RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TEC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029217

Ensembl transcript IDs: ENSMUST00000071944.13, ENSMUST00000073843.13, ENSMUST00000113594.8, ENSMUST00000126481.8, ENSMUST00000138842.8, ENSMUST00000149533.8, ENSMUST00000155342.8

Found 382 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTCACCATaGTTACCACTTCGTAATTGGTGTTCTTCTCAAAGGGCATCCTGC +
Preference number: 1 (lower is better)
Translates to: WKPALAGGGGGHESP*LPLRNWCSSQRASC
Trigger: GCAGGATGCCCTTTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 90 bp CGCTGGGGCTCCCGTGTTGTAAGCAGAGCAGTCTATACTCCCAGGTaGCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTG +
Preference number: 1 (lower is better)
Translates to: RWGSRVVSRAVYTPR*QENCVPMAHHFFLL
Trigger: CAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCTGGGAGTATAGACTGCTCTGCTTACAACACGGGAGCCCCAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 90 bp CCAGCATCTCAGCATCACCTCATACAAATATTTGGAAGCCAGCTTTaGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTC +
Preference number: 1 (lower is better)
Translates to: PASQHHLIQIFGSQL*PVEAVATSHHGYHF
Trigger: GAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGTGATGCTGAGATGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 90 bp GCAGAGCAGTCTATACTCCCAGGTGCCAAGAGAATTGCGTTCCGATaGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCCACCAT +
Preference number: 1 (lower is better)
Translates to: AEQSILPGAKRIAFR*HTISSSCLGNWGHH
Trigger: ATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCTGGGAGTATAGACTGCTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 90 bp CTGCTAGCATCAGCTAGCATAGTCCCATGTTCATCTCCTGAGGCCTaGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAA +
Preference number: 1 (lower is better)
Translates to: LLASASIVPCSSPEA*AQSLVYMAGTQTLE
Trigger: TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGACTATGCTAGCTGATGCTAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATaGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCT +
Preference number: 1 (lower is better)
Translates to: VDNTPGPGLCKSQRA*KRRWDMTRPHHNHP
Trigger: AGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 90 bp CGTGTTGTAAGCAGAGCAGTCTATACTCCCAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTG +
Preference number: 1 (lower is better)
Translates to: RVVSRAVYTPRCQEN*VPMAHHFFLLPWKL
Trigger: CAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCTGGGAGTATAGACTGCTCTGCTTACAACACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 90 bp GCTCTCCACCAATGGAGGTCATTCTTTTCCAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGGTCATGTGCTTCCGTCGCTTGGAAG +
Preference number: 1 (lower is better)
Translates to: ALHQWRSFFSRMIYS*PLSNLRSCASVAWK
Trigger: CTTCCAAGCGACGGAAGCACATGACCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000149533.8
ENSMUST00000155342.8
3UTR CCA 90 bp TTCCTCTGGGGGAATTGGTGGAGGAGGCCTTCTCTTCTTTATTTCTaGCGCGGGAGGCAGGGTCTTTCTTATACTACTCTCAAAAAGATT +
Preference number: 1 (lower is better)
Translates to: FLWGNWWRRPSLLYF*RGRQGLSYTTLKKI
Trigger: AATCTTTTTGAGAGTAGTATAAGAAAGACCCTGCCTCCCGCGCCAGAAATAAAGAAGAGAAGGCCTCCTCCACCAATTCCCCCAGAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR GCA 90 bp TGCAAACCAAGGGCGCACACTTACTTCCGTTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATTTCTGCAGTACCACTCATATTGATC +
Preference number: 1 (lower is better)
Translates to: CKPRAHTYFRSEELF*FASVGISAVPLILI
Trigger: GATCAATATGAGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGTAAGTGTGCGCCCTTGGTTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR CCA 90 bp GTATTTCTGCAGTACCACCCATACTTATCTCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGGATGATATACTCTTGGCCTCTCTCT +
Preference number: 1 (lower is better)
Translates to: VFLQYHPYLSLALHQ*RSFFSRMIYSWPLS
Trigger: AGAGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGTGGTACTGCAGAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR CCA 90 bp GAAGTCATACATCGCTACAACGATTTCTTCAGTATTTTCTTCCTCTaGGGGAATTGGTGGAGGAGGCCTTCTCTTCTTTATTTCTGGCGC +
Preference number: 1 (lower is better)
Translates to: EVIHRYNDFFSIFFL*GNWWRRPSLLYFWR
Trigger: GCGCCAGAAATAAAGAAGAGAAGGCCTCCTCCACCAATTCCCCCAGAGGAAGAAAATACTGAAGAAATCGTTGTAGCGATGTATGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR CCA 90 bp TACTCTTGGCCTCTCTCTAACCTGAGGTCATGTGCTTCCGTCGCTTaGAAGTCATACATCGCTACAACGATTTCTTCAGTATTTTCTTCC +
Preference number: 1 (lower is better)
Translates to: YSWPLSNLRSCASVA*KSYIATTISSVFSS
Trigger: GGAAGAAAATACTGAAGAAATCGTTGTAGCGATGTATGACTTCCAAGCGACGGAAGCACATGACCTCAGGTTAGAGAGAGGCCAAGAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR CCA 90 bp GGGATATATCCTTCACTCCCATACTTATCTCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGGATGATATACTCTTGGCCTCTCTCT +
Preference number: 1 (lower is better)
Translates to: GIYPSLPYLSLALHQ*RSFFSRMIYSWPLS
Trigger: AGAGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGAGTGAAGGATATATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000149533.8
ENSMUST00000155342.8
3UTR GCA 90 bp CACCATAAAACCACCTTCTTTATCTTCCGTTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATTTCTGCAGTACCACCCATACTTATC +
Preference number: 1 (lower is better)
Translates to: HHKTTFFIFRSEELF*FASVGISAVPPILI
Trigger: GATAAGTATGGGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGATAAAGAAGGTGGTTTTATGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR TCA 90 bp AATACTTCTTTGGGGATGTTGCTGTTTCCTTTATGTGATAATGCCTaGAACCTGATGAGCCTTCTCCCCCAAACTTTGTGTAAAGGGAGA +
Preference number: 1 (lower is better)
Translates to: NTSLGMLLFPLCDNA*NLMSLLPQTLCKGR
Trigger: TCTCCCTTTACACAAAGTTTGGGGGAGAAGGCTCATCAGGTTTCAGGCATTATCACATAAAGGAAACAGCAACATCCCCAAAGAAGTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 90 bp CACCATAAAACCACCTTCTTTATCTTCCGTTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATTTCTGCAGTACCACTCATATTGATC +
Preference number: 1 (lower is better)
Translates to: HHKTTFFIFRSEELF*FASVGISAVPLILI
Trigger: GATCAATATGAGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGATAAAGAAGGTGGTTTTATGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155342.8
3UTR TCA 90 bp TGCAGTACCACTCATATTGATCTAAGTTGTTGGATTTCTTCCCTGTaGCGTAATTACTTGGGATATATCCTTCACTCCCATACTTATCTC +
Preference number: 1 (lower is better)
Translates to: CSTTHIDLSCWISSL*RNYLGYILHSHTYL
Trigger: GAGATAAGTATGGGAGTGAAGGATATATCCCAAGTAATTACGTCACAGGGAAGAAATCCAACAACTTAGATCAATATGAGTGGTACTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000149533.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGGTACCGCAGCCTGGTaGCAAGCCCTGCCGCATTGT +
Preference number: 2 (lower is better)
Translates to: WPVEAVATSHHGYHFVIGGTAAW*QALPHC
Trigger: ACAATGCGGCAGGGCTTGTCACCAGGCTGCGGTACC...ACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCAGGTACCGCAGCCTGGTaGCAAGCCCTGCCGCATTGT +
Preference number: 2 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAGTAAW*QALPHC
Trigger: ACAATGCGGCAGGGCTTGTCACCAGGCTGCGGTACC...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCCCATGTTCATCTCCTaGGGCCTGGGCACAGAGCCT +
Preference number: 2 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAPMFIS*GLGTEP
Trigger: AGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp GCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCAT +
Preference number: 2 (lower is better)
Translates to: AKQPLSSGWISSRCAGAPRCQEN*VPMAHH
Trigger: ATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCT...GGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAATGGATCAGCAGCAGATaGGCTGGGGCTCCCGTGTTG +
Preference number: 2 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLEWISSR*AGAPVL
Trigger: CAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCA...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGCAGCATGTCTCTGCTaGAATGGCCTTGTCTCTGCC +
Preference number: 2 (lower is better)
Translates to: WPVEAVATSHHGYHFVIGAACLC*NGLVSA
Trigger: GGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGC...ACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTATGGATCAGCAGCAGATaGGCTGGGGCTCCCGTGTTG +
Preference number: 2 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLWISSR*AGAPVL
Trigger: CAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCA...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTCCCTCTGGTCTCTCTTaGCAGCATCTCAGCATCACC +
Preference number: 2 (lower is better)
Translates to: WPVEAVATSHHGYHFVIGPSGLS*QHLSIT
Trigger: GGTGATGCTGAGATGCTGGCAAGAGAGACCAGAGGG...ACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCCACTGAGCTCAGGCTaGATCAGCAGCAGATGCGCT +
Preference number: 2 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAPLSSG*ISSRCA
Trigger: AGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp ATGGCGCCTTCCCGGATAGCTTTGATGGCCACTTTGTACTGGGCCCGCCACTTGGCATGGAAGAGACGCTaGGACATGACTCGTCCCCAT +
Preference number: 2 (lower is better)
Translates to: MAPSRIALMATLYWARHLAWKRR*DMTRPH
Trigger: ATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGC...CAAGTGGCGGGCCCAGTACAAAGTGGCCATCAAAGCTATCCGGGAAGGCGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGCCCATGTTCATCTCCTaGGGCCTGGGCACAGAGCCT +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMPMFIS*GLGTEP
Trigger: AGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGG...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCAGCAGCATGTCTCTGCTaGAATGGCCTTGTCTCTGCC +
Preference number: 2 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAAACLC*NGLVSA
Trigger: GGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGC...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTCCTTCACAGACATCTTaGCACATGCTTAGCAGCATG +
Preference number: 2 (lower is better)
Translates to: KAATELRLDQQQMRWGSRPSQTS*HMLSSM
Trigger: CATGCTGCTAAGCATGTGTCAAGATGTCTGTGAAGG...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTGGGCCCGCCACTTaGCAAGCCTCACCACTCCAA +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMTGPAT*QASPLQ
Trigger: TTGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGT...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp ATACAAATATTTGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTCACCCTGGGCACAGAGCCTaGTATACATGGCTGGCACTC +
Preference number: 2 (lower is better)
Translates to: IQIFGSQLWPVEAVATSHPGHRA*YTWLAL
Trigger: GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGG...GTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAATCATCTCCTGAGGCCTaGGCACAGAGCCTGGTATAC +
Preference number: 2 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLESSPEA*AQSLVY
Trigger: GTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGA...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTGCATGGAAGAGACGCTaGGACATGACTCGTCCCCAT +
Preference number: 2 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAAWKRR*DMTRPH
Trigger: ATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGC...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGG +
Preference number: 2 (lower is better)
Translates to: PAKQPLSSGWISSRCAGARMIYS*PLSNLR
Trigger: CCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCT...AGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CAA 90 bp TCTGGTCTCTCTTGCCAGCATCTCAGCATCACCTCATACAAATATTaGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTCACC +
Preference number: 2 (lower is better)
Translates to: SGLSCQHLSITSYKY*EASFGRWRRWPRVT
Trigger: GGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGTGATGCTGAGATGCTGGCAAGAGAGACCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCCCTCTGGTCTCTCTTGCCACGGCAAAGCAGCCACTaGGCTCAGGCTGGATCAGCA +
Preference number: 2 (lower is better)
Translates to: YRTQQVFKGRPSLWSLLPRQSSH*AQAGSA
Trigger: TGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCG...TGGCAAGAGAGACCAGAGGGAAGGCCTTCCTTTGAAGACTTGCTGCGTACGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTATCAAGTCACCAGCTCTaGGAGACCATCTGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLSSHQL*ETICAA
Trigger: GGCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGA...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GTACCGCAGCCTGGTGACAAGCCCTGCCGCATTGTGCTTGTGATATTCAATGATCCCATGTTCATCTCCTaGGGCCTGGGCACAGAGCCT +
Preference number: 2 (lower is better)
Translates to: VPQPGDKPCRIVLVIFNDPMFIS*GLGTEP
Trigger: AGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGG...ATCATTGAATATCACAAGCACAATGCGGCAGGGCTTGTCACCAGGCTGCGGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCACCATTTCTTCCTCTTaGCTTGGAAACTGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPTISSS*LGNWGH
Trigger: GTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGT...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACACCACTGAGCTCAGGCTaGATCAGCAGCAGATGCGCT +
Preference number: 2 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTPLSSG*ISSRCA
Trigger: AGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGG...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCCTGGGCACAGAGCCTaGTATACATGGCTGGCACTC +
Preference number: 2 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNPGHRA*YTWLAL
Trigger: GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGG...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTATCATCTCCTGAGGCCTaGGCACAGAGCCTGGTATAC +
Preference number: 2 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLSSPEA*AQSLVY
Trigger: GTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGA...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CTTTGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGCAGCCAGGTCTCTGTaGATGAAGCTGTTTCTCTCC +
Preference number: 2 (lower is better)
Translates to: LWPVEAVATSHHGYHFVIAARSL*MKLFLS
Trigger: GGAGAGAAACAGCTTCATCCACAGAGACCTGGCTGC...AATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTAATTAAACACTTCTaGGGGACACCACTTCACAGG +
Preference number: 2 (lower is better)
Translates to: KAATELRLDQQQMRWGSRVIKHF*GTPLHR
Trigger: CCTGTGAAGTGGTGTCCCCCAGAAGTGTTTAATTAC...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CAA 90 bp GCCAGCATCTCAGCATCACCTCATACAAATATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTT +
Preference number: 2 (lower is better)
Translates to: ASISASPHTNIWKPA*AGGGGGHESPWLPL
Trigger: AAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGTGATGCTGAGATGCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATCAAGTCACCAGCTCTaGGAGACCATCTGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTSSHQL*ETICAA
Trigger: GGCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGA...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTGTGTACAAGCCTGGTTaGCTGGAGTCTCTCACCATA +
Preference number: 2 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAVYKPG*LESLTI
Trigger: TATGGTGAGAGACTCCAGTCAACCAGGCTTGTACAC...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATCATCTCCTGAGGCCTaGGCACAGAGCCTGGTATAC +
Preference number: 2 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTSSPEA*AQSLVY
Trigger: GTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGA...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGGCATGGAAGAGACGCTaGGACATGACTCGTCCCCAT +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMAWKRR*DMTRPH
Trigger: ATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGC...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CTCATACAAATATTTGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTGCAGCCAGGTCTCTGTaGATGAAGCTGTTTCTCTCC +
Preference number: 2 (lower is better)
Translates to: LIQIFGSQLWPVEAVATSAARSL*MKLFLS
Trigger: GGAGAGAAACAGCTTCATCCACAGAGACCTGGCTGC...ACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCAGGCCACGAGTCACCATaGTTACCACTTCGTAATTGG +
Preference number: 2 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAGHESP*LPLRNW
Trigger: CCAATTACGAAGTGGTAACCATGGTGACTCGTGGCC...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGGCAAAGCAGCCACTaGGCTCAGGCTGGATCAGCA +
Preference number: 2 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRRQSSH*AQAGSA
Trigger: TGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCG...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACCCATGTTCATCTCCTaGGGCCTGGGCACAGAGCCT +
Preference number: 2 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRPMFIS*GLGTEP
Trigger: AGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGG...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CTCATACAAATATTTGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTACCATTTCTTCCTCTTaGCTTGGAAACTGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: LIQIFGSQLWPVEAVATSTISSS*LGNWGH
Trigger: GTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGT...ACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTAAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCAT +
Preference number: 2 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLRCQEN*VPMAHH
Trigger: ATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCT...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGTGGATCAGCAGCAGATaGGCTGGGGCTCCCGTGTTG +
Preference number: 2 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWWISSR*AGAPVL
Trigger: CAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCA...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGGAGCTGTTCTGCTTTaGTTCTGTTGGTATTTCTGC +
Preference number: 2 (lower is better)
Translates to: WPVEAVATSHHGYHFVIGGAVLL*FCWYFC
Trigger: GCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCC...ACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCGCATGGAAGAGACGCTaGGACATGACTCGTCCCCAT +
Preference number: 2 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSAWKRR*DMTRPH
Trigger: ATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGC...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTACTACGTATCCAGGTaGGTTCCTGCTTTTCCTAGA +
Preference number: 2 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLYYVSR*VPAFPR
Trigger: TCTAGGAAAAGCAGGAACCCACCTGGATACGTAGTA...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGATGTCTCTGCTGAAATaGCCTTGTCTCTGCCGGAGG +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMMSLLK*PCLCRR
Trigger: CCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACAT...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCCCTCTGGTCTCTCTTGCCAGGAAGGCCTTCCCTCTaGTCTCTCTTGCCAGCATCT +
Preference number: 2 (lower is better)
Translates to: YRTQQVFKGRPSLWSLLPGRPSL*SLLPAS
Trigger: AGATGCTGGCAAGAGAGACCAGAGGGAAGGCCTTCC...TGGCAAGAGAGACCAGAGGGAAGGCCTTCCTTTGAAGACTTGCTGCGTACGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCGGAAGGCCTTCCCTCTaGTCTCTCTTGCCAGCATCT +
Preference number: 2 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSGRPSL*SLLPAS
Trigger: AGATGCTGGCAAGAGAGACCAGAGGGAAGGCCTTCC...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTGGCACTCAAACCCTTaGAGAAATGAGCAAAATGAG +
Preference number: 2 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLWHSNP*RNEQNE
Trigger: CTCATTTTGCTCATTTCTTCAAGGGTTTGAGTGCCA...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TCTTCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCCCCATGTTCATCTCCTaGGGCCTGGGCACAGAGCCT +
Preference number: 2 (lower is better)
Translates to: SSSCLGNWGHHSSSKSFFPMFIS*GLGTEP
Trigger: AGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGG...GAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp AAGCCTCACCACTCCAAACAGTCCGCTCCCCAACTCTCTCATAAAGGTCAGCTCGTGTACAAGCCTGGTTaGCTGGAGTCTCTCACCATA +
Preference number: 2 (lower is better)
Translates to: KPHHSKQSAPQLSHKGQLVYKPG*LESLTI
Trigger: TATGGTGAGAGACTCCAGTCAACCAGGCTTGTACAC...GAGCTGACCTTTATGAGAGAGTTGGGGAGCGGACTGTTTGGAGTGGTGAGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCGCATCCTGCCTTCTGTaGATATTTCCCACATTAGCA +
Preference number: 2 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALASCLL*IFPTLA
Trigger: TGCTAATGTGGGAAATATTCACAGAAGGCAGGATGC...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCAT +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMRCQEN*VPMAHH
Trigger: ATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCT...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTAATGAGCAAAATGAGTaGTTCAAGTCACCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLNEQNE*FKSPAL
Trigger: CAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACCACTGAGCTCAGGCTaGATCAGCAGCAGATGCGCT +
Preference number: 2 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRPLSSG*ISSRCA
Trigger: AGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGG...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGG +
Preference number: 2 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALRMIYS*PLSNLR
Trigger: CCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCT...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GGGAATTGGTGGAGGAGGCCTTCTCTTCTTTATTTCTGGCGCGGGAGGCAGGGTAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGG +
Preference number: 2 (lower is better)
Translates to: GNWWRRPSLLYFWRGRQGRMIYS*PLSNLR
Trigger: CCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCT...ACCCTGCCTCCCGCGCCAGAAATAAAGAAGAGAAGGCCTCCTCCACCAATTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR-3UTR CCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACACTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGG +
Preference number: 2 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTLALHQ*RSFFSR
Trigger: CCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAG...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGGACAGTGTACAAGCCTaGTTGACTGGAGTCTCTCAC +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMDSVQA*LTGVSH
Trigger: GTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTC...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCATGTCTCTGCTGAAATaGCCTTGTCTCTGCCGGAGG +
Preference number: 2 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSMSLLK*PCLCRR
Trigger: CCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACAT...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCAGTAATTAAACACTTCTaGGGGACACCACTTCACAGG +
Preference number: 2 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAVIKHF*GTPLHR
Trigger: CCTGTGAAGTGGTGTCCCCCAGAAGTGTTTAATTAC...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCCCTCATACAAATATTTaGAAGCCAGCTTTGGCCGGT +
Preference number: 2 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALPHTNI*KPALAG
Trigger: ACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGG...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp AACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGTGTACAAGCCTGGTTaGCTGGAGTCTCTCACCATA +
Preference number: 2 (lower is better)
Translates to: NTPGPGLCKSQRAWKRRWVYKPG*LESLTI
Trigger: TATGGTGAGAGACTCCAGTCAACCAGGCTTGTACAC...CCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAATTATGTGATAATGCCTaGAACCTGATGAGCCTTCTC +
Preference number: 2 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLELCDNA*NLMSLL
Trigger: GAGAAGGCTCATCAGGTTTCAGGCATTATCACATAA...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CCAAGCCTCACCACTCCAAACAGTCCGCTCCCCAACTCTCTCATAAAGGTCAGCCATAAAGGTCAGCTCTaGTGGGTTAATCTCCCACTT +
Preference number: 2 (lower is better)
Translates to: PSLTTPNSPLPNSLIKVSHKGQL*WVNLPL
Trigger: AAGTGGGAGATTAACCCATCAGAGCTGACCTTTATG...GCTGACCTTTATGAGAGAGTTGGGGAGCGGACTGTTTGGAGTGGTGAGGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCCCTCTGGTCTCTCTTGCCAACCATTTCTTCCTCTTaGCTTGGAAACTGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: YRTQQVFKGRPSLWSLLPTISSS*LGNWGH
Trigger: GTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGT...TGGCAAGAGAGACCAGAGGGAAGGCCTTCCTTTGAAGACTTGCTGCGTACGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGTGGATCAGCAGCAGATaGGCTGGGGCTCCCGTGTTG +
Preference number: 2 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLWISSR*AGAPVL
Trigger: CAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCA...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCTTCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCCCTGGGCACAGAGCCTaGTATACATGGCTGGCACTC +
Preference number: 2 (lower is better)
Translates to: SSSCLGNWGHHSSSKSFFPGHRA*YTWLAL
Trigger: GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGG...GAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GGGATATATCCTTCACTCCCATACTTATCTCTCGCTCTCCACCAATGGAGGTCATCATCTCCTGAGGCCTaGGCACAGAGCCTGGTATAC +
Preference number: 2 (lower is better)
Translates to: GIYPSLPYLSLALHQWRSSSPEA*AQSLVY
Trigger: GTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGA...TGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGAGTGAAGGATATATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CCAAGCCTCACCACTCCAAACAGTCCGCTCCCCAACTCTCTCATAAAGGTCAGCCTGCTTTGCTTCTGTTaGTATTTCTGCAGTACCACC +
Preference number: 2 (lower is better)
Translates to: PSLTTPNSPLPNSLIKVSLLCFC*YFCSTT
Trigger: GGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAG...GCTGACCTTTATGAGAGAGTTGGGGAGCGGACTGTTTGGAGTGGTGAGGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR-3UTR CCA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTCAGGTAATACTTCTTTaGGGATGTTGCTGTTTCCTT +
Preference number: 2 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLQVILL*GCCCFL
Trigger: AAGGAAACAGCAACATCCCCAAAGAAGTATTACCTG...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAAGAGCTGTACCAGCTTaGGGTGTGTCAGCTTCATCA +
Preference number: 2 (lower is better)
Translates to: GGGHESPWLPLRNWCSSQRAVPA*GVSASS
Trigger: TGATGAAGCTGACACACCCCAAGCTGGTACAGCTCT...TTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCTGCTTTGCTTCTGTTaGTATTTCTGCAGTACCACT +
Preference number: 2 (lower is better)
Translates to: EETLGHDSSPSQPPWLSALLCFC*YFCSTT
Trigger: AGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155342.8
3UTR CAA 90 bp CCGTGTTGTAAGCAGAGCAGTCTATACTCCCAGGTGCCAAGAGAATaGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACT +
Preference number: 2 (lower is better)
Translates to: PCCKQSSLYSQVPRE*RSDGTPFLPLALET
Trigger: AGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCTGGGAGTATAGACTGCTCTGCTTACAACACGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCCGGCAAAGCAGCCACTaGGCTCAGGCTGGATCAGCA +
Preference number: 2 (lower is better)
Translates to: FGKRCFQNRGLLRIQVGSRQSSH*AQAGSA
Trigger: TGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCG...GGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTCGGCAAAGCAGCCACTaGGCTCAGGCTGGATCAGCA +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPRQSSH*AQAGSA
Trigger: TGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCG...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TCACATTCAACTAGTTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCGGCAAAGCAGCCACTaGGCTCAGGCTGGATCAGCA +
Preference number: 2 (lower is better)
Translates to: SHSTSSSIVRSKSSKEGLRQSSH*AQAGSA
Trigger: TGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCG...AAGGCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAACTAGTTGAATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CTCCACCAATGGAGGTCATTCTTTTCCAGGATGATATACTCTTGGCCTCTCTCTTCAAGTCACCAGCTCTaGGAGACCATCTGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: LHQWRSFFSRMIYSWPLSSSHQL*ETICAA
Trigger: GGCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGA...AGAGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACAGCTTGTGATATTCAATaGTCTCAGGAATGGACCCGA +
Preference number: 2 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTACDIQ*SQEWTR
Trigger: TCGGGTCCATTCCTGAGATCATTGAATATCACAAGC...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGGCATCCTGCCTTCTGTaGATATTTCCCACATTAGCA +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMASCLL*IFPTLA
Trigger: TGCTAATGTGGGAAATATTCACAGAAGGCAGGATGC...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp ACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTACCATTTCTTCCTCTTaGCTTGGAAACTGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: TTLQAQVYVKAKGHGRDATISSS*LGNWGH
Trigger: GTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGT...AGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTTTCTGTTGGTATTTCTaGAGTACCACCCATACTTAT +
Preference number: 2 (lower is better)
Translates to: WPVEAVATSHHGYHFVIGFCWYF*STTHTY
Trigger: ATAAGTATGGGTGGTACTGCAGAAATACCAACAGAA...ACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR-3UTR GCA 90 bp ACCTTCATAGTCAGGAGGAGGAAGTGGCCAAATAAAGAGATGGACCTCGGCGGCGGAGCTGTTCTGCTTTaGTTCTGTTGGTATTTCTGC +
Preference number: 2 (lower is better)
Translates to: TFIVRRRKWPNKEMDLGGGAVLL*FCWYFC
Trigger: GCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCC...GCCGCCGAGGTCCATCTCTTTATTTGGCCACTTCCTCCTCCTGACTATGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR-3UTR CCA 90 bp TCTCTGCCGGAGGAAATTCAGAAGGCAGCCCCGTTCCATGAACTCGGTAACGATAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGG +
Preference number: 2 (lower is better)
Translates to: SLPEEIQKAAPFHELGNDRMIYS*PLSNLR
Trigger: CCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCT...ATCGTTACCGAGTTCATGGAACGGGGCTGCCTTCTGAATTTCCTCCGGCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCTTACCACTTCGTAATTaGTGTTCTTCTCAAAGGGCA +
Preference number: 2 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALLPLRN*CSSQRA
Trigger: TGCCCTTTGAGAAGAACACCAATTACGAAGTGGTAA...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGTCAAGTCACCAGCTCTaGGAGACCATCTGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLSSHQL*ETICAA
Trigger: GGCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGA...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGGCACTCAAACCCTTaGAGAAATGAGCAAAATGAG +
Preference number: 2 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTWHSNP*RNEQNE
Trigger: CTCATTTTGCTCATTTCTTCAAGGGTTTGAGTGCCA...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCAAAATCAGATACTTTaGCAACTCCTGCTTCATTCA +
Preference number: 2 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAQNQIL*QLLLHS
Trigger: TGAATGAAGCAGGAGTTGTCAAAGTATCTGATTTTG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAGCATCCTGCCTTCTGTaGATATTTCCCACATTAGCA +
Preference number: 2 (lower is better)
Translates to: GGGHESPWLPLRNWCSSQASCLL*IFPTLA
Trigger: TGCTAATGTGGGAAATATTCACAGAAGGCAGGATGC...TTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCAT +
Preference number: 2 (lower is better)
Translates to: NEQNECFKSPALRDHLCSRCQEN*VPMAHH
Trigger: ATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCT...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCATTCTGTTGGTATTTCTaGAGTACCACCCATACTTAT +
Preference number: 2 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAFCWYF*STTHTY
Trigger: ATAAGTATGGGTGGTACTGCAGAAATACCAACAGAA...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR-3UTR GCA 90 bp GGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAGGAGCTGTTCTGCTTTaGTTCTGTTGGTATTTCTGC +
Preference number: 2 (lower is better)
Translates to: GGGHESPWLPLRNWCSSQGAVLL*FCWYFC
Trigger: GCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCC...TTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCCTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 2 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSLVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138842.8
3UTR-3UTR CCA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGAGAGCCTGGTATACATaGCTGGCACTCAAACCCTTG +
Preference number: 2 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWRAWYT*LALKPL
Trigger: CAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCT...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TACCACCCATACTTATCTCTCGCTCTCCACCAATGGAGGTCATTCTTTTCCAGGGACAGTGTACAAGCCTaGTTGACTGGAGTCTCTCAC +
Preference number: 2 (lower is better)
Translates to: YHPYLSLALHQWRSFFSRDSVQA*LTGVSH
Trigger: GTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTC...CCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGTGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR-3UTR CCA 90 bp ACCTTCATAGTCAGGAGGAGGAAGTGGCCAAATAAAGAGATGGACCTCGGCGGCCTGCTTTGCTTCTGTTaGTATTTCTGCAGTACCACT +
Preference number: 2 (lower is better)
Translates to: TFIVRRRKWPNKEMDLGGLLCFC*YFCSTT
Trigger: AGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAG...GCCGCCGAGGTCCATCTCTTTATTTGGCCACTTCCTCCTCCTGACTATGAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR-3UTR TCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTTCAAGTCACCAGCTCTaGGAGACCATCTGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPSSHQL*ETICAA
Trigger: GGCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGA...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTCAAGTCACCAGCTCTaGGAGACCATCTGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: FGKRCFQNRGLLRIQVGSSSHQL*ETICAA
Trigger: GGCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGA...GGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCCATTCTTTTCCAGGATaGTATACTCTTGGCCTCTCT +
Preference number: 2 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSHSFPG*YTLGLS
Trigger: AGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATG...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAAGGGCAGCCGCATTGTGCTTGTaGTATTCAATGATCTCAGGA +
Preference number: 2 (lower is better)
Translates to: GHESPWLPLRNWCSSQRAAALCL*YSMISG
Trigger: TCCTGAGATCATTGAATATCACAAGCACAATGCGGC...TGCCCTTTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TCTTCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCAT +
Preference number: 2 (lower is better)
Translates to: SSSCLGNWGHHSSSKSFFRCQEN*VPMAHH
Trigger: ATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCT...GAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp AACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGAATGAGCAAAATGAGTaGTTCAAGTCACCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: NTPGPGLCKSQRAWKRRWNEQNE*FKSPAL
Trigger: CAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT...CCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CACTTCGTAATTGGTGTTCTTCTCAAAGGGCATCCTGCCTTCTGTGAATATTTCTCATCTCCTGAGGCCTaGGCACAGAGCCTGGTATAC +
Preference number: 2 (lower is better)
Translates to: HFVIGVLLKGHPAFCEYFSSPEA*AQSLVY
Trigger: GTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGA...GAAATATTCACAGAAGGCAGGATGCCCTTTGAGAAGAACACCAATTACGAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGCCATCACAACCACCCTaGCTTTCTGCTAGCATCAGC +
Preference number: 2 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLPSQPP*LSASIS
Trigger: GCTGATGCTAGCAGAAAGCCAGGGTGGTTGTGATGG...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGCATGGAAGAGACGCTaGGACATGACTCGTCCCCAT +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPAWKRR*DMTRPH
Trigger: ATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGC...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CTTCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCAAGAGCTGTACCAGCTTaGGGTGTGTCAGCTTCATCA +
Preference number: 2 (lower is better)
Translates to: LPLALETGATIHLPKVSSRAVPA*GVSASS
Trigger: TGATGAAGCTGACACACCCCAAGCTGGTACAGCTCT...TGAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GGGATATATCCTTCACTCCCATACTTATCTCTCGCTCTCCACCAATGGAGGTCAAGTATTTTCTTCCTCTaGGGGAATTGGTGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: GIYPSLPYLSLALHQWRSSIFFL*GNWWRR
Trigger: CCTCCTCCACCAATTCCCCCAGAGGAAGAAAATACT...TGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGAGTGAAGGATATATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR CAA 90 bp CCTTCTTTATCTTCCGTTCTGAGGAGCTGTTCTGCTTTGCTTCTGTaGGTATTTCTGCAGTACCACCCATACTTATCTCTCGCTCTCCAC +
Preference number: 2 (lower is better)
Translates to: PSLSSVLRSCSALLL*VFLQYHPYLSLALH
Trigger: GTGGAGAGCGAGAGATAAGTATGGGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGATAAAGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR-3UTR TCA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGCTTGTGATATTCAATaGTCTCAGGAATGGACCCGA +
Preference number: 2 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWACDIQ*SQEWTR
Trigger: TCGGGTCCATTCCTGAGATCATTGAATATCACAAGC...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGACCATTTCTTCCTCTTaGCTTGGAAACTGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLTISSS*LGNWGH
Trigger: GTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGT...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGCTTCTTTGGGGATGTTaGTGTTTCCTTTATGTGATA +
Preference number: 2 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMLLWGC*CFLYVI
Trigger: TATCACATAAAGGAAACAGCAACATCCCCAAAGAAG...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TCTTCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCAAATGGCCTTGTCTCTaGCGGAGGAAATTCAGAAGG +
Preference number: 2 (lower is better)
Translates to: SSSCLGNWGHHSSSKSFFKWPCL*RRKFRR
Trigger: CCTTCTGAATTTCCTCCGGCAGAGACAAGGCCATTT...GAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp GTCTCTCTTGCCAGCATCTCAGCATCACCTCATACAAATATTTGGAAGCCAGCTAAATGGCCTTGTCTCTaGCGGAGGAAATTCAGAAGG +
Preference number: 2 (lower is better)
Translates to: VSLASISASPHTNIWKPAKWPCL*RRKFRR
Trigger: CCTTCTGAATTTCCTCCGGCAGAGACAAGGCCATTT...AGCTGGCTTCCAAATATTTGTATGAGGTGATGCTGAGATGCTGGCAAGAGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp GTAATACTTCTTTGGGGATGTTGCTGTTTCCTTTATGTGATAATGCCTGAAACCCCTGGGCACAGAGCCTaGTATACATGGCTGGCACTC +
Preference number: 2 (lower is better)
Translates to: VILLWGCCCFLYVIMPETPGHRA*YTWLAL
Trigger: GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGG...GGTTTCAGGCATTATCACATAAAGGAAACAGCAACATCCCCAAAGAAGTATTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTCCATCACAACCACCCTaGCTTTCTGCTAGCATCAGC +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPPSQPP*LSASIS
Trigger: GCTGATGCTAGCAGAAAGCCAGGGTGGTTGTGATGG...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCACATTCAACTAGTTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCCATCACAACCACCCTaGCTTTCTGCTAGCATCAGC +
Preference number: 2 (lower is better)
Translates to: SHSTSSSIVRSKSSKEGLPSQPP*LSASIS
Trigger: GCTGATGCTAGCAGAAAGCCAGGGTGGTTGTGATGG...AAGGCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAACTAGTTGAATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGGACAGTGTACAAGCCTaGTTGACTGGAGTCTCTCAC +
Preference number: 2 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLDSVQA*LTGVSH
Trigger: GTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTC...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGATGGCACTCAAACCCTTaGAGAAATGAGCAAAATGAG +
Preference number: 2 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRWHSNP*RNEQNE
Trigger: CTCATTTTGCTCATTTCTTCAAGGGTTTGAGTGCCA...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCCATTCTTTTCCAGGATaGTATACTCTTGGCCTCTCT +
Preference number: 2 (lower is better)
Translates to: NEQNECFKSPALRDHLCSHSFPG*YTLGLS
Trigger: AGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATG...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCACAGCCGCATTGTGCTTGTaGTATTCAATGATCTCAGGA +
Preference number: 2 (lower is better)
Translates to: SSCLGNWGHHSSSKSFFTAALCL*YSMISG
Trigger: TCCTGAGATCATTGAATATCACAAGCACAATGCGGC...TGTGAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTAGGTGCCAAGAGAATTaGGTTCCGATGGCACACCAT +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPRCQEN*VPMAHH
Trigger: ATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCT...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp GGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAACTTCTTTGGGGATGTTaGTGTTTCCTTTATGTGATA +
Preference number: 2 (lower is better)
Translates to: GGGHESPWLPLRNWCSSQLLWGC*CFLYVI
Trigger: TATCACATAAAGGAAACAGCAACATCCCCAAAGAAG...TTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCTTCACATTCAACTAGTTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGG +
Preference number: 2 (lower is better)
Translates to: SSHSTSSSIVRSKSSKEGLALHQ*RSFFSR
Trigger: CCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAG...GCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAACTAGTTGAATGTGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCTTCACATTCAACTAGTTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCTTCTTCCTCTTGCCTTaGAAACTGGGGCCACCATTC +
Preference number: 2 (lower is better)
Translates to: SSHSTSSSIVRSKSSKEGFFLLP*KLGPPF
Trigger: GAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGAA...GCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAACTAGTTGAATGTGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTCCTTCACAGACATCTTaGCACATGCTTAGCAGCATG +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPPSQTS*HMLSSM
Trigger: CATGCTGCTAAGCATGTGTCAAGATGTCTGTGAAGG...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CTCCACCAATGGAGGTCATTCTTTTCCAGGATGATATACTCTTGGCCTCTCTCTAATGAGCAAAATGAGTaGTTCAAGTCACCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: LHQWRSFFSRMIYSWPLSNEQNE*FKSPAL
Trigger: CAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT...AGAGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp GTCTCTCTTGCCAGCATCTCAGCATCACCTCATACAAATATTTGGAAGCCAGCTTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATT +
Preference number: 2 (lower is better)
Translates to: VSLASISASPHTNIWKPASEELF*FASVGI
Trigger: AATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGA...AGCTGGCTTCCAAATATTTGTATGAGGTGATGCTGAGATGCTGGCAAGAGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCACACATCCAGAACGTACCTaGCCATTCCAAAATCAGATA +
Preference number: 2 (lower is better)
Translates to: SSCLGNWGHHSSSKSFFTHPERT*PFQNQI
Trigger: TATCTGATTTTGGAATGGCCAGGTACGTTCTGGATG...TGTGAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp TCACATTCAACTAGTTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTGCTTGTGATATTCAATaGTCTCAGGAATGGACCCGA +
Preference number: 2 (lower is better)
Translates to: SHSTSSSIVRSKSSKEGLACDIQ*SQEWTR
Trigger: TCGGGTCCATTCCTGAGATCATTGAATATCACAAGC...AAGGCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAACTAGTTGAATGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp TTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCGGAGCTGTTCTGCTTTaGTTCTGTTGGTATTTCTGC +
Preference number: 2 (lower is better)
Translates to: FGKRCFQNRGLLRIQVGSGAVLL*FCWYFC
Trigger: GCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCC...GGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp TCACATTCAACTAGTTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCTGCTTTGCTTCTGTTaGTATTTCTGCAGTACCACC +
Preference number: 2 (lower is better)
Translates to: SHSTSSSIVRSKSSKEGLLLCFC*YFCSTT
Trigger: GGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAG...AAGGCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAACTAGTTGAATGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR-3UTR TCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTTGGCACTCAAACCCTTaGAGAAATGAGCAAAATGAG +
Preference number: 2 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPWHSNP*RNEQNE
Trigger: CTCATTTTGCTCATTTCTTCAAGGGTTTGAGTGCCA...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR GCA 90 bp CACATGAAGGATTCATTGAAATTAACCTGGGCTGAAATGCCACTTGCAAACCAACTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 2 (lower is better)
Translates to: HMKDSLKLTWAEMPLANQLVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...TTGGTTTGCAAGTGGCATTTCAGCCCAGGTTAATTTCAATGAATCCTTCATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR-3UTR CCA 90 bp AAGAACAAGTTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGAGAGCCTGGTATACATaGCTGGCACTCAAACCCTTG +
Preference number: 2 (lower is better)
Translates to: KNKFGKRCFQNRGLLRIQRAWYT*LALKPL
Trigger: CAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCT...CTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAACTTGTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CCA 90 bp CACTTCGTAATTGGTGTTCTTCTCAAAGGGCATCCTGCCTTCTGTGAATATTTCCATCCAGAACGTACCTaGCCATTCCAAAATCAGATA +
Preference number: 2 (lower is better)
Translates to: HFVIGVLLKGHPAFCEYFHPERT*PFQNQI
Trigger: TATCTGATTTTGGAATGGCCAGGTACGTTCTGGATG...GAAATATTCACAGAAGGCAGGATGCCCTTTGAGAAGAACACCAATTACGAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR TCA 90 bp ACAGCTTGTATCTTATTTATATCACAGCCCTTTCAGGCCTTAGGCATAAGTATACATTCTTTTCCAGGATaGTATACTCTTGGCCTCTCT +
Preference number: 2 (lower is better)
Translates to: TACILFISQPFQALGISIHSFPG*YTLGLS
Trigger: AGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATG...TATACTTATGCCTAAGGCCTGAAAGGGCTGTGATATAAATAAGATACAAGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR CCA 72 bp TCTGTGCAGCCGGCAAAGCAGCCACTGAGCTCAGGCTaGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTTG +
Preference number: 3 (lower is better)
Translates to: SVQPAKQPLSSG*ISSRCAGAPVL
Trigger: CAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTGCACAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGC +
Preference number: 3 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALIWKPA*AGGGGG
Trigger: GCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAAT...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGC +
Preference number: 3 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMIWKPA*AGGGGG
Trigger: GCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAAT...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTTTTCTTCCTCTTGCCTaGGAAACTGGGGCCACCATT +
Preference number: 3 (lower is better)
Translates to: KAATELRLDQQQMRWGSRFLPLA*ETGATI
Trigger: AATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAA...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTCTTCTCCCCCAAACTTaGTGTAAAGGGAGACAGTGT +
Preference number: 3 (lower is better)
Translates to: KAATELRLDQQQMRWGSRLLPQT*CKGRQC
Trigger: ACACTGTCTCCCTTTACACAAAGTTTGGGGGAGAAG...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp TGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTCCTTCCCGGATAGCTTaGATGGCCACTTTGTACTGG +
Preference number: 3 (lower is better)
Translates to: WPVEAVATSHHGYHFVIGPSRIA*MATLYW
Trigger: CCAGTACAAAGTGGCCATCAAAGCTATCCGGGAAGG...ACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTACCTCATACAAATATTaGGAAGCCAGCTTTGGCCGG +
Preference number: 3 (lower is better)
Translates to: KAATELRLDQQQMRWGSRTSYKY*EASFGR
Trigger: CCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGT...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp GGGAATTGGTGGAGGAGGCCTTCTCTTCTTTATTTCTGGCGCGGGAGGCAGGGTCACCATTTCTTCCTCTaGCCTTGGAAACTGGGGCCA +
Preference number: 3 (lower is better)
Translates to: GNWWRRPSLLYFWRGRQGHHFFL*PWKLGP
Trigger: TGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTG...ACCCTGCCTCCCGCGCCAGAAATAAAGAAGAGAAGGCCTCCTCCACCAATTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138842.8
3UTR TCA 72 bp GTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATaGCTCGTCCCCATCACAACCACCCTGGCTTTCTGC +
Preference number: 3 (lower is better)
Translates to: VKAKGHGRDAGT*LVPITTTLAFC
Trigger: GCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp GCTTTGGCCGGTGGAGGCGGTGGCCACGAGTCACCATaGTTACCACTTCGTAATTGGTGTTCTTCTCAAAGG +
Preference number: 3 (lower is better)
Translates to: ALAGGGGGHESP*LPLRNWCSSQR
Trigger: CCTTTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp CAGCATCACCTCATACAAATATTTGGAAGCCAGCTTTaGCCGGTGGAGGCGGTGGCCACGAGTCACCATGGT +
Preference number: 3 (lower is better)
Translates to: QHHLIQIFGSQL*PVEAVATSHHG
Trigger: ACCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGTGATGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 72 bp CTTAGCAGCATGTCTCTGCTGAAATGGCCTTGTCTCTaGCGGAGGAAATTCAGAAGGCAGCCCCGTTCCATG +
Preference number: 3 (lower is better)
Translates to: LSSMSLLKWPCL*RRKFRRQPRSM
Trigger: CATGGAACGGGGCTGCCTTCTGAATTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp GGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTaGGACATGACTCGTCCCCATCACAACCACCCTGGC +
Preference number: 3 (lower is better)
Translates to: GLCKSQRAWKRR*DMTRPHHNHPG
Trigger: GCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp ACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATaGAAGAGACGCTGGGACATGACTCGTCCCCATCAC +
Preference number: 3 (lower is better)
Translates to: TPGPGLCKSQRA*KRRWDMTRPHH
Trigger: GTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACACACCATTTCTTCCTCTaGCCTTGGAAACTGGGGCCA +
Preference number: 3 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTHHFFL*PWKLGP
Trigger: TGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTG...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp CTCATACAAATATTTGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTTCTGCTGAAATGGCCTaGTCTCTGCCGGAGGAAATT +
Preference number: 3 (lower is better)
Translates to: LIQIFGSQLWPVEAVATSSAEMA*SLPEEI
Trigger: AATTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGA...ACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR TCA 72 bp CGCAGCCTGGTGACAAGCCCTGCCGCATTGTGCTTGTaGTATTCAATGATCTCAGGAATGGACCCGAAAGCA +
Preference number: 3 (lower is better)
Translates to: RSLVTSPAALCL*YSMISGMDPKA
Trigger: TGCTTTCGGGTCCATTCCTGAGATCATTGAATATCACAAGCACAATGCGGCAGGGCTTGTCACCAGGCTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTaGTATACATGGCTGGCACTCAAACCCTTGAAGAAA +
Preference number: 3 (lower is better)
Translates to: SHVHLLRPGHRA*YTWLALKPLKK
Trigger: TTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTTCTGCTTTGCTTCTGTaGGTATTTCTGCAGTACCAC +
Preference number: 3 (lower is better)
Translates to: EETLGHDSSPSQPPWLSASALLL*VFLQYH
Trigger: GTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGA...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp TCTCTGCCGGAGGAAATTCAGAAGGCAGCCCCGTTCCATGAACTCGGTAACGATCTTCTCCCCCAAACTTaGTGTAAAGGGAGACAGTGT +
Preference number: 3 (lower is better)
Translates to: SLPEEIQKAAPFHELGNDLLPQT*CKGRQC
Trigger: ACACTGTCTCCCTTTACACAAAGTTTGGGGGAGAAG...ATCGTTACCGAGTTCATGGAACGGGGCTGCCTTCTGAATTTCCTCCGGCAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 72 bp TCCCGTGTTGTAAGCAGAGCAGTCTATACTCCCAGGTaGCAAGAGAATTGCGTTCCGATGGCACACCATTTC +
Preference number: 3 (lower is better)
Translates to: SRVVSRAVYTPR*QENCVPMAHHF
Trigger: GAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCTGGGAGTATAGACTGCTCTGCTTACAACACGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp GGGAATTGGTGGAGGAGGCCTTCTCTTCTTTATTTCTaGCGCGGGAGGCAGGGTCTTTCTTATACTACTCTC +
Preference number: 3 (lower is better)
Translates to: GNWWRRPSLLYF*RGRQGLSYTTL
Trigger: GAGAGTAGTATAAGAAAGACCCTGCCTCCCGCGCCAGAAATAAAGAAGAGAAGGCCTCCTCCACCAATTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR CCA 72 bp TGTGATAGCTGGACCTTCATAGTCAGGAGGAGGAAGTaGCCAAATAAAGAGATGGACCTCGGCGGCTTTAGG +
Preference number: 3 (lower is better)
Translates to: CDSWTFIVRRRK*PNKEMDLGGFR
Trigger: CCTAAAGCCGCCGAGGTCCATCTCTTTATTTGGCCACTTCCTCCTCCTGACTATGAAGGTCCAGCTATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR-3UTR CAA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGCACCATTTCTTCCTCTaGCCTTGGAAACTGGGGCCA +
Preference number: 3 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWHHFFL*PWKLGP
Trigger: TGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTG...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp ACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTAGTGTACAAGCCTGGTaGACTGGAGTCTCTCACCAT +
Preference number: 3 (lower is better)
Translates to: TTLQAQVYVKAKGHGRDASVQAW*TGVSHH
Trigger: ATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACT...AGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp TTCATCTATCGTACGCAGCAAGTCTTCAAAGGAAGGCCTTCCCTCTGGTCTCTCAGTGTACAAGCCTGGTaGACTGGAGTCTCTCACCAT +
Preference number: 3 (lower is better)
Translates to: FIYRTQQVFKGRPSLWSLSVQAW*TGVSHH
Trigger: ATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACT...GAGAGACCAGAGGGAAGGCCTTCCTTTGAAGACTTGCTGCGTACGATAGATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AAGCCTCACCACTCCAAACAGTCCGCTCCCCAACTCTCTCATAAAGGTCAGCTCCCAGGTAATACTTCTTaGGGGATGTTGCTGTTTCCT +
Preference number: 3 (lower is better)
Translates to: KPHHSKQSAPQLSHKGQLPGNTS*GMLLFP
Trigger: AGGAAACAGCAACATCCCCAAAGAAGTATTACCTGG...GAGCTGACCTTTATGAGAGAGTTGGGGAGCGGACTGTTTGGAGTGGTGAGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCCCTTCCCGGATAGCTTaGATGGCCACTTTGTACTGG +
Preference number: 3 (lower is better)
Translates to: NEQNECFKSPALRDHLCSPSRIA*MATLYW
Trigger: CCAGTACAAAGTGGCCATCAAAGCTATCCGGGAAGG...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp CACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAAGGGCATCCTGCCTTCCACTTCACAGGGAACTaGGCGCCAGAAGAACTTGTG +
Preference number: 3 (lower is better)
Translates to: HHGYHFVIGVLLKGHPAFHFTGN*APEELV
Trigger: CACAAGTTCTTCTGGCGCCAAGTTCCCTGTGAAGTG...GAAGGCAGGATGCCCTTTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp TCTATACTCCCAGGTGCCAAGAGAATTGCGTTCCGATaGCACACCATTTCTTCCTCTTGCCTTGGAAACTGG +
Preference number: 3 (lower is better)
Translates to: SILPGAKRIAFR*HTISSSCLGNW
Trigger: CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCACCTGGGAGTATAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp TGCCGCATTGTGCTTGTGATATTCAATGATCTCAGGAATGGACCCGAAAGCATGCACCATTTCTTCCTCTaGCCTTGGAAACTGGGGCCA +
Preference number: 3 (lower is better)
Translates to: CRIVLVIFNDLRNGPESMHHFFL*PWKLGP
Trigger: TGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTG...CATGCTTTCGGGTCCATTCCTGAGATCATTGAATATCACAAGCACAATGCGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp GGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTG +
Preference number: 3 (lower is better)
Translates to: GGGHESPWLPLRNWCSSQRSCSA*LLLVFL
Trigger: CAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCT...TTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCAGTGTACAAGCCTGGTaGACTGGAGTCTCTCACCAT +
Preference number: 3 (lower is better)
Translates to: NEQNECFKSPALRDHLCSSVQAW*TGVSHH
Trigger: ATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACT...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp TCTTCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCTCTGCTGAAATGGCCTaGTCTCTGCCGGAGGAAATT +
Preference number: 3 (lower is better)
Translates to: SSSCLGNWGHHSSSKSFFSAEMA*SLPEEI
Trigger: AATTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGA...GAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGACCTCATACAAATATTaGGAAGCCAGCTTTGGCCGG +
Preference number: 3 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWTSYKY*EASFGR
Trigger: CCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGT...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp GGGATATATCCTTCACTCCCATACTTATCTCTCGCTCTCCACCAATGGAGGTCAAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTG +
Preference number: 3 (lower is better)
Translates to: GIYPSLPYLSLALHQWRSRSCSA*LLLVFL
Trigger: CAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCT...TGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGAGTGAAGGATATATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000149533.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGCCAGGTAATACTTCTTaGGGGATGTTGCTGTTTCCT +
Preference number: 3 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWPGNTS*GMLLFP
Trigger: AGGAAACAGCAACATCCCCAAAGAAGTATTACCTGG...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 72 bp ACCACCTTCTTTATCTTCCGTTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATTTCTGCAGTACCACCC +
Preference number: 3 (lower is better)
Translates to: TTFFIFRSEELF*FASVGISAVPP
Trigger: GGGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGATAAAGAAGGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR CCA 72 bp CAATGGAGGTCATTCTTTTCCAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGGTCATGTGCTTCCGTC +
Preference number: 3 (lower is better)
Translates to: QWRSFFSRMIYS*PLSNLRSCASV
Trigger: GACGGAAGCACATGACCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000149533.8
ENSMUST00000155342.8
3UTR CCA 72 bp CCCAAACTTTGTGTAAAGGGAGACAGTGTACAAGCCTaGTTGACTGGAGTCTCTCACCATAAAACCACCTTC +
Preference number: 3 (lower is better)
Translates to: PKLCVKGDSVQA*LTGVSHHKTTF
Trigger: GAAGGTGGTTTTATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTCTCCCTTTACACAAAGTTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp CCTCTCTCTAACCTGAGGTCATGTGCTTCCGTCGCTTaGAAGTCATACATCGCTACAACGATTTCTTCAGTA +
Preference number: 3 (lower is better)
Translates to: PLSNLRSCASVA*KSYIATTISSV
Trigger: TACTGAAGAAATCGTTGTAGCGATGTATGACTTCCAAGCGACGGAAGCACATGACCTCAGGTTAGAGAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR-3UTR CAA 90 bp TCCTCTTGCCTTGGAAACTGGGGCCACCATTCATCTTCCAAAAGTTTCTTCACAAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTG +
Preference number: 3 (lower is better)
Translates to: SSCLGNWGHHSSSKSFFTRSCSA*LLLVFL
Trigger: CAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCT...TGTGAAGAAACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR GCA 72 bp ACCACCTTCTTTATCTTCCGTTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATTTCTGCAGTACCACTC +
Preference number: 3 (lower is better)
Translates to: TTFFIFRSEELF*FASVGISAVPL
Trigger: GAGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGATAAAGAAGGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155342.8
3UTR CCA 72 bp CAGTACCACCCATACTTATCTCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGGATGATATACTCTTGG +
Preference number: 3 (lower is better)
Translates to: QYHPYLSLALHQ*RSFFSRMIYSW
Trigger: CCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGTGGTACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
3UTR CCA 72 bp CCTTCACTCCCATACTTATCTCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGGATGATATACTCTTGG +
Preference number: 3 (lower is better)
Translates to: PSLPYLSLALHQ*RSFFSRMIYSW
Trigger: CCAAGAGTATATCATCCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAGAGATAAGTATGGGAGTGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000149533.8
ENSMUST00000155342.8
3UTR CCA 72 bp TGGCTTTTGATTGCCAGACTTCAATACTGTGATAGCTaGACCTTCATAGTCAGGAGGAGGAAGTGGCCAAAT +
Preference number: 3 (lower is better)
Translates to: WLLIARLQYCDS*TFIVRRRKWPN
Trigger: ATTTGGCCACTTCCTCCTCCTGACTATGAAGGTCCAGCTATCACAGTATTGAAGTCTGGCAATCAAAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR-3UTR CAA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTCTTCTCCCCCAAACTTaGTGTAAAGGGAGACAGTGT +
Preference number: 3 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPLLPQT*CKGRQC
Trigger: ACACTGTCTCCCTTTACACAAAGTTTGGGGGAGAAG...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR-3UTR CAA 90 bp TGCCGCATTGTGCTTGTGATATTCAATGATCTCAGGAATGGACCCGAAAGCATGCTACTCTCAAAAAGATaGTACTTCTCACATCCGGGT +
Preference number: 3 (lower is better)
Translates to: CRIVLVIFNDLRNGPESMLLSKR*YFSHPG
Trigger: ACCCGGATGTGAGAAGTACAATCTTTTTGAGAGTAG...CATGCTTTCGGGTCCATTCCTGAGATCATTGAATATCACAAGCACAATGCGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138842.8
3UTR CCA 72 bp CCCGAAAGCATGCTTCTCTGCCAGGTAATACTTCTTTaGGGATGTTGCTGTTTCCTTTATGTGATAATGCCT +
Preference number: 3 (lower is better)
Translates to: PESMLLCQVILL*GCCCFLYVIMP
Trigger: AGGCATTATCACATAAAGGAAACAGCAACATCCCCAAAGAAGTATTACCTGGCAGAGAAGCATGCTTTCGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
3UTR CCA 72 bp CATCGCTACAACGATTTCTTCAGTATTTTCTTCCTCTaGGGGAATTGGTGGAGGAGGCCTTCTCTTCTTTAT +
Preference number: 3 (lower is better)
Translates to: HRYNDFFSIFFL*GNWWRRPSLLY
Trigger: ATAAAGAAGAGAAGGCCTCCTCCACCAATTCCCCCAGAGGAAGAAAATACTGAAGAAATCGTTGTAGCGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
3UTR CCA 72 bp ATTTTAATTGGTCATGTTAATTCGGTGAGCCGAAGGTaGCTTTTGATTGCCAGACTTCAATACTGTGATAGC +
Preference number: 3 (lower is better)
Translates to: ILIGHVNSVSRR*LLIARLQYCDS
Trigger: GCTATCACAGTATTGAAGTCTGGCAATCAAAAGCCACCTTCGGCTCACCGAATTAACATGACCAATTAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
3UTR TCA 72 bp ACTCATATTGATCTAAGTTGTTGGATTTCTTCCCTGTaGCGTAATTACTTGGGATATATCCTTCACTCCCAT +
Preference number: 3 (lower is better)
Translates to: THIDLSCWISSL*RNYLGYILHSH
Trigger: ATGGGAGTGAAGGATATATCCCAAGTAATTACGTCACAGGGAAGAAATCCAACAACTTAGATCAATATGAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000149533.8
ENSMUST00000155342.8
CDS-3UTR TCA 90 bp GCAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGTACCGCAGCCTGGTaGCAAGCCCTGCCGCATTGT +
Preference number: 4 (lower is better)
Translates to: AAGKAATELRLDQQQMRWGTAAW*QALPHC
Trigger: ACAATGCGGCAGGGCTTGTCACCAGGCTGCGGTACC...CCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTACTGGGCCCGCCACTTaGCAAGCCTCACCACTCCAA +
Preference number: 4 (lower is better)
Translates to: KAATELRLDQQQMRWGSRTGPAT*QASPLQ
Trigger: TTGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGT...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTGGTACCGCAGCCTGGTaGCAAGCCCTGCCGCATTGT +
Preference number: 4 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLGTAAW*QALPHC
Trigger: ACAATGCGGCAGGGCTTGTCACCAGGCTGCGGTACC...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTTGTAGCAGCATGTCTCTGCTaGAATGGCCTTGTCTCTGCC +
Preference number: 4 (lower is better)
Translates to: ATELRLDQQQMRWGSRVVAACLC*NGLVSA
Trigger: GGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGC...TACAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTATGTCTCTGCTGAAATaGCCTTGTCTCTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: PAKQPLSSGWISSRCAGAMSLLK*PCLCRR
Trigger: CCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACAT...AGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTAGGTACCGCAGCCTGGTaGCAAGCCCTGCCGCATTGT +
Preference number: 4 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLGTAAW*QALPHC
Trigger: ACAATGCGGCAGGGCTTGTCACCAGGCTGCGGTACC...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp GCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCTGGGCTTCTGCTGGGTaGATACACCATAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: AKQPLSSGWISSRCAGAPWASAG*IHHRAV
Trigger: TACAGCTCTATGGTGTATGCACCCAGCAGAAGCCCA...GGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: AKQPLSSGWISSRCAGAPLALHQ*RSFFSR
Trigger: CCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAG...GGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGACAGTGTACAAGCCTaGTTGACTGGAGTCTCTCAC +
Preference number: 4 (lower is better)
Translates to: AKQPLSSGWISSRCAGAPDSVQA*LTGVSH
Trigger: GTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTC...GGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GCAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCCACGAGTCACCATaGTTACCACTTCGTAATTGG +
Preference number: 4 (lower is better)
Translates to: AAGKAATELRLDQQQMRWGHESP*LPLRNW
Trigger: CCAATTACGAAGTGGTAACCATGGTGACTCGTGGCC...CCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp CCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCTTCACAGACATCTTaGCACATGCTTAGCAGCATG +
Preference number: 4 (lower is better)
Translates to: PAKQPLSSGWISSRCAGAPSQTS*HMLSSM
Trigger: CATGCTGCTAAGCATGTGTCAAGATGTCTGTGAAGG...AGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTAAATGGCCTTGTCTCTaGCGGAGGAAATTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: PAKQPLSSGWISSRCAGAKWPCL*RRKFRR
Trigger: CCTTCTGAATTTCCTCCGGCAGAGACAAGGCCATTT...AGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGCTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 4 (lower is better)
Translates to: QPAKQPLSSGWISSRCAGLVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...CCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR CCA 90 bp CCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCGCAGCCAGGTCTCTGTaGATGAAGCTGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: PKGMEETLGHDSSPSQPPAARSL*MKLFLS
Trigger: GGAGAGAAACAGCTTCATCCACAGAGACCTGGCTGC...GGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GCAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGTAATTAAACACTTCTaGGGGACACCACTTCACAGG +
Preference number: 4 (lower is better)
Translates to: AAGKAATELRLDQQQMRWVIKHF*GTPLHR
Trigger: CCTGTGAAGTGGTGTCCCCCAGAAGTGTTTAATTAC...CCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTGGAAGGCCTTCCCTCTaGTCTCTCTTGCCAGCATCT +
Preference number: 4 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAGRPSL*SLLPAS
Trigger: AGATGCTGGCAAGAGAGACCAGAGGGAAGGCCTTCC...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGGAAGGCCTTCCCTCTaGTCTCTCTTGCCAGCATCT +
Preference number: 4 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLEGRPSL*SLLPAS
Trigger: AGATGCTGGCAAGAGAGACCAGAGGGAAGGCCTTCC...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp CCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCGTGTACAAGCCTGGTTaGCTGGAGTCTCTCACCATA +
Preference number: 4 (lower is better)
Translates to: PKGMEETLGHDSSPSQPPVYKPG*LESLTI
Trigger: TATGGTGAGAGACTCCAGTCAACCAGGCTTGTACAC...GGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTCATAAAGGTCAGCTCTaGTGGGTTAATCTCCCACTT +
Preference number: 4 (lower is better)
Translates to: KAATELRLDQQQMRWGSRHKGQL*WVNLPL
Trigger: AAGTGGGAGATTAACCCATCAGAGCTGACCTTTATG...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTGAAAGCATGCTTCTCTaGCAGGTAATACTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: PAKQPLSSGWISSRCAGAESMLL*QVILLW
Trigger: CCAAAGAAGTATTACCTGGCAGAGAAGCATGCTTTC...AGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAATGTCTCTGCTGAAATaGCCTTGTCTCTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLEMSLLK*PCLCRR
Trigger: CCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACAT...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCAGCAGCCAGGTCTCTGTaGATGAAGCTGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAAARSL*MKLFLS
Trigger: GGAGAGAAACAGCTTCATCCACAGAGACCTGGCTGC...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
3UTR CAA 72 bp TCAGCATCACCTCATACAAATATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGCCACGAGTCACCATGG +
Preference number: 4 (lower is better)
Translates to: SASPHTNIWKPA*AGGGGGHESPW
Trigger: CCATGGTGACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGTGATGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
CDS-3UTR TCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTCATTCTTTTCCAGGATaGTATACTCTTGGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: KAATELRLDQQQMRWGSRHSFPG*YTLGLS
Trigger: AGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATG...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACGCAGCATGTCTCTGCTaGAATGGCCTTGTCTCTGCC +
Preference number: 4 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNAACLC*NGLVSA
Trigger: GGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGC...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTTGGGCTTCTGCTGGGTaGATACACCATAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLWASAG*IHHRAV
Trigger: TACAGCTCTATGGTGTATGCACCCAGCAGAAGCCCA...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACACCCTCTGGTCTCTCTTaGCAGCATCTCAGCATCACC +
Preference number: 4 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTPSGLS*QHLSIT
Trigger: GGTGATGCTGAGATGCTGGCAAGAGAGACCAGAGGG...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTTCGGTCCCTGCTTTGTaGACTAGGTGCAAAAATATA +
Preference number: 4 (lower is better)
Translates to: KAATELRLDQQQMRWGSRSVPAL*TRCKNI
Trigger: TATATTTTTGCACCTAGTCCACAAAGCAGGGACCGA...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR CCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLLALHQ*RSFFSR
Trigger: CCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAG...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTGGCCACGAGTCACCATaGTTACCACTTCGTAATTGG +
Preference number: 4 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAGHESP*LPLRNW
Trigger: CCAATTACGAAGTGGTAACCATGGTGACTCGTGGCC...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTTATTTTGACAGGGAATaGCACCATCATCGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KAATELRLDQQQMRWGSRYFDRE*HHHRSS
Trigger: TGAAGAACGATGATGGTGTCATTCCCTGTCAAAATA...ACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCGCTTGTGATATTCAATaGTCTCAGGAATGGACCCGA +
Preference number: 4 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPACDIQ*SQEWTR
Trigger: TCGGGTCCATTCCTGAGATCATTGAATATCACAAGC...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCCTTCACAGACATCTTaGCACATGCTTAGCAGCATG +
Preference number: 4 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAPSQTS*HMLSSM
Trigger: CATGCTGCTAAGCATGTGTCAAGATGTCTGTGAAGG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCCAAAATCAGATACTTTaGCAACTCCTGCTTCATTCA +
Preference number: 4 (lower is better)
Translates to: AKQPLSSGWISSRCAGAPQNQIL*QLLLHS
Trigger: TGAATGAAGCAGGAGTTGTCAAAGTATCTGATTTTG...GGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGAACTGGGCCCGCCACTTaGCAAGCCTCACCACTCCAA +
Preference number: 4 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRTGPAT*QASPLQ
Trigger: TTGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGT...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCCCCTCTGGTCTCTCTTaGCAGCATCTCAGCATCACC +
Preference number: 4 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSPSGLS*QHLSIT
Trigger: GGTGATGCTGAGATGCTGGCAAGAGAGACCAGAGGG...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAAGAGCTGTACCAGCTTaGGGTGTGTCAGCTTCATCA +
Preference number: 4 (lower is better)
Translates to: CSSPEAWAQSLVYMAGTQRAVPA*GVSASS
Trigger: TGATGAAGCTGACACACCCCAAGCTGGTACAGCTCT...TTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCGTAATTAAACACTTCTaGGGGACACCACTTCACAGG +
Preference number: 4 (lower is better)
Translates to: PKGMEETLGHDSSPSQPPVIKHF*GTPLHR
Trigger: CCTGTGAAGTGGTGTCCCCCAGAAGTGTTTAATTAC...GGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCCCTCATACAAATATTTaGAAGCCAGCTTTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPPHTNI*KPALAG
Trigger: ACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGG...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCCTGCTTTGCTTCTGTTaGTATTTCTGCAGTACCACC +
Preference number: 4 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPLLCFC*YFCSTT
Trigger: GGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAG...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073843.13
CDS-3UTR TCA 90 bp GCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTTGTAAGTGTATTAGCATCATaGACAACCTGGAATGGAAAT +
Preference number: 4 (lower is better)
Translates to: ATELRLDQQQMRWGSRVVSVLAS*TTWNGN
Trigger: ATTTCCATTCCAGGTTGTTCATGATGCTAATACACT...TACAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR TCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGCTTGTGATATTCAATaGTCTCAGGAATGGACCCGA +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLACDIQ*SQEWTR
Trigger: TCGGGTCCATTCCTGAGATCATTGAATATCACAAGC...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGCCGCATTGTGCTTGTaGTATTCAATGATCTCAGGA +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLAALCL*YSMISG
Trigger: TCCTGAGATCATTGAATATCACAAGCACAATGCGGC...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCAGCATCCTGCCTTCTGTaGATATTTCCCACATTAGCA +
Preference number: 4 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAASCLL*IFPTLA
Trigger: TGCTAATGTGGGAAATATTCACAGAAGGCAGGATGC...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCCTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 4 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALLVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR GCA 90 bp GCAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGTTCTGTTGGTATTTCTaGAGTACCACTCATATTGAT +
Preference number: 4 (lower is better)
Translates to: AAGKAATELRLDQQQMRWFCWYF*STTHID
Trigger: ATCAATATGAGTGGTACTGCAGAAATACCAACAGAA...CCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTAAGTATTTTCTTCCTCTaGGGGAATTGGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLSIFFL*GNWWRR
Trigger: CCTCCTCCACCAATTCCCCCAGAGGAAGAAAATACT...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR CCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGG +
Preference number: 4 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLERMIYS*PLSNLR
Trigger: CCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCT...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACAGAGCTGTACCAGCTTaGGGTGTGTCAGCTTCATCA +
Preference number: 4 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNRAVPA*GVSASS
Trigger: TGATGAAGCTGACACACCCCAAGCTGGTACAGCTCT...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCGTAATTAAACACTTCTaGGGGACACCACTTCACAGG +
Preference number: 4 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALVIKHF*GTPLHR
Trigger: CCTGTGAAGTGGTGTCCCCCAGAAGTGTTTAATTAC...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GCATCAGCTAGCATAGTCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGCCTCATACAAATATTTaGAAGCCAGCTTTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: ASASIVPCSSPEAWAQSLPHTNI*KPALAG
Trigger: ACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGG...CAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGACTATGCTAGCTGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACATTCTTTTCCAGGATaGTATACTCTTGGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: SHVHLLRPGHRAWYTWLAHSFPG*YTLGLS
Trigger: AGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATG...TGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCGTGTACAAGCCTGGTTaGCTGGAGTCTCTCACCATA +
Preference number: 4 (lower is better)
Translates to: RIAFRWHTISSSCLGNWGVYKPG*LESLTI
Trigger: TATGGTGAGAGACTCCAGTCAACCAGGCTTGTACAC...GCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTAGCATCCTGCCTTCTGTaGATATTTCCCACATTAGCA +
Preference number: 4 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLASCLL*IFPTLA
Trigger: TGCTAATGTGGGAAATATTCACAGAAGGCAGGATGC...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAGGAGCTGTTCTGCTTTaGTTCTGTTGGTATTTCTGC +
Preference number: 4 (lower is better)
Translates to: CSSPEAWAQSLVYMAGTQGAVLL*FCWYFC
Trigger: GCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCC...TTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAATCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATT +
Preference number: 4 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLESEELF*FASVGI
Trigger: AATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGA...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAAGCATGCTTCTCTaGCAGGTAATACTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLESMLL*QVILLW
Trigger: CCAAAGAAGTATTACCTGGCAGAGAAGCATGCTTTC...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp CCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAAGCATGCTTCTCTaGCAGGTAATACTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: PEAWAQSLVYMAGTQTLEESMLL*QVILLW
Trigger: CCAAAGAAGTATTACCTGGCAGAGAAGCATGCTTTC...TTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGACTGGGCCCGCCACTTaGCAAGCCTCACCACTCCAA +
Preference number: 4 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLTGPAT*QASPLQ
Trigger: TTGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGT...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACCCTCTGGTCTCTCTTaGCAGCATCTCAGCATCACC +
Preference number: 4 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRPSGLS*QHLSIT
Trigger: GGTGATGCTGAGATGCTGGCAAGAGAGACCAGAGGG...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGCTCGCTCTCCACCAATaGAGGTCATTCTTTTCCAGG +
Preference number: 4 (lower is better)
Translates to: NTPGPGLCKSQRAWKRRWLALHQ*RSFFSR
Trigger: CCTGGAAAAGAATGACCTCCATTGGTGGAGAGCGAG...CCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCGACAGTGTACAAGCCTaGTTGACTGGAGTCTCTCAC +
Preference number: 4 (lower is better)
Translates to: RIAFRWHTISSSCLGNWGDSVQA*LTGVSH
Trigger: GTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTC...GCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTTGGATTTCTTCCCTGTaGCGTAATTACTTGGGATAT +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLWISSL*RNYLGY
Trigger: ATATCCCAAGTAATTACGTCACAGGGAAGAAATCCA...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCCAGTACCACTCATATTaGTCTAAGTTGTTGGATTTC +
Preference number: 4 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPQYHSY*SKLLDF
Trigger: GAAATCCAACAACTTAGATCAATATGAGTGGTACTG...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTCAGTACCACTCATATTaGTCTAAGTTGTTGGATTTC +
Preference number: 4 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLQYHSY*SKLLDF
Trigger: GAAATCCAACAACTTAGATCAATATGAGTGGTACTG...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTCAGGTAATACTTCTTTaGGGATGTTGCTGTTTCCTT +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLQVILL*GCCCFL
Trigger: AAGGAAACAGCAACATCCCCAAAGAAGTATTACCTG...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAAGAGCTGTACCAGCTTaGGGTGTGTCAGCTTCATCA +
Preference number: 4 (lower is better)
Translates to: VPRELRSDGTPFLPLALERAVPA*GVSASS
Trigger: TGATGAAGCTGACACACCCCAAGCTGGTACAGCTCT...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGAATGTCTCTGCTGAAATaGCCTTGTCTCTGCCGGAGG +
Preference number: 4 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRMSLLK*PCLCRR
Trigger: CCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACAT...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCGCAGCCAGGTCTCTGTaGATGAAGCTGTTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: NEQNECFKSPALRDHLCSAARSL*MKLFLS
Trigger: GGAGAGAAACAGCTTCATCCACAGAGACCTGGCTGC...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTACATCCAGAACGTACCTaGCCATTCCAAAATCAGATA +
Preference number: 4 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLHPERT*PFQNQI
Trigger: TATCTGATTTTGGAATGGCCAGGTACGTTCTGGATG...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTTTACCACTTCGTAATTaGTGTTCTTCTCAAAGGGCA +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLLPLRN*CSSQRA
Trigger: TGCCCTTTGAGAAGAACACCAATTACGAAGTGGTAA...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTATATTTTGACAGGGAATaGCACCATCATCGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLYFDRE*HHHRSS
Trigger: TGAAGAACGATGATGGTGTCATTCCCTGTCAAAATA...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTAGTGTATTAGCATCATaGACAACCTGGAATGGAAAT +
Preference number: 4 (lower is better)
Translates to: EETLGHDSSPSQPPWLSASVLAS*TTWNGN
Trigger: ATTTCCATTCCAGGTTGTTCATGATGCTAATACACT...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR TCA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCATTCTTTTCCAGGATaGTATACTCTTGGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNHSFPG*YTLGLS
Trigger: AGAGAGGCCAAGAGTATATCATCCTGGAAAAGAATG...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCCATAAAGGTCAGCTCTaGTGGGTTAATCTCCCACTT +
Preference number: 4 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSHKGQL*WVNLPL
Trigger: AAGTGGGAGATTAACCCATCAGAGCTGACCTTTATG...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp AACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGCTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 4 (lower is better)
Translates to: NTPGPGLCKSQRAWKRRWLVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...CCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR GCA 90 bp CACATGCTTAGCAGCATGTCTCTGCTGAAATGGCCTTGTCTCTGCCGGAGGAAACTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 4 (lower is better)
Translates to: HMLSSMSLLKWPCLCRRKLVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...TTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGCTAAGCATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR GCA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTCTTCTTTGGGGATGTTaGTGTTTCCTTTATGTGATA +
Preference number: 4 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLLLWGC*CFLYVI
Trigger: TATCACATAAAGGAAACAGCAACATCCCCAAAGAAG...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCTTCTTTGGGGATGTTaGTGTTTCCTTTATGTGATA +
Preference number: 4 (lower is better)
Translates to: EETLGHDSSPSQPPWLSALLWGC*CFLYVI
Trigger: TATCACATAAAGGAAACAGCAACATCCCCAAAGAAG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAATGGGCTTCTGCTGGGTaGATACACCATAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: CQENCVPMAHHFFLLPWKWASAG*IHHRAV
Trigger: TACAGCTCTATGGTGTATGCACCCAGCAGAAGCCCA...TTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAAAATGGCCTTGTCTCTaGCGGAGGAAATTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: VPRELRSDGTPFLPLALEKWPCL*RRKFRR
Trigger: CCTTCTGAATTTCCTCCGGCAGAGACAAGGCCATTT...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATCGGTCCCTGCTTTGTaGACTAGGTGCAAAAATATA +
Preference number: 4 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTSVPAL*TRCKNI
Trigger: TATATTTTTGCACCTAGTCCACAAAGCAGGGACCGA...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR CCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCAGGATGATATACTCTTaGCCTCTCTCTAACCTGAGG +
Preference number: 4 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSRMIYS*PLSNLR
Trigger: CCTCAGGTTAGAGAGAGGCCAAGAGTATATCATCCT...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGGGAAGGCCTTCCCTCTaGTCTCTCTTGCCAGCATCT +
Preference number: 4 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLGRPSL*SLLPAS
Trigger: AGATGCTGGCAAGAGAGACCAGAGGGAAGGCCTTCC...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
3UTR CAA 72 bp TTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTaGGAAACTGGGGCCACCATTCATCTTCCAAAAGTT +
Preference number: 4 (lower is better)
Translates to: LRSDGTPFLPLA*ETGATIHLPKV
Trigger: AACTTTTGGAAGATGAATGGTGGCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000155342.8
CDS-3UTR TCA 90 bp TGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAAGTGTATTAGCATCATaGACAACCTGGAATGGAAAT +
Preference number: 4 (lower is better)
Translates to: CSSPEAWAQSLVYMAGTQSVLAS*TTWNGN
Trigger: ATTTCCATTCCAGGTTGTTCATGATGCTAATACACT...TTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR TCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCTTATGTGATAATGCCTaGAACCTGATGAGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSLCDNA*NLMSLL
Trigger: GAGAAGGCTCATCAGGTTTCAGGCATTATCACATAA...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAGCCGCATTGTGCTTGTaGTATTCAATGATCTCAGGA +
Preference number: 4 (lower is better)
Translates to: VPRELRSDGTPFLPLALEAALCL*YSMISG
Trigger: TCCTGAGATCATTGAATATCACAAGCACAATGCGGC...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGCAGCATGTCTCTGCTaGAATGGCCTTGTCTCTGCC +
Preference number: 4 (lower is better)
Translates to: LERDVSKTEDYYVSRWVPAACLC*NGLVSA
Trigger: GGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGC...AGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGCCTTCACAGACATCTTaGCACATGCTTAGCAGCATG +
Preference number: 4 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWPSQTS*HMLSSM
Trigger: CATGCTGCTAAGCATGTGTCAAGATGTCTGTGAAGG...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAACTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTA +
Preference number: 4 (lower is better)
Translates to: VPRELRSDGTPFLPLALELVTPI*PEFRMV
Trigger: TACCATCCTAAATTCTGGGCAGATGGGAGTTACCAG...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR GCA 90 bp AACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGTCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATT +
Preference number: 4 (lower is better)
Translates to: NTPGPGLCKSQRAWKRRWSEELF*FASVGI
Trigger: AATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGA...CCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGAAATGGCCTTGTCTCTaGCGGAGGAAATTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWKWPCL*RRKFRR
Trigger: CCTTCTGAATTTCCTCCGGCAGAGACAAGGCCATTT...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp TGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAATTCTGTTGGTATTTCTaGAGTACCACCCATACTTAT +
Preference number: 4 (lower is better)
Translates to: CSSPEAWAQSLVYMAGTQFCWYF*STTHTY
Trigger: ATAAGTATGGGTGGTACTGCAGAAATACCAACAGAA...TTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073843.13
CDS-3UTR CCA 90 bp AGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCCTGCTTTGCTTCTGTTaGTATTTCTGCAGTACCACT +
Preference number: 4 (lower is better)
Translates to: RIAFRWHTISSSCLGNWGLLCFC*YFCSTT
Trigger: AGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAG...GCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp CTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACACAGGTAATACTTCTTTaGGGATGTTGCTGTTTCCTT +
Preference number: 4 (lower is better)
Translates to: LQAQVYVKAKGHGRDAGTQVILL*GCCCFL
Trigger: AAGGAAACAGCAACATCCCCAAAGAAGTATTACCTG...TGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCCATCCAGAACGTACCTaGCCATTCCAAAATCAGATA +
Preference number: 4 (lower is better)
Translates to: RIAFRWHTISSSCLGNWGHPERT*PFQNQI
Trigger: TATCTGATTTTGGAATGGCCAGGTACGTTCTGGATG...GCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCTATTTTGACAGGGAATaGCACCATCATCGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RIAFRWHTISSSCLGNWGYFDRE*HHHRSS
Trigger: TGAAGAACGATGATGGTGTCATTCCCTGTCAAAATA...GCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp AACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGTGGATTTCTTCCCTGTaGCGTAATTACTTGGGATAT +
Preference number: 4 (lower is better)
Translates to: NTPGPGLCKSQRAWKRRWWISSL*RNYLGY
Trigger: ATATCCCAAGTAATTACGTCACAGGGAAGAAATCCA...CCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAATTATGTGATAATGCCTaGAACCTGATGAGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: VPRELRSDGTPFLPLALELCDNA*NLMSLL
Trigger: GAGAAGGCTCATCAGGTTTCAGGCATTATCACATAA...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCGCTTGTGATATTCAATaGTCTCAGGAATGGACCCGA +
Preference number: 4 (lower is better)
Translates to: NEQNECFKSPALRDHLCSACDIQ*SQEWTR
Trigger: TCGGGTCCATTCCTGAGATCATTGAATATCACAAGC...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR GCA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTATTCTGTTGGTATTTCTaGAGTACCACTCATATTGAT +
Preference number: 4 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLFCWYF*STTHID
Trigger: ATCAATATGAGTGGTACTGCAGAAATACCAACAGAA...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071944.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCCAGGTAATACTTCTTTaGGGATGTTGCTGTTTCCTT +
Preference number: 4 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSQVILL*GCCCFL
Trigger: AAGGAAACAGCAACATCCCCAAAGAAGTATTACCTG...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCAGTGTATTAGCATCATaGACAACCTGGAATGGAAAT +
Preference number: 4 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSSVLAS*TTWNGN
Trigger: ATTTCCATTCCAGGTTGTTCATGATGCTAATACACT...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR GCA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGATCTGAGGAGCTGTTCTaGTTTGCTTCTGTTGGTATT +
Preference number: 4 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRSEELF*FASVGI
Trigger: AATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGA...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAATCGGTCCCTGCTTTGTaGACTAGGTGCAAAAATATA +
Preference number: 4 (lower is better)
Translates to: CQENCVPMAHHFFLLPWKSVPAL*TRCKNI
Trigger: TATATTTTTGCACCTAGTCCACAAAGCAGGGACCGA...TTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
3UTR CAA 72 bp CGCACACTTACTTCCGTTCTGAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTGCAGTACCACTCATAT +
Preference number: 4 (lower is better)
Translates to: RTLTSVLRSCSA*LLLVFLQYHSY
Trigger: ATATGAGTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCTCAGAACGGAAGTAAGTGTGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
CDS-3UTR TCA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCTATTTTGACAGGGAATaGCACCATCATCGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: NEQNECFKSPALRDHLCSYFDRE*HHHRSS
Trigger: TGAAGAACGATGATGGTGTCATTCCCTGTCAAAATA...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGGCATCCTGCCTTCTGTaGATATTTCCCACATTAGCA +
Preference number: 4 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLASCLL*IFPTLA
Trigger: TGCTAATGTGGGAAATATTCACAGAAGGCAGGATGC...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TGCCGCATTGTGCTTGTGATATTCAATGATCTCAGGAATGGACCCGAAAGCATGTCGGTCCCTGCTTTGTaGACTAGGTGCAAAAATATA +
Preference number: 4 (lower is better)
Translates to: CRIVLVIFNDLRNGPESMSVPAL*TRCKNI
Trigger: TATATTTTTGCACCTAGTCCACAAAGCAGGGACCGA...CATGCTTTCGGGTCCATTCCTGAGATCATTGAATATCACAAGCACAATGCGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126481.8
CDS-3UTR CCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGCCTCATACAAATATTTaGAAGCCAGCTTTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLPHTNI*KPALAG
Trigger: ACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGG...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AAACTTTGTGTAAAGGGAGACAGTGTACAAGCCTGGTTGACTGGAGTCTCTCACTCGGTCCCTGCTTTGTaGACTGGAATGGAAATTTAT +
Preference number: 4 (lower is better)
Translates to: KLCVKGDSVQAWLTGVSHSVPAL*TGMEIY
Trigger: ATAAATTTCCATTCCAGTCCACAAAGCAGGGACCGA...GTGAGAGACTCCAGTCAACCAGGCTTGTACACTGTCTCCCTTTACACAAAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp TTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCCATAAAGGTCAGCTCTaGTGGGTTAATCTCCCACTT +
Preference number: 4 (lower is better)
Translates to: FGKRCFQNRGLLRIQVGSHKGQL*WVNLPL
Trigger: AAGTGGGAGATTAACCCATCAGAGCTGACCTTTATG...GGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACAAAATCAGATACTTTaGCAACTCCTGCTTCATTCA +
Preference number: 4 (lower is better)
Translates to: CQENCVPMAHHFFLLPWKQNQIL*QLLLHS
Trigger: TGAATGAAGCAGGAGTTGTCAAAGTATCTGATTTTG...TTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCCTTTGTGGACTGGAATaGAAATTTATTTTGACAGGG +
Preference number: 4 (lower is better)
Translates to: NEQNECFKSPALRDHLCSLCGLE*KFILTG
Trigger: CCCTGTCAAAATAAATTTCCATTCCAGTCCACAAAG...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp AAGAACAAGTTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGTACAAGCCTGGTTaGCTGGAGTCTCTCACCATA +
Preference number: 4 (lower is better)
Translates to: KNKFGKRCFQNRGLLRIQVYKPG*LESLTI
Trigger: TATGGTGAGAGACTCCAGTCAACCAGGCTTGTACAC...CTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAACTTGTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTTATGTGATAATGCCTaGAACCTGATGAGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: FGKRCFQNRGLLRIQVGSLCDNA*NLMSLL
Trigger: GAGAAGGCTCATCAGGTTTCAGGCATTATCACATAA...GGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR TCA 90 bp TTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTATTTTGACAGGGAATaGCACCATCATCGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: FGKRCFQNRGLLRIQVGSYFDRE*HHHRSS
Trigger: TGAAGAACGATGATGGTGTCATTCCCTGTCAAAATA...GGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR TCA 90 bp TGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGGTGGGTTCCTGCAAAATCAGATACTTTaGCAACTCCTGCTTCATTCA +
Preference number: 4 (lower is better)
Translates to: WKEMFPKQRITTYPGGFLQNQIL*QLLLHS
Trigger: TGAATGAAGCAGGAGTTGTCAAAGTATCTGATTTTG...CAGGAACCCACCTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp AAGAACAAGTTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGCATCCAGAACGTACCTaGCCATTCCAAAATCAGATA +
Preference number: 4 (lower is better)
Translates to: KNKFGKRCFQNRGLLRIQHPERT*PFQNQI
Trigger: TATCTGATTTTGGAATGGCCAGGTACGTTCTGGATG...CTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAACTTGTTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp TTATTTATATCACAGCCCTTTCAGGCCTTAGGCATAAGTATACGGAAAACACATTCGGTCCCTGCTTTGTaGACTGGAATGGAAATTTAT +
Preference number: 4 (lower is better)
Translates to: LFISQPFQALGISIRKTHSVPAL*TGMEIY
Trigger: ATAAATTTCCATTCCAGTCCACAAAGCAGGGACCGA...ATGTGTTTTCCGTATACTTATGCCTAAGGCCTGAAAGGGCTGTGATATAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
CDS-3UTR GCA 90 bp AAGAACAAGTTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGCTTCTTTGGGGATGTTaGTGTTTCCTTTATGTGATA +
Preference number: 4 (lower is better)
Translates to: KNKFGKRCFQNRGLLRIQLLWGC*CFLYVI
Trigger: TATCACATAAAGGAAACAGCAACATCCCCAAAGAAG...CTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAACTTGTTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CCA 90 bp ACAGCTTGTATCTTATTTATATCACAGCCCTTTCAGGCCTTAGGCATAAGTATACTTTGTGGACTGGAATaGAAATTTATTTTGACAGGG +
Preference number: 4 (lower is better)
Translates to: TACILFISQPFQALGISILCGLE*KFILTG
Trigger: CCCTGTCAAAATAAATTTCCATTCCAGTCCACAAAG...TATACTTATGCCTAAGGCCTGAAAGGGCTGTGATATAAATAAGATACAAGCTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
CDS-3UTR CAA 90 bp GCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTTGTATACTGGGCCCGCCACTaGCCAAGCCTCACCACTCCA +
Preference number: 5 (lower is better)
Translates to: ATELRLDQQQMRWGSRVVYWARH*PSLTTP
Trigger: TGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGTA...TACAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPIWKPA*AGGGGG
Trigger: GCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAAT...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAIWKPA*AGGGGG
Trigger: GCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAAT...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCATCGGTCCCTGCTTaGTGGACTAGGTGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: PAKQPLSSGWISSRCAGAPSVPA*WTRCKN
Trigger: ATTTTTGCACCTAGTCCACAAAGCAGGGACCGATGG...AGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR CAA 90 bp CAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGAGTGTACAAGCCTGGTaGACTGGAGTCTCTCACCAT +
Preference number: 5 (lower is better)
Translates to: QPAKQPLSSGWISSRCAGSVQAW*TGVSHH
Trigger: ATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACT...CCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGTCTGCTGAAATGGCCTaGTCTCTGCCGGAGGAAATT +
Preference number: 5 (lower is better)
Translates to: QPAKQPLSSGWISSRCAGSAEMA*SLPEEI
Trigger: AATTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGA...CCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTTGTACACTTCACAGGGAACTaGGCGCCAGAAGAACTTGTG +
Preference number: 5 (lower is better)
Translates to: ATELRLDQQQMRWGSRVVHFTGN*APEELV
Trigger: CACAAGTTCTTCTGGCGCCAAGTTCCCTGTGAAGTG...TACAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGCTTCTCCCCCAAACTTaGTGTAAAGGGAGACAGTGT +
Preference number: 5 (lower is better)
Translates to: QPAKQPLSSGWISSRCAGLLPQT*CKGRQC
Trigger: ACACTGTCTCCCTTTACACAAAGTTTGGGGGAGAAG...CCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACATTTGGAAGCCAGCTTaGGCCGGTGGAGGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNIWKPA*AGGGGG
Trigger: GCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAAT...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCCCAGGTAATACTTCTTaGGGGATGTTGCTGTTTCCT +
Preference number: 5 (lower is better)
Translates to: AKQPLSSGWISSRCAGAPPGNTS*GMLLFP
Trigger: AGGAAACAGCAACATCCCCAAAGAAGTATTACCTGG...GGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCTACTGGGCCCGCCACTaGCCAAGCCTCACCACTCCA +
Preference number: 5 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSYWARH*PSLTTP
Trigger: TGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGTA...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp AGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGGGCTACTGGGCCCGCCACTaGCCAAGCCTCACCACTCCA +
Preference number: 5 (lower is better)
Translates to: RIAFRWHTISSSCLGNWGYWARH*PSLTTP
Trigger: TGGAGTGGTGAGGCTTGGCAAGTGGCGGGCCCAGTA...GCCCCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCCCTTCCCGGATAGCTTaGATGGCCACTTTGTACTGG +
Preference number: 5 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPPSRIA*MATLYW
Trigger: CCAGTACAAAGTGGCCATCAAAGCTATCCGGGAAGG...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTCACTTCACAGGGAACTaGGCGCCAGAAGAACTTGTG +
Preference number: 5 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLHFTGN*APEELV
Trigger: CACAAGTTCTTCTGGCGCCAAGTTCCCTGTGAAGTG...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CAGCCGGCAAAGCAGCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGTCCACACACTTGATTTaGGAAATATCAATGACGCCC +
Preference number: 5 (lower is better)
Translates to: QPAKQPLSSGWISSRCAGSTHLI*EISMTP
Trigger: GGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGA...CCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGCTGCTTTGCCGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCCCATCGGTCCCTGCTTaGTGGACTAGGTGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPPSVPA*WTRCKN
Trigger: ATTTTTGCACCTAGTCCACAAAGCAGGGACCGATGG...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR CAA 90 bp CCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCAGTGTACAAGCCTGGTaGACTGGAGTCTCTCACCAT +
Preference number: 5 (lower is better)
Translates to: PKGMEETLGHDSSPSQPPSVQAW*TGVSHH
Trigger: ATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACT...GGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTCCTTCCCGGATAGCTTaGATGGCCACTTTGTACTGG +
Preference number: 5 (lower is better)
Translates to: EETLGHDSSPSQPPWLSAPSRIA*MATLYW
Trigger: CCAGTACAAAGTGGCCATCAAAGCTATCCGGGAAGG...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTAGTGTACAAGCCTGGTaGACTGGAGTCTCTCACCAT +
Preference number: 5 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLSVQAW*TGVSHH
Trigger: ATGGTGAGAGACTCCAGTCAACCAGGCTTGTACACT...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCACCTCATACAAATATTaGGAAGCCAGCTTTGGCCGG +
Preference number: 5 (lower is better)
Translates to: HLLRPGHRAWYTWLALKPTSYKY*EASFGR
Trigger: CCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGT...GGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTACCTCATACAAATATTaGGAAGCCAGCTTTGGCCGG +
Preference number: 5 (lower is better)
Translates to: EETLGHDSSPSQPPWLSATSYKY*EASFGR
Trigger: CCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGT...AGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GCCACTGAGCTCAGGCTGGATCAGCAGCAGATGCGCTGGGGCTCCCGTGTTGTAGAATGGAAATTTATTTaGACAGGGAATGACACCATC +
Preference number: 5 (lower is better)
Translates to: ATELRLDQQQMRWGSRVVEWKFI*TGNDTI
Trigger: GATGGTGTCATTCCCTGTCAAAATAAATTTCCATTC...TACAACACGGGAGCCCCAGCGCATCTGCTGCTGATCCAGCCTGAGCTCAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp GGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTCTACTCTCAAAAAGATaGTACTTCTCACATCCGGGT +
Preference number: 5 (lower is better)
Translates to: GMEETLGHDSSPSQPPWLLLSKR*YFSHPG
Trigger: ACCCGGATGTGAGAAGTACAATCTTTTTGAGAGTAG...AAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTG +
Preference number: 5 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALRSCSA*LLLVFL
Trigger: CAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCT...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACTCTGCTGAAATGGCCTaGTCTCTGCCGGAGGAAATT +
Preference number: 5 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNSAEMA*SLPEEI
Trigger: AATTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGA...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCTCCACACACTTGATTTaGGAAATATCAATGACGCCC +
Preference number: 5 (lower is better)
Translates to: HVHLLRPGHRAWYTWLALSTHLI*EISMTP
Trigger: GGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGA...GAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp CCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGCTTCTCCCCCAAACTTaGTGTAAAGGGAGACAGTGT +
Preference number: 5 (lower is better)
Translates to: PGPGLCKSQRAWKRRWDMLLPQT*CKGRQC
Trigger: ACACTGTCTCCCTTTACACAAAGTTTGGGGGAGAAG...CATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp AAGAGACGCTGGGACATGACTCGTCCCCATCACAACCACCCTGGCTTTCTGCTACCAGGTAATACTTCTTaGGGGATGTTGCTGTTTCCT +
Preference number: 5 (lower is better)
Translates to: KRRWDMTRPHHNHPGFLLPGNTS*GMLLFP
Trigger: AGGAAACAGCAACATCCCCAAAGAAGTATTACCTGG...TAGCAGAAAGCCAGGGTGGTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp AAAAGCCAAAGGGCATGGAAGAGACGCTGGGACATGACTCGTCCCCATCACAACAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTG +
Preference number: 5 (lower is better)
Translates to: KSQRAWKRRWDMTRPHHNRSCSA*LLLVFL
Trigger: CAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCT...GTTGTGATGGGGACGAGTCATGTCCCAGCGTCTCTTCCATGCCCTTTGGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp AAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACTGGCACTTCACAGGGAACTaGGCGCCAGAAGAACTTGTG +
Preference number: 5 (lower is better)
Translates to: KRIAFRWHTISSSCLGNWHFTGN*APEELV
Trigger: CACAAGTTCTTCTGGCGCCAAGTTCCCTGTGAAGTG...CCAGTTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GCATCAGCTAGCATAGTCCCATGTTCATCTCCTGAGGCCTGGGCACAGAGCCTGGAATGGAAATTTATTTaGACAGGGAATGACACCATC +
Preference number: 5 (lower is better)
Translates to: ASASIVPCSSPEAWAQSLEWKFI*TGNDTI
Trigger: GATGGTGTCATTCCCTGTCAAAATAAATTTCCATTC...CAGGCTCTGTGCCCAGGCCTCAGGAGATGAACATGGGACTATGCTAGCTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp TCTCCTGAGGCCTGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAATGGAAATTTATTTaGACAGGGAATGACACCATC +
Preference number: 5 (lower is better)
Translates to: SPEAWAQSLVYMAGTQTLEWKFI*TGNDTI
Trigger: GATGGTGTCATTCCCTGTCAAAATAAATTTCCATTC...AAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCAGGCCTCAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp TGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAAACCATCGGTCCCTGCTTaGTGGACTAGGTGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: CQENCVPMAHHFFLLPWKPSVPA*WTRCKN
Trigger: ATTTTTGCACCTAGTCCACAAAGCAGGGACCGATGG...TTTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR CAA 90 bp AATGAGCAAAATGAGTGCTTCAAGTCACCAGCTCTGAGAGACCATCTGTGCAGCCCATCGGTCCCTGCTTaGTGGACTAGGTGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: NEQNECFKSPALRDHLCSPSVPA*WTRCKN
Trigger: ATTTTTGCACCTAGTCCACAAAGCAGGGACCGATGG...GCTGCACAGATGGTCTCTCAGAGCTGGTGACTTGAAGCACTCATTTTGCTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
CDS-3UTR CAA 90 bp TGGGCACAGAGCCTGGTATACATGGCTGGCACTCAAACCCTTGAAGAAATGAGCAGGAGCTGTTCTGCTTaGCTTCTGTTGGTATTTCTG +
Preference number: 5 (lower is better)
Translates to: WAQSLVYMAGTQTLEEMSRSCSA*LLLVFL
Trigger: CAGAAATACCAACAGAAGCAAAGCAGAACAGCTCCT...GCTCATTTCTTCAAGGGTTTGAGTGCCAGCCATGTATACCAGGCTCTGTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp ACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTCTTCTCCCCCAAACTTaGTGTAAAGGGAGACAGTGT +
Preference number: 5 (lower is better)
Translates to: TTLQAQVYVKAKGHGRDALLPQT*CKGRQC
Trigger: ACACTGTCTCCCTTTACACAAAGTTTGGGGGAGAAG...AGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp ACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGACGCTACCTCATACAAATATTaGGAAGCCAGCTTTGGCCGG +
Preference number: 5 (lower is better)
Translates to: TTLQAQVYVKAKGHGRDATSYKY*EASFGR
Trigger: CCGGCCAAAGCTGGCTTCCAAATATTTGTATGAGGT...AGCGTCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp CTCATACAAATATTTGGAAGCCAGCTTTGGCCGGTGGAGGCGGTGGCCACGAGTATACTCTCAAAAAGATaGTACTTCTCACATCCGGGT +
Preference number: 5 (lower is better)
Translates to: LIQIFGSQLWPVEAVATSILSKR*YFSHPG
Trigger: ACCCGGATGTGAGAAGTACAATCTTTTTGAGAGTAT...ACTCGTGGCCACCGCCTCCACCGGCCAAAGCTGGCTTCCAAATATTTGTATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR CAA 90 bp CACATGCTTAGCAGCATGTCTCTGCTGAAATGGCCTTGTCTCTGCCGGAGGAAATCCACACACTTGATTTaGGAAATATCAATGACGCCC +
Preference number: 5 (lower is better)
Translates to: HMLSSMSLLKWPCLCRRKSTHLI*EISMTP
Trigger: GGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGA...TTTCCTCCGGCAGAGACAAGGCCATTTCAGCAGAGACATGCTGCTAAGCATGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAATCTGCTTTGCTTCTGTaGGTATTTCTGCAGTACCAC +
Preference number: 5 (lower is better)
Translates to: VPRELRSDGTPFLPLALESALLL*VFLQYH
Trigger: GTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGA...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAACCAGGTAATACTTCTTaGGGGATGTTGCTGTTTCCT +
Preference number: 5 (lower is better)
Translates to: VPRELRSDGTPFLPLALEPGNTS*GMLLFP
Trigger: AGGAAACAGCAACATCCCCAAAGAAGTATTACCTGG...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp TCTCTGCCGGAGGAAATTCAGAAGGCAGCCCCGTTCCATGAACTCGGTAACGATGAATGGAAATTTATTTaGACAGGGAATGACACCATC +
Preference number: 5 (lower is better)
Translates to: SLPEEIQKAAPFHELGNDEWKFI*TGNDTI
Trigger: GATGGTGTCATTCCCTGTCAAAATAAATTTCCATTC...ATCGTTACCGAGTTCATGGAACGGGGCTGCCTTCTGAATTTCCTCCGGCAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp ACCTTCATAGTCAGGAGGAGGAAGTGGCCAAATAAAGAGATGGACCTCGGCGGCGAATGGAAATTTATTTaGACAGGGAATGACACCATC +
Preference number: 5 (lower is better)
Translates to: TFIVRRRKWPNKEMDLGGEWKFI*TGNDTI
Trigger: GATGGTGTCATTCCCTGTCAAAATAAATTTCCATTC...GCCGCCGAGGTCCATCTCTTTATTTGGCCACTTCCTCCTCCTGACTATGAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149533.8
CDS-3UTR CAA 90 bp GTGCCAAGAGAATTGCGTTCCGATGGCACACCATTTCTTCCTCTTGCCTTGGAACTACTCTCAAAAAGATaGTACTTCTCACATCCGGGT +
Preference number: 5 (lower is better)
Translates to: VPRELRSDGTPFLPLALELLSKR*YFSHPG
Trigger: ACCCGGATGTGAGAAGTACAATCTTTTTGAGAGTAG...TTCCAAGGCAAGAGGAAGAAATGGTGTGCCATCGGAACGCAATTCTCTTGGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGATCTGCTTTGCTTCTGTaGGTATTTCTGCAGTACCAC +
Preference number: 5 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKRSALLL*VFLQYH
Trigger: GTGGTACTGCAGAAATACCAACAGAAGCAAAGCAGA...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS-3UTR CAA 90 bp GGCGGTGGCCACGAGTCACCATGGTTACCACTTCGTAATTGGTGTTCTTCTCAAATACTCTCAAAAAGATaGTACTTCTCACATCCGGGT +
Preference number: 5 (lower is better)
Translates to: GGGHESPWLPLRNWCSSQILSKR*YFSHPG
Trigger: ACCCGGATGTGAGAAGTACAATCTTTTTGAGAGTAT...TTGAGAAGAACACCAATTACGAAGTGGTAACCATGGTGACTCGTGGCCACCGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS-3UTR CAA 90 bp CAAACTTTGTGTAAAGGGAGACAGTGTACAAGCCTGGTTGACTGGAGTCTCTCATCCACACACTTGATTTaGGAAATATCAATGACGCCC +
Preference number: 5 (lower is better)
Translates to: QTLCKGRQCTSLVDWSLSSTHLI*EISMTP
Trigger: GGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGA...TGAGAGACTCCAGTCAACCAGGCTTGTACACTGTCTCCCTTTACACAAAGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp GTAGACAACACTCCAGGCCCAGGTTTATGTAAAAGCCAAAGGGCATGGAAGAGAGAATGGAAATTTATTTaGACAGGGAATGACACCATC +
Preference number: 5 (lower is better)
Translates to: VDNTPGPGLCKSQRAWKREWKFI*TGNDTI
Trigger: GATGGTGTCATTCCCTGTCAAAATAAATTTCCATTC...TCTCTTCCATGCCCTTTGGCTTTTACATAAACCTGGGCCTGGAGTGTTGTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
CDS-3UTR CAA 90 bp ATGTGCTTCCGTCGCTTGGAAGTCATACATCGCTACAACGATTTCTTCAGTATTTCCACACACTTGATTTaGGAAATATCAATGACGCCC +
Preference number: 5 (lower is better)
Translates to: MCFRRLEVIHRYNDFFSISTHLI*EISMTP
Trigger: GGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGA...AATACTGAAGAAATCGTTGTAGCGATGTATGACTTCCAAGCGACGGAAGCACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000138842.8
ENSMUST00000149533.8
CDS-3UTR CAA 90 bp AAGAACAAGTTTGGAAAGAGATGTTTCCAAAACAGAGGATTACTACGTATCCAGCTACTCTCAAAAAGATaGTACTTCTCACATCCGGGT +
Preference number: 5 (lower is better)
Translates to: KNKFGKRCFQNRGLLRIQLLSKR*YFSHPG
Trigger: ACCCGGATGTGAGAAGTACAATCTTTTTGAGAGTAG...CTGGATACGTAGTAATCCTCTGTTTTGGAAACATCTCTTTCCAAACTTGTTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
CDS CCA 72 bp GGGAATTGGTGGAGGAGGCCTTCTCTTCTTTATTTCTaGCGCGGGAGGCAGGGTCTTTCTTATACCTGTAAA +
Preference number: 6 (lower is better)
Translates to: GNWWRRPSLLYF*RGRQGLSYTCK
Trigger: TTTACAGGTATAAGAAAGACCCTGCCTCCCGCGCCAGAAATAAAGAAGAGAAGGCCTCCTCCACCAATTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126481.8
ENSMUST00000155342.8
CDS CAA 90 bp GGAATGACACCATCATCGTTCTTCACTATCTCCACACACTTGATTTaGGAAATATCAATGACGCCCTTTCTGTATTTCTTCTCCGCTCGA +
Preference number: 6 (lower is better)
Translates to: GMTPSSFFTISTHLI*EISMTPFLYFFSAR
Trigger: TCGAGCGGAGAAGAAATACAGAAAGGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGAGATAGTGAAGAACGATGATGGTGTCATTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000149533.8
CDS CAA 72 bp CCATCATCGTTCTTCACTATCTCCACACACTTGATTTaGGAAATATCAATGACGCCCTTTCTGTATTTCTTC +
Preference number: 6 (lower is better)
Translates to: PSSFFTISTHLI*EISMTPFLYFF
Trigger: GAAGAAATACAGAAAGGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGAGATAGTGAAGAACGATGATGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000149533.8
CDS CAA 72 bp ATGACACCATCATCGTTCTTCACTATCTCCACACACTaGATTTTGGAAATATCAATGACGCCCTTTCTGTAT +
Preference number: 6 (lower is better)
Translates to: MTPSSFFTISTH*ILEISMTPFLY
Trigger: ATACAGAAAGGGCGTCATTGATATTTCCAAAATCAAGTGTGTGGAGATAGTGAAGAACGATGATGGTGTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8
ENSMUST00000138842.8
ENSMUST00000149533.8
CDS GCA 72 bp TTTTTCTGTTTGTCTACAACACTGGTAACTCCCATCTaGCCAGAATTTAGGATGGTATTTAATCATGATATT +
Preference number: 6 (lower is better)
Translates to: FFCLSTTLVTPI*PEFRMVFNHDI
Trigger: AATATCATGATTAAATACCATCCTAAATTCTGGGCAGATGGGAGTTACCAGTGTTGTAGACAAACAGAAAAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071944.13
ENSMUST00000073843.13
ENSMUST00000113594.8
ENSMUST00000126481.8