCTTTGAGGTGGAGATTCGGGATGCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | GCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACAGGTTGGTGAAAAGGGTCTaGATTTCAGAAATGGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: AGFIVAAGEPWPATHQDRLVKRV*ISEMVA Trigger: GGCCACCATTTCTGAAATCAAGACCCTTTTCACCAA...CCTGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | AAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGACATTGGTGAAAAGGGTCTaGATTTCAGAAATGGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KQVLLLLLESHGQPHIRTLVKRV*ISEMVA Trigger: GGCCACCATTTCTGAAATCAAGACCCTTTTCACCAA...TGTCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS-3UTR CAA 90 bp | GTAAGCAGGTTTTATTGTTGCTGCTGGAGAGCCATGGCCAGCCACACATCAGGATTGGTGAAAAGGGTCTaGATTTCAGAAATGGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: VSRFYCCCWRAMASHTSGLVKRV*ISEMVA Trigger: GGCCACCATTTCTGAAATCAAGACCCTTTTCACCAA...TCCTGATGTGTGGCTGGCCATGGCTCTCCAGCAGCAACAATAAAACCTGCTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019382.17 ENSMUST00000163837.2 ENSMUST00000165740.9 ENSMUST00000238997.2 |
||
| CDS GCA 72 bp | TGTGCTGAGAGGCAACAAGCCGATGAGGGAAAGGCATaGGGAGGCATGCGGGCCCAGGTCACATCCAGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: CAERQQADEGKA*GGMRAQVTSRG Trigger: CCCTCTGGATGTGACCTGGGCCCGCATGCCTCCGCATGCCTTTCCCTCATCGGCTTGTTGCCTCTCAGCACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163837.2 |
||
| CDS CCA 72 bp | TGGGGCATGGGCATGGGAAGACCATCGAGGCCTTGGTaGGCCTCTTTGGCTGCCATGCTCAAGCTGATATCC | + |
|
Preference number: 6 (lower is better) Translates to: WGMGMGRPSRPW*ASLAAMLKLIS Trigger: GGATATCAGCTTGAGCATGGCAGCCAAAGAGGCCCACCAAGGCCTCGATGGTCTTCCCATGCCCATGCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CCA 72 bp | TTGTGGGGCATGGGCATGGGAAGACCATCGAGGCCTTaGTGGGCCTCTTTGGCTGCCATGCTCAAGCTGATA | + |
|
Preference number: 6 (lower is better) Translates to: LWGMGMGRPSRP*WASLAAMLKLI Trigger: TATCAGCTTGAGCATGGCAGCCAAAGAGGCCCACCAAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CAA 72 bp | TTTGTGGGGCATGGGCATGGGAAGACCATCGAGGCCTaGGTGGGCCTCTTTGGCTGCCATGCTCAAGCTGAT | + |
|
Preference number: 6 (lower is better) Translates to: FVGHGHGKTIEA*VGLFGCHAQAD Trigger: ATCAGCTTGAGCATGGCAGCCAAAGAGGCCCACCAAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CCA 72 bp | CAGCCTTTTTATGCTTCTTGGCTGCTTTGTGGGGCATaGGCATGGGAAGACCATCGAGGCCTTGGTGGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: QPFYASWLLCGA*AWEDHRGLGGP Trigger: AGGCCCACCAAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CCA 72 bp | TTTTATGCTTCTTGGCTGCTTTGTGGGGCATGGGCATaGGAAGACCATCGAGGCCTTGGTGGGCCTCTTTGG | + |
|
Preference number: 6 (lower is better) Translates to: FYASWLLCGAWA*EDHRGLGGPLW Trigger: CCAAAGAGGCCCACCAAGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CAA 72 bp | AGGGACTGGCGGGCAGGATACCACTGCGGGTGTGTCTaGGTGAAAAGGGTCTTGATTTCAGAAATGGTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: RDWRAGYHCGCV*VKRVLISEMVA Trigger: GGCCACCATTTCTGAAATCAAGACCCTTTTCACCAAGACACACCCGCAGTGGTATCCTGCCCGCCAGTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019382.17 ENSMUST00000238997.2 |
||
| CDS CAA 90 bp | TCCCGAATCTCCACCTCAAAGAAGAGGACAGCCTTTTTATGCTTCTaGGCTGCTTTGTGGGGCATGGGCATGGGAAGACCATCGAGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: SRISTSKKRTAFLCF*AALWGMGMGRPSRP Trigger: AGGCCTCGATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGGCTGTCCTCTTCTTTGAGGTGGAGATTCGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CCA 72 bp | CCACCTCAAAGAAGAGGACAGCCTTTTTATGCTTCTTaGCTGCTTTGTGGGGCATGGGCATGGGAAGACCAT | + |
|
Preference number: 6 (lower is better) Translates to: PPQRRGQPFYAS*LLCGAWAWEDH Trigger: ATGGTCTTCCCATGCCCATGCCCCACAAAGCAGCCAAGAAGCATAAAAAGGCTGTCCTCTTCTTTGAGGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000238861.2 ENSMUST00000238997.2 |
||
| CDS CAA 72 bp | GGAGCAGGAATAGGTGTGTCGGGAGACTCACGTGTCTaGGTGAAAAGGGTCTTGATTTCAGAAATGGTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: GAGIGVSGDSRV*VKRVLISEMVA Trigger: GGCCACCATTTCTGAAATCAAGACCCTTTTCACCAAGACACGTGAGTCTCCCGACACACCTATTCCTGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163837.2 |
||