Pregenerated sensors for TDRP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050052Ensembl transcript IDs: ENSMUST00000062613.12, ENSMUST00000145695.2, ENSMUST00000210414.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGGGTGGCTGGCAAGCTGGGTGGTAGACAGACAGGTAGCTGTGAATaGCAGGTAGATCTAGTAAACCCGGGCCACTCAGCTGTGCCACAG | + |
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Preference number: 1 (lower is better) Translates to: RVAGKLGGRQTGSCE*QVDLVNPGHSAVPQ Trigger: CTGTGGCACAGCTGAGTGGCCCGGGTTTACTAGATCTACCTGTCATTCACAGCTACCTGTCTGTCTACCACCCAGCTTGCCAGCCACCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR TCA 90 bp | TGGTTAGCCAGACACACCAGTGGGGTCCTGCTGTGGGCGACAGCATaGGCCTGCTCTTCCTTCCGATCCTACAGTTACCTCGTTTCGAAG | + |
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Preference number: 1 (lower is better) Translates to: WLARHTSGVLLWATA*ACSSFRSYSYLVSK Trigger: CTTCGAAACGAGGTAACTGTAGGATCGGAAGGAAGAGCAGGCTCATGCTGTCGCCCACAGCAGGACCCCACTGGTGTGTCTGGCTAACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 90 bp | TCCGCAGCAAGGCAACCAGATGTCACCCGGAAGCCATGGTGTGTGTaGGTCACTGAGCACGAAACACTAGCAACTCAGTGGGTTCCTTCC | + |
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Preference number: 1 (lower is better) Translates to: SAARQPDVTRKPWCV*VTEHETLATQWVPS Trigger: GGAAGGAACCCACTGAGTTGCTAGTGTTTCGTGCTCAGTGACCCACACACACCATGGCTTCCGGGTGACATCTGGTTGCCTTGCTGCGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 90 bp | AAAGTCCCTGTGTCAACGTGCAACACTGCATCTCAGGCACACGGGTaGAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCCAGTAGA | + |
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Preference number: 1 (lower is better) Translates to: KVPVSTCNTASQAHG*SELQALSTQHRPSR Trigger: TCTACTGGGCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATGCAGTGTTGCACGTTGACACAGGGACTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 90 bp | CTTCACCTCCTGAGAGGAGACAGGGTAAAAGTCCCTGTGTCAACGTaGAACACTGCATCTCAGGCACACGGGTGCAGTGAGCTACAGGCA | + |
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Preference number: 1 (lower is better) Translates to: LHLLRGDRVKVPVST*NTASQAHGCSELQA Trigger: TGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATGCAGTGTTGCACGTTGACACAGGGACTTTTACCCTGTCTCCTCTCAGGAGGTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 90 bp | GTGGATGTTTCCGCAGCAAGGCAACCAGATGTCACCCGGAAGCCATaGTGTGTGTGGGTCACTGAGCACGAAACACTAGCAACTCAGTGG | + |
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Preference number: 1 (lower is better) Translates to: VDVSAARQPDVTRKP*CVWVTEHETLATQW Trigger: CCACTGAGTTGCTAGTGTTTCGTGCTCAGTGACCCACACACACCATGGCTTCCGGGTGACATCTGGTTGCCTTGCTGCGGAAACATCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 90 bp | CATTGCGTGGGACACGCAGGTACACGAAGCACACTGCTTACACTGTaGAGACTCGAGGACAGTGTGACTGGAGGCTTTTCATTATTAACC | + |
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Preference number: 1 (lower is better) Translates to: HCVGHAGTRSTLLTL*RLEDSVTGGFSLLT Trigger: GGTTAATAATGAAAAGCCTCCAGTCACACTGTCCTCGAGTCTCCACAGTGTAAGCAGTGTGCTTCGTGTACCTGCGTGTCCCACGCAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 90 bp | ACGAAGCACACTGCTTACACTGTGGAGACTCGAGGACAGTGTGACTaGAGGCTTTTCATTATTAACCAAAACAAAGAGAACCACGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: TKHTAYTVETRGQCD*RLFIINQNKENHGS Trigger: GGAGCCGTGGTTCTCTTTGTTTTGGTTAATAATGAAAAGCCTCCAGTCACACTGTCCTCGAGTCTCCACAGTGTAAGCAGTGTGCTTCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR GCA 90 bp | CAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCCAGTACACCAGTGGGGTCCTaGTGTGGGCGACAGCATGAG | + |
