RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TDRD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025081

Ensembl transcript IDs: ENSMUST00000078723.11, ENSMUST00000111604.2, ENSMUST00000111606.8, ENSMUST00000121249.8

Found 439 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGAAAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTaGCTCATGCTGCTCATGGCTGGGATTACAGGTGTGCACCACCGC +
Preference number: 1 (lower is better)
Translates to: RKHLTRPLLALSLRS*LMLLMAGITGVHHR
Trigger: GCGGTGGTGCACACCTGTAATCCCAGCCATGAGCAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR GCA 90 bp AGAGATGCTAGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTaGCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGTAGAGCAA +
Preference number: 1 (lower is better)
Translates to: RDARAGTVAQRKRRA*LVHERLELLYSVEQ
Trigger: TTGCTCTACTGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCTAGCATCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR TCA 90 bp AGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATaGGAGGCTCGAGCTTCTATACTCAGTAGAGCAAATACATACACA +
Preference number: 1 (lower is better)
Translates to: SWDCSSEEEESLPRT*EARASILSRANTYT
Trigger: TGTGTATGTATTTGCTCTACTGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR CCA 90 bp TATGAGAGACTACTGGGCTGTCAGGAAGGCACACTCTGCTGCACATaGCTACGGTTAGGACAATCTCTGATCATGAGGTATGACAAATGT +
Preference number: 1 (lower is better)
Translates to: YERLLGCQEGTLCCT*LRLGQSLIMRYDKC
Trigger: ACATTTGTCATACCTCATGATCAGAGATTGTCCTAACCGTAGCCATGTGCAGCAGAGTGTGCCTTCCTGACAGCCCAGTAGTCTCTCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGCCTCATGCTGCTCATaGCTGGGATTACAGGTGTGC +
Preference number: 2 (lower is better)
Translates to: SYRPHLSMQHLASSSSALASCCS*LGLQVC
Trigger: GCACACCTGTAATCCCAGCCATGAGCAGCATGAGGC...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGGATTCATGTATTTCGTaGAAAGAATCGGGGAGAGGG +
Preference number: 2 (lower is better)
Translates to: RAGTVAQRKRRACLVHERDSCIS*KESGRG
Trigger: CCCTCTCCCCGATTCTTTCCACGAAATACATGAATC...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR CAA 90 bp GTTTTGTTTGTGATGAGAAAGCATCTAACTAGGCCCTTGCTGGCTTaGAGCCTGAGGTCTTGCCTCATGCTGCTCATGGCTGGGATTACA +
Preference number: 2 (lower is better)
Translates to: VLFVMRKHLTRPLLA*SLRSCLMLLMAGIT
Trigger: TGTAATCCCAGCCATGAGCAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTTTCTCATCACAAACAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGATTCATGTATTTCGTaGAAAGAATCGGGGAGAGGG +
Preference number: 2 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRDSCIS*KESGRG
Trigger: CCCTCTCCCCGATTCTTTCCACGAAATACATGAATC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGATTCATGTATTTCGTaGAAAGAATCGGGGAGAGGG +
Preference number: 2 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIDSCIS*KESGRG
Trigger: CCCTCTCCCCGATTCTTTCCACGAAATACATGAATC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACCATCCAAGCACAGCTaGGAGAAGCAGTGCACATCC +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQPSKHS*EKQCTS
Trigger: GGATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR GCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGAAGGCACACTCTGCTaGACATGGCTACGGTTAGGA +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQEGTLC*TWLRLG
Trigger: TCCTAACCGTAGCCATGTGCAGCAGAGTGTGCCTTC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACATGCTGCTCATGGCTaGGATTACAGGTGTGCACCA +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQHAAHG*DYRCAP
Trigger: TGGTGCACACCTGTAATCCCAGCCATGAGCAGCATG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAACTGTGGGACAAGTATaGGAGACTACTGGGCTGTCA +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQTVGQV*ETTGLS
Trigger: TGACAGCCCAGTAGTCTCTCATACTTGTCCCACAGT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGATTCATGTATTTCGTaGAAAGAATCGGGGAGAGGG +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQDSCIS*KESGRG
Trigger: CCCTCTCCCCGATTCTTTCCACGAAATACATGAATC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGAGCATAAGTCTGAATaGCTACAGACTAGTGGGAAA +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQEHKSE*LQTSGK
Trigger: TTTCCCACTAGTCTGTAGCCATTCAGACTTATGCTC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATCTGATCATGAGGTATaGCAAATGTGCTCTCCATTT +
Preference number: 2 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQSDHEV*QMCSPF
Trigger: AAATGGAGAGCACATTTGTCATACCTCATGATCAGA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR TCA 72 bp GGAACCAAAGAGAGCGCATCGGGACGAGGCAGCAGATaGCAGGGAGCGTCCCACTGGCAAAGAAAGGCCTGG +
Preference number: 3 (lower is better)
Translates to: GTKESASGRGSR*QGASHWQRKAW
Trigger: CCAGGCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCGCTCTCTTTGGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CAA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGAGGCCCTTGCTGGCTTaGAGCCTGAGGTCTTGCCTC +
Preference number: 3 (lower is better)
Translates to: SYRPHLSMQHLASSSSALRPLLA*SLRSCL
Trigger: GAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCT...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCAGGCCCTTGCTGGCTTaGAGCCTGAGGTCTTGCCTC +
Preference number: 3 (lower is better)
Translates to: ATSYPGKHATQKQGTKESRPLLA*SLRSCL
Trigger: GAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCT...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCATCTAACTAGGCCCTaGCTGGCTTTGAGCCTGAGG +
Preference number: 3 (lower is better)
Translates to: ATSYPGKHATQKQGTKESHLTRP*LALSLR
Trigger: CCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTCTCAGGTCTGGCGTTaGCTGTCTCTTTCTTCCCAG +
Preference number: 3 (lower is better)
Translates to: ATSYPGKHATQKQGTKESSQVWR*LSLSSQ
Trigger: CTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CAA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCTCAGGTCTGGCGTTaGCTGTCTCTTTCTTCCCAG +
Preference number: 3 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISQVWR*LSLSSQ
Trigger: CTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR CCA 72 bp CATCCAAGCACAGCTGAGAGAAGCAGTGCACATCCTTaGAGTGAGCCACAAGTTACCCAGGAAAACATGCCA +
Preference number: 3 (lower is better)
Translates to: HPSTAERSSAHP*SEPQVTQENMP
Trigger: TGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACTGCTTCTCTCAGCTGTGCTTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR TCA 72 bp TGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATaGGAGGCTCGAGCTTCTATACTCAGTAGAGCAAAT +
Preference number: 3 (lower is better)
Translates to: CSSEEEESLPRT*EARASILSRAN
Trigger: ATTTGCTCTACTGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR-3UTR CAA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATGTCAAGGCTGGAGCTaGTGGACACACTATGATCCA +
Preference number: 3 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQCQGWS*WTHYDP
Trigger: TGGATCATAGTGTGTCCACAAGCTCCAGCCTTGACA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR GCA 72 bp AAAACACACACACAATTCTTTCTCAGGTCTGGCGTTTaGTGTCTCTTTCTTCCCAGTGTTTATTTCCAAGAG +
Preference number: 3 (lower is better)
Translates to: KTHTQFFLRSGV*CLFLPSVYFQE
Trigger: CTCTTGGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGTGTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGCTCCACCAGGGCCCTaGTCCCCAGCATGCCCACCA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGAPPGP*SPACPP
Trigger: TGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGTGCTACAGGACTTCTaGGAGGGTCCTGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGVLQDF*EGPGAG
Trigger: CCCCGCCCCAGGACCCTCTCAGAAGTCCTGTAGCAC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCTTCTGAGAGGGTCCTaGGGCGGGGGCTTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGLLRGS*GGGLLS
Trigger: GGAAAGCAAGCCCCCGCCCCAGGACCCTCTCAGAAG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCTGGCTGGGATGGGCTaGACTCTGGAAAGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGLAGMG*TLERGR
Trigger: CCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCACGTGGGCCTTCCTCTaGAGCACATCCACGGCTTGT +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGTWAFL*STSTAC
Trigger: ACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGT...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCTGTGGTCCACACTCTaGTCCGTGGAGCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGLWSTL*SVELCS
Trigger: TGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACAG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCAACAGGCCACAGCGGTaGCAGGTTGTTGACCGAAGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGNRPQR*QVVDRR
Trigger: CCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTT...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGTGCTACAGGACTTCTaGGAGGGTCCTGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTVLQDF*EGPGAG
Trigger: CCCCGCCCCAGGACCCTCTCAGAAGTCCTGTAGCAC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCAGTAGTACGTCTGCTTaGACTGGGAGCACCTCAGCG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGSSTSA*TGSTSA
Trigger: CGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACT...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGCAGCTCCAGGTGGCTaGCTGGGATGGGCTGCACTC +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALAAPGG*LGWAAL
Trigger: GAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGC...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCAGCTCCAGGTGGCTaGCTGGGATGGGCTGCACTC +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTAAPGG*LGWAAL
Trigger: GAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGGGGTGGTTATGCTGTaGTACAGGACTTCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGGVVML*YRTSER
Trigger: CCTCTCAGAAGTCCTGTAGCACAGCATAACCACCCC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCTTCTGAGAGGGTCCTaGGGCGGGGGCTTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALLLRGS*GGGLLS
Trigger: GGAAAGCAAGCCCCCGCCCCAGGACCCTCTCAGAAG...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCTACAGATGGTGCTGTaGGAAGACCAGTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGLQMVL*EDQSLL
Trigger: GAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTCAATGTACAGGACGTaGGCCTTCCTCTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGSMYRT*AFLCST
Trigger: TGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGCTCCACCAGGGCCCTaGTCCCCAGCATGCCCACCA +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSAPPGP*SPACPP
Trigger: TGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGC...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGAGCATCTAATGATCTaGAAGGGCAGCTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGEHLMI*KGSSRW
Trigger: CCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGTGCTACAGGACTTCTaGGAGGGTCCTGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESVLQDF*EGPGAG
Trigger: CCCCGCCCCAGGACCCTCTCAGAAGTCCTGTAGCAC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCCACGTCCTTTTCTTTaGTGGCAAAGCCCGAGTCTA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGPRPFL*WQSPSL
Trigger: TAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCAGCACATGGTCCAGCTaGTTTCCTGAGCTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGSTWSS*FPELCR
Trigger: TCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCT...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCTTCTGAGAGGGTCCTaGGGCGGGGGCTTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLLLRGS*GGGLLS
Trigger: GGAAAGCAAGCCCCCGCCCCAGGACCCTCTCAGAAG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCATTTCCACCAGCACATaGTCCAGCTGCTTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGISTST*SSCFPE
Trigger: CTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAAT...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGAGCGTGGAATCACATaGCCACAGTATTCACTGAGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGERGIT*PQYSLR
Trigger: CCTCAGTGAATACTGTGGCCATGTGATTCCACGCTC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGCTCCACCAGGGCCCTaGTCCCCAGCATGCCCACCA +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIAPPGP*SPACPP
Trigger: TGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGGGTGGCTGGCTGGGATaGGCTGCACTCTGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERGGWLG*AALWKE
Trigger: CTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACC...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGCTCTGTTCCAGGTCTaGTCAACTGTGTATTTGGCA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGALFQV*STVYLA
Trigger: TGCCAAATACACAGTTGATCAGACCTGGAACAGAGC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGTACCATCTCTTTCATaGCACACACAGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGVPSLS*HTQLLE
Trigger: CTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTAC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCTTCCACTGCTCTGCTaGAGGGCTGGCTTGCACCCT +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLLPLLC*RAGLHP
Trigger: AGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGACGTGGGCCTTCCTCTaGAGCACATCCACGGCTTGT +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERTWAFL*STSTAC
Trigger: ACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGT...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTGTGGTCCACACTCTaGTCCGTGGAGCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERLWSTL*SVELCS
Trigger: TGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACAG...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCTTCTGAGAGGGTCCTaGGGCGGGGGCTTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESLLRGS*GGGLLS
Trigger: GGAAAGCAAGCCCCCGCCCCAGGACCCTCTCAGAAG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTGTATTCCCGTTCTCTaGGCTTTTCAGCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGCIPVL*AFQPEG
Trigger: ACCTTCAGGCTGAAAAGCCCAGAGAACGGGAATACA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAACAGGCCACAGCGGTaGCAGGTTGTTGACCGAAGG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTNRPQR*QVVDRR
Trigger: CCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGGGTGGCTGGCTGGGATaGGCTGCACTCTGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLGGWLG*AALWKE
Trigger: CTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACC...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGCGGTCCTAACGAGTTaGAGAGTGCTGGATTATTTA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGAVLTS*RVLDYL
Trigger: TAAATAATCCAGCACTCTTCAACTCGTTAGGACCGC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGGTCAACGGCACAGGTaGGTACCTCCTCCTCTAAGA +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALGQRHR*VPPPLR
Trigger: TCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACC...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGGGTCAACGGCACAGGTaGGTACCTCCTCCTCTAAGA +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERGQRHR*VPPPLR
Trigger: TCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACC...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCCGCTCTGCAGCTGCTaGCAAAAGAAGTCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALPLCSC*QKKSSG
Trigger: ACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGG...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTCACTGAGGGATTCCTaGAGCTCCGCAAGCTTGTGG +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSLRDS*SSASLW
Trigger: CCACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGTCACTGAGGGATTCCTaGAGCTCCGCAAGCTTGTGG +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALSLRDS*SSASLW
Trigger: CCACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGA...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCACTTCCACTGCTCTGCTaGAGGGCTGGCTTGCACCCT +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSLPLLC*RAGLHP
Trigger: AGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAG...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACTTCCACTGCTCTGCTaGAGGGCTGGCTTGCACCCT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRLPLLC*RAGLHP
Trigger: AGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTGCGTGGACATTCTTTaGAATGGCTTTCACAGAGAG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGCVDIL*NGFHRE
Trigger: CTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAGTAGTACGTCTGCTTaGACTGGGAGCACCTCAGCG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTSSTSA*TGSTSA
Trigger: CGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCACTGGCTGGGATGGGCTaGACTCTGGAAAGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSLAGMG*TLERGR
Trigger: CCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAG...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCTGGCTGGGATGGGCTaGACTCTGGAAAGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESLAGMG*TLERGR
Trigger: CCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGTTTCTGTAACTCTGTaGAACAGCAGTCTCTGCTGT +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGVSVTL*NSSLCC
Trigger: ACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAAC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAAGTCCTCTGGTGTCTaGATGTGGGCAACCACGCCA +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTKSSGV*MWATTP
Trigger: TGGCGTGGTTGCCCACATCCAGACACCAGAGGACTT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTGGCCAAGGGAACACTaGCTGTGTGCATACTGCTGC +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERWPREH*LCAYCC
Trigger: GCAGCAGTATGCACACAGCCAGTGTTCCCTTGGCCA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTTTCTGACATTTCACTaGGGATGGCGTAGAACAAGG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGFLTFH*GWRRTR
Trigger: CCTTGTTCTACGCCATCCCCAGTGAAATGTCAGAAA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGGTGGCTGGCTGGGATaGGCTGCACTCTGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESGGWLG*AALWKE
Trigger: CTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCAAACAGAAGGGCCTTaGCAGCTGCAACACAGCCTT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTQTEGP*QLQHSL
Trigger: AAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCAAACAGAAGGGCCTTaGCAGCTGCAACACAGCCTT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALQTEGP*QLQHSL
Trigger: AAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTG...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCCACCACTCTCACTGTaGCCATCCTGTTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTPPLSL*PSCSVP
Trigger: TGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCACCACGCCGTTCGCGGTaGTTTCCACAACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSPRRSR*FPQLWL
Trigger: AAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGG...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAACGTGGGCCTTCCTCTaGAGCACATCCACGGCTTGT +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSTWAFL*STSTAC
Trigger: ACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGT...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACTGTGGTCCACACTCTaGTCCGTGGAGCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRLWSTL*SVELCS
Trigger: TGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACAG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTCCATTGTCTTCCACTaGTCTGCTGAAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSIVFH*SAEGLA
Trigger: AGCCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGTGGGTTTCCTGTTGGTaGCGGCTTCCTGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALWVSCW*RLPVSF
Trigger: AAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCA...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCTACAGATGGTGCTGTaGGAAGACCAGTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTLQMVL*EDQSLL
Trigger: GAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCTGGCTTGCACCCTGTaGCTGTCGATCTGCTTATGT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTLACTL*LSICLC
Trigger: ACATAAGCAGATCGACAGCCACAGGGTGCAAGCCAG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGGGATGGGCTGCACTCTaGAAAGAGGCAGGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLGWAAL*KEAGFR
Trigger: TCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCC...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACTGGGCTTTTCAGCCTaGAGGTGGGGTGGTTATGCT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRLGFSA*RWGGYA
Trigger: AGCATAACCACCCCACCTTCAGGCTGAAAAGCCCAG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTCTCCATGGTTTTCTTaGGTTGGAGACTTCTCAAAT +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGSPWFS*VGDFSN
Trigger: ATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCAAACAGAAGGGCCTTaGCAGCTGCAACACAGCCTT +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLQTEGP*QLQHSL
Trigger: AAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGGTCAACGGCACAGGTaGGTACCTCCTCCTCTAAGA +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESGQRHR*VPPPLR
Trigger: TCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCCGCTCTGCAGCTGCTaGCAAAAGAAGTCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESPLCSC*QKKSSG
Trigger: ACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTCACTGAGGGATTCCTaGAGCTCCGCAAGCTTGTGG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESSLRDS*SSASLW
Trigger: CCACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCCACCACTCTCACTGTaGCCATCCTGTTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLPPLSL*PSCSVP
Trigger: TGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCCACGTCCTTTTCTTTaGTGGCAAAGCCCGAGTCTA +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALPRPFL*WQSPSL
Trigger: TAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGG...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTTGGTAAGATCTCCTTaGCTAGAGCCCGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERLVRSP*LEPGTS
Trigger: ACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCCCACAACACATGCTTaGAATCTTGCTGTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTPTTHA*NLAVAS
Trigger: AGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCAGTAGTACGTCTGCTTaGACTGGGAGCACCTCAGCG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESSSTSA*TGSTSA
Trigger: CGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACT...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTTCAGGCACCACATTTaGATATGTCTCTTTCAAGCT +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGFRHHI*ICLFQA
Trigger: AGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGTCCAACGTCCTCCAATaGACTGTGGTCCACACTCTG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLSNVLQ*TVVHTL
Trigger: CAGAGTGTGGACCACAGTGCATTGGAGGACGTTGGA...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCTGTGTGCATACTGCTaGCTTTATCTGCCACGTCCT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTLCAYC*LYLPRP
Trigger: AGGACGTGGCAGATAAAGGCAGCAGTATGCACACAG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTGTGTGCATACTGCTaGCTTTATCTGCCACGTCCT +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERLCAYC*LYLPRP
Trigger: AGGACGTGGCAGATAAAGGCAGCAGTATGCACACAG...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCACGGGACTGTACATCATaGAGACCACCACATCCACGG +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSRDCTS*RPPHPR
Trigger: CCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCG...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACGGGACTGTACATCATaGAGACCACCACATCCACGG +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRRDCTS*RPPHPR
Trigger: CCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGGAGCCCCACAACACATaGTTGAAATCTTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHEREPHNT*LKSCCG
Trigger: GCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTC...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAGAAGTGAGGTTTTCTaGCAGGCCACACATCACCAG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTRSEVF*QATHHQ
Trigger: CTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCACTCTTCACTTCAATaGCCTTTGTTTCAAATGGTG +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGHSSLQ*PLFQMV
Trigger: CACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCCACGGCTTGTACTATaGCTCTGTTCCAGGTCTGAT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTPRLVL*LCSRSD
Trigger: ATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTATTTCCACCAGCACATaGTCCAGCTGCTTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTISTST*SSCFPE
Trigger: CTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAAT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAAAGTCCTCTGGTGTCTaGATGTGGGCAACCACGCCA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRKSSGV*MWATTP
Trigger: TGGCGTGGTTGCCCACATCCAGACACCAGAGGACTT...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCACGTCCCCAATGGTTaGATAAAAGTCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTHVPNG*IKVRAW
Trigger: CCACGCTCTGACTTTTATCCAACCATTGGGGACGTG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATGGCCAAGGGAACACTaGCTGTGTGCATACTGCTGC +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRWPREH*LCAYCC
Trigger: GCAGCAGTATGCACACAGCCAGTGTTCCCTTGGCCA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGTCCACAACTCTGGCTTaGAGTTTGAGCCCCACAACA +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALSTTLA*SLSPTT
Trigger: TGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGA...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTCCACAACTCTGGCTTaGAGTTTGAGCCCCACAACA +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSTTLA*SLSPTT
Trigger: TGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTTCCACAACTCTGGCTTaGAGTTTGAGCCCCACAACA +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTSTTLA*SLSPTT
Trigger: TGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGA...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGGATGGGCTGCACTCTaGAAAGAGGCAGGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSGWAAL*KEAGFR
Trigger: TCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCC...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGCAGCTCCAGGTGGCTaGCTGGGATGGGCTGCACTC +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFAAPGG*LGWAAL
Trigger: GAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTCACTCTGGTTCAGCATaGCATTTCTCAGCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTHSGSA*HFSAAP
Trigger: TGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTG...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCGGACATTCTTTGAAATaGCTTTCACAGAGAGAACCA +
Preference number: 4 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGGHSLK*LSQREP
Trigger: TGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCC...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
3UTR CAA 72 bp GTGATGAGAAAGCATCTAACTAGGCCCTTGCTGGCTTaGAGCCTGAGGTCTTGCCTCATGCTGCTCATGGCT +
Preference number: 4 (lower is better)
Translates to: VMRKHLTRPLLA*SLRSCLMLLMA
Trigger: AGCCATGAGCAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTTTCTCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGTGCTACAGGACTTCTaGGAGGGTCCTGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGVLQDF*EGPGAG
Trigger: CCCCGCCCCAGGACCCTCTCAGAAGTCCTGTAGCAC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGACAACAGCAGGGTTTaGAGAGACCACCGAACTGTC +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRDNSRV*RDHRTV
Trigger: GACAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGACAACAGCAGGGTTTaGAGAGACCACCGAACTGTC +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSDNSRV*RDHRTV
Trigger: GACAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTC...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCCCGCTCTGCAGCTGCTaGCAAAAGAAGTCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIPLCSC*QKKSSG
Trigger: ACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGG...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGTACCATCTCTTTCATaGCACACACAGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTVPSLS*HTQLLE
Trigger: CTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTAC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGTACCATCTCTTTCATaGCACACACAGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALVPSLS*HTQLLE
Trigger: CTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTAC...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCCACCACTCTCACTGTaGCCATCCTGTTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESPPLSL*PSCSVP
Trigger: TGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCCACGTCCTTTTCTTTaGTGGCAAAGCCCGAGTCTA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLPRPFL*WQSPSL
Trigger: TAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGAAGGTGGGGTGGTTATaGTGTGCTACAGGACTTCTG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLKVGWL*CATGLL
Trigger: CAGAAGTCCTGTAGCACAGCATAACCACCCCACCTT...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAAAGGGCCTTGACAGCTaGAACACAGCCTTCACTCCA +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSKGLDS*NTAFTP
Trigger: TGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTT...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAAAGGGCCTTGACAGCTaGAACACAGCCTTCACTCCA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRKGLDS*NTAFTP
Trigger: TGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTT...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCATCCATTGTCTTCCACTaGTCTGCTGAAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSSIVFH*SAEGLA
Trigger: AGCCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGA...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAGCTCCATCACTAACTaGGAACAGCTTCCATTCAGC +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTSSITN*EQLPFS
Trigger: GCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGAGCTCCATCACTAACTaGGAACAGCTTCCATTCAGC +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALSSITN*EQLPFS
Trigger: GCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCT...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGAGCTCCATCACTAACTaGGAACAGCTTCCATTCAGC +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSSITN*EQLPFS
Trigger: GCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCT...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGAGAAGTGAGGTTTTCTaGCAGGCCACACATCACCAG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLRSEVF*QATHHQ
Trigger: CTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCT...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCCTGAAGGTGGGGTaGTTATGCTGTGCTACAGGA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRSLKVG*LCCATG
Trigger: TCCTGTAGCACAGCATAACCACCCCACCTTCAGGCT...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGTGTATTCCCGTTCTCTaGGCTTTTCAGCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALCIPVL*AFQPEG
Trigger: ACCTTCAGGCTGAAAAGCCCAGAGAACGGGAATACA...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACTACAGATGGTGCTGTaGGAAGACCAGTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRLQMVL*EDQSLL
Trigger: GAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCTACAGATGGTGCTGTaGGAAGACCAGTCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESLQMVL*EDQSLL
Trigger: GAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATCAATGTACAGGACGTaGGCCTTCCTCTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRSMYRT*AFLCST
Trigger: TGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCATCAATGTACAGGACGTaGGCCTTCCTCTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSSMYRT*AFLCST
Trigger: TGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGA...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCAAGTCCTCTGGTGTCTaGATGTGGGCAACCACGCCA +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIKSSGV*MWATTP
Trigger: TGGCGTGGTTGCCCACATCCAGACACCAGAGGACTT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGGAGCGTGGAATCACATaGCCACAGTATTCACTGAGG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLERGIT*PQYSLR
Trigger: CCTCAGTGAATACTGTGGCCATGTGATTCCACGCTC...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTGGCCAAGGGAACACTaGCTGTGTGCATACTGCTGC +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIWPREH*LCAYCC
Trigger: GCAGCAGTATGCACACAGCCAGTGTTCCCTTGGCCA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGACGTTTCCAGAACAATaGCCCGGTACCAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALTFPEQ*PGTRSH
Trigger: ATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGT...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCGCAGCTCCAGGTGGCTaGCTGGGATGGGCTGCACTC +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISAAPGG*LGWAAL
Trigger: GAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGC...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGAGCATCTAATGATCTaGAAGGGCAGCTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPREHLMI*KGSSRW
Trigger: CCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCACTCTGGTTCAGCATaGCATTTCTCAGCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLHSGSA*HFSAAP
Trigger: TGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGGCAGTCTCTGCTGTGTaGTATCTCTTTAGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERAVSAV*YLFSGS
Trigger: GCTTCCACTAAAGAGATACCACACAGCAGAGACTGC...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCAGTCTCTGCTGTGTaGTATCTCTTTAGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTAVSAV*YLFSGS
Trigger: GCTTCCACTAAAGAGATACCACACAGCAGAGACTGC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGGCTCTGTTCCAGGTCTaGTCAACTGTGTATTTGGCA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLALFQV*STVYLA
Trigger: TGCCAAATACACAGTTGATCAGACCTGGAACAGAGC...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCCACGTCCTTTTCTTTaGTGGCAAAGCCCGAGTCTA +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESPRPFL*WQSPSL
Trigger: TAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTTGGTAAGATCTCCTTaGCTAGAGCCCGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESLVRSP*LEPGTS
Trigger: ACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCCCACAACACATGCTTaGAATCTTGCTGTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESPTTHA*NLAVAS
Trigger: AGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTCGATCTGCTTATGTTaGTTAGCAGGTCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSICLC*LAGLLI
Trigger: GATGAGCAGACCTGCTAATCAACATAAGCAGATCGA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCTTCTCTTGATTTTCTaGCATTTCACTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALLLLIF*HFTGDG
Trigger: GCCATCCCCAGTGAAATGTCAGAAAATCAAGAGAAG...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTTGCGTGGACATTCTTTaGAATGGCTTTCACAGAGAG +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTCVDIL*NGFHRE
Trigger: CTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCA...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCAAGGTGGGGTGGTTATaGTGTGCTACAGGACTTCTG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESKVGWL*CATGLL
Trigger: CAGAAGTCCTGTAGCACAGCATAACCACCCCACCTT...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAAAGGTGGGGTGGTTATaGTGTGCTACAGGACTTCTG +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSKVGWL*CATGLL
Trigger: CAGAAGTCCTGTAGCACAGCATAACCACCCCACCTT...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCAAGGGCCTTGACAGCTaGAACACAGCCTTCACTCCA +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIKGLDS*NTAFTP
Trigger: TGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCCAACGTCCTCCAATaGACTGTGGTCCACACTCTG +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISNVLQ*TVVHTL
Trigger: CAGAGTGTGGACCACAGTGCATTGGAGGACGTTGGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACTGTGTGCATACTGCTaGCTTTATCTGCCACGTCCT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRLCAYC*LYLPRP
Trigger: AGGACGTGGCAGATAAAGGCAGCAGTATGCACACAG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGAGCCCCACAACACATaGTTGAAATCTTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSEPHNT*LKSCCG
Trigger: GCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTC...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGAGCCCCACAACACATaGTTGAAATCTTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPREPHNT*LKSCCG
Trigger: GCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCCATTGTCTTCCACTaGTCTGCTGAAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISIVFH*SAEGLA
Trigger: AGCCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACCACGGCTTGTACTATaGCTCTGTTCCAGGTCTGAT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRPRLVL*LCSRSD
Trigger: ATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCATTTCCACCAGCACATaGTCCAGCTGCTTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESISTST*SSCFPE
Trigger: CTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAAT...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTCAAAGTCAGCACTTTaGGGATCAGGGCATTTCTGT +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSKSAL*GSGHFC
Trigger: ACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTTCAAAGTCAGCACTTTaGGGATCAGGGCATTTCTGT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTSKSAL*GSGHFC
Trigger: ACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGA...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACACGTCCCCAATGGTTaGATAAAAGTCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRHVPNG*IKVRAW
Trigger: CCACGCTCTGACTTTTATCCAACCATTGGGGACGTG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATCCACAACTCTGGCTTaGAGTTTGAGCCCCACAACA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRSTTLA*SLSPTT
Trigger: TGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGAGCATCTAATGATCTaGAAGGGCAGCTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIEHLMI*KGSSRW
Trigger: CCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCACTCTGGTTCAGCATaGCATTTCTCAGCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESHSGSA*HFSAAP
Trigger: TGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGGCGGTCCTAACGAGTTaGAGAGTGCTGGATTATTTA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLAVLTS*RVLDYL
Trigger: TAAATAATCCAGCACTCTTCAACTCGTTAGGACCGC...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGCTCTGTTCCAGGTCTaGTCAACTGTGTATTTGGCA +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRALFQV*STVYLA
Trigger: TGCCAAATACACAGTTGATCAGACCTGGAACAGAGC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTTGGTAAGATCTCCTTaGCTAGAGCCCGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHILVRSP*LEPGTS
Trigger: ACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCCCCACAACACATGCTTaGAATCTTGCTGTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIPTTHA*NLAVAS
Trigger: AGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGG...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCCACGCCGTTCGCGGTaGTTTCCACAACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFPRRSR*FPQLWL
Trigger: AAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCTTCCACTGCTCTGCTaGAGGGCTGGCTTGCACCCT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISLPLLC*RAGLHP
Trigger: AGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGTGCGTGGACATTCTTTaGAATGGCTTTCACAGAGAG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLCVDIL*NGFHRE
Trigger: CTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCA...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGAGCTTGTTCAAACTTTaGTGTACAGGCCTACAGATG +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSLFKL*CTGLQM
Trigger: CATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCT...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCTGTGGTCCACACTCTaGTCCGTGGAGCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFLWSTL*SVELCS
Trigger: TGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACAG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGACTGCTGCCTTTATCTaGCACGTCCTTTTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALTAAFI*HVLFFD
Trigger: ATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGT...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGGAACACTGGCTGTGTaGATACTGCTGCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESGTLAV*ILLPLS
Trigger: AGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGGAACACTGGCTGTGTaGATACTGCTGCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSGTLAV*ILLPLS
Trigger: AGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCC...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGGAACACTGGCTGTGTaGATACTGCTGCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRGTLAV*ILLPLS
Trigger: AGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCACCTTAAGACCAACTaGTCTCTGATGAGCACATCA +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLHLKTN*SLMSTS
Trigger: TGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGATCAACTGTGTATTTaGCAACACAAACTTCCCCCT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTDQLCI*QHKLPP
Trigger: AGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGACACACAGCACTTTATaGCAGAAGGAGGAAACAAGT +
Preference number: 4 (lower is better)
Translates to: SYRPHLSMQHLASSSSALTHSTL*QKEETS
Trigger: ACTTGTTTCCTCCTTCTGCCATAAAGTGCTGTGTGT...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGTCAAAGTCAGCACTTTaGGGATCAGGGCATTTCTGT +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLSKSAL*GSGHFC
Trigger: ACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGA...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCCACGTCCCCAATGGTTaGATAAAAGTCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIHVPNG*IKVRAW
Trigger: CCACGCTCTGACTTTTATCCAACCATTGGGGACGTG...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTTGAAATCTTGCTGTaGCCTCTTTTGTCCAATGCT +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERLEILL*PLLSNA
Trigger: AGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAG...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAGAGAGAACCACACTCTaGTTCAGCATGGCATTTCTC +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSERTTL*FSMAFL
Trigger: GAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTC...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCCGCTCTGCAGCTGCTaGCAAAAGAAGTCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFPLCSC*QKKSSG
Trigger: ACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGTACCATCTCTTTCATaGCACACACAGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIVPSLS*HTQLLE
Trigger: CTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTAC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCCACGCCGTTCGCGGTaGTTTCCACAACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISPRRSR*FPQLWL
Trigger: AAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTCGATCTGCTTATGTTaGTTAGCAGGTCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESSICLC*LAGLLI
Trigger: GATGAGCAGACCTGCTAATCAACATAAGCAGATCGA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGACTTCTCTTGATTTTCTaGCATTTCACTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRLLLIF*HFTGDG
Trigger: GCCATCCCCAGTGAAATGTCAGAAAATCAAGAGAAG...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGACACACAGCTTCTCTTaGTTTTCTGACATTTCACTG +
Preference number: 4 (lower is better)
Translates to: RAGTVAQRKRRACLVHERTHSFS*FSDISL
Trigger: CAGTGAAATGTCAGAAAATCAAGAGAAGCTGTGTGT...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATGCGTGGACATTCTTTaGAATGGCTTTCACAGAGAG +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRCVDIL*NGFHRE
Trigger: CTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGAGCTTGTTCAAACTTTaGTGTACAGGCCTACAGATG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLSLFKL*CTGLQM
Trigger: CATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCT...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTTTCAGGCACCACATTTaGATATGTCTCTTTCAAGCT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTFRHHI*ICLFQA
Trigger: AGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAA...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCACGTGGGCCTTCCTCTaGAGCACATCCACGGCTTGT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISTWAFL*STSTAC
Trigger: ACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGACTGCTGCCTTTATCTaGCACGTCCTTTTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLTAAFI*HVLFFD
Trigger: ATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGT...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCACCTTAAGACCAACTaGTCTCTGATGAGCACATCA +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESHLKTN*SLMSTS
Trigger: TGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCAGCTCCATCACTAACTaGGAACAGCTTCCATTCAGC +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISSITN*EQLPFS
Trigger: GCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGTTTCTGTAACTCTGTaGAACAGCAGTCTCTGCTGT +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESVSVTL*NSSLCC
Trigger: ACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAAC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTGTATTCCCGTTCTCTaGGCTTTTCAGCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHICIPVL*AFQPEG
Trigger: ACCTTCAGGCTGAAAAGCCCAGAGAACGGGAATACA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAAACAGGCCACAGCGGTaGCAGGTTGTTGACCGAAGG +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGNRPQR*QVVDRR
Trigger: CCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGACACACAGCACTTTATaGCAGAAGGAGGAAACAAGT +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLTHSTL*QKEETS
Trigger: ACTTGTTTCCTCCTTCTGCCATAAAGTGCTGTGTGT...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCACAAAAGAAGTCCTCTaGTGTCTGGATGTGGGCAAC +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHITKEVL*CLDVGN
Trigger: GTTGCCCACATCCAGACACCAGAGGACTTCTTTTGT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTTTCTGACATTTCACTaGGGATGGCGTAGAACAAGG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESFLTFH*GWRRTR
Trigger: CCTTGTTCTACGCCATCCCCAGTGAAATGTCAGAAA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATTTCTGACATTTCACTaGGGATGGCGTAGAACAAGG +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRFLTFH*GWRRTR
Trigger: CCTTGTTCTACGCCATCCCCAGTGAAATGTCAGAAA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCACGTTTCCAGAACAATaGCCCGGTACCAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHITFPEQ*PGTRSH
Trigger: ATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGGATGGGCTGCACTCTaGAAAGAGGCAGGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFGWAAL*KEAGFR
Trigger: TCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGAGAGAACCACACTCTaGTTCAGCATGGCATTTCTC +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIERTTL*FSMAFL
Trigger: GAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGACATTCTTTGAAATaGCTTTCACAGAGAGAACCA +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTGHSLK*LSQREP
Trigger: TGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGTCAACTGACACTGCGTaGACATTCTTTGAAATGGCT +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLSTDTA*TFFEMA
Trigger: AGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGA...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTCACTGAGGGATTCCTaGAGCTCCGCAAGCTTGTGG +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISSLRDS*SSASLW
Trigger: CCACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAAAGTCTTTTCAGACTaGGAATCTCAAAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTKVFSD*ESQSSH
Trigger: ATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCGATCTGCTTATGTTaGTTAGCAGGTCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISICLC*LAGLLI
Trigger: GATGAGCAGACCTGCTAATCAACATAAGCAGATCGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGGGGTGGTTATGCTGTaGTACAGGACTTCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFGVVML*YRTSER
Trigger: CCTCTCAGAAGTCCTGTAGCACAGCATAACCACCCC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCAGTAGTACGTCTGCTTaGACTGGGAGCACCTCAGCG +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISSSTSA*TGSTSA
Trigger: CGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCGGGACTGTACATCATaGAGACCACCACATCCACGG +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISRDCTS*RPPHPR
Trigger: CCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTTGGGTTTCCTGTTGGTaGCGGCTTCCTGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFWVSCW*RLPVSF
Trigger: AAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCA...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCACTCTTCACTTCAATaGCCTTTGTTTCAAATGGTG +
Preference number: 4 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLHSSLQ*PLFQMV
Trigger: CACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCAAAGTCAGCACTTTaGGGATCAGGGCATTTCTGT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISKSAL*GSGHFC
Trigger: ACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAAAGTCCTCTGGTGTCTaGATGTGGGCAACCACGCCA +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGKSSGV*MWATTP
Trigger: TGGCGTGGTTGCCCACATCCAGACACCAGAGGACTT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGGATGGGCTGCACTCTaGAAAGAGGCAGGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGGWAAL*KEAGFR
Trigger: TCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGACAACAGCAGGGTTTaGAGAGACCACCGAACTGTC +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGDNSRV*RDHRTV
Trigger: GACAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATCTCCATGGTTTTCTTaGGTTGGAGACTTCTCAAAT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRSPWFS*VGDFSN
Trigger: ATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTCTCCATGGTTTTCTTaGGTTGGAGACTTCTCAAAT +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESSPWFS*VGDFSN
Trigger: ATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCAAACAGAAGGGCCTTaGCAGCTGCAACACAGCCTT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISQTEGP*QLQHSL
Trigger: AAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCACACACAGCTTCTCTTaGTTTTCTGACATTTCACTG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESTHSFS*FSDISL
Trigger: CAGTGAAATGTCAGAAAATCAAGAGAAGCTGTGTGT...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGAACATTTTTCAACTaGCACTGCGTGGACATTCTT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRRTFFN*HCVDIL
Trigger: AAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCT...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCGGGGTGGTTATGCTGTaGTACAGGACTTCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISGVVML*YRTSER
Trigger: CCTCTCAGAAGTCCTGTAGCACAGCATAACCACCCC...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATTCAGGCACCACATTTaGATATGTCTCTTTCAAGCT +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRFRHHI*ICLFQA
Trigger: AGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAAAGGGCCTTGACAGCTaGAACACAGCCTTCACTCCA +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGKGLDS*NTAFTP
Trigger: TGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTAGCACATGGTCCAGCTaGTTTCCTGAGCTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFSTWSS*FPELCR
Trigger: TCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCT...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTCCAACGTCCTCCAATaGACTGTGGTCCACACTCTG +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISSNVLQ*TVVHTL
Trigger: CAGAGTGTGGACCACAGTGCATTGGAGGACGTTGGA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCACTGCTGCCTTTATCTaGCACGTCCTTTTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHITAAFI*HVLFFD
Trigger: ATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTAGAAGTGAGGTTTTCTaGCAGGCCACACATCACCAG +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFRSEVF*QATHHQ
Trigger: CTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCT...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTGGGTTTCCTGTTGGTaGCGGCTTCCTGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISWVSCW*RLPVSF
Trigger: AAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAAACAGGCCACAGCGGTaGCAGGTTGTTGACCGAAGG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQNRPQR*QVVDRR
Trigger: CCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCACTCTTCACTTCAATaGCCTTTGTTTCAAATGGTG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESHSSLQ*PLFQMV
Trigger: CACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCCACGGCTTGTACTATaGCTCTGTTCCAGGTCTGAT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFPRLVL*LCSRSD
Trigger: ATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTACAACTTTGGAATTATaGGACAAAGTCTTTTCAGAC +
Preference number: 4 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTTTLEL*DKVFSD
Trigger: GTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGACTGGCTTGCACCCTGTaGCTGTCGATCTGCTTATGT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGLACTL*LSICLC
Trigger: ACATAAGCAGATCGACAGCCACAGGGTGCAAGCCAG...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCTGGCTTGCACCCTGTaGCTGTCGATCTGCTTATGT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISLACTL*LSICLC
Trigger: ACATAAGCAGATCGACAGCCACAGGGTGCAAGCCAG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCAACTGACACTGCGTaGACATTCTTTGAAATGGCT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISTDTA*TFFEMA
Trigger: AGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCTCTCCATGGTTTTCTTaGGTTGGAGACTTCTCAAAT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHISPWFS*VGDFSN
Trigger: ATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGA...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCACACACAGCTTCTCTTaGTTTTCTGACATTTCACTG +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHITHSFS*FSDISL
Trigger: CAGTGAAATGTCAGAAAATCAAGAGAAGCTGTGTGT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGATTCTCAGCTATATTaGTCATTCCGTTCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIDSQLY*SFRSQN
Trigger: GTTCTGAGAACGGAATGATCAATATAGCTGAGAATC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGAGCTTTTTCATCTCTGTaGATTTACTTTGGTTGGTTG +
Preference number: 4 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRAFSSL*IYFGWL
Trigger: CAACCAACCAAAGTAAATTCACAGAGATGAAAAAGC...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGCTTTTTCATCTCTGTaGATTTACTTTGGTTGGTTG +
Preference number: 4 (lower is better)
Translates to: ATSYPGKHATQKQGTKESAFSSL*IYFGWL
Trigger: CAACCAACCAAAGTAAATTCACAGAGATGAAAAAGC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCAAGGTGGGGTGGTTATaGTGTGCTACAGGACTTCTG +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISKVGWL*CATGLL
Trigger: CAGAAGTCCTGTAGCACAGCATAACCACCCCACCTT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCAGCACATGGTCCAGCTaGTTTCCTGAGCTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISSTWSS*FPELCR
Trigger: TCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCTGTGTGCATACTGCTaGCTTTATCTGCCACGTCCT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISLCAYC*LYLPRP
Trigger: AGGACGTGGCAGATAAAