RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TEAD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055320

Ensembl transcript IDs: ENSMUST00000059768.18, ENSMUST00000069256.12, ENSMUST00000084705.13, ENSMUST00000106638.10, ENSMUST00000164363.9, ENSMUST00000165036.8, ENSMUST00000167060.2, ENSMUST00000168981.8, ENSMUST00000170352.9, ENSMUST00000171197.8, ENSMUST00000239404.2, ENSMUST00000239442.2

Found 493 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCGCAGGGCTCCCCGCTGCCACACTGCTGTACAGGACAGTGGTGGTaGGGTTCCCCATTGGCAGGCAGACTCACAGCAGGCAGGGACCAC +
Preference number: 1 (lower is better)
Translates to: SQGSPLPHCCTGQWW*GSPLAGRLTAGRDH
Trigger: GTGGTCCCTGCCTGCTGTGAGTCTGCCTGCCAATGGGGAACCCCACCACCACTGTCCTGTACAGCAGTGTGGCAGCGGGGAGCCCTGCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp GGGGGAAGGCAGAGCCATGGTGTCTGCCCACTGGCCGGGATTCGGTaGTTGCGCATAAGTTCCTTCCCAGGGATGCAGAGCCGGGTGATG +
Preference number: 1 (lower is better)
Translates to: GGRQSHGVCPLAGIR*LRISSFPGMQSRVM
Trigger: CATCACCCGGCTCTGCATCCCTGGGAAGGAACTTATGCGCAAGCACCGAATCCCGGCCAGTGGGCAGACACCATGGCTCTGCCTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp CGCTGCCACACTGCTGTACAGGACAGTGGTGGTGGGGTTCCCCATTaGCAGGCAGACTCACAGCAGGCAGGGACCACACGTTGCTCGGTG +
Preference number: 1 (lower is better)
Translates to: RCHTAVQDSGGGVPH*QADSQQAGTTRCSV
Trigger: CACCGAGCAACGTGTGGTCCCTGCCTGCTGTGAGTCTGCCTGCCAATGGGGAACCCCACCACCACTGTCCTGTACAGCAGTGTGGCAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp GGAAGAAGAGGACAGTGGGGCAGCCGACACACCACCCTGACTCTGTaGCATCTTTGCCAGCCCACTGCCAACCACTATCCTCTAGCTGGT +
Preference number: 1 (lower is better)
Translates to: GRRGQWGSRHTTLTL*HLCQPTANHYPLAG
Trigger: ACCAGCTAGAGGATAGTGGTTGGCAGTGGGCTGGCAAAGATGTCACAGAGTCAGGGTGGTGTGTCGGCTGCCCCACTGTCCTCTTCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp CCAGGCGAGGCCAAAGATGGAAGAGAAGCCCTCACCCTTGTCCTGTaGCTAAATAGCTGGGAGCCTGGACCAGACACCTCTCATCCCTTC +
Preference number: 1 (lower is better)
Translates to: PGEAKDGREALTLVL*LNSWEPGPDTSHPF
Trigger: GAAGGGATGAGAGGTGTCTGGTCCAGGCTCCCAGCTATTTAGTCACAGGACAAGGGTGAGGGCTTCTCTTCCATCTTTGGCCTCGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp CAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTaGGGAGCAGAGACACCAAGCCTGATGAGCCTTCTGCTTGCTCGG +
Preference number: 1 (lower is better)
Translates to: QSIHRLARKLVTVTF*GAETPSLMSLLLAR
Trigger: CCGAGCAAGCAGAAGGCTCATCAGGCTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp TTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATaGGTATATGGGCAGCACAAATTGGCCACGGTGGGTGTGCTGGCT +
Preference number: 1 (lower is better)
Translates to: FLAGLTMFQWMSPHL*VYGQHKLATVGVLA
Trigger: AGCCAGCACACCCACCGTGGCCAATTTGTGCTGCCCATATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp GCTTCTGATACGGGGCCAATTAGCAAGTGGGCACCCAGAACAGGCTaGGAAAAGGCTGGCGGCTACAAGGTAGTACTAAGGCACGGCTTT +
Preference number: 1 (lower is better)
Translates to: ASDTGPISKWAPRTG*EKAGGYKVVLRHGF
Trigger: AAAGCCGTGCCTTAGTACTACCTTGTAGCCGCCAGCCTTTTCTCAGCCTGTTCTGGGTGCCCACTTGCTAATTGGCCCCGTATCAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp GAGAAGAGACAAAATGTCCGTAGTAAGAACCGACAAGGGCCAGGCTaGGCAAGGCTGGGTATGACAGGTCTAGTGGGACCTGACCCCATG +
Preference number: 1 (lower is better)
Translates to: EKRQNVRSKNRQGPG*ARLGMTGLVGPDPM
Trigger: CATGGGGTCAGGTCCCACTAGACCTGTCATACCCAGCCTTGCTCAGCCTGGCCCTTGTCGGTTCTTACTACGGACATTTTGTCTCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp ATTGGCAGGCAGACTCACAGCAGGCAGGGACCACACGTTGCTCGGTaGTCTCATGAATACAAGCCTGCGGTTGGTTATTCATCCCGGTTA +
Preference number: 1 (lower is better)
Translates to: IGRQTHSRQGPHVAR*SHEYKPAVGYSSRL
Trigger: TAACCGGGATGAATAACCAACCGCAGGCTTGTATTCATGAGAGCACCGAGCAACGTGTGGTCCCTGCCTGCTGTGAGTCTGCCTGCCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp GCGCAAGAACACAGAGCTAGAGCCACAGATGCTTCCTATGCACGCTaGGTTACCAGCAACAATCTATCCACAGGCTGGCCAGGAAGCTTG +
Preference number: 1 (lower is better)
Translates to: AQEHRARATDASYAR*VTSNNLSTGWPGSL
Trigger: CAAGCTTCCTGGCCAGCCTGTGGATAGATTGTTGCTGGTAACCCAGCGTGCATAGGAAGCATCTGTGGCTCTAGCTCTGTGTTCTTGCGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp TTTAGGAAGCTGAGAAGAGGGAAGAAGGAGCCAGGGATTAGAGACTaGGATGAGAGGTTAGAACATGACCTCCCGCCCCAAACCCAGGCT +
Preference number: 1 (lower is better)
Translates to: FRKLRRGKKEPGIRD*DERLEHDLPPQTQA
Trigger: AGCCTGGGTTTGGGGCGGGAGGTCATGTTCTAACCTCTCATCCCAGTCTCTAATCCCTGGCTCCTTCTTCCCTCTTCTCAGCTTCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp TCCTTTGAGGGCTGGCTTAGAAACAGGGAACCTAGGCTGTTCTCCTaGGGAGAACCAGTGCCCCATTGGCTTTACATAAGGGAGGCACAT +
Preference number: 1 (lower is better)
Translates to: SFEGWLRNREPRLFS*GEPVPHWLYIREAH
Trigger: ATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGGTTCTCCTCAGGAGAACAGCCTAGGTTCCCTGTTTCTAAGCCAGCCCTCAAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp AGATCTGCTTCGTCCCTAAAGATGGAAGAGATAGGACAGACAGCATaGAGCATGAGGCGGACAGCAGAAACAGTGTCGAGGAGACAGACC +
Preference number: 1 (lower is better)
Translates to: RSASSLKMEEIGQTA*SMRRTAETVSRRQT
Trigger: GGTCTGTCTCCTCGACACTGTTTCTGCTGTCCGCCTCATGCTCCATGCTGTCTGTCCTATCTCTTCCATCTTTAGGGACGAAGCAGATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp GCAGGAGAGGCCTCTAACAGAGGAAAGGATGCTGCTGAAGAATCCTaGCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGG +
Preference number: 1 (lower is better)
Translates to: AGEASNRGKDAAEES*HFLLLDLEKLRDWG
Trigger: CCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTCTTCAGCAGCATCCTTTCCTCTGTTAGAGGCCTCTCCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp GCTGAGCAAGCCATGAGGAGAAAGCCAGTAAGTAGCACTCCTTCATaGTCTCTGTATCAACTTGTAGTCTCAGGTTCCTGCCCTGACTGC +
Preference number: 1 (lower is better)
Translates to: AEQAMRRKPVSSTPS*SLYQLVVSGSCPDC
Trigger: GCAGTCAGGGCAGGAACCTGAGACTACAAGTTGATACAGAGACCATGAAGGAGTGCTACTTACTGGCTTTCTCCTCATGGCTTGCTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp AGTTGGCTGAGGGCTAGAATGTCCTTGAAAATGCCGAGTTGCAAATaGTGTGCTCTTCGCAAGTCCCTCACAGCACATTCGGACATCCAG +
Preference number: 1 (lower is better)
Translates to: SWLRARMSLKMPSCK*CALRKSLTAHSDIQ
Trigger: CTGGATGTCCGAATGTGCTGTGAGGGACTTGCGAAGAGCACACCATTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCTCAGCCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp TCTTGCTTCCCCAGTGAAAAAGCACTTAGGGAAGTAACCCGAGGCTaGCCACATCAGACCAACTCTGCAGGGCAATGCTTTGGAATATTC +
Preference number: 1 (lower is better)
Translates to: SCFPSEKALREVTRG*PHQTNSAGQCFGIF
Trigger: GAATATTCCAAAGCATTGCCCTGCAGAGTTGGTCTGATGTGGCCAGCCTCGGGTTACTTCCCTAAGTGCTTTTTCACTGGGGAAGCAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp GCTCTACTCCTGAGTGACAGACCCCTCCCCCATCCCATTCTGAGATaGCAGATAGCCACAGGAGATCATTTGTACCCATTCATTCATATC +
Preference number: 1 (lower is better)
Translates to: ALLLSDRPLPHPILR*QIATGDHLYPFIHI
Trigger: GATATGAATGAATGGGTACAAATGATCTCCTGTGGCTATCTGTCATCTCAGAATGGGATGGGGGAGGGGTCTGTCACTCAGGAGTAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp TACTTTCCTCTTATCTTCCCTGGGAAGTGGAGGGTTAACCTTTCTTaGTTCCCCAGTGAAAAAGCACTTAGGGAAGTAACCCGAGGCTGG +
Preference number: 1 (lower is better)
Translates to: YFPLIFPGKWRVNLS*FPSEKALREVTRGW
Trigger: CCAGCCTCGGGTTACTTCCCTAAGTGCTTTTTCACTGGGGAAGCAAGAAAGGTTAACCCTCCACTTCCCAGGGAAGATAAGAGGAAAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp TTAAAGAGTTGGCTGAGGGCTAGAATGTCCTTGAAAATGCCGAGTTaGAAATGGTGTGCTCTTCGCAAGTCCCTCACAGCACATTCGGAC +
Preference number: 1 (lower is better)
Translates to: LKSWLRARMSLKMPS*KWCALRKSLTAHSD
Trigger: GTCCGAATGTGCTGTGAGGGACTTGCGAAGAGCACACCATTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCTCAGCCAACTCTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp GAACCAGTGCCCCATTGGCTTTACATAAGGGAGGCACATTGCAAATaGAAACATCTTGCACATTCTTCTCTGGTCTTCCCAGGGATGAGG +
Preference number: 1 (lower is better)
Translates to: EPVPHWLYIREAHCK*KHLAHSSLVFPGMR
Trigger: CCTCATCCCTGGGAAGACCAGAGAAGAATGTGCAAGATGTTTCCATTTGCAATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp CTTTTTAAACCCTGGGAAAGAGTAGGCTGTAAGTCAAATCAGAAATaGTCTTTAAAGAGGAGTCAGATGGCTACAGGGAGGCTGCTGGCC +
Preference number: 1 (lower is better)
Translates to: LFKPWERVGCKSNQK*SLKRSQMATGRLLA
Trigger: GGCCAGCAGCCTCCCTGTAGCCATCTGACTCCTCTTTAAAGAGCATTTCTGATTTGACTTACAGCCTACTCTTTCCCAGGGTTTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 90 bp TCTTTTCGTTTGAGTATGAGGCACCTTCTGGAACAGATCCAGATCTaGTTCGTCCCTAAAGATGGAAGAGATAGGACAGACAGCATGGAG +
Preference number: 1 (lower is better)
Translates to: SFRLSMRHLLEQIQI*FVPKDGRDRTDSME
Trigger: CTCCATGCTGTCTGTCCTATCTCTTCCATCTTTAGGGACGAAGCAGATCTGGATCTGTTCCAGAAGGTGCCTCATACTCAAACGAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 90 bp CACAAGCCCATCCTATACACTTTACACGAGACAACAGAGAAGCCATaGAGTCGCTTAGAATCCGAAGGAACACACGTGGCAAAAACCAAT +
Preference number: 1 (lower is better)
Translates to: HKPILYTLHETTEKP*SRLESEGTHVAKTN
Trigger: ATTGGTTTTTGCCACGTGTGTTCCTTCGGATTCTAAGCGACTTCATGGCTTCTCTGTTGTCTCGTGTAAAGTGTATAGGATGGGCTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp GGTAGCTGGACTCTGGGCATCCCAGGACATGTTCTGAAGAAGTTTTaGGTGGATTTTTATGTCTCTTTCATTGGAAAGATGGCCTTTACA +
Preference number: 1 (lower is better)
Translates to: GSWTLGIPGHVLKKF*VDFYVSFIGKMAFT
Trigger: TGTAAAGGCCATCTTTCCAATGAAAGAGACATAAAAATCCACCCAAAACTTCTTCAGAACATGTCCTGGGATGCCCAGAGTCCAGCTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 90 bp TGGCACTTTCTAAGCTGGAATCTCGAGCCAAAGGCACTTTCAAGCTaGAGTGCAGAAGATTCACAAATAGCTAAGTATTTGGTCATGGAT +
Preference number: 1 (lower is better)
Translates to: WHFLSWNLEPKALSS*SAEDSQIAKYLVMD
Trigger: ATCCATGACCAAATACTTAGCTATTTGTGAATCTTCTGCACTCCAGCTTGAAAGTGCCTTTGGCTCGAGATTCCAGCTTAGAAAGTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGGGGAAGGCAGAGCCATaGTGTCTGCCCACTGGCCGG +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGGKAEP*CLPTGR
Trigger: CCGGCCAGTGGGCAGACACCATGGCTCTGCCTTCCC...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCGGTCAGGGTGGGACCTaGGGGGCCAGGGTAGCACCC +
Preference number: 2 (lower is better)
Translates to: TIYPQAGQEACDSDILGSGQGGT*GARVAP
Trigger: GGGTGCTACCCTGGCCCCCCAGGTCCCACCCTGACC...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGGGAAGGCAGAGCCATaGTGTCTGCCCACTGGCCGG +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSGKAEP*CLPTGR
Trigger: CCGGCCAGTGGGCAGACACCATGGCTCTGCCTTCCC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTGGTCAGGGTGGGACCTaGGGGGCCAGGGTAGCACCC +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFGQGGT*GARVAP
Trigger: GGGTGCTACCCTGGCCCCCCAGGTCCCACCCTGACC...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTAGCTCTACTCCTGAGTaGCAGACCCCTCCCCCATCC +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSSSTPE*QTPPPS
Trigger: GGATGGGGGAGGGGTCTGTCACTCAGGAGTAGAGCT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTACAGGACAGTGGTGGTaGGGTTCCCCATTGGCAGGC +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSTGQWW*GSPLAG
Trigger: GCCTGCCAATGGGGAACCCCACCACCACTGTCCTGT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGCTGCAGGAAAGAGATaGTGGCTGTGCAGGAGAGGC +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSAAGKR*WLCRRG
Trigger: GCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAAGCTCTACTCCTGAGTaGCAGACCCCTCCCCCATCC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARSSTPE*QTPPPS
Trigger: GGATGGGGGAGGGGTCTGTCACTCAGGAGTAGAGCT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTAGACAGCATGGAGCATaGGGCGGACAGCAGAAACAG +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSRQHGA*GGQQKQ
Trigger: CTGTTTCTGCTGTCCGCCTCATGCTCCATGCTGTCT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCTAGGGGATCCGAACTaGCTCTGTCCATGCATTCTC +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGLGDPN*LCPCIL
Trigger: GAGAATGCATGGACAGAGTCAGTTCGGATCCCCTAG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTACTGGTCCAGAATGTTaGTGGCCTCCAGGTAGCTGG +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSTGPEC*WPPGSW
Trigger: CCAGCTACCTGGAGGCCAGCAACATTCTGGACCAGT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGGAAGAAGAGGACAGTaGGGCAGCCGACACACCACC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARGRRGQ*GSRHTT
Trigger: GGTGGTGTGTCGGCTGCCCCACTGTCCTCTTCTTCC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGGGAAGAAGAGGACAGTaGGGCAGCCGACACACCACC +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEGRRGQ*GSRHTT
Trigger: GGTGGTGTGTCGGCTGCCCCACTGTCCTCTTCTTCC...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 90 bp GGTTCCCCATTGGCAGGCAGACTCACAGCAGGCAGGGACCACACGTaGCTCGGTGCTCTCATGAATACAAGCCTGCGGTTGGTTATTCAT +
Preference number: 2 (lower is better)
Translates to: GSPLAGRLTAGRDHT*LGALMNTSLRLVIH
Trigger: ATGAATAACCAACCGCAGGCTTGTATTCATGAGAGCACCGAGCAACGTGTGGTCCCTGCCTGCTGTGAGTCTGCCTGCCAATGGGGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTAGCTCTACTCCTGAGTaGCAGACCCCTCCCCCATCC +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFSSTPE*QTPPPS
Trigger: GGATGGGGGAGGGGTCTGTCACTCAGGAGTAGAGCT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCTCAGGTTCCTGCCCTaGCTGCCTTCAGTGATGGGC +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFLRFLP*LPSVMG
Trigger: GCCCATCACTGAAGGCAGTCAGGGCAGGAACCTGAG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGGTTCCTGGCAGGCTTaGCCATGTTCCAATGGATGT +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSGSWQA*PCSNGC
Trigger: ACATCCATTGGAACATGGTCAAGCCTGCCAGGAACC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCCAGCCACAGGACTCTaGATCCTTTGCAACTCAACA +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGPATGL*ILCNST
Trigger: TGTTGAGTTGCAAAGGATGCAGAGTCCTGTGGCTGG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCACAGATGCTTCCTATaGACGCTGGGTTACCAGCAA +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGHRCFL*TLGYQQ
Trigger: TTGCTGGTAACCCAGCGTGCATAGGAAGCATCTGTG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGGTACGGCCAATTAACTaGTCCAGAATGTTGCTGGCC +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGVRPIN*SRMLLA
Trigger: GGCCAGCAACATTCTGGACCAGTTAATTGGCCGTAC...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGGAGACAGACCCTATCTaGAAAAGGATGAGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGETDPI*KRMRRR
Trigger: CCTCCTCCTCATCCTTTTCCAGATAGGGTCTGTCTC...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCCAAGGGTTTTCTTTTaGCTGGTGTGTGGACAGGAC +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGPRVFF*LVCGQD
Trigger: GTCCTGTCCACACACCAGCCAAAAGAAAACCCTTGG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTGCCGACACACCACCCTaGCTCTGTGACATCTTTGCC +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFADTPP*LCDIFA
Trigger: GGCAAAGATGTCACAGAGTCAGGGTGGTGTGTCGGC...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATACTCAGGTTCCTGCCCTaGCTGCCTTCAGTGATGGGC +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSILRFLP*LPSVMG
Trigger: GCCCATCACTGAAGGCAGTCAGGGCAGGAACCTGAG...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGCCAGCCACAGGACTCTaGATCCTTTGCAACTCAACA +
Preference number: 2 (lower is better)
Translates to: QAGQEACDSDILGSRDTKPATGL*ILCNST
Trigger: TGTTGAGTTGCAAAGGATGCAGAGTCCTGTGGCTGG...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGAAACAAAAGGCGCTTaGTTCAGCCTCGCCATCATC +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSETKGA*FSLAII
Trigger: GATGATGGCGAGGCTGAAGCAAGCGCCTTTTGTTTC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAAGGCTGAGGGGCTCCTaGGAGTGGATGGGTCTAGGG +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETRLRGS*EWMGLG
Trigger: CCCTAGACCCATCCACTCTCAGGAGCCCCTCAGCCT...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATCTTTGCCAGCCCACTaGCAACCACTATCCTCTAGC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARSLPAH*QPLSSS
Trigger: GCTAGAGGATAGTGGTTGGCAGTGGGCTGGCAAAGA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTACTGGTCCAGAATGTTaGTGGCCTCCAGGTAGCTGG +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFTGPEC*WPPGSW
Trigger: CCAGCTACCTGGAGGCCAGCAACATTCTGGACCAGT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGACACCTATGAGTATATaGGCAGCACAAATTGGCCAC +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGTPMSI*AAQIGH
Trigger: GTGGCCAATTTGTGCTGCCCATATACTCATAGGTGT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGATAAGCAGTCAGAGCTaGTGCTGGGGCAAAGAGGTG +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRISSQS*CWGKEV
Trigger: CACCTCTTTGCCCCAGCATCAGCTCTGACTGCTTAT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACTGTCCCAGTCACTGTaGGACAGCTCTGGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVLSQSL*DSSGEG
Trigger: TCCCTCCCCAGAGCTGTCTCACAGTGACTGGGACAG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCTAGGGGATCCGAACTaGCTCTGTCCATGCATTCTC +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFLGDPN*LCPCIL
Trigger: GAGAATGCATGGACAGAGTCAGTTCGGATCCCCTAG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGCACCCAGAACAGGCTaGGAAAAGGCTGGCGGCTAC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETAPRTG*EKAGGY
Trigger: GTAGCCGCCAGCCTTTTCTCAGCCTGTTCTGGGTGC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAATCGACTTGGGTTCTaGTTCAGGTTGTTTGAAACC +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGNRLGF*FRLFET
Trigger: GGTTTCAAACAACCTGAATCAGAACCCAAGTCGATT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACAAACGAGACAGCAATaGCTAGAGAGAGGCACGAGA +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARQTRQQ*LERGTR
Trigger: TCTCGTGCCTCTCTCTAGTCATTGCTGTCTCGTTTG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCAAGGAATTGTGGGTTaGAGATCTGAGGAATACACA +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGQGIVG*RSEEYT
Trigger: TGTGTATTCCTCAGATCTGCAACCCACAATTCCTTG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAGGTCAGGGTGGGACCTaGGGGGCCAGGGTAGCACCC +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKGQGGT*GARVAP
Trigger: GGGTGCTACCCTGGCCCCCCAGGTCCCACCCTGACC...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGGTAAAAATAAGAAGGTaGGGGAAGAGTGTGGGCGGG +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEVKIRR*GKSVGG
Trigger: CCCGCCCACACTCTTCCCCCACCTTCTTATTTTTAC...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTACACCTATGAGTATATaGGCAGCACAAATTGGCCAC +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSTPMSI*AAQIGH
Trigger: GTGGCCAATTTGTGCTGCCCATATACTCATAGGTGT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGTACGGCCAATTAACTaGTCCAGAATGTTGCTGGCC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARVRPIN*SRMLLA
Trigger: GGCCAGCAACATTCTGGACCAGTTAATTGGCCGTAC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACCAAGGGTTTTCTTTTaGCTGGTGTGTGGACAGGAC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARPRVFF*LVCGQD
Trigger: GTCCTGTCCACACACCAGCCAAAAGAAAACCCTTGG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAAGGCACTTTCAAGCTaGAGTGCAGAAGATTCACAA +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGKALSS*SAEDSQ
Trigger: TTGTGAATCTTCTGCACTCCAGCTTGAAAGTGCCTT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGGTGGGGTTCCCCATTaGCAGGCAGACTCACAGCAG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVGGVPH*QADSQQ
Trigger: CTGCTGTGAGTCTGCCTGCCAATGGGGAACCCCACC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTCACACTTTAAAGAGTTaGCTGAGGGCTAGAATGTCC +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSHTLKS*LRARMS
Trigger: GGACATTCTAGCCCTCAGCCAACTCTTTAAAGTGTG...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTaGAGGGCTGGCTTAGAAACAGGGAACCTAGGCTGTTCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIP*RAGLETGNLGCSPE
Trigger: CTCAGGAGAACAGCCTAGGTTCCCTGTTTCTAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGTGTCTTCCTCCTTTGTaGCACCTGTTTCAAGAGTTT +
Preference number: 2 (lower is better)
Translates to: QAGQEACDSDILGSRDTKCLPPL*HLFQEF
Trigger: AAACTCTTGAAACAGGTGTCACAAAGGAGGAAGACA...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTATAAGCAGTCAGAGCTaGTGCTGGGGCAAAGAGGTG +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAISSQS*CWGKEV
Trigger: CACCTCTTTGCCCCAGCATCAGCTCTGACTGCTTAT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGCAAGGAATTGTGGGTTaGAGATCTGAGGAATACACA +
Preference number: 2 (lower is better)
Translates to: QAGQEACDSDILGSRDTKQGIVG*RSEEYT
Trigger: TGTGTATTCCTCAGATCTGCAACCCACAATTCCTTG...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCACAGATGCTTCCTATaGACGCTGGGTTACCAGCAA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFHRCFL*TLGYQQ
Trigger: TTGCTGGTAACCCAGCGTGCATAGGAAGCATCTGTG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTAACTCTGCAGGGCAATaGTTTGGAATATTCTCTTGG +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSNSAGQ*FGIFSW
Trigger: CCAAGAGAATATTCCAAAGCATTGCCCTGCAGAGTT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAATCTTCCCTGGGAAGTaGAGGGTTAACCTTTCTTGC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARIFPGK*RVNLSC
Trigger: GCAAGAAAGGTTAACCCTCCACTTCCCAGGGAAGAT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTTCATTCATATCTTCCTaGTCTCAAGACACAGGGGTT +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSSFISS*SQDTGV
Trigger: AACCCCTGTGTCTTGAGACCAGGAAGATATGAATGA...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGGTAAAAATAAGAAGGTaGGGGAAGAGTGTGGGCGGG +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRVKIRR*GKSVGG
Trigger: CCCGCCCACACTCTTCCCCCACCTTCTTATTTTTAC...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGGTGGAGATATGGGTGTaGTGTAAAAATAAGAAGGTG +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGVEIWV*CKNKKV
Trigger: CACCTTCTTATTTTTACACCACACCCATATCTCCAC...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTAGAAGTTGGGAGGGGTaGAGATATGGGTGTGGTGTA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFRSWEG*RYGCGV
Trigger: TACACCACACCCATATCTCCACCCCTCCCAACTTCT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGCAGGAAAGAGATGGTaGCTGTGCAGGAGAGGCCTC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETAGKRW*LCRRGL
Trigger: GAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATGGATACAAATCACGTaGGCAATTTCAGAGCCCGGA +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARWIQIT*AISEPG
Trigger: TCCGGGCTCTGAAATTGCCCACGTGATTTGTATCCA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGAGCAACTAGCAAATTaGCAAGAAACAGGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGAREQLAN*QETGAQ
Trigger: CTGAGCTCCTGTTTCTTGTCAATTTGCTAGTTGCTC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTAATAAGCAGTCAGAGCTaGTGCTGGGGCAAAGAGGTG +
Preference number: 2 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLISSQS*CWGKEV
Trigger: CACCTCTTTGCCCCAGCATCAGCTCTGACTGCTTAT...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGCGGCATCCACCCACTaGGGACCAAAGATGCTGAAT +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETAASTH*GPKMLN
Trigger: ATTCAGCATCTTTGGTCCTCAGTGGGTGGATGCCGC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATCCCAGGACATGTTCTaGAGAAGTTTTGGGTGGATT +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARSQDMF*RSFGWI
Trigger: AATCCACCCAAAACTTCTTCAGAACATGTCCTGGGA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAGACAGCATGGAGCATaGGGCGGACAGCAGAAACAG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVRQHGA*GGQQKQ
Trigger: CTGTTTCTGCTGTCCGCCTCATGCTCCATGCTGTCT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCCAAAGGCATTATGGTaGTCTCGAAATATTTTTGGT +
Preference number: 2 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGPKALW*SRNIFG
Trigger: ACCAAAAATATTTCGAGATCACCATAATGCCTTTGG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGGACTCTGCATCCTTTaGAACTCAACAGTGCAGTAT +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARGLCIL*NSTVQY
Trigger: ATACTGCACTGTTGAGTTGCAAAGGATGCAGAGTCC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCGGACTCTGCATCCTTTaGAACTCAACAGTGCAGTAT +
Preference number: 2 (lower is better)
Translates to: TIYPQAGQEACDSDILGSGLCIL*NSTVQY
Trigger: ATACTGCACTGTTGAGTTGCAAAGGATGCAGAGTCC...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTCCAGCCACAGGACTCTaGATCCTTTGCAACTCAACA +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAPATGL*ILCNST
Trigger: TGTTGAGTTGCAAAGGATGCAGAGTCCTGTGGCTGG...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATATGGCCACGGTGGGTGTaGTGGCTAGTTTTATGTCAA +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIWPRWV*WLVLCQ
Trigger: TTGACATAAAACTAGCCAGCACACCCACCGTGGCCA...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAACTGGTCCAGAATGTTaGTGGCCTCCAGGTAGCTGG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVTGPEC*WPPGSW
Trigger: CCAGCTACCTGGAGGCCAGCAACATTCTGGACCAGT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTTCCCCAAGGAATTGTaGGTTGCAGATCTGAGGAAT +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEFPKEL*VADLRN
Trigger: ATTCCTCAGATCTGCAACCCACAATTCCTTGGGGAA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTTGCAGGGCAATGCTTTaGAATATTCTCTTGGTAAGA +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSCRAML*NILLVR
Trigger: TCTTACCAAGAGAATATTCCAAAGCATTGCCCTGCA...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTATCTTCCCTGGGAAGTaGAGGGTTAACCTTTCTTGC +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFIFPGK*RVNLSC
Trigger: GCAAGAAAGGTTAACCCTCCACTTCCCAGGGAAGAT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGCTCAGTTTAAAAGTGTaGTTCCTGGCAGGCTTGACC +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRLSLKV*FLAGLT
Trigger: GGTCAAGCCTGCCAGGAACCACACTTTTAAACTGAG...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAAGGCACGGCTTTTCTaGGAGGCTTTGGCAGCTGTG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVKARLF*EALAAV
Trigger: CACAGCTGCCAAAGCCTCCCAGAAAAGCCGTGCCTT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACATGCTGTACAGGACAGTaGTGGTGGGGTTCCCCATTG +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETCCTGQ*WWGSPL
Trigger: CAATGGGGAACCCCACCACCACTGTCCTGTACAGCA...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTATGCTGTACAGGACAGTaGTGGTGGGGTTCCCCATTG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVCCTGQ*WWGSPL
Trigger: CAATGGGGAACCCCACCACCACTGTCCTGTACAGCA...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATGTCTTCCTCCTTTGTaGCACCTGTTTCAAGAGTTT +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARCLPPL*HLFQEF
Trigger: AAACTCTTGAAACAGGTGTCACAAAGGAGGAAGACA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTGAGCAACTAGCAAATTaGCAAGAAACAGGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFEQLAN*QETGAQ
Trigger: CTGAGCTCCTGTTTCTTGTCAATTTGCTAGTTGCTC...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGAATGCAGAGAGGCAATaGGCAACTAGCAAATTGACA +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTENAERQ*ATSKLT
Trigger: TGTCAATTTGCTAGTTGCTCATTGCCTCTCTGCATT...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAAATGCAGAGAGGCAATaGGCAACTAGCAAATTGACA +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARNAERQ*ATSKLT
Trigger: TGTCAATTTGCTAGTTGCTCATTGCCTCTCTGCATT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACTCTTGGTAAGAGAATaGGGGAATCTGCTTGAAAAG +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARLLVRE*GNLLEK
Trigger: CTTTTCAAGCAGATTCCCTCATTCTCTTACCAAGAG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGGTTCCTGGCAGGCTTaGCCATGTTCCAATGGATGT +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETGSWQA*PCSNGC
Trigger: ACATCCATTGGAACATGGTCAAGCCTGCCAGGAACC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGTCCCAGGACATGTTCTaGAGAAGTTTTGGGTGGATT +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRSQDMF*RSFGWI
Trigger: AATCCACCCAAAACTTCTTCAGAACATGTCCTGGGA...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGATCTAAAAGTCCTCTaGAGAATTTTAACACCAAGG +
Preference number: 2 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSDLKVL*RILTPR
Trigger: CCTTGGTGTTAAAATTCTTCAGAGGACTTTTAGATC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACTGATTCAGGTTGTTTaGAACCAAGTCATCAGCTTC +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARLIQVV*NQVISF
Trigger: GAAGCTGATGACTTGGTTTCAAACAACCTGAATCAG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGGATGAGCCTTCTGCTTaGTCGGTTGATGACAAGTTT +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRDEPSA*SVDDKF
Trigger: AAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATC...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTATCTTCCCTGGGAAGTaGAGGGTTAACCTTTCTTGC +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAIFPGK*RVNLSC
Trigger: GCAAGAAAGGTTAACCCTCCACTTCCCAGGGAAGAT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTAAAAGAATGAGAAGTTaGGAGGGGTGGAGATATGGG +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFKRMRS*EGWRYG
Trigger: CCCATATCTCCACCCCTCCCAACTTCTCATTCTTTT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGACACCTATGAGTATATaGGCAGCACAAATTGGCCAC +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRTPMSI*AAQIGH
Trigger: GTGGCCAATTTGTGCTGCCCATATACTCATAGGTGT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAACCCAGGCTTTCACTTaGGAAATAAAAGCAACTCTG +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARTQAFT*EIKATL
Trigger: CAGAGTTGCTTTTATTTCCCAAGTGAAAGCCTGGGT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGACCCAGGCTTTCACTTaGGAAATAAAAGCAACTCTG +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTETQAFT*EIKATL
Trigger: CAGAGTTGCTTTTATTTCCCAAGTGAAAGCCTGGGT...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGCCAGGGATTAGAGACTaGGATGAGAGGTTAGAACAT +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRPGIRD*DERLEH
Trigger: ATGTTCTAACCTCTCATCCCAGTCTCTAATCCCTGG...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCCAGGGATTAGAGACTaGGATGAGAGGTTAGAACAT +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFPGIRD*DERLEH
Trigger: ATGTTCTAACCTCTCATCCCAGTCTCTAATCCCTGG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTTATTCTACCCTTCCATaGGACGCCAGAGCATATACA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFYSTLP*DARAYT
Trigger: TGTATATGCTCTGGCGTCCCATGGAAGGGTAGAATA...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 90 bp TGTGTGGACAGGACATTGCTGCTGGGATGTATGGTAAATAGAAATTaGACTCAGAGCCTGCGGCTGGAGAACTGTCCTCTGAGGAAACAA +
Preference number: 2 (lower is better)
Translates to: CVDRTLLLGCMVNRN*TQSLRLENCPLRKQ
Trigger: TTGTTTCCTCAGAGGACAGTTCTCCAGCCGCAGGCTCTGAGTCAAATTTCTATTTACCATACATCCCAGCAGCAATGTCCTGTCCACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 90 bp AAGCTGACACACACTTTAAAGAGTTGGCTGAGGGCTAGAATGTCCTaGAAAATGCCGAGTTGCAAATGGTGTGCTCTTCGCAAGTCCCTC +
Preference number: 2 (lower is better)
Translates to: KLTHTLKSWLRARMS*KMPSCKWCALRKSL
Trigger: GAGGGACTTGCGAAGAGCACACCATTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCTCAGCCAACTCTTTAAAGTGTGTGTCAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACTGTCCCAGTCACTGTaGGACAGCTCTGGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKLSQSL*DSSGEG
Trigger: TCCCTCCCCAGAGCTGTCTCACAGTGACTGGGACAG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGATCAATATGCTAATGTaGCCAGTAAGAGAAAGGGCA +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEINMLM*PVRERA
Trigger: TGCCCTTTCTCTTACTGGTCACATTAGCATATTGAT...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAAAGGCTTTTCAGAAATaGCACGTGCAGGGCTTAGCC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETKAFQK*HVQGLA
Trigger: GGCTAAGCCCTGCACGTGTCATTTCTGAAAAGCCTT...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACAAACGAGACAGCAATaGCTAGAGAGAGGCACGAGA +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVQTRQQ*LERGTR
Trigger: TCTCGTGCCTCTCTCTAGTCATTGCTGTCTCGTTTG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCAAGGAATTGTGGGTTaGAGATCTGAGGAATACACA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFQGIVG*RSEEYT
Trigger: TGTGTATTCCTCAGATCTGCAACCCACAATTCCTTG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACCAGCCACAGGACTCTaGATCCTTTGCAACTCAACA +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVPATGL*ILCNST
Trigger: TGTTGAGTTGCAAAGGATGCAGAGTCCTGTGGCTGG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGAGGGTTAACCTTTCTTaGTTCCCCAGTGAAAAAGCA +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRRVNLS*FPSEKA
Trigger: TGCTTTTTCACTGGGGAAGCAAGAAAGGTTAACCCT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGAAACAAAAGGCGCTTaGTTCAGCCTCGCCATCATC +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVETKGA*FSLAII
Trigger: GATGATGGCGAGGCTGAAGCAAGCGCCTTTTGTTTC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGAAACAAAAGGCGCTTaGTTCAGCCTCGCCATCATC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETETKGA*FSLAII
Trigger: GATGATGGCGAGGCTGAAGCAAGCGCCTTTTGTTTC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGGCCACGGGACCCAATaGAGATTCACAGAGAAAACA +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETGHGTQ*RFTEKT
Trigger: TGTTTTCTCTGTGAATCTGCATTGGGTCCCGTGGCC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTTTCCCCAAGGAATTGTaGGTTGCAGATCTGAGGAAT +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAFPKEL*VADLRN
Trigger: ATTCCTCAGATCTGCAACCCACAATTCCTTGGGGAA...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTTCATTCATATCTTCCTaGTCTCAAGACACAGGGGTT +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFSFISS*SQDTGV
Trigger: AACCCCTGTGTCTTGAGACCAGGAAGATATGAATGA...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAGGAAGAAGAGGACAGTaGGGCAGCCGACACACCACC +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKGRRGQ*GSRHTT
Trigger: GGTGGTGTGTCGGCTGCCCCACTGTCCTCTTCTTCC...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGGTGGAGATATGGGTGTaGTGTAAAAATAAGAAGGTG +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEVEIWV*CKNKKV
Trigger: CACCTTCTTATTTTTACACCACACCCATATCTCCAC...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAGAAGTTGGGAGGGGTaGAGATATGGGTGTGGTGTA +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVRSWEG*RYGCGV
Trigger: TACACCACACCCATATCTCCACCCCTCCCAACTTCT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAAGAAGTTGGGAGGGGTaGAGATATGGGTGTGGTGTA +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETRSWEG*RYGCGV
Trigger: TACACCACACCCATATCTCCACCCCTCCCAACTTCT...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGAGTAGCACTCCTTCATaGTCTCTGTATCAACTTGTA +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTESSTPS*SLYQLV
Trigger: TACAAGTTGATACAGAGACCATGAAGGAGTGCTACT...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTACCCAGGCTTTCACTTaGGAAATAAAAGCAACTCTG +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFTQAFT*EIKATL
Trigger: CAGAGTTGCTTTTATTTCCCAAGTGAAAGCCTGGGT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGATAGACGAGATTTCATaGATCGGAGAAAAACTGGCT +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEIDEIS*IGEKLA
Trigger: AGCCAGTTTTTCTCCGATCCATGAAATCTCGTCTAT...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGAGACAGACCCTATCTaGAAAAGGATGAGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVETDPI*KRMRRR
Trigger: CCTCCTCCTCATCCTTTTCCAGATAGGGTCTGTCTC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACCAAGGGTTTTCTTTTaGCTGGTGTGTGGACAGGAC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETPRVFF*LVCGQD
Trigger: GTCCTGTCCACACACCAGCCAAAAGAAAACCCTTGG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAGGCTGAGAAAAGGCTaGCGGCTACAAGGTAGTACT +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVRLRKG*RLQGST
Trigger: AGTACTACCTTGTAGCCGCCAGCCTTTTCTCAGCCT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAAGGCTGAGAAAAGGCTaGCGGCTACAAGGTAGTACT +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETRLRKG*RLQGST
Trigger: AGTACTACCTTGTAGCCGCCAGCCTTTTCTCAGCCT...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTTGTCTTCCTCCTTTGTaGCACCTGTTTCAAGAGTTT +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRACLPPL*HLFQEF
Trigger: AAACTCTTGAAACAGGTGTCACAAAGGAGGAAGACA...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAAATGCAGAGAGGCAATaGGCAACTAGCAAATTGACA +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSINAERQ*ATSKLT
Trigger: TGTCAATTTGCTAGTTGCTCATTGCCTCTCTGCATT...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATACTCTTGGTAAGAGAATaGGGGAATCTGCTTGAAAAG +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSILLVRE*GNLLEK
Trigger: CTTTTCAAGCAGATTCCCTCATTCTCTTACCAAGAG...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTCTCTTGGTAAGAGAATaGGGGAATCTGCTTGAAAAG +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRALLVRE*GNLLEK
Trigger: CTTTTCAAGCAGATTCCCTCATTCTCTTACCAAGAG...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTATCAATATGCTAATGTaGCCAGTAAGAGAAAGGGCA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFINMLM*PVRERA
Trigger: TGCCCTTTCTCTTACTGGTCACATTAGCATATTGAT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGAGAGAACACACATTTaGCTAAGTTCTTCAAGTTGT +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARERTHI*LSSSSC
Trigger: ACAACTTGAAGAACTTAGTCAAATGTGTGTTCTCTC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTAGATGAGCCTTCTGCTTaGTCGGTTGATGACAAGTTT +
Preference number: 2 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLDEPSA*SVDDKF
Trigger: AAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATC...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTAACTCTGCAGGGCAATaGTTTGGAATATTCTCTTGG +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRANSAGQ*FGIFSW
Trigger: CCAAGAGAATATTCCAAAGCATTGCCCTGCAGAGTT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTTTGTGTGTGTGTGTGTaGACATTTGTATGTGCTCAC +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRALCVCV*TFVCAH
Trigger: GTGAGCACATACAAATGTGCACACACACACACACAA...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGATAAGGGAGGCACATTaGAAATGGAAACATCTTGCA +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRIREAH*KWKHLA
Trigger: TGCAAGATGTTTCCATTTGCAATGTGCCTCCCTTAT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTTTAAATACCTGGTCTaGAGACAGATAAAGGTGAGA +
Preference number: 2 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEFKYLV*RQIKVR
Trigger: TCTCACCTTTATCTGTCTGCAGACCAGGTATTTAAA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACCACTAACTCTAACCTaGACTGAGAAATTATCCTTT +
Preference number: 2 (lower is better)
Translates to: MTGLVGPDPMVVNELGARPLTLT*TEKLSF
Trigger: AAAGGATAATTTCTCAGTGCAGGTTAGAGTTAGTGG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACGTGAACGAATTGGGTaGAAGACACACACACAAAGG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVRERIG*KTHTQR
Trigger: CCTTTGTGTGTGTGTCTTGCACCCAATTCGTTCACG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACATGGATGTGTGGATTCTaGCCACCTCTTTCAGAGAGA +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETWMCGF*PPLSER
Trigger: TCTCTCTGAAAGAGGTGGGCAGAATCCACACATCCA...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTTGCAGGGCAATGCTTTaGAATATTCTCTTGGTAAGA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFCRAML*NILLVR
Trigger: TCTTACCAAGAGAATATTCCAAAGCATTGCCCTGCA...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACATTCCTTTGAGGGCTaGCTTAGAAACAGGGAACCT +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETHSFEG*LRNREP
Trigger: AGGTTCCCTGTTTCTAAGCCAGCCCTCAAAGGAATG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACATTCCTTTGAGGGCTaGCTTAGAAACAGGGAACCT +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVHSFEG*LRNREP
Trigger: AGGTTCCCTGTTTCTAAGCCAGCCCTCAAAGGAATG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGGTGGAGATATGGGTGTaGTGTAAAAATAAGAAGGTG +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRVEIWV*CKNKKV
Trigger: CACCTTCTTATTTTTACACCACACCCATATCTCCAC...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGAGTAGCACTCCTTCATaGTCTCTGTATCAACTTGTA +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRSSTPS*SLYQLV
Trigger: TACAAGTTGATACAGAGACCATGAAGGAGTGCTACT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACTCAGTTTAAAAGTGTaGTTCCTGGCAGGCTTGACC +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVLSLKV*FLAGLT
Trigger: GGTCAAGCCTGCCAGGAACCACACTTTTAAACTGAG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACTCAGTTTAAAAGTGTaGTTCCTGGCAGGCTTGACC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETLSLKV*FLAGLT
Trigger: GGTCAAGCCTGCCAGGAACCACACTTTTAAACTGAG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGATAGACGAGATTTCATaGATCGGAGAAAAACTGGCT +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRIDEIS*IGEKLA
Trigger: AGCCAGTTTTTCTCCGATCCATGAAATCTCGTCTAT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAGCAGGAAAGAGATGGTaGCTGTGCAGGAGAGGCCTC +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKAGKRW*LCRRGL
Trigger: GAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGC...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTACTCTTGGTAAGAGAATaGGGGAATCTGCTTGAAAAG +
Preference number: 2 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLLLVRE*GNLLEK
Trigger: CTTTTCAAGCAGATTCCCTCATTCTCTTACCAAGAG...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTAAAGGGAACCTCAATTaGGAAAACATCTCCATAAGA +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFKGNLN*ENISIR
Trigger: TCTTATGGAGATGTTTTCTCAATTGAGGTTCCCTTT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGAAAGGGAACCTCAATTaGGAAAACATCTCCATAAGA +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRKGNLN*ENISIR
Trigger: TCTTATGGAGATGTTTTCTCAATTGAGGTTCCCTTT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACATGCTTTTATCTAAAATaGTGTAGTGTGGGCCACGGG +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETCFYLK*CSVGHG
Trigger: CCCGTGGCCCACACTACATCATTTTAGATAAAAGCA...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGGACTCTGCATCCTTTaGAACTCAACAGTGCAGTAT +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETGLCIL*NSTVQY
Trigger: ATACTGCACTGTTGAGTTGCAAAGGATGCAGAGTCC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGATGAGCCTTCTGCTTaGTCGGTTGATGACAAGTTT +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVDEPSA*SVDDKF
Trigger: AAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTAAGGGTTAACCTTTCTTaGTTCCCCAGTGAAAAAGCA +
Preference number: 2 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLRVNLS*FPSEKA
Trigger: TGCTTTTTCACTGGGGAAGCAAGAAAGGTTAACCCT...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCAAATGGAAACATCTTaGACATTCTTCTCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFQMETS*TFFSGL
Trigger: AAGACCAGAGAAGAATGTGCAAGATGTTTCCATTTG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGCAAATGGAAACATCTTaGACATTCTTCTCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRQMETS*TFFSGL
Trigger: AAGACCAGAGAAGAATGTGCAAGATGTTTCCATTTG...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAATAAGGGAGGCACATTaGAAATGGAAACATCTTGCA +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIIREAH*KWKHLA
Trigger: TGCAAGATGTTTCCATTTGCAATGTGCCTCCCTTAT...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGTGGAGATATGGGTGTaGTGTAAAAATAAGAAGGTG +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIVEIWV*CKNKKV
Trigger: CACCTTCTTATTTTTACACCACACCCATATCTCCAC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAAGTAGCACTCCTTCATaGTCTCTGTATCAACTTGTA +
Preference number: 2 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSISSTPS*SLYQLV
Trigger: TACAAGTTGATACAGAGACCATGAAGGAGTGCTACT...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACCAGGGATTAGAGACTaGGATGAGAGGTTAGAACAT +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVPGIRD*DERLEH
Trigger: ATGTTCTAACCTCTCATCCCAGTCTCTAATCCCTGG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACACACTTTAAAGAGTTaGCTGAGGGCTAGAATGTCC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETHTLKS*LRARMS
Trigger: GGACATTCTAGCCCTCAGCCAACTCTTTAAAGTGTG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAAATGCAGAGAGGCAATaGGCAACTAGCAAATTGACA +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETNAERQ*ATSKLT
Trigger: TGTCAATTTGCTAGTTGCTCATTGCCTCTCTGCATT...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAATAAGCAGTCAGAGCTaGTGCTGGGGCAAAGAGGTG +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKISSQS*CWGKEV
Trigger: CACCTCTTTGCCCCAGCATCAGCTCTGACTGCTTAT...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAACCAGTGCCCCATTGGCTTTACATAAGGGAGGCACATTGCAAATGGAAACATCAAGGAATTGTGGGTTaGAGATCTGAGGAATACACA +
Preference number: 2 (lower is better)
Translates to: EPVPHWLYIREAHCKWKHQGIVG*RSEEYT
Trigger: TGTGTATTCCTCAGATCTGCAACCCACAATTCCTTG...ATGTTTCCATTTGCAATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAACTCTGCAGGGCAATaGTTTGGAATATTCTCTTGG +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVNSAGQ*FGIFSW
Trigger: CCAAGAGAATATTCCAAAGCATTGCCCTGCAGAGTT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTCAAATGGAAACATCTTaGACATTCTTCTCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAQMETS*TFFSGL
Trigger: AAGACCAGAGAAGAATGTGCAAGATGTTTCCATTTG...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTAAGTCAAATCAGAAATaGTCTTTAAAGAGGAGTCAG +
Preference number: 2 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFKSNQK*SLKRSQ
Trigger: CTGACTCCTCTTTAAAGAGCATTTCTGATTTGACTT...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAGGAGAGAAAACTACTaGAAACGAGACAGCAATGAC +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVRRENY*KRDSND
Trigger: GTCATTGCTGTCTCGTTTGCAGTAGTTTTCTCTCCT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTATGCAGGGCAATGCTTTaGAATATTCTCTTGGTAAGA +
Preference number: 2 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLCRAML*NILLVR
Trigger: TCTTACCAAGAGAATATTCCAAAGCATTGCCCTGCA...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAAAGGCTTTTCAGAAATaGCACGTGCAGGGCTTAGCC +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKKAFQK*HVQGLA
Trigger: GGCTAAGCCCTGCACGTGTCATTTCTGAAAAGCCTT...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTTTTGCAACTCAACAGTaGAGTATTCATGCCAATTTT +
Preference number: 2 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAFATQQ*SIHANF
Trigger: AAAATTGGCATGAATACTGCACTGTTGAGTTGCAAA...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACCAGCCACAGGACTCTaGATCCTTTGCAACTCAACA +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKPATGL*ILCNST
Trigger: TGTTGAGTTGCAAAGGATGCAGAGTCCTGTGGCTGG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACACAGATGCTTCCTATaGACGCTGGGTTACCAGCAA +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKHRCFL*TLGYQQ
Trigger: TTGCTGGTAACCCAGCGTGCATAGGAAGCATCTGTG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAACCAGTGCCCCATTGGCTTTACATAAGGGAGGCACATTGCAAATGGAAACATTGCAGGGCAATGCTTTaGAATATTCTCTTGGTAAGA +
Preference number: 2 (lower is better)
Translates to: EPVPHWLYIREAHCKWKHCRAML*NILLVR
Trigger: TCTTACCAAGAGAATATTCCAAAGCATTGCCCTGCA...ATGTTTCCATTTGCAATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAGAGACAGACCCTATCTaGAAAAGGATGAGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKETDPI*KRMRRR
Trigger: CCTCCTCCTCATCCTTTTCCAGATAGGGTCTGTCTC...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACATCCCATTCTGAGATaGCAGATAGCCACAGGAGAT +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKHPILR*QIATGD
Trigger: ATCTCCTGTGGCTATCTGTCATCTCAGAATGGGATG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACTTTTGAAACACAAATaGGAAGGATTTTGGCTTGTC +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETLLKHK*EGFWLV
Trigger: GACAAGCCAAAATCCTTCTCATTTGTGTTTCAAAAG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACCACTAACTCTAACCTaGACTGAGAAATTATCCTTT +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVPLTLT*TEKLSF
Trigger: AAAGGATAATTTCTCAGTGCAGGTTAGAGTTAGTGG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGTGAGGCCTACCCTTTaGAACACAGTAAATTTAAAA +
Preference number: 2 (lower is better)
Translates to: DQMKCLRHKPILYTLHETVRPTL*NTVNLK
Trigger: TTTTAAATTTACTGTGTTGCAAAGGGTAGGCCTCAC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACTCAGTTTAAAAGTGTaGTTCCTGGCAGGCTTGACC +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKLSLKV*FLAGLT
Trigger: GGTCAAGCCTGCCAGGAACCACACTTTTAAACTGAG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR TCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATCCCAGGACATGTTCTaGAGAAGTTTTGGGTGGATT +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKSQDMF*RSFGWI
Trigger: AATCCACCCAAAACTTCTTCAGAACATGTCCTGGGA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTATTATGTCTCTTTCATTaGAAAGATGGCCTTTACACT +
Preference number: 2 (lower is better)
Translates to: DVWILPTSFRERRDKMSVLCLFH*KDGLYT
Trigger: AGTGTAAAGGCCATCTTTCCAATGAAAGAGACATAA...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAAGGGTTAACCTTTCTTaGTTCCCCAGTGAAAAAGCA +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKRVNLS*FPSEKA
Trigger: TGCTTTTTCACTGGGGAAGCAAGAAAGGTTAACCCT...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATTGTGTGTGTGTGTGTaGACATTTGTATGTGCTCAC +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKLCVCV*TFVCAH
Trigger: GTGAGCACATACAAATGTGCACACACACACACACAA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAATAGACGAGATTTCATaGATCGGAGAAAAACTGGCT +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKIDEIS*IGEKLA
Trigger: AGCCAGTTTTTCTCCGATCCATGAAATCTCGTCTAT...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR GCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATTTAAATACCTGGTCTaGAGACAGATAAAGGTGAGA +
Preference number: 2 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKFKYLV*RQIKVR
Trigger: TCTCACCTTTATCTGTCTGCAGACCAGGTATTTAAA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp TCCCCGCTGCCACACTGCTGTACAGGACAGTGGTGGTaGGGTTCCCCATTGGCAGGCAGACTCACAGCAGGC +
Preference number: 3 (lower is better)
Translates to: SPLPHCCTGQWW*GSPLAGRLTAG
Trigger: GCCTGCTGTGAGTCTGCCTGCCAATGGGGAACCCCACCACCACTGTCCTGTACAGCAGTGTGGCAGCGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CAGAGCCATGGTGTCTGCCCACTGGCCGGGATTCGGTaGTTGCGCATAAGTTCCTTCCCAGGGATGCAGAGC +
Preference number: 3 (lower is better)
Translates to: QSHGVCPLAGIR*LRISSFPGMQS
Trigger: GCTCTGCATCCCTGGGAAGGAACTTATGCGCAAGCACCGAATCCCGGCCAGTGGGCAGACACCATGGCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CATGGACACAGTGGGGGAAGGCAGAGCCATGGTGTCTaGCCACTGGCCGGGATTCGGTGCTTGCGCATAAGT +
Preference number: 3 (lower is better)
Translates to: HGHSGGRQSHGV*PLAGIRCLRIS
Trigger: ACTTATGCGCAAGCACCGAATCCCGGCCAGTGGGCAGACACCATGGCTCTGCCTTCCCCCACTGTGTCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGTGGTGGGGTTCCCCATaGGCAGGCAGACTCACAGCA +
Preference number: 3 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGWWGSP*AGRLTA
Trigger: TGCTGTGAGTCTGCCTGCCAATGGGGAACCCCACCA...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp GAAGAAGAGGACAGTGGGGCAGCCGACACACCACCCTaGCTCTGTGACATCTTTGCCAGCCCACTGCCAACC +
Preference number: 3 (lower is better)
Translates to: EEEDSGAADTPP*LCDIFASPLPT
Trigger: GGTTGGCAGTGGGCTGGCAAAGATGTCACAGAGTCAGGGTGGTGTGTCGGCTGCCCCACTGTCCTCTTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp GCATACACAGACACAAGAGTTCGCAGGGCTCCCCGCTaGCACACTGCTGTACAGGACAGTGGTGGTGGGGTT +
Preference number: 3 (lower is better)
Translates to: AYTDTRVRRAPR*HTAVQDSGGGV
Trigger: AACCCCACCACCACTGTCCTGTACAGCAGTGTGGCAGCGGGGAGCCCTGCGAACTCTTGTGTCTGTGTATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp TCCTTCCCAGGGATGCAGAGCCGGGTGATGAGTTGGTaGACATGCCGGGAGAGGCGGCATACACAGACACAA +
Preference number: 3 (lower is better)
Translates to: SFPGMQSRVMSW*TCRERRHTQTQ
Trigger: TTGTGTCTGTGTATGCCGCCTCTCCCGGCATGTCCACCAACTCATCACCCGGCTCTGCATCCCTGGGAAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp AGTTCCTTCCCAGGGATGCAGAGCCGGGTGATGAGTTaGTGGACATGCCGGGAGAGGCGGCATACACAGACA +
Preference number: 3 (lower is better)
Translates to: SSFPGMQSRVMS*WTCRERRHTQT
Trigger: TGTCTGTGTATGCCGCCTCTCCCGGCATGTCCACCAACTCATCACCCGGCTCTGCATCCCTGGGAAGGAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGGACTCTGTGACATCTTaGCCAGCCCACTGCCAACCA +
Preference number: 3 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGDSVTS*PAHCQP
Trigger: TGGTTGGCAGTGGGCTGGCAAAGATGTCACAGAGTC...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp AGCAAGATGTCCAGGATAGATCTGTCCCAGTCACTGTaGGACAGCTCTGGGGAGGGAACGGTGAGGGCAGGG +
Preference number: 3 (lower is better)
Translates to: SKMSRIDLSQSL*DSSGEGTVRAG
Trigger: CCCTGCCCTCACCGTTCCCTCCCCAGAGCTGTCTCACAGTGACTGGGACAGATCTATCCTGGACATCTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp AGCACAGGGTACGGCCAATTAACTGGTCCAGAATGTTaGTGGCCTCCAGGTAGCTGGACTCTGGGCATCCCA +
Preference number: 3 (lower is better)
Translates to: STGYGQLTGPEC*WPPGSWTLGIP
Trigger: TGGGATGCCCAGAGTCCAGCTACCTGGAGGCCAGCAACATTCTGGACCAGTTAATTGGCCGTACCCTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp CACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTaGGGAGCAGAGACACCAAGCCTGATGAGCCTTCTG +
Preference number: 3 (lower is better)
Translates to: HRLARKLVTVTF*GAETPSLMSLL
Trigger: CAGAAGGCTCATCAGGCTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGACCTTCCCCAAGGAATaGTGGGTTGCAGATCTGAGG +
Preference number: 3 (lower is better)
Translates to: QAGQEACDSDILGSRDTKTFPKE*WVADLR
Trigger: CCTCAGATCTGCAACCCACAATTCCTTGGGGAAGGT...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAGGGTAGCCATTCCTTaGAGGGCTGGCTTAGAAACA +
Preference number: 3 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGRVAIP*RAGLET
Trigger: TGTTTCTAAGCCAGCCCTCAAAGGAATGGCTACCCT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp ACGGGGCCAATTAGCAAGTGGGCACCCAGAACAGGCTaGGAAAAGGCTGGCGGCTACAAGGTAGTACTAAGG +
Preference number: 3 (lower is better)
Translates to: TGPISKWAPRTG*EKAGGYKVVLR
Trigger: CCTTAGTACTACCTTGTAGCCGCCAGCCTTTTCTCAGCCTGTTCTGGGTGCCCACTTGCTAATTGGCCCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTACCAAGGGTTTTCTTTaGGCTGGTGTGTGGACAGGA +
Preference number: 3 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSTKGFL*AGVWTG
Trigger: TCCTGTCCACACACCAGCCAAAAGAAAACCCTTGGT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp GCCAAAGATGGAAGAGAAGCCCTCACCCTTGTCCTGTaGCTAAATAGCTGGGAGCCTGGACCAGACACCTCT +
Preference number: 3 (lower is better)
Translates to: AKDGREALTLVL*LNSWEPGPDTS
Trigger: AGAGGTGTCTGGTCCAGGCTCCCAGCTATTTAGTCACAGGACAAGGGTGAGGGCTTCTCTTCCATCTTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CAGACTCACAGCAGGCAGGGACCACACGTTGCTCGGTaGTCTCATGAATACAAGCCTGCGGTTGGTTATTCA +
Preference number: 3 (lower is better)
Translates to: QTHSRQGPHVAR*SHEYKPAVGYS
Trigger: TGAATAACCAACCGCAGGCTTGTATTCATGAGAGCACCGAGCAACGTGTGGTCCCTGCCTGCTGTGAGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp CACAGAGCTAGAGCCACAGATGCTTCCTATGCACGCTaGGTTACCAGCAACAATCTATCCACAGGCTGGCCA +
Preference number: 3 (lower is better)
Translates to: HRARATDASYAR*VTSNNLSTGWP
Trigger: TGGCCAGCCTGTGGATAGATTGTTGCTGGTAACCCAGCGTGCATAGGAAGCATCTGTGGCTCTAGCTCTGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp CATGTTCCAATGGATGTCCCCACACCTATGAGTATATaGGCAGCACAAATTGGCCACGGTGGGTGTGCTGGC +
Preference number: 3 (lower is better)
Translates to: HVPMDVPTPMSI*AAQIGHGGCAG
Trigger: GCCAGCACACCCACCGTGGCCAATTTGTGCTGCCCATATACTCATAGGTGTGGGGACATCCATTGGAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCACCTTCCCCAAGGAATaGTGGGTTGCAGATCTGAGG +
Preference number: 3 (lower is better)
Translates to: TIYPQAGQEACDSDILGSTFPKE*WVADLR
Trigger: CCTCAGATCTGCAACCCACAATTCCTTGGGGAAGGT...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTCTTCTGCTTGCTCGGTaGATGACAAGTTTCTTCCAG +
Preference number: 3 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSLLLAR*MTSFFQ
Trigger: CTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAG...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTCCTCTAGCTGGTACTaGGGAGGTAAATCCCCAGAG +
Preference number: 3 (lower is better)
Translates to: RKSCRKEMVAVQERPLTESSSWY*GGKSPE
Trigger: CTCTGGGGATTTACCTCCCAAGTACCAGCTAGAGGA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAAAAAGAATGAGAAGTaGGGAGGGGTGGAGATATGG +
Preference number: 3 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGKKNEK*GGVEIW
Trigger: CCATATCTCCACCCCTCCCAACTTCTCATTCTTTTT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTCTTGAAAATGCCGAGTaGCAAATGGTGTGCTCTTCG +
Preference number: 3 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSLENAE*QMVCSS
Trigger: CGAAGAGCACACCATTTGCAACTCGGCATTTTCAAG...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAGGGCTAGAATGTCCTaGAAAATGCCGAGTTGCAAA +
Preference number: 3 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGRARMS*KMPSCK
Trigger: TTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp GGCTTGACCATGTTCCAATGGATGTCCCCACACCTATaGGTATATGGGCAGCACAAATTGGCCACGGTGGGT +
Preference number: 3 (lower is better)
Translates to: GLTMFQWMSPHL*VYGQHKLATVG
Trigger: ACCCACCGTGGCCAATTTGTGCTGCCCATATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp GGGAGCCTGGACCAGACACCTCTCATCCCTTCAAGATaGAGCGGGATAGACTGTGCTCTCTTTTCGTTTGAG +
Preference number: 3 (lower is better)
Translates to: GSLDQTPLIPSR*SGIDCALFSFE
Trigger: CTCAAACGAAAAGAGAGCACAGTCTATCCCGCTTCATCTTGAAGGGATGAGAGGTGTCTGGTCCAGGCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp CCCAGTGAAAAAGCACTTAGGGAAGTAACCCGAGGCTaGCCACATCAGACCAACTCTGCAGGGCAATGCTTT +
Preference number: 3 (lower is better)
Translates to: PSEKALREVTRG*PHQTNSAGQCF
Trigger: AAAGCATTGCCCTGCAGAGTTGGTCTGATGTGGCCAGCCTCGGGTTACTTCCCTAAGTGCTTTTTCACTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp TCGTCCCTAAAGATGGAAGAGATAGGACAGACAGCATaGAGCATGAGGCGGACAGCAGAAACAGTGTCGAGG +
Preference number: 3 (lower is better)
Translates to: SSLKMEEIGQTA*SMRRTAETVSR
Trigger: CCTCGACACTGTTTCTGCTGTCCGCCTCATGCTCCATGCTGTCTGTCCTATCTCTTCCATCTTTAGGGACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp AAGGAAAGATGGCTTCGACCCAGGCGAGGCCAAAGATaGAAGAGAAGCCCTCACCCTTGTCCTGTGACTAAA +
Preference number: 3 (lower is better)
Translates to: KERWLRPRRGQR*KRSPHPCPVTK
Trigger: TTTAGTCACAGGACAAGGGTGAGGGCTTCTCTTCCATCTTTGGCCTCGCCTGGGTCGAAGCCATCTTTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCACCTTCCCCAAGGAATaGTGGGTTGCAGATCTGAGG +
Preference number: 3 (lower is better)
Translates to: TKPDEPSACSVDDKFLPATFPKE*WVADLR
Trigger: CCTCAGATCTGCAACCCACAATTCCTTGGGGAAGGT...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGACTCTGTGACATCTTaGCCAGCCCACTGCCAACCA +
Preference number: 3 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIDSVTS*PAHCQP
Trigger: TGGTTGGCAGTGGGCTGGCAAAGATGTCACAGAGTC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGCAAATGGAAACATCTaGCACATTCTTCTCTGGTCT +
Preference number: 3 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSANGNI*HILLWS
Trigger: AGACCAGAGAAGAATGTGCAAGATGTTTCCATTTGC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGTCTGATTCAGGTTGTTaGAAACCAAGTCATCAGCTT +
Preference number: 3 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGSDSGC*KPSHQL
Trigger: AAGCTGATGACTTGGTTTCAAACAACCTGAATCAGA...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACTTGAAAATGCCGAGTaGCAAATGGTGTGCTCTTCG +
Preference number: 3 (lower is better)
Translates to: MTGLVGPDPMVVNELGARLENAE*QMVCSS
Trigger: CGAAGAGCACACCATTTGCAACTCGGCATTTTCAAG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CTCACGGTTCCCAGGCAGCCTGTCACACTGACACCCTaGGATGTGACTTCTCTAAGATTTAAGGCTTTTCAG +
Preference number: 3 (lower is better)
Translates to: LTVPRQPVTLTP*DVTSLRFKAFQ
Trigger: CTGAAAAGCCTTAAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAACCGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGCTGCAGGGCAATGCTTaGGAATATTCTCTTGGTAAG +
Preference number: 3 (lower is better)
Translates to: RKSCRKEMVAVQERPLTELQGNA*EYSLGK
Trigger: CTTACCAAGAGAATATTCCAAAGCATTGCCCTGCAG...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAAGGGTAGCCATTCCTTaGAGGGCTGGCTTAGAAACA +
Preference number: 3 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIRVAIP*RAGLET
Trigger: TGTTTCTAAGCCAGCCCTCAAAGGAATGGCTACCCT...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAAGGGCTAGAATGTCCTaGAAAATGCCGAGTTGCAAA +
Preference number: 3 (lower is better)
Translates to: MTGLVGPDPMVVNELGARRARMS*KMPSCK
Trigger: TTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp AGGGCTAGAATGTCCTTGAAAATGCCGAGTTGCAAATaGTGTGCTCTTCGCAAGTCCCTCACAGCACATTCG +
Preference number: 3 (lower is better)
Translates to: RARMSLKMPSCK*CALRKSLTAHS
Trigger: CGAATGTGCTGTGAGGGACTTGCGAAGAGCACACCATTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCATAAGGGAGGCACATaGCAAATGGAAACATCTTGC +
Preference number: 3 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFHKGGT*QMETSC
Trigger: GCAAGATGTTTCCATTTGCAATGTGCCTCCCTTATG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACATCCTCTAGCTGGTACTaGGGAGGTAAATCCCCAGAG +
Preference number: 3 (lower is better)
Translates to: DQMKCLRHKPILYTLHETSSSWY*GGKSPE
Trigger: CTCTGGGGATTTACCTCCCAAGTACCAGCTAGAGGA...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTTTTATGTCTCTTTCATaGGAAAGATGGCCTTTACAC +
Preference number: 3 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSFMSLS*ERWPLH
Trigger: GTGTAAAGGCCATCTTTCCAATGAAAGAGACATAAA...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTTGTTCTGAAGAAGTTTaGGGTGGATTTTTATGTCTC +
Preference number: 3 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSCSEEV*GGFLCL
Trigger: GAGACATAAAAATCCACCCAAAACTTCTTCAGAACA...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp AAGGCTGAACCTTACACAACTCAGGGCAACGAGCTGTaGGAATTGTGGAAGTGGCTAGGAATCCTCAATCCT +
Preference number: 3 (lower is better)
Translates to: KAEPYTTQGNEL*ELWKWLGILNP
Trigger: AGGATTGAGGATTCCTAGCCACTTCCACAATTCTCACAGCTCGTTGCCCTGAGTTGTGTAAGGTTCAGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTCTGCAGGGCAATGCTTaGGAATATTCTCTTGGTAAG +
Preference number: 3 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRALQGNA*EYSLGK
Trigger: CTTACCAAGAGAATATTCCAAAGCATTGCCCTGCAG...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTTCCCCAACTTGCTTTaGGGCATTGTTAACATCATA +
Preference number: 3 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEFPNLL*GIVNII
Trigger: TATGATGTTAACAATGCCCAAAAGCAAGTTGGGGAA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAACTTTATTCCCCAACTaGCTTTTGGGCATTGTTAAC +
Preference number: 3 (lower is better)
Translates to: MTGLVGPDPMVVNELGARTLFPN*LLGIVN
Trigger: GTTAACAATGCCCAAAAGCAAGTTGGGGAATAAAGT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATCTGATTCAGGTTGTTaGAAACCAAGTCATCAGCTT +
Preference number: 3 (lower is better)
Translates to: MTGLVGPDPMVVNELGARSDSGC*KPSHQL
Trigger: AAGCTGATGACTTGGTTTCAAACAACCTGAATCAGA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTTTCCCCAACTTGCTTTaGGGCATTGTTAACATCATA +
Preference number: 3 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFFPNLL*GIVNII
Trigger: TATGATGTTAACAATGCCCAAAAGCAAGTTGGGGAA...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGACTTTATTCCCCAACTaGCTTTTGGGCATTGTTAAC +
Preference number: 3 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRTLFPN*LLGIVN
Trigger: GTTAACAATGCCCAAAAGCAAGTTGGGGAATAAAGT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTGTTCTGAAGAAGTTTaGGGTGGATTTTTATGTCTC +
Preference number: 3 (lower is better)
Translates to: RKSCRKEMVAVQERPLTECSEEV*GGFLCL
Trigger: GAGACATAAAAATCCACCCAAAACTTCTTCAGAACA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp CTTGTAGTCTCAGGTTCCTGCCCTGACTGCCTTCAGTaGTGGGCTAGGATGTGGAAATATAAGTCCACTTTA +
Preference number: 3 (lower is better)
Translates to: LVVSGSCPDCLQ*WARMWKYKSTL
Trigger: TAAAGTGGACTTATATTTCCACATCCTAGCCCATCACTGAAGGCAGTCAGGGCAGGAACCTGAGACTACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp GCTCAGGAGAGAAAACTACTGCAAACGAGACAGCAATaGCTAGAGAGAGGCACGAGAGAACACACATTTGAC +
Preference number: 3 (lower is better)
Translates to: AQERKLLQTRQQ*LERGTREHTFD
Trigger: GTCAAATGTGTGTTCTCTCGTGCCTCTCTCTAGTCATTGCTGTCTCGTTTGCAGTAGTTTTCTCTCCTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CTTATCTTCCCTGGGAAGTGGAGGGTTAACCTTTCTTaGTTCCCCAGTGAAAAAGCACTTAGGGAAGTAACC +
Preference number: 3 (lower is better)
Translates to: LIFPGKWRVNLS*FPSEKALREVT
Trigger: GGTTACTTCCCTAAGTGCTTTTTCACTGGGGAAGCAAGAAAGGTTAACCCTCCACTTCCCAGGGAAGATAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CCAGTGCCCCATTGGCTTTACATAAGGGAGGCACATTaGAAATGGAAACATCTTGCACATTCTTCTCTGGTC +
Preference number: 3 (lower is better)
Translates to: PVPHWLYIREAH*KWKHLAHSSLV
Trigger: GACCAGAGAAGAATGTGCAAGATGTTTCCATTTGCAATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp TTGAGTATGAGGCACCTTCTGGAACAGATCCAGATCTaGTTCGTCCCTAAAGATGGAAGAGATAGGACAGAC +
Preference number: 3 (lower is better)
Translates to: LSMRHLLEQIQI*FVPKDGRDRTD
Trigger: GTCTGTCCTATCTCTTCCATCTTTAGGGACGAAGCAGATCTGGATCTGTTCCAGAAGGTGCCTCATACTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACTGCAGGGCAATGCTTaGGAATATTCTCTTGGTAAG +
Preference number: 3 (lower is better)
Translates to: DVWILPTSFRERRDKMSVLQGNA*EYSLGK
Trigger: CTTACCAAGAGAATATTCCAAAGCATTGCCCTGCAG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAAAAAGAATGAGAAGTaGGGAGGGGTGGAGATATGG +
Preference number: 3 (lower is better)
Translates to: DVWILPTSFRERRDKMSVKKNEK*GGVEIW
Trigger: CCATATCTCCACCCCTCCCAACTTCTCATTCTTTTT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAGGGCTAGAATGTCCTaGAAAATGCCGAGTTGCAAA +
Preference number: 3 (lower is better)
Translates to: DVWILPTSFRERRDKMSVRARMS*KMPSCK
Trigger: TTTGCAACTCGGCATTTTCAAGGACATTCTAGCCCT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp GAGTATATGGGCAGCACAAATTGGCCACGGTGGGTGTaGTGGCTAGTTTTATGTCAACTTAACACAAGCTAT +
Preference number: 3 (lower is better)
Translates to: EYMGSTNWPRWV*WLVLCQLNTSY
Trigger: ATAGCTTGTGTTAAGTTGACATAAAACTAGCCAGCACACCCACCGTGGCCAATTTGTGCTGCCCATATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp ACCTATGAGTATATGGGCAGCACAAATTGGCCACGGTaGGTGTGCTGGCTAGTTTTATGTCAACTTAACACA +
Preference number: 3 (lower is better)
Translates to: TYEYMGSTNWPR*VCWLVLCQLNT
Trigger: TGTGTTAAGTTGACATAAAACTAGCCAGCACACCCACCGTGGCCAATTTGTGCTGCCCATATACTCATAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAACCTTCCCCAAGGAATaGTGGGTTGCAGATCTGAGG +
Preference number: 3 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKTFPKE*WVADLR
Trigger: CCTCAGATCTGCAACCCACAATTCCTTGGGGAAGGT...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACAAATGAGAAGGATTTaGGCTTGTCCTGCTTCTGAT +
Preference number: 3 (lower is better)
Translates to: DVWILPTSFRERRDKMSVQMRRI*ACPASD
Trigger: ATCAGAAGCAGGACAAGCCAAAATCCTTCTCATTTG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp TTCGTGAGAGCATGGTCAAAGAATCGACTTGGGTTCTaGTTCAGGTTGTTTGAAACCAAGTCATCAGCTTCC +
Preference number: 3 (lower is better)
Translates to: FVRAWSKNRLGF*FRLFETKSSAS
Trigger: GGAAGCTGATGACTTGGTTTCAAACAACCTGAATCAGAACCCAAGTCGATTCTTTGACCATGCTCTCACGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp CAGTACAGTATCAAAAGAGCCACTGACCAGATGAAATaGTTACGCCACAAGCCCATCCTATACACTTTACAC +
Preference number: 3 (lower is better)
Translates to: QYSIKRATDQMK*LRHKPILYTLH
Trigger: GTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTCAGTGGCTCTTTTGATACTGTACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp TATATGGGCAGCACAAATTGGCCACGGTGGGTGTGCTaGCTAGTTTTATGTCAACTTAACACAAGCTATAGT +
Preference number: 3 (lower is better)
Translates to: YMGSTNWPRWVC*LVLCQLNTSYS
Trigger: ACTATAGCTTGTGTTAAGTTGACATAAAACTAGCCAGCACACCCACCGTGGCCAATTTGTGCTGCCCATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAACTTTATTCCCCAACTaGCTTTTGGGCATTGTTAAC +
Preference number: 3 (lower is better)
Translates to: DQMKCLRHKPILYTLHETTLFPN*LLGIVN
Trigger: GTTAACAATGCCCAAAAGCAAGTTGGGGAATAAAGT...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAACCAAGGGTTTTCTTTaGGCTGGTGTGTGGACAGGA +
Preference number: 3 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKTKGFL*AGVWTG
Trigger: TCCTGTCCACACACCAGCCAAAAGAAAACCCTTGGT...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACATCTGATTCAGGTTGTTaGAAACCAAGTCATCAGCTT +
Preference number: 3 (lower is better)
Translates to: DQMKCLRHKPILYTLHETSDSGC*KPSHQL
Trigger: AAGCTGATGACTTGGTTTCAAACAACCTGAATCAGA...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAAGTGAGGCCTACCCTTaGCAACACAGTAAATTTAAA +
Preference number: 3 (lower is better)
Translates to: DVWILPTSFRERRDKMSVSEAYP*QHSKFK
Trigger: TTTAAATTTACTGTGTTGCAAAGGGTAGGCCTCACT...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp ATCAATGAAAAGTACAATTCGCTCTTCATAGCAAGCTaGGGAGGTGCAGCCTTTAGTTTTGGTATGGATACG +
Preference number: 3 (lower is better)
Translates to: INEKYNSLFIAS*GGAAFSFGMDT
Trigger: CGTATCCATACCAAAACTAAAGGCTGCACCTCCGCAGCTTGCTATGAAGAGCGAATTGTACTTTTCATTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp CTAAGCTGGAATCTCGAGCCAAAGGCACTTTCAAGCTaGAGTGCAGAAGATTCACAAATAGCTAAGTATTTG +
Preference number: 3 (lower is better)
Translates to: LSWNLEPKALSS*SAEDSQIAKYL
Trigger: CAAATACTTAGCTATTTGTGAATCTTCTGCACTCCAGCTTGAAAGTGCCTTTGGCTCGAGATTCCAGCTTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp TACAAATTGTCGTTATTATGGTGGCACTTTCTAAGCTaGAATCTCGAGCCAAAGGCACTTTCAAGCTGGAGT +
Preference number: 3 (lower is better)
Translates to: YKLSLLWWHFLS*NLEPKALSSWS
Trigger: ACTCCAGCTTGAAAGTGCCTTTGGCTCGAGATTCCAGCTTAGAAAGTGCCACCATAATAACGACAATTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp AGGTTTTACTCTAAGCTGACACACACTTTAAAGAGTTaGCTGAGGGCTAGAATGTCCTTGAAAATGCCGAGT +
Preference number: 3 (lower is better)
Translates to: RFYSKLTHTLKS*LRARMSLKMPS
Trigger: ACTCGGCATTTTCAAGGACATTCTAGCCCTCAGCCAACTCTTTAAAGTGTGTGTCAGCTTAGAGTAAAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp AAACTCATAGACAGGTTTTCTAACATGATGGATGTGTaGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGAC +
Preference number: 3 (lower is better)
Translates to: KLIDRFSNMMDV*ILPTSFRERRD
Trigger: GTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATCCATCATGTTAGAAAACCTGTCTATGAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTATGTTCTGAAGAAGTTTaGGGTGGATTTTTATGTCTC +
Preference number: 3 (lower is better)
Translates to: DVWILPTSFRERRDKMSVCSEEV*GGFLCL
Trigger: GAGACATAAAAATCCACCCAAAACTTCTTCAGAACA...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp ACTCTGGGCATCCCAGGACATGTTCTGAAGAAGTTTTaGGTGGATTTTTATGTCTCTTTCATTGGAAAGATG +
Preference number: 3 (lower is better)
Translates to: TLGIPGHVLKKF*VDFYVSFIGKM
Trigger: CATCTTTCCAATGAAAGAGACATAAAAATCCACCCAAAACTTCTTCAGAACATGTCCTGGGATGCCCAGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CCA 72 bp GTGAGGACACCAACACACAGGTATTCTACCCTTCCATaGGACGCCAGAGCATATACAAAATTATACAAATTA +
Preference number: 3 (lower is better)
Translates to: VRTPTHRYSTLP*DARAYTKLYKL
Trigger: TAATTTGTATAATTTTGTATATGCTCTGGCGTCCCATGGAAGGGTAGAATACCTGTGTGTTGGTGTCCTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp ACAAGCTATAGTCATCTCAGAAAAGGGAACCTCAATTaGGAAAACATCTCCATAAGAAATGGCTGTAGGGCA +
Preference number: 3 (lower is better)
Translates to: TSYSHLRKGNLN*ENISIRNGCRA
Trigger: TGCCCTACAGCCATTTCTTATGGAGATGTTTTCTCAATTGAGGTTCCCTTTTCTGAGATGACTATAGCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp GAGAGAGAGAGAATGAATATATGTGTAAAGTGCCACTaGGGCTTATGGAAAGATGCCCTTAGAGAAAATACA +
Preference number: 3 (lower is better)
Translates to: ERERMNICVKCH*GLWKDALRENT
Trigger: TGTATTTTCTCTAAGGGCATCTTTCCATAAGCCTCAGTGGCACTTTACACATATATTCATTCTCTCTCTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR TCA 72 bp TGTGTGTGTGTGCACATTTGTATGTGCTCACACATGTaGGTGTGTGTAATGAAACTGTTACTTTCCTCTTAT +
Preference number: 3 (lower is better)
Translates to: CVCVHICMCSHM*VCVMKLLLSSY
Trigger: ATAAGAGGAAAGTAACAGTTTCATTACACACACTCACATGTGTGAGCACATACAAATGTGCACACACACACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR GCA 72 bp GGGGGAATACACAAGAGCAAACCACTAACTCTAACCTaGACTGAGAAATTATCCTTTCCATTTGATAGTTAT +
Preference number: 3 (lower is better)
Translates to: GGIHKSKPLTLT*TEKLSFPFDSY
Trigger: ATAACTATCAAATGGAAAGGATAATTTCTCAGTGCAGGTTAGAGTTAGTGGTTTGCTCTTGTGTATTCCCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR-3UTR CAA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATGTTCTGAAGAAGTTTaGGGTGGATTTTTATGTCTC +
Preference number: 3 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKCSEEV*GGFLCL
Trigger: GAGACATAAAAATCCACCCAAAACTTCTTCAGAACA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGCGGGAAGGTGGGGCGTaGAATCCCAGGCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMREGGA*NPRQPQ
Trigger: CTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCCG...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp AGCCATGGTGTCTGCCCACTGGCCGGGATTCGGTGCTaGCGCATAAGTTCCTTCCCAGGGATGCAGAGCCGG +
Preference number: 4 (lower is better)
Translates to: SHGVCPLAGIRC*RISSFPGMQSR
Trigger: CCGGCTCTGCATCCCTGGGAAGGAACTTATGCGCAAGCACCGAATCCCGGCCAGTGGGCAGACACCATGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp GGGCAGCCGACACACCACCCTGACTCTGTGACATCTTaGCCAGCCCACTGCCAACCACTATCCTCTAGCTGG +
Preference number: 4 (lower is better)
Translates to: GQPTHHPDSVTS*PAHCQPLSSSW
Trigger: CCAGCTAGAGGATAGTGGTTGGCAGTGGGCTGGCAAAGATGTCACAGAGTCAGGGTGGTGTGTCGGCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp AAGTTCCTTCCCAGGGATGCAGAGCCGGGTGATGAGTaGGTGGACATGCCGGGAGAGGCGGCATACACAGAC +
Preference number: 4 (lower is better)
Translates to: KFLPRDAEPGDE*VDMPGEAAYTD
Trigger: GTCTGTGTATGCCGCCTCTCCCGGCATGTCCACCAACTCATCACCCGGCTCTGCATCCCTGGGAAGGAACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGGCGAAGCTTGGTTGTaGCAATGGATCGGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMGEAWL*QWIGPA
Trigger: GGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCC...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGGGCGAAGCTTGGTTGTaGCAATGGATCGGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKGEAWL*QWIGPA
Trigger: GGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCC...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTCGGGAAGGTGGGGCGTaGAATCCCAGGCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESREGGA*NPRQPQ
Trigger: CTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCCG...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCGGGAAGGTGGGGCGTaGAATCCCAGGCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCREGGA*NPRQPQ
Trigger: CTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCCG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCCGGGAAGGTGGGGCGTaGAATCCCAGGCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAREGGA*NPRQPQ
Trigger: CTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCCG...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCGGGAAGGTGGGGCGTaGAATCCCAGGCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFREGGA*NPRQPQ
Trigger: CTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCCG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGCTTGGTTGTGCCAATaGATCGGCCCTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMAWLCQ*IGPARQ
Trigger: CTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGC...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGGGGCTTGACGTCTTGTaGGGATCCTGGCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKGLDVL*GSWLSC
Trigger: ACAGGACAGCCAGGATCCTCACAAGACGTCAAGCCC...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGTCTGGGCTGATGACATaGCAGCCATGTGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMSGLMT*QPCAAG
Trigger: CCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGA...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGTAGCCGAGACGATCTaGGCTGATGACATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMVAETI*ADDMAA
Trigger: GGCTGCCATGTCATCAGCCCAGATCGTCTCGGCTAC...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTAGCCCCAGCTTGTTGTaGATGGCAGTAGCCGAGACG +
Preference number: 4 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSSPSLL*MAVAET
Trigger: CGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCT...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGAGCCCCAGCTTGTTGTaGATGGCAGTAGCCGAGACG +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMSPSLL*MAVAET
Trigger: CGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCT...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGGGGGCTGTGACTGCTaGCTGGATGGGGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESGGCDC*LDGVGL
Trigger: CAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCGGGGGCTGTGACTGCTaGCTGGATGGGGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAGGCDC*LDGVGL
Trigger: CAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCC...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp TTGGCAGGCAGACTCACAGCAGGCAGGGACCACACGTaGCTCGGTGCTCTCATGAATACAAGCCTGCGGTTG +
Preference number: 4 (lower is better)
Translates to: LAGRLTAGRDHT*LGALMNTSLRL
Trigger: CAACCGCAGGCTTGTATTCATGAGAGCACCGAGCAACGTGTGGTCCCTGCCTGCTGTGAGTCTGCCTGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAGGAAGAAGGCGTTTTaGGGGCCCTTTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGRKKAF*GPFPNS
Trigger: GCTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCGGCGAAGCTTGGTTGTaGCAATGGATCGGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSGEAWL*QWIGPA
Trigger: GGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCC...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGGGGGCTGTGACTGCTaGCTGGATGGGGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIGGCDC*LDGVGL
Trigger: CAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCGGGCTTGACGTCTTGTaGGGATCCTGGCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSGLDVL*GSWLSC
Trigger: ACAGGACAGCCAGGATCCTCACAAGACGTCAAGCCC...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGAGTCCGCCCAGAATTTaGCGAGGAAGAAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGSPPRI*RGRRRF
Trigger: AAAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACT...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCTCTGGGCTGATGACATaGCAGCCATGTGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSSGLMT*QPCAAG
Trigger: CCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGA...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTCTGGGCTGATGACATaGCAGCCATGTGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: RKSCRKEMVAVQERPLTESGLMT*QPCAAG
Trigger: CCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCGTAGCCGAGACGATCTaGGCTGATGACATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSVAETI*ADDMAA
Trigger: GGCTGCCATGTCATCAGCCCAGATCGTCTCGGCTAC...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGTAGCCGAGACGATCTaGGCTGATGACATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: MTGLVGPDPMVVNELGARVAETI*ADDMAA
Trigger: GGCTGCCATGTCATCAGCCCAGATCGTCTCGGCTAC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACGGGAAGGTGGGGCGTaGAATCCCAGGCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: DVWILPTSFRERRDKMSVREGGA*NPRQPQ
Trigger: CTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCCG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTAGGGGGCTGTGACTGCTaGCTGGATGGGGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLGGCDC*LDGVGL
Trigger: CAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCC...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGCTTGGTTGTGCCAATaGATCGGCCCTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESAWLCQ*IGPARQ
Trigger: CTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCGCTTGGTTGTGCCAATaGATCGGCCCTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAAWLCQ*IGPARQ
Trigger: CTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGC...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGGCCCCGGCGTCGTCTTaGATATTGCAGTTTAAGTCC +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKAPASS*ILQFKS
Trigger: GGACTTAAACTGCAATATCCAAGACGACGCCGGGGC...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGCCCCGGCGTCGTCTTaGATATTGCAGTTTAAGTCC +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMAPASS*ILQFKS
Trigger: GGACTTAAACTGCAATATCCAAGACGACGCCGGGGC...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGGGGCTTGACGTCTTGTaGGGATCCTGGCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRGLDVL*GSWLSC
Trigger: ACAGGACAGCCAGGATCCTCACAAGACGTCAAGCCC...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGGGCTTGACGTCTTGTaGGGATCCTGGCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESGLDVL*GSWLSC
Trigger: ACAGGACAGCCAGGATCCTCACAAGACGTCAAGCCC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGAGTCCGCCCAGAATTTaGCGAGGAAGAAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMSPPRI*RGRRRF
Trigger: AAAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACT...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGGTCAATCGGCTTATCTaGCGAGTCGCTCATCCTTTC +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKVNRLI*RVAHPF
Trigger: GAAAGGATGAGCGACTCGGCAGATAAGCCGATTGAC...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCGAAGCTTGGTTGTaGCAATGGATCGGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAGEAWL*QWIGPA
Trigger: GGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCC...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGTTGGCATGCCCGATGTaGACGAAGAGGTGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMLACPM*TKRCLL
Trigger: CAACAAACACCTCTTCGTGCACATCGGGCATGCCAA...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTTCTGGGCTGATGACATaGCAGCCATGTGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESSGLMT*QPCAAG
Trigger: CCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGA...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTTCTGGGCTGATGACATaGCAGCCATGTGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFSGLMT*QPCAAG
Trigger: CCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGA...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTGTAGCCGAGACGATCTaGGCTGATGACATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCVAETI*ADDMAA
Trigger: GGCTGCCATGTCATCAGCCCAGATCGTCTCGGCTAC...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTAGCCCCAGCTTGTTGTaGATGGCAGTAGCCGAGACG +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCSPSLL*MAVAET
Trigger: CGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCT...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGGGGGCTGTGACTGCTaGCTGGATGGGGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: DQMKCLRHKPILYTLHETGGCDC*LDGVGL
Trigger: CAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGCTTGGTTGTGCCAATaGATCGGCCCTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIAWLCQ*IGPARQ
Trigger: CTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCPPGEA*LCQWIG
Trigger: GCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTCCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFPPGEA*LCQWIG
Trigger: GCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGG...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGCACTGTAAGAATGGTTaGCATGCCCGATGTGCACGA +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKHCKNG*HARCAR
Trigger: TCGTGCACATCGGGCATGCCAACCATTCTTACAGTG...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGGAAGAAGGCGTTTTaGGGGCCCTTTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSRKKAF*GPFPNS
Trigger: GCTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCT...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCACGAGATTTCCTTCTaGCAAGAACCTGAATGTGAC +
Preference number: 4 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGHEISF*QEPECD
Trigger: GTCACATTCAGGTTCTTGCCAGAAGGAAATCTCGTG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATATCTGGGCTGATGACATaGCAGCCATGTGCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSISGLMT*QPCAAG
Trigger: CCCTGCAGCACATGGCTGCCATGTCATCAGCCCAGA...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGTAGCCGAGACGATCTaGGCTGATGACATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIVAETI*ADDMAA
Trigger: GGCTGCCATGTCATCAGCCCAGATCGTCTCGGCTAC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAAGCCCCAGCTTGTTGTaGATGGCAGTAGCCGAGACG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSISPSLL*MAVAET
Trigger: CGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCT...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGCTTCGTCTGATAAGATaGTTTTTCTCCTCCCACACG +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKLRLIR*FFSSHT
Trigger: CGTGTGGGAGGAGAAAAATCATCTTATCAGACGAAG...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTCTTCGTCTGATAAGATaGTTTTTCTCCTCCCACACG +
Preference number: 4 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSLRLIR*FFSSHT
Trigger: CGTGTGGGAGGAGAAAAATCATCTTATCAGACGAAG...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGAGGAAGAAGGCGTTTTaGGGGCCCTTTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRRKKAF*GPFPNS
Trigger: GCTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTAGGAAGAAGGCGTTTTaGGGGCCCTTTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCRKKAF*GPFPNS
Trigger: GCTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCT...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGTCCGCCCAGAATTTaGCGAGGAAGAAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSSPPRI*RGRRRF
Trigger: AAAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACT...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGTCAATCGGCTTATCTaGCGAGTCGCTCATCCTTTC +
Preference number: 4 (lower is better)
Translates to: MTGLVGPDPMVVNELGARVNRLI*RVAHPF
Trigger: GAAAGGATGAGCGACTCGGCAGATAAGCCGATTGAC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAG +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESESGSL*CSRKAE
Trigger: CTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAG +
Preference number: 4 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAESGSL*CSRKAE
Trigger: CTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTC...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGCACGAGATTTCCTTCTaGCAAGAACCTGAATGTGAC +
Preference number: 4 (lower is better)
Translates to: QAGQEACDSDILGSRDTKHEISF*QEPECD
Trigger: GTCACATTCAGGTTCTTGCCAGAAGGAAATCTCGTG...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTAGTAGCCGAGACGATCTaGGCTGATGACATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLVAETI*ADDMAA
Trigger: GGCTGCCATGTCATCAGCCCAGATCGTCTCGGCTAC...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGCTTGGTTGTGCCAATaGATCGGCCCTGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: DVWILPTSFRERRDKMSVAWLCQ*IGPARQ
Trigger: CTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTACCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLPPGEA*LCQWIG
Trigger: GCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGG...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACACTGTAAGAATGGTTaGCATGCCCGATGTGCACGA +
Preference number: 4 (lower is better)
Translates to: MTGLVGPDPMVVNELGARHCKNG*HARCAR
Trigger: TCGTGCACATCGGGCATGCCAACCATTCTTACAGTG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGCCCCGGCGTCGTCTTaGATATTGCAGTTTAAGTCC +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESAPASS*ILQFKS
Trigger: GGACTTAAACTGCAATATCCAAGACGACGCCGGGGC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTGCCCCGGCGTCGTCTTaGATATTGCAGTTTAAGTCC +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCAPASS*ILQFKS
Trigger: GGACTTAAACTGCAATATCCAAGACGACGCCGGGGC...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGGGCTTGACGTCTTGTaGGGATCCTGGCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: DQMKCLRHKPILYTLHETGLDVL*GSWLSC
Trigger: ACAGGACAGCCAGGATCCTCACAAGACGTCAAGCCC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTAGGAAGAAGGCGTTTTaGGGGCCCTTTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRARKKAF*GPFPNS
Trigger: GCTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGAGTCCGCCCAGAATTTaGCGAGGAAGAAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRSPPRI*RGRRRF
Trigger: AAAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACT...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCTTGTCCTTGGCAGTCTaGTCCATGCTTGTTACCTTC +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSLSLAV*SMLVTF
Trigger: GAAGGTAACAAGCATGGATCAGACTGCCAAGGACAA...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGTTGTCCTTGGCAGTCTaGTCCATGCTTGTTACCTTC +
Preference number: 4 (lower is better)
Translates to: RKSCRKEMVAVQERPLTELSLAV*SMLVTF
Trigger: GAAGGTAACAAGCATGGATCAGACTGCCAAGGACAA...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059768.18
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTCAATCGGCTTATCTaGCGAGTCGCTCATCCTTTC +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESVNRLI*RVAHPF
Trigger: GAAAGGATGAGCGACTCGGCAGATAAGCCGATTGAC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTGTCAATCGGCTTATCTaGCGAGTCGCTCATCCTTTC +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCVNRLI*RVAHPF
Trigger: GAAAGGATGAGCGACTCGGCAGATAAGCCGATTGAC...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIESGSL*CSRKAE
Trigger: CTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGTTGGCATGCCCGATGTaGACGAAGAGGTGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRLACPM*TKRCLL
Trigger: CAACAAACACCTCTTCGTGCACATCGGGCATGCCAA...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTTTGGCATGCCCGATGTaGACGAAGAGGTGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCLACPM*TKRCLL
Trigger: CAACAAACACCTCTTCGTGCACATCGGGCATGCCAA...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GAACCAGTGCCCCATTGGCTTTACATAAGGGAGGCACATTGCAAATGGAAACATAGCCCCAGCTTGTTGTaGATGGCAGTAGCCGAGACG +
Preference number: 4 (lower is better)
Translates to: EPVPHWLYIREAHCKWKHSPSLL*MAVAET
Trigger: CGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCT...ATGTTTCCATTTGCAATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: DQMKCLRHKPILYTLHETPPGEA*LCQWIG
Trigger: GCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GAACCAGTGCCCCATTGGCTTTACATAAGGGAGGCACATTGCAAATGGAAACATCCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGC +
Preference number: 4 (lower is better)
Translates to: EPVPHWLYIREAHCKWKHPPGEA*LCQWIG
Trigger: GCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGG...ATGTTTCCATTTGCAATGTGCCTCCCTTATGTAAAGCCAATGGGGCACTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCACTGTAAGAATGGTTaGCATGCCCGATGTGCACGA +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCHCKNG*HARCAR
Trigger: TCGTGCACATCGGGCATGCCAACCATTCTTACAGTG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTCACTGTAAGAATGGTTaGCATGCCCGATGTGCACGA +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESHCKNG*HARCAR
Trigger: TCGTGCACATCGGGCATGCCAACCATTCTTACAGTG...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGCACTGTAAGAATGGTTaGCATGCCCGATGTGCACGA +
Preference number: 4 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRHCKNG*HARCAR
Trigger: TCGTGCACATCGGGCATGCCAACCATTCTTACAGTG...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGCCCCGGCGTCGTCTTaGATATTGCAGTTTAAGTCC +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIAPASS*ILQFKS
Trigger: GGACTTAAACTGCAATATCCAAGACGACGCCGGGGC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGCATATATTCACACATTaGCGAGCGGTTTATTCGGTA +
Preference number: 4 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGHIFTH*RAVYSV
Trigger: TACCGAATAAACCGCTCGCCAATGTGTGAATATATG...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTAGTCCGCCCAGAATTTaGCGAGGAAGAAGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRASPPRI*RGRRRF
Trigger: AAAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGACCTTAATGGCGGCTTaGATTTCTCGAACTTTCTTT +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMTLMAA*ISRTFF
Trigger: AAAGAAAGTTCGAGAAATTCAAGCCGCCATTAAGGT...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCTTGTCCTTGGCAGTCTaGTCCATGCTTGTTACCTTC +
Preference number: 4 (lower is better)
Translates to: TKPDEPSACSVDDKFLPALSLAV*SMLVTF
Trigger: GAAGGTAACAAGCATGGATCAGACTGCCAAGGACAA...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGTCAATCGGCTTATCTaGCGAGTCGCTCATCCTTTC +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIVNRLI*RVAHPF
Trigger: GAAAGGATGAGCGACTCGGCAGATAAGCCGATTGAC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTAGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAG +
Preference number: 4 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLESGSL*CSRKAE
Trigger: CTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTC...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATATTGGCATGCCCGATGTaGACGAAGAGGTGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSILACPM*TKRCLL
Trigger: CAACAAACACCTCTTCGTGCACATCGGGCATGCCAA...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTTTGGCATGCCCGATGTaGACGAAGAGGTGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRALACPM*TKRCLL
Trigger: CAACAAACACCTCTTCGTGCACATCGGGCATGCCAA...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAAACTCTCATACTGACTaGTCACACCATAAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: MTGLVGPDPMVVNELGARNSHTD*SHHKRP
Trigger: GGGCCTTTTATGGTGTGAGCAGTCAGTATGAGAGTT...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAACTCTCATACTGACTaGTCACACCATAAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSNSHTD*SHHKRP
Trigger: GGGCCTTTTATGGTGTGAGCAGTCAGTATGAGAGTT...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGACACGAGATTTCCTTCTaGCAAGAACCTGAATGTGAC +
Preference number: 4 (lower is better)
Translates to: MTGLVGPDPMVVNELGARHEISF*QEPECD
Trigger: GTCACATTCAGGTTCTTGCCAGAAGGAAATCTCGTG...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCCACGAGATTTCCTTCTaGCAAGAACCTGAATGTGAC +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSHEISF*QEPECD
Trigger: GTCACATTCAGGTTCTTGCCAGAAGGAAATCTCGTG...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAAGGGGGCTGTGACTGCTaGCTGGATGGGGTAGGCCTG +
Preference number: 4 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKGGCDC*LDGVGL
Trigger: CAGGCCTACCCCATCCAGCCAGCAGTCACAGCCCCC...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGCATATATTCACACATTaGCGAGCGGTTTATTCGGTA +
Preference number: 4 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMHIFTH*RAVYSV
Trigger: TACCGAATAAACCGCTCGCCAATGTGTGAATATATG...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCTTCGTCTGATAAGATaGTTTTTCTCCTCCCACACG +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCLRLIR*FFSSHT
Trigger: CGTGTGGGAGGAGAAAAATCATCTTATCAGACGAAG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATAGCTAAGACCTGTATATaGCTAGACACCTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIAKTCI*LDTCFL
Trigger: CAGGAAGCAGGTGTCTAGTCATATACAGGTCTTAGC...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAG +
Preference number: 4 (lower is better)
Translates to: DVWILPTSFRERRDKMSVESGSL*CSRKAE
Trigger: CTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCAACTCTCATACTGACTaGTCACACCATAAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: TKPDEPSACSVDDKFLPANSHTD*SHHKRP
Trigger: GGGCCTTTTATGGTGTGAGCAGTCAGTATGAGAGTT...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTAACTCTCATACTGACTaGTCACACCATAAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESNSHTD*SHHKRP
Trigger: GGGCCTTTTATGGTGTGAGCAGTCAGTATGAGAGTT...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCACGAGATTTCCTTCTaGCAAGAACCTGAATGTGAC +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCHEISF*QEPECD
Trigger: GTCACATTCAGGTTCTTGCCAGAAGGAAATCTCGTG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp ACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTaGAGGGCTGGCTTAGAAACAGGGAACCTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: TDKGEKLRVAIP*RAGLETGNLGC
Trigger: ACAGCCTAGGTTCCCTGTTTCTAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp AGGACATTGCTGCTGGGATGTATGGTAAATAGAAATTaGACTCAGAGCCTGCGGCTGGAGAACTGTCCTCTG +
Preference number: 4 (lower is better)
Translates to: RTLLLGCMVNRN*TQSLRLENCPL
Trigger: CAGAGGACAGTTCTCCAGCCGCAGGCTCTGAGTCAAATTTCTATTTACCATACATCCCAGCAGCAATGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCCATATATTCACACATTaGCGAGCGGTTTATTCGGTA +
Preference number: 4 (lower is better)
Translates to: TIYPQAGQEACDSDILGSHIFTH*RAVYSV
Trigger: TACCGAATAAACCGCTCGCCAATGTGTGAATATATG...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGCTAAGACCTGTATATaGCTAGACACCTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: DVWILPTSFRERRDKMSVAKTCI*LDTCFL
Trigger: CAGGAAGCAGGTGTCTAGTCATATACAGGTCTTAGC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCATATATTCACACATTaGCGAGCGGTTTATTCGGTA +
Preference number: 4 (lower is better)
Translates to: APCAVRFTVSRSIMESVCHIFTH*RAVYSV
Trigger: TACCGAATAAACCGCTCGCCAATGTGTGAATATATG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACTTCGTCTGATAAGATaGTTTTTCTCCTCCCACACG +
Preference number: 4 (lower is better)
Translates to: DQMKCLRHKPILYTLHETLRLIR*FFSSHT
Trigger: CGTGTGGGAGGAGAAAAATCATCTTATCAGACGAAG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTACTTCGTCTGATAAGATaGTTTTTCTCCTCCCACACG +
Preference number: 4 (lower is better)
Translates to: DVWILPTSFRERRDKMSVLRLIR*FFSSHT
Trigger: CGTGTGGGAGGAGAAAAATCATCTTATCAGACGAAG...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTACCTTAATGGCGGCTTaGATTTCTCGAACTTTCTTT +
Preference number: 4 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRATLMAA*ISRTFF
Trigger: AAAGAAAGTTCGAGAAATTCAAGCCGCCATTAAGGT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR GCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATTGGCATGCCCGATGTaGACGAAGAGGTGTTTGTTG +
Preference number: 4 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKLACPM*TKRCLL
Trigger: CAACAAACACCTCTTCGTGCACATCGGGCATGCCAA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACACTGTAAGAATGGTTaGCATGCCCGATGTGCACGA +
Preference number: 4 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKHCKNG*HARCAR
Trigger: TCGTGCACATCGGGCATGCCAACCATTCTTACAGTG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CCA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACATATATTCACACATTaGCGAGCGGTTTATTCGGTA +
Preference number: 4 (lower is better)
Translates to: DQMKCLRHKPILYTLHETHIFTH*RAVYSV
Trigger: TACCGAATAAACCGCTCGCCAATGTGTGAATATATG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp GGTCAAAGAATCGACTTGGGTTCTGATTCAGGTTGTTaGAAACCAAGTCATCAGCTTCCTATAGAGCTGGAT +
Preference number: 4 (lower is better)
Translates to: GQRIDLGSDSGC*KPSHQLPIELD
Trigger: ATCCAGCTCTATAGGAAGCTGATGACTTGGTTTCAAACAACCTGAATCAGAACCCAAGTCGATTCTTTGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR TCA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATTGTCCTTGGCAGTCTaGTCCATGCTTGTTACCTTC +
Preference number: 4 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKLSLAV*SMLVTF
Trigger: GAAGGTAACAAGCATGGATCAGACTGCCAAGGACAA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000059768.18
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp GACTCTGGGCATCCCAGGACATGTTCTGAAGAAGTTTaGGGTGGATTTTTATGTCTCTTTCATTGGAAAGAT +
Preference number: 4 (lower is better)
Translates to: DSGHPRTCSEEV*GGFLCLFHWKD
Trigger: ATCTTTCCAATGAAAGAGACATAAAAATCCACCCAAAACTTCTTCAGAACATGTCCTGGGATGCCCAGAGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp CATATTCCTAACAGTTGTGTGTGTGTGTGTGCACATTaGTATGTGCTCACACATGTGAGTGTGTGTAATGAA +
Preference number: 4 (lower is better)
Translates to: HIPNSCVCVCAH*YVLTHVSVCNE
Trigger: TTCATTACACACACTCACATGTGTGAGCACATACAAATGTGCACACACACACACACAACTGTTAGGAATATG
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
3UTR CAA 72 bp CTGCACACACAAGACTATAACGTTGTAAGCTTAGACTaGTCTCAGTATTACCTACTTATTGCAAAAAGAGCC +
Preference number: 4 (lower is better)
Translates to: LHTQDYNVVSLD*SQYYLLIAKRA
Trigger: GGCTCTTTTTGCAATAAGTAGGTAATACTGAGACAAGTCTAAGCTTACAACGTTATAGTCTTGTGTGTGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGGGCAGCCCCAGCTTGTaGTGGATGGCAGTAGCCGAG +
Preference number: 5 (lower is better)
Translates to: QAGQEACDSDILGSRDTKGSPSL*WMAVAE
Trigger: CTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCC...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGGCAGCCCCAGCTTGTaGTGGATGGCAGTAGCCGAG +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMGSPSL*WMAVAE
Trigger: CTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCC...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGCCAGGCAGCCCCAGCTaGTTGTGGATGGCAGTAGCC +
Preference number: 5 (lower is better)
Translates to: QAGQEACDSDILGSRDTKPGSPS*LWMAVA
Trigger: GGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGG...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS CCA 90 bp CTCTCTGCTGTTCAAGGAAAGCGGAGAATTCCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGCCCTGCCAGGCAGGAACTGAGGGGG +
Preference number: 5 (lower is better)
Translates to: LSAVQGKRRIPPGEA*LCQWIGPARQELRG
Trigger: CCCCCTCAGTTCCTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTGAACAGCAGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGCCAGGCGAAGCTTGGTaGTGCCAATGGATCGGCCCT +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMPGEAW*CQWIGP
Trigger: AGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGG...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTCCAGGCGAAGCTTGGTaGTGCCAATGGATCGGCCCT +
Preference number: 5 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSPGEAW*CQWIGP
Trigger: AGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGG...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGTCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGG +
Preference number: 5 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGSTRRS*VVPMDR
Trigger: CCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGA...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGAGGCAGCCCCAGCTTGTaGTGGATGGCAGTAGCCGAG +
Preference number: 5 (lower is better)
Translates to: MTGLVGPDPMVVNELGARGSPSL*WMAVAE
Trigger: CTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCC...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCCCAGGCAGCCCCAGCTaGTTGTGGATGGCAGTAGCC +
Preference number: 5 (lower is better)
Translates to: TIYPQAGQEACDSDILGSPGSPS*LWMAVA
Trigger: GGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGG...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGGCAGCCCCAGCTTGTaGTGGATGGCAGTAGCCGAG +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESGSPSL*WMAVAE
Trigger: CTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCC...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCGGCAGCCCCAGCTTGTaGTGGATGGCAGTAGCCGAG +
Preference number: 5 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAGSPSL*WMAVAE
Trigger: CTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCC...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTCCAGGCAGCCCCAGCTaGTTGTGGATGGCAGTAGCC +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESPGSPS*LWMAVA
Trigger: GGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGG...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTCCAGGCAGCCCCAGCTaGTTGTGGATGGCAGTAGCC +
Preference number: 5 (lower is better)
Translates to: APCAVRFTVSRSIMESVCPGSPS*LWMAVA
Trigger: GGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGG...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCCCAGGCGAAGCTTGGTaGTGCCAATGGATCGGCCCT +
Preference number: 5 (lower is better)
Translates to: TIYPQAGQEACDSDILGSPGEAW*CQWIGP
Trigger: AGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGG...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTCCAGGCAGCCCCAGCTaGTTGTGGATGGCAGTAGCC +
Preference number: 5 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAPGSPS*LWMAVA
Trigger: GGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGG...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGCCAGGCGAAGCTTGGTaGTGCCAATGGATCGGCCCT +
Preference number: 5 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRPGEAW*CQWIGP
Trigger: AGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGG...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGG +
Preference number: 5 (lower is better)
Translates to: MTGLVGPDPMVVNELGARSTRRS*VVPMDR
Trigger: CCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGGAAGAAGGCGTTTaGAGGGCCCTTTCCAAACAG +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMEEEGV*RALSKQ
Trigger: CTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCTC...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTGAGGAAGAAGGCGTTTaGAGGGCCCTTTCCAAACAG +
Preference number: 5 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSEEEGV*RALSKQ
Trigger: CTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCTC...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTTCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGG +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESSTRRS*VVPMDR
Trigger: CCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGA...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCTCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGG +
Preference number: 5 (lower is better)
Translates to: TKPDEPSACSVDDKFLPASTRRS*VVPMDR
Trigger: CCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGA...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GTTCCCAGGCAGCCTGTCACACTGACACCCTGCGATGTGACTTCTCTAAGATTTTCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGG +
Preference number: 5 (lower is better)
Translates to: VPRQPVTLTPCDVTSLRFSTRRS*VVPMDR
Trigger: CCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGA...AAATCTTAGAGAAGTCACATCGCAGGGTGTCAGTGTGACAGGCTGCCTGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGTGCACGAAGAGGTGTTaGTTGTACGAGTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMCTKRC*LYESGS
Trigger: AGACCCAGACTCGTACAACAAACACCTCTTCGTGCA...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGTGCACGAAGAGGTGTTaGTTGTACGAGTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: QAGQEACDSDILGSRDTKCTKRC*LYESGS
Trigger: AGACCCAGACTCGTACAACAAACACCTCTTCGTGCA...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp CAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAGAGACACCAAGAAGTCCGCCCAGAATTaGACGAGGAAGAAGGCGTTT +
Preference number: 5 (lower is better)
Translates to: QAGQEACDSDILGSRDTKKSAQN*TRKKAF
Trigger: AAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACTT...CTTGGTGTCTCTGCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGCCAAAGGAGCACACTTaGGTGGAACAGGTAACTGTC +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMPKEHT*VEQVTV
Trigger: GACAGTTACCTGTTCCACCAAAGTGTGCTCCTTTGG...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS GCA 90 bp ACTGACTGCTCACACCATAAAAGGCCCCGGCGTCGTCTTGGATATTaGAGTTTAAGTCCGCCGAGTCTGGGTCTCTCTGCTGTTCAAGGA +
Preference number: 5 (lower is better)
Translates to: TDCSHHKRPRRRLGY*SLSPPSLGLSAVQG
Trigger: TCCTTGAACAGCAGAGAGACCCAGACTCGGCGGACTTAAACTGCAATATCCAAGACGACGCCGGGGCCTTTTATGGTGTGAGCAGTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171197.8
CDS-3UTR CAA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACACCAGGCGAAGCTTGGTaGTGCCAATGGATCGGCCCT +
Preference number: 5 (lower is better)
Translates to: DQMKCLRHKPILYTLHETPGEAW*CQWIGP
Trigger: AGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGG...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCTGCACGAAGAGGTGTTaGTTGTACGAGTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: TIYPQAGQEACDSDILGSCTKRC*LYESGS
Trigger: AGACCCAGACTCGTACAACAAACACCTCTTCGTGCA...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCAAGTCCGCCCAGAATTaGACGAGGAAGAAGGCGTTT +
Preference number: 5 (lower is better)
Translates to: TIYPQAGQEACDSDILGSKSAQN*TRKKAF
Trigger: AAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACTT...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp TCACGTGGGCAATTTCAGAGCCCGGAGCGGCTATTCCTTAGACACCAGGGAGGGTCATATATTCACACATaGGCGAGCGGTTTATTCGGT +
Preference number: 5 (lower is better)
Translates to: SRGQFQSPERLFLRHQGGSYIHT*ASGLFG
Trigger: ACCGAATAAACCGCTCGCCAATGTGTGAATATATGA...CCCTCCCTGGTGTCTAAGGAATAGCCGCTCCGGGCTCTGAAATTGCCCACGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGCAGTCTGATCCATGCTaGTTACCTTCAGCTTGGAAT +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMQSDPC*LPSAWN
Trigger: ATTCCAAGCTGAAGGTAACAAGCATGGATCAGACTG...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS GCA 90 bp TCGTCTTGGATATTGCAGTTTAAGTCCGCCGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAGAATTCCACCAGGCGAAGCTTGGTT +
Preference number: 5 (lower is better)
Translates to: SSWILQFKSAESGSL*CSRKAENSTRRSLV
Trigger: AACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTCGGCGGACTTAAACTGCAATATCCAAGACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171197.8
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGTTTCCCGTCCTGAGTTaGATGTATCTGGCTATCAAT +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMFPVLS*MYLAIN
Trigger: ATTGATAGCCAGATACATCAAACTCAGGACGGGAAA...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTTGCACGAAGAGGTGTTaGTTGTACGAGTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESCTKRC*LYESGS
Trigger: AGACCCAGACTCGTACAACAAACACCTCTTCGTGCA...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCAAGTCCGCCCAGAATTaGACGAGGAAGAAGGCGTTT +
Preference number: 5 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAKSAQN*TRKKAF
Trigger: AAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACTT...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTAAGTCCGCCCAGAATTaGACGAGGAAGAAGGCGTTT +
Preference number: 5 (lower is better)
Translates to: APCAVRFTVSRSIMESVCKSAQN*TRKKAF
Trigger: AAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACTT...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGGGCCAGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGTCATATATTCACACATaGGCGAGCGGTTTATTCGGT +
Preference number: 5 (lower is better)
Translates to: GARVAPCAVRFTVSRSIMSYIHT*ASGLFG
Trigger: ACCGAATAAACCGCTCGCCAATGTGTGAATATATGA...CATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCTGGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAGCGGCTATTCCTTAGACACCAGGGAGGGGCGGAGAGAAGAGTGTGTGGTAGTCACCTTAATGGCGGCTaGAATTTCTCGAACTTTCTT +
Preference number: 5 (lower is better)
Translates to: ERLFLRHQGGAERRVCGSHLNGG*NFSNFL
Trigger: AAGAAAGTTCGAGAAATTCAAGCCGCCATTAAGGTG...ACTACCACACACTCTTCTCTCCGCCCCTCCCTGGTGTCTAAGGAATAGCCGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATATGCACGAAGAGGTGTTaGTTGTACGAGTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSICTKRC*LYESGS
Trigger: AGACCCAGACTCGTACAACAAACACCTCTTCGTGCA...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTAAGTCCGCCCAGAATTaGACGAGGAAGAAGGCGTTT +
Preference number: 5 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAKSAQN*TRKKAF
Trigger: AAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACTT...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATACCAAAGGAGCACACTTaGGTGGAACAGGTAACTGTC +
Preference number: 5 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIPKEHT*VEQVTV
Trigger: GACAGTTACCTGTTCCACCAAAGTGTGCTCCTTTGG...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GGTCTGCAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTCCAAAGGAGCACACTTaGGTGGAACAGGTAACTGTC +
Preference number: 5 (lower is better)
Translates to: GLQTDKGEKLRVAIPLRAPKEHT*VEQVTV
Trigger: GACAGTTACCTGTTCCACCAAAGTGTGCTCCTTTGG...AGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTGCAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGCAGTCTGATCCATGCTaGTTACCTTCAGCTTGGAAT +
Preference number: 5 (lower is better)
Translates to: RKSCRKEMVAVQERPLTEQSDPC*LPSAWN
Trigger: ATTCCAAGCTGAAGGTAACAAGCATGGATCAGACTG...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059768.18
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ATGACAGGTCTAGTGGGACCTGACCCCATGGTCGTGAACGAATTGGGTGCAAGATTTCCCGTCCTGAGTTaGATGTATCTGGCTATCAAT +
Preference number: 5 (lower is better)
Translates to: MTGLVGPDPMVVNELGARFPVLS*MYLAIN
Trigger: ATTGATAGCCAGATACATCAAACTCAGGACGGGAAA...TCTTGCACCCAATTCGTTCACGACCATGGGGTCAGGTCCCACTAGACCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GACCAGATGAAATGCTTACGCCACAAGCCCATCCTATACACTTTACACGAGACAGAGGAAGAAGGCGTTTaGAGGGCCCTTTCCAAACAG +
Preference number: 5 (lower is better)
Translates to: DQMKCLRHKPILYTLHETEEEGV*RALSKQ
Trigger: CTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCTC...TGTCTCGTGTAAAGTGTATAGGATGGGCTTGTGGCGTAAGCATTTCATCTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTAGAGGAAGAAGGCGTTTaGAGGGCCCTTTCCAAACAG +
Preference number: 5 (lower is better)
Translates to: DVWILPTSFRERRDKMSVEEEGV*RALSKQ
Trigger: CTGTTTGGAAAGGGCCCTCAAAACGCCTTCTTCCTC...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCCACCTTAATGGCGGCTaGAATTTCTCGAACTTTCTT +
Preference number: 5 (lower is better)
Translates to: TIYPQAGQEACDSDILGSHLNGG*NFSNFL
Trigger: AAGAAAGTTCGAGAAATTCAAGCCGCCATTAAGGTG...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTCAGTCTGATCCATGCTaGTTACCTTCAGCTTGGAAT +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESQSDPC*LPSAWN
Trigger: ATTCCAAGCTGAAGGTAACAAGCATGGATCAGACTG...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGTTTCCCGTCCTGAGTTaGATGTATCTGGCTATCAAT +
Preference number: 5 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRFPVLS*MYLAIN
Trigger: ATTGATAGCCAGATACATCAAACTCAGGACGGGAAA...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTGTGTGTTTTCCCGTCCTGAGTTaGATGTATCTGGCTATCAAT +
Preference number: 5 (lower is better)
Translates to: APCAVRFTVSRSIMESVCFPVLS*MYLAIN
Trigger: ATTGATAGCCAGATACATCAAACTCAGGACGGGAAA...ACACACACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTATGCACGAAGAGGTGTTaGTTGTACGAGTCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: DVWILPTSFRERRDKMSVCTKRC*LYESGS
Trigger: AGACCCAGACTCGTACAACAAACACCTCTTCGTGCA...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTTCATATATTCACACATaGGCGAGCGGTTTATTCGGT +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESSYIHT*ASGLFG
Trigger: ACCGAATAAACCGCTCGCCAATGTGTGAATATATGA...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGAAAGAGCTGCAGGAAAGAGATGGTGGCTGTGCAGGAGAGGCCTCTAACAGAGCTCGAACTTTCTTTCTaGCTAAGACCTGTATATGAC +
Preference number: 5 (lower is better)
Translates to: RKSCRKEMVAVQERPLTELELSF*LRPVYD
Trigger: GTCATATACAGGTCTTAGCAAGAAAGAAAGTTCGAG...CTCTGTTAGAGGCCTCTCCTGCACAGCCACCATCTCTTTCCTGCAGCTCTTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACAATCTATCCACAGGCTGGCCAGGAAGCTTGTGACAGTGACATTCTGGGGAGCTTTCTACCATACATTTaGCCTTCGTCTGATAAGATG +
Preference number: 5 (lower is better)
Translates to: TIYPQAGQEACDSDILGSFLPYI*PSSDKM
Trigger: CATCTTATCAGACGAAGGCAAAATGTATGGTAGAAA...GCTCCCCAGAATGTCACTGTCACAAGCTTCCTGGCCAGCCTGTGGATAGATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATATTTCCCGTCCTGAGTTaGATGTATCTGGCTATCAAT +
Preference number: 5 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSIFPVLS*MYLAIN
Trigger: ATTGATAGCCAGATACATCAAACTCAGGACGGGAAA...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGG +
Preference number: 5 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKSTRRS*VVPMDR
Trigger: CCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp AGGGTAGCACCCTGTGCGGTGAGGTTTACAGTCAGTCGTTCGATAATGGAGAGTTTTCTACCATACATTTaGCCTTCGTCTGATAAGATG +
Preference number: 5 (lower is better)
Translates to: RVAPCAVRFTVSRSIMESFLPYI*PSSDKM
Trigger: CATCTTATCAGACGAAGGCAAAATGTATGGTAGAAA...ACTCTCCATTATCGAACGACTGACTGTAAACCTCACCGCACAGGGTGCTACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp ACCAAGCCTGATGAGCCTTCTGCTTGCTCGGTTGATGACAAGTTTCTTCCAGCCTTTCTACCATACATTTaGCCTTCGTCTGATAAGATG +
Preference number: 5 (lower is better)
Translates to: TKPDEPSACSVDDKFLPAFLPYI*PSSDKM
Trigger: CATCTTATCAGACGAAGGCAAAATGTATGGTAGAAA...GGCTGGAAGAAACTTGTCATCAACCGAGCAAGCAGAAGGCTCATCAGGCTTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000106638.10
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAATCCTGCCACTTCCTTCTTCTTGACCTTGAAAAACTGAGGGATTGGGGGCGGTTTCTACCATACATTTaGCCTTCGTCTGATAAGATG +
Preference number: 5 (lower is better)
Translates to: ESCHFLLLDLEKLRDWGRFLPYI*PSSDKM
Trigger: CATCTTATCAGACGAAGGCAAAATGTATGGTAGAAA...CCGCCCCCAATCCCTCAGTTTTTCAAGGTCAAGAAGAAGGAAGTGGCAGGATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp CAGACAGATAAAGGTGAGAAACTCAGGGTAGCCATTCCTTTGAGGGCTGGCTTATCATATATTCACACATaGGCGAGCGGTTTATTCGGT +
Preference number: 5 (lower is better)
Translates to: QTDKGEKLRVAIPLRAGLSYIHT*ASGLFG
Trigger: ACCGAATAAACCGCTCGCCAATGTGTGAATATATGA...TAAGCCAGCCCTCAAAGGAATGGCTACCCTGAGTTTCTCACCTTTATCTGTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GTTCCTGGCAGGCTTGACCATGTTCCAATGGATGTCCCCACACCTATGAGTATACTCGAACTTTCTTTCTaGCTAAGACCTGTATATGAC +
Preference number: 5 (lower is better)
Translates to: VPGRLDHVPMDVPTPMSILELSF*LRPVYD
Trigger: GTCATATACAGGTCTTAGCAAGAAAGAAAGTTCGAG...TATACTCATAGGTGTGGGGACATCCATTGGAACATGGTCAAGCCTGCCAGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059768.18
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTATCATATATTCACACATaGGCGAGCGGTTTATTCGGT +
Preference number: 5 (lower is better)
Translates to: DVWILPTSFRERRDKMSVSYIHT*ASGLFG
Trigger: ACCGAATAAACCGCTCGCCAATGTGTGAATATATGA...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAACCAAAGGAGCACACTTaGGTGGAACAGGTAACTGTC +
Preference number: 5 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKPKEHT*VEQVTV
Trigger: GACAGTTACCTGTTCCACCAAAGTGTGCTCCTTTGG...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GATGTGTGGATTCTGCCCACCTCTTTCAGAGAGAGAAGAGACAAAATGTCCGTATTTCTACCATACATTTaGCCTTCGTCTGATAAGATG +
Preference number: 5 (lower is better)
Translates to: DVWILPTSFRERRDKMSVFLPYI*PSSDKM
Trigger: CATCTTATCAGACGAAGGCAAAATGTATGGTAGAAA...TACGGACATTTTGTCTCTTCTCTCTCTGAAAGAGGTGGGCAGAATCCACACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS-3UTR CAA 90 bp GAAACCAAGTCATCAGCTTCCTATAGAGCTGGATTTAAAAACGGGCTTTTGAAATCATATATTCACACATaGGCGAGCGGTTTATTCGGT +
Preference number: 5 (lower is better)
Translates to: ETKSSASYRAGFKNGLLKSYIHT*ASGLFG
Trigger: ACCGAATAAACCGCTCGCCAATGTGTGAATATATGA...TTTCAAAAGCCCGTTTTTAAATCCAGCTCTATAGGAAGCTGATGACTTGGTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS CAA 72 bp GGGAAGGTGGGGCGTGGAATCCCAGGCAGCCCCAGCTaGTTGTGGATGGCAGTAGCCGAGACGATCTGGGCT +
Preference number: 6 (lower is better)
Translates to: GKVGRGIPGSPS*LWMAVAETIWA
Trigger: AGCCCAGATCGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGGGATTCCACGCCCCACCTTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 12 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000167060.2
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS CCA 72 bp GTGGGGCGTGGAATCCCAGGCAGCCCCAGCTTGTTGTaGATGGCAGTAGCCGAGACGATCTGGGCTGATGAC +
Preference number: 6 (lower is better)
Translates to: VGRGIPGSPSLL*MAVAETIWADD
Trigger: GTCATCAGCCCAGATCGTCTCGGCTACTGCCATCCACAACAAGCTGGGGCTGCCTGGGATTCCACGCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 12 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000167060.2
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS CAA 90 bp TCTCTCTGCTGTTCAAGGAAAGCGGAGAATTCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGGCCCTGCCAGGCAGGAACTGAGGGG +
Preference number: 6 (lower is better)
Translates to: SLCCSRKAENSTRRS*VVPMDRPCQAGTEG
Trigger: CCCCTCAGTTCCTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTGAACAGCAGAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS GCA 72 bp CCAGACGCCCTCCGCGTCGTTGTCAATCGGCTTATCTaGCGAGTCGCTCATCCTTTCCATGTTTTCGGCAGG +
Preference number: 6 (lower is better)
Translates to: PDALRVVVNRLI*RVAHPFHVFGR
Trigger: CCTGCCGAAAACATGGAAAGGATGAGCGACTCGGCAGATAAGCCGATTGACAACGACGCGGAGGGCGTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000170352.9
CDS CAA 72 bp CAAGGAAAGCGGAGAATTCCACCAGGCGAAGCTTGGTaGTGCCAATGGATCGGCCCTGCCAGGCAGGAACTG +
Preference number: 6 (lower is better)
Translates to: QGKRRIPPGEAW*CQWIGPARQEL
Trigger: CAGTTCCTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS CCA 72 bp GTTCAAGGAAAGCGGAGAATTCCACCAGGCGAAGCTTaGTTGTGCCAATGGATCGGCCCTGCCAGGCAGGAA +
Preference number: 6 (lower is better)
Translates to: VQGKRRIPPGEA*LCQWIGPARQE
Trigger: TTCCTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS CAA 72 bp TGTTCAAGGAAAGCGGAGAATTCCACCAGGCGAAGCTaGGTTGTGCCAATGGATCGGCCCTGCCAGGCAGGA +
Preference number: 6 (lower is better)
Translates to: CSRKAENSTRRS*VVPMDRPCQAG
Trigger: TCCTGCCTGGCAGGGCCGATCCATTGGCACAACCAAGCTTCGCCTGGTGGAATTCTCCGCTTTCCTTGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000171197.8
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS GCA 72 bp TCACACCATAAAAGGCCCCGGCGTCGTCTTGGATATTaGAGTTTAAGTCCGCCGAGTCTGGGTCTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: SHHKRPRRRLGY*SLSPPSLGLSA
Trigger: AGCAGAGAGACCCAGACTCGGCGGACTTAAACTGCAATATCCAAGACGACGCCGGGGCCTTTTATGGTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171197.8
CDS GCA 72 bp ACGAAGAGGTGTTTGTTGTACGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAGAATTCCACCAGGCGA +
Preference number: 6 (lower is better)
Translates to: TKRCLLYESGSL*CSRKAENSTRR
Trigger: TCGCCTGGTGGAATTCTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTCGTACAACAAACACCTCTTCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS GCA 72 bp ATATTGCAGTTTAAGTCCGCCGAGTCTGGGTCTCTCTaGTGTTCAAGGAAAGCGGAGAATTCCACCAGGCGA +
Preference number: 6 (lower is better)
Translates to: ILQFKSAESGSL*CSRKAENSTRR
Trigger: TCGCCTGGTGGAATTCTCCGCTTTCCTTGAACAGCAGAGAGACCCAGACTCGGCGGACTTAAACTGCAATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171197.8
CDS TCA 72 bp CGTCTTGGATATTGCAGTTTAAGTCCGCCCAGAATTTaGCGAGGAAGAAGGCGTTTTGAGGGCCCTTTCCAA +
Preference number: 6 (lower is better)
Translates to: RLGYCSLSPPRI*RGRRRFEGPFQ
Trigger: TTGGAAAGGGCCCTCAAAACGCCTTCTTCCTCGTCAAATTCTGGGCGGACTTAAACTGCAATATCCAAGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000059768.18
ENSMUST00000069256.12
ENSMUST00000084705.13
ENSMUST00000106638.10
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000168981.8
ENSMUST00000170352.9
ENSMUST00000239404.2
ENSMUST00000239442.2
CDS TCA 72 bp ATTTCTCGAACTTTCTTTCTTGCTAAGACCTGTATATaGCTAGACACCTGCTTCCTGGTCCTTGTCTTTCCC +
Preference number: 6 (lower is better)
Translates to: ISRTFFLAKTCI*LDTCFLVLVFP
Trigger: GGGAAAGACAAGGACCAGGAAGCAGGTGTCTAGTCATATACAGGTCTTAGCAAGAAAGAAAGTTCGAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000059768.18
ENSMUST00000164363.9
ENSMUST00000165036.8
ENSMUST00000167060.2
ENSMUST00000239442.2