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Preference number: 2 (lower is better) Translates to: QAHGCSELQALSTQHRPSTPVGS*CGRQHE Trigger: CTCATGCTGTCGCCCACAGCAGGACCCCACTGGTGT...ACTGGGCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CCA 90 bp | CACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCCAGTAGACACGTGGATGGGTACGGGTaGCTGGCAAGCTGGGTGGTA | + |
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Preference number: 2 (lower is better) Translates to: HGCSELQALSTQHRPSRHVDGYG*LASWVV Trigger: TACCACCCAGCTTGCCAGCCACCCGTACCCATCCAC...GTGTCTACTGGGCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CCA 90 bp | ATTGCGTGGGACACGCAGGTACACGAAGCACACTGCTTACACTGTGGAGACTCGGTCACCCGGAAGCCATaGTGTGTGTGGGTCACTGAG | + |
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Preference number: 2 (lower is better) Translates to: IAWDTQVHEAHCLHCGDSVTRKP*CVWVTE Trigger: CTCAGTGACCCACACACACCATGGCTTCCGGGTGAC...CGAGTCTCCACAGTGTAAGCAGTGTGCTTCGTGTACCTGCGTGTCCCACGCAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR TCA 90 bp | CTCGGTATGGTCGGCGACCACGTCTTCAGCAGTAAGTTTGGGAGGCTCCCAACCGGCGTCCCAAAATCCTaGTTTCTTCTCTGCCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: LGMVGDHVFSSKFGRLPTGVPKS*FLLCLQ Trigger: CTGAAGGCAGAGAAGAAATCAGGATTTTGGGACGCC...GGTTGGGAGCCTCCCAAACTTACTGCTGAAGACGTGGTCGCCGACCATACCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210414.2 |
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| 3UTR-3UTR TCA 90 bp | CATCTCAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCGACTCGAGGACAGTGTaGCTGGAGGCTTTTCATTAT | + |
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Preference number: 2 (lower is better) Translates to: HLRHTGAVSYRHLALSTGDSRTV*LEAFHY Trigger: ATAATGAAAAGCCTCCAGTCACACTGTCCTCGAGTC...GCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR GCA 90 bp | GCCACTCAGCTGTGCCACAGAACATTGCGTGGGACACGCAGGTACACGAAGCACCCACAACACTCATGTTaGATGCAGAGACAAGATGGG | + |
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Preference number: 2 (lower is better) Translates to: ATQLCHRTLRGTRRYTKHPQHSC*MQRQDG Trigger: CCCATCTTGTCTCTGCATGCAACATGAGTGTTGTGG...GTGCTTCGTGTACCTGCGTGTCCCACGCAATGTTCTGTGGCACAGCTGAGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR GCA 90 bp | CGACAGCATGAGCCTGCTCTTCCTTCCGATCCTACAGTTACCTCGTTTCGAAGTCTCCTCCTCAGCAGATaGGCCCCTCAAGATGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: RQHEPALPSDPTVTSFRSLLLSR*APQDVL Trigger: CAGGACATCTTGAGGGGCGCATCTGCTGAGGAGGAG...ACTTCGAAACGAGGTAACTGTAGGATCGGAAGGAAGAGCAGGCTCATGCTGTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CCA 90 bp | CATCTCAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCTACATTCTCAAGGCTaGGTTTGTATTCCTGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: HLRHTGAVSYRHLALSTGLHSQG*VCIPGP Trigger: TGGCCCAGGAATACAAACCCAGCCTTGAGAATGTAG...GCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR TCA 90 bp | GGCTGGGTTTGTATTCCTGGGCCACAGGTGGTTAGCCAGACACACCAGTGGGGTACAGGTAGCTGTGAATaGCAGGTAGATCTAGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: GWVCIPGPQVVSQTHQWGTGSCE*QVDLVN Trigger: GTTTACTAGATCTACCTGTCATTCACAGCTACCTGT...ACCCCACTGGTGTGTCTGGCTAACCACCTGTGGCCCAGGAATACAAACCCAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CCA 90 bp | GAGGAGACTGGCTCACAGGACAGTGTCTACAGCGCACACATCCATTCAGCATATACACTAGCAACTCAGTaGGTTCCTTCCCCGGGTATG | + |
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Preference number: 2 (lower is better) Translates to: EETGSQDSVYSAHIHSAYTLATQ*VPSPGM Trigger: CATACCCGGGGAAGGAACCCACTGAGTTGCTAGTGT...ATATGCTGAATGGATGTGTGCGCTGTAGACACTGTCCTGTGAGCCAGTCTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CCA 90 bp | CATCTCAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCGAGGACAGTGTGACTaGAGGCTTTTCATTATTAAC | + |
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Preference number: 2 (lower is better) Translates to: HLRHTGAVSYRHLALSTGRGQCD*RLFIIN Trigger: GTTAATAATGAAAAGCCTCCAGTCACACTGTCCTCG...GCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR GCA 90 bp | AAGTCAGAGCTCATGCACTCAACCGGTTACCTGAGGATAGAGATTTTCACACTCTCGGAAGATGCTTCTTaGGTTCTGACAAGGGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: KSELMHSTGYLRIEIFTLSEDAS*VLTRGE Trigger: CTCTCCCCTTGTCAGAACGCAAGAAGCATCTTCCGA...GAGTGTGAAAATCTCTATCCTCAGGTAACCGGTTGAGTGCATGAGCTCTGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR TCA 90 bp | GAACATTGCGTGGGACACGCAGGTACACGAAGCACACTGCTTACACTGTGGAGAGTCAAGATTACTGGGTaGCTAAAACTTATTCCTAGT | + |
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Preference number: 2 (lower is better) Translates to: EHCVGHAGTRSTLLTLWRVKITG*LKLIPS Trigger: ACTAGGAATAAGTTTTAGTCACCCAGTAATCTTGAC...TCTCCACAGTGTAAGCAGTGTGCTTCGTGTACCTGCGTGTCCCACGCAATGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CCA 90 bp | AGCACACTGCTTACACTGTGGAGACTCGAGGACAGTGTGACTGGAGGCTTTTCATCCAAGCACTGTAACTaGAAAACAAGACAAACATGC | + |
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Preference number: 2 (lower is better) Translates to: STLLTLWRLEDSVTGGFSSKHCN*KTRQTC Trigger: GCATGTTTGTCTTGTTTTCCAGTTACAGTGCTTGGA...TGAAAAGCCTCCAGTCACACTGTCCTCGAGTCTCCACAGTGTAAGCAGTGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | ATTCCTGGGCCACAGGTGGTTAGCCAGACACACCAGTaGGGTCCTGCTGTGGGCGACAGCATGAGCCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: IPGPQVVSQTHQ*GPAVGDSMSLL Trigger: GAGCAGGCTCATGCTGTCGCCCACAGCAGGACCCCACTGGTGTGTCTGGCTAACCACCTGTGGCCCAGGAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR TCA 72 bp | AGACACACCAGTGGGGTCCTGCTGTGGGCGACAGCATaGGCCTGCTCTTCCTTCCGATCCTACAGTTACCTC | + |
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Preference number: 3 (lower is better) Translates to: RHTSGVLLWATA*ACSSFRSYSYL Trigger: GAGGTAACTGTAGGATCGGAAGGAAGAGCAGGCTCATGCTGTCGCCCACAGCAGGACCCCACTGGTGTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | AACCCGGGCCACTCAGCTGTGCCACAGAACATTGCGTaGGACACGCAGGTACACGAAGCACACTGCTTACAC | + |
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Preference number: 3 (lower is better) Translates to: NPGHSAVPQNIA*DTQVHEAHCLH Trigger: GTGTAAGCAGTGTGCTTCGTGTACCTGCGTGTCCCACGCAATGTTCTGTGGCACAGCTGAGTGGCCCGGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | GACAGACTGATGTGTGGACAGGTGGATGGGTACGGGTaGCTGGCAAGCTGGGTGGTAGACAGACAGGTAGCT | + |
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Preference number: 3 (lower is better) Translates to: DRLMCGQVDGYG*LASWVVDRQVA Trigger: AGCTACCTGTCTGTCTACCACCCAGCTTGCCAGCCACCCGTACCCATCCACCTGTCCACACATCAGTCTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR-3UTR CAA 90 bp | AGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCCAGTACAGACAGAGGCTGTGTaGTGTTCAAGAGCTCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: RHTGAVSYRHLALSTGPVQTEAV*CSRAPS Trigger: GGAAGGAGCTCTTGAACACAACACAGCCTCTGTCTG...TACTGGGCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 72 bp | AGTAAACCCGGGCCACTCAGCTGTGCCACAGAACATTaGGTGGGACACGCAGGTACACGAAGCACACTGCTT | + |
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Preference number: 3 (lower is better) Translates to: SKPGPLSCATEH*VGHAGTRSTLL Trigger: AAGCAGTGTGCTTCGTGTACCTGCGTGTCCCACGCAATGTTCTGTGGCACAGCTGAGTGGCCCGGGTTTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 72 bp | GTGTCAACGTGCAACACTGCATCTCAGGCACACGGGTaGAGTGAGCTACAGGCACTTAGCACTCAGCACAGG | + |
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Preference number: 3 (lower is better) Translates to: VSTCNTASQAHG*SELQALSTQHR Trigger: CCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATGCAGTGTTGCACGTTGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | TCCGCAGCAAGGCAACCAGATGTCACCCGGAAGCCATaGTGTGTGTGGGTCACTGAGCACGAAACACTAGCA | + |
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Preference number: 3 (lower is better) Translates to: SAARQPDVTRKP*CVWVTEHETLA Trigger: TGCTAGTGTTTCGTGCTCAGTGACCCACACACACCATGGCTTCCGGGTGACATCTGGTTGCCTTGCTGCGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 72 bp | CTGAGAGGAGACAGGGTAAAAGTCCCTGTGTCAACGTaGAACACTGCATCTCAGGCACACGGGTGCAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: LRGDRVKVPVST*NTASQAHGCSE Trigger: CTCACTGCACCCGTGTGCCTGAGATGCAGTGTTGCACGTTGACACAGGGACTTTTACCCTGTCTCCTCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | AGGCAACCAGATGTCACCCGGAAGCCATGGTGTGTGTaGGTCACTGAGCACGAAACACTAGCAACTCAGTGG | + |
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Preference number: 3 (lower is better) Translates to: RQPDVTRKPWCV*VTEHETLATQW Trigger: CCACTGAGTTGCTAGTGTTTCGTGCTCAGTGACCCACACACACCATGGCTTCCGGGTGACATCTGGTTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR TCA 72 bp | AGATGTCACCCGGAAGCCATGGTGTGTGTGGGTCACTaGGCACGAAACACTAGCAACTCAGTGGGTTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: RCHPEAMVCVGH*ARNTSNSVGSF Trigger: GAAGGAACCCACTGAGTTGCTAGTGTTTCGTGCTCAGTGACCCACACACACCATGGCTTCCGGGTGACATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR TCA 72 bp | GGCAAGCTGGGTGGTAGACAGACAGGTAGCTGTGAATaGCAGGTAGATCTAGTAAACCCGGGCCACTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: GKLGGRQTGSCE*QVDLVNPGHSA Trigger: AGCTGAGTGGCCCGGGTTTACTAGATCTACCTGTCATTCACAGCTACCTGTCTGTCTACCACCCAGCTTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | GTGTGGGTCACTGAGCACGAAACACTAGCAACTCAGTaGGTTCCTTCCCCGGGTATGAGAGGGCTCAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: VWVTEHETLATQ*VPSPGMRGLKN Trigger: ATTCTTGAGCCCTCTCATACCCGGGGAAGGAACCCACTGAGTTGCTAGTGTTTCGTGCTCAGTGACCCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 72 bp | ACAGTGTCTACAGCGCACACATCCATTCAGCATATATaGACCCAGTGGGTGGATGTTTCCGCAGCAAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: TVSTAHTSIQHI*TQWVDVSAARQ Trigger: TTGCCTTGCTGCGGAAACATCCACCCACTGGGTGCATATATGCTGAATGGATGTGTGCGCTGTAGACACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR TCA 72 bp | GAGACAAGATGGGGACGTCCTAAAATCTCAAGTGACTaGGGCTGGCATGAACTTAGAGGAGACTGGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: ETRWGRPKISSD*GWHELRGDWLT Trigger: TGTGAGCCAGTCTCCTCTAAGTTCATGCCAGCCTCAGTCACTTGAGATTTTAGGACGTCCCCATCTTGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR CCA 72 bp | AAGAGAACCACGGCTCCCCTGTCCAAGCACTGTAACTaGAAAACAAGACAAACATGCGCACCACGTGAACAT | + |
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Preference number: 3 (lower is better) Translates to: KRTTAPLSKHCN*KTRQTCAPREH Trigger: ATGTTCACGTGGTGCGCATGTTTGTCTTGTTTTCCAGTTACAGTGCTTGGACAGGGGAGCCGTGGTTCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 72 bp | CTGTCCAAGCACTGTAACTGGAAAACAAGACAAACATaGGCACCACGTGAACATTCCCTACTGAGACCGCAA | + |
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Preference number: 3 (lower is better) Translates to: LSKHCNWKTRQT*APREHSLLRPQ Trigger: TTGCGGTCTCAGTAGGGAATGTTCACGTGGTGCGCATGTTTGTCTTGTTTTCCAGTTACAGTGCTTGGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| 3UTR GCA 72 bp | AGATGTCCTGACACCCTACCTCAAACCACCTTCAGTTaGTTCCAGCATCTAGATTTTGCTTCGTTTGTAACT | + |
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Preference number: 3 (lower is better) Translates to: RCPDTLPQTTFS*FQHLDFASFVT Trigger: AGTTACAAACGAAGCAAAATCTAGATGCTGGAAGCAACTGAAGGTGGTTTGAGGTAGGGTGTCAGGACATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR CCA 90 bp | CAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCCAGTTCCAGCGGGAGCTGCTaGCTGAGTTGGCGAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QAHGCSELQALSTQHRPSSSGSC*LSWRGW Trigger: CCAGCCTCGCCAACTCAGCCAGCAGCTCCCGCTGGA...ACTGGGCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR GCA 90 bp | ACACATCCATTCAGCATATATGCACCCAGTGGGTGGATGTTTCCGCAGCAAGGCGGCTCCAGCGGGAGCTaGTGGCTGAGTTGGCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: THPFSIYAPSGWMFPQQGGSSGS*WLSWRG Trigger: GCCTCGCCAACTCAGCCAGCAGCTCCCGCTGGAGCC...GCCTTGCTGCGGAAACATCCACCCACTGGGTGCATATATGCTGAATGGATGTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR TCA 90 bp | GAGGAGACTGGCTCACAGGACAGTGTCTACAGCGCACACATCCATTCAGCATATCTTCTTTCCAACCTCTaGGACTTGCTCCCGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: EETGSQDSVYSAHIHSAYLLSNL*DLLPTP Trigger: CGGCGTCGGGAGCAAGTCTCAGAGGTTGGAAAGAAG...ATATGCTGAATGGATGTGTGCGCTGTAGACACTGTCCTGTGAGCCAGTCTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR CCA 90 bp | AGCACACTGCTTACACTGTGGAGACTCGAGGACAGTGTGACTGGAGGCTTTTCAAGCTGCTGGCTGAGTTaGCGAGGCTGGTGTACTTGG | + |
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Preference number: 4 (lower is better) Translates to: STLLTLWRLEDSVTGGFSSCWLS*RGWCTW Trigger: CCAAGTACACCAGCCTCGCCAACTCAGCCAGCAGCT...TGAAAAGCCTCCAGTCACACTGTCCTCGAGTCTCCACAGTGTAAGCAGTGTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR TCA 90 bp | ATTGCGTGGGACACGCAGGTACACGAAGCACACTGCTTACACTGTGGAGACTCGGGCGTCCCAAAATCCTaGTTTCTTCTCTGCCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: IAWDTQVHEAHCLHCGDSGVPKS*FLLCLQ Trigger: CTGAAGGCAGAGAAGAAATCAGGATTTTGGGACGCC...CGAGTCTCCACAGTGTAAGCAGTGTGCTTCGTGTACCTGCGTGTCCCACGCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR GCA 90 bp | CAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCCCAGTATTAAACAGAGAAGTTaGTTCTTTCCAACCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: QAHGCSELQALSTQHRPSIKQRS*FFPTSE Trigger: CTCAGAGGTTGGAAAGAAGCAACTTCTCTGTTTAAT...ACTGGGCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR CAA 90 bp | GGCCACAGGTGGTTAGCCAGACACACCAGTGGGGTCCTGCTGTGGGCGACAGCATCTTCAGCAGTAAGTTaGGGAGGCTCCCAACCTTCG | + |
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Preference number: 5 (lower is better) Translates to: GHRWLARHTSGVLLWATASSAVS*GGSQPS Trigger: CGAAGGTTGGGAGCCTCCCAAACTTACTGCTGAAGA...TGCTGTCGCCCACAGCAGGACCCCACTGGTGTGTCTGGCTAACCACCTGTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CCA 90 bp | TCCCAGGCAGACCAGGGTGGGCAGCCACTTCTATCATCCTCGGTATaGTCGGCGACCACGTCTTCAGCAGTAAGTTTGGGAGGCTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: SQADQGGQPLLSSSV*SATTSSAVSLGGSQ Trigger: TTGGGAGCCTCCCAAACTTACTGCTGAAGACGTGGTCGCCGACCATACCGAGGATGATAGAAGTGGCTGCCCACCCTGGTCTGCCTGGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR CAA 90 bp | CATCTCAGGCACACGGGTGCAGTGAGCTACAGGCACTTAGCACTCAGCACAGGCTCTGTCAGGTGGCCTTaGCTCTGTCGCCTGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: HLRHTGAVSYRHLALSTGSVRWP*LCRLML Trigger: CAGCATCAGGCGACAGAGCAAAGGCCACCTGACAGA...GCCTGTGCTGAGTGCTAAGTGCCTGTAGCTCACTGCACCCGTGTGCCTGAGATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS-3UTR CAA 90 bp | GAACATTCCCTACTGAGACCGCAACCGAGGACAGTCAGCAGTGTGAGACAGGCAGCGAGGCTGGTGTACTaGGTAGAGCCCTTGGTATCG | + |
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Preference number: 5 (lower is better) Translates to: EHSLLRPQPRTVSSVRQAARLVY*VEPLVS Trigger: CGATACCAAGGGCTCTACCAAGTACACCAGCCTCGC...TGCCTGTCTCACACTGCTGACTGTCCTCGGTTGCGGTCTCAGTAGGGAATGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CCA 90 bp | CAAAATCCTGATTTCTTCTCTGCCTTCAGCTCTTCTCTTAGTCGTTaGTTAGTTCCTTTGGACTTAGGAGATCTGGAAGTCTCGAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: QNPDFFSAFSSSLSR*LVPLDLGDLEVSRR Trigger: TCTCCTCGAGACTTCCAGATCTCCTAAGTCCAAAGGAACTAACCAACGACTAAGAGAAGAGCTGAAGGCAGAGAAGAAATCAGGATTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS TCA 72 bp | ACCTCTGAGACTTGCTCCCGACGCCGGGGCGGCTGCTaGTGCTGGCGGTGCCCCTCGCAGCACATCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: TSETCSRRRGGC*CWRCPSQHILF Trigger: GAAGAGGATGTGCTGCGAGGGGCACCGCCAGCATCAGCAGCCGCCCCGGCGTCGGGAGCAAGTCTCAGAGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062613.12 ENSMUST00000145695.2 |
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| CDS CAA 90 bp | AGGCTCCAGCGGGAGCTGCTGGCTGAGTTGGCGAGGCTGGTGTACTaGGTAGAGCCCTTGGTATCGTCCTCCCAGGCAGACCAGGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: RLQRELLAELARLVY*VEPLVSSSQADQGG Trigger: CCCACCCTGGTCTGCCTGGGAGGACGATACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAACTCAGCCAGCAGCTCCCGCTGGAGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 72 bp | GCTGACCGGAGGCTCCAGCGGGAGCTGCTGGCTGAGTaGGCGAGGCTGGTGTACTTGGTAGAGCCCTTGGTA | + |
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Preference number: 6 (lower is better) Translates to: ADRRLQRELLAE*ARLVYLVEPLV Trigger: TACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAACTCAGCCAGCAGCTCCCGCTGGAGCCTCCGGTCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 90 bp | AGCTTTCCCGCTGACCGGAGGCTCCAGCGGGAGCTGCTGGCTGAGTaGGCGAGGCTGGTGTACTTGGTAGAGCCCTTGGTATCGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SFPADRRLQRELLAE*ARLVYLVEPLVSSS Trigger: GGAGGACGATACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAACTCAGCCAGCAGCTCCCGCTGGAGCCTCCGGTCAGCGGGAAAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 72 bp | GCTGAGTTGGCGAGGCTGGTGTACTTGGTAGAGCCCTaGGTATCGTCCTCCCAGGCAGACCAGGGTGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: AELARLVYLVEP*VSSSQADQGGQ Trigger: CTGCCCACCCTGGTCTGCCTGGGAGGACGATACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAACTCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 72 bp | CGGGAGCTGCTGGCTGAGTTGGCGAGGCTGGTGTACTaGGTAGAGCCCTTGGTATCGTCCTCCCAGGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RELLAELARLVY*VEPLVSSSQAD Trigger: GTCTGCCTGGGAGGACGATACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAACTCAGCCAGCAGCTCCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 90 bp | GAGCTGCTGGCTGAGTTGGCGAGGCTGGTGTACTTGGTAGAGCCCTaGGTATCGTCCTCCCAGGCAGACCAGGGTGGGCAGCCACTTCTA | + |
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Preference number: 6 (lower is better) Translates to: ELLAELARLVYLVEP*VSSSQADQGGQPLL Trigger: TAGAAGTGGCTGCCCACCCTGGTCTGCCTGGGAGGACGATACCAAGGGCTCTACCAAGTACACCAGCCTCGCCAACTCAGCCAGCAGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 72 bp | CATTCTCCCTCTTCACAGGTCTCTGTCAGGTGGCCTTaGCTCTGTCGCCTGATGCTGACCAGCTTTCCCGCT | + |
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Preference number: 6 (lower is better) Translates to: HSPSSQVSVRWP*LCRLMLTSFPA Trigger: AGCGGGAAAGCTGGTCAGCATCAGGCGACAGAGCAAAGGCCACCTGACAGAGACCTGTGAAGAGGGAGAATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CAA 90 bp | TTCTTCTCTGCCTTCAGCTCTTCTCTTAGTCGTTGGTTAGTTCCTTaGGACTTAGGAGATCTGGAAGTCTCGAGGAGATGTTCTTCATCA | + |
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Preference number: 6 (lower is better) Translates to: FFSAFSSSLSRWLVP*DLGDLEVSRRCSSS Trigger: TGATGAAGAACATCTCCTCGAGACTTCCAGATCTCCTAAGTCCAAAGGAACTAACCAACGACTAAGAGAAGAGCTGAAGGCAGAGAAGAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS CCA 72 bp | GATTTCTTCTCTGCCTTCAGCTCTTCTCTTAGTCGTTaGTTAGTTCCTTTGGACTTAGGAGATCTGGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: DFFSAFSSSLSR*LVPLDLGDLEV Trigger: GACTTCCAGATCTCCTAAGTCCAAAGGAACTAACCAACGACTAAGAGAAGAGCTGAAGGCAGAGAAGAAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062613.12 |
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| CDS GCA 72 bp | GAGATGTTCTTCATCATCTTTATTAAACAGAGAAGTTaGTTCTTTCCAACCTCTGAGACTTGCTCCCGACGC | + |
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Preference number: 6 (lower is better) Translates to: EMFFIIFIKQRS*FFPTSETCSRR Trigger: GCGTCGGGAGCAAGTCTCAGAGGTTGGAAAGAAGCAACTTCTCTGTTTAATAAAGATGATGAAGAACATCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062613.12 ENSMUST00000145695.2 |
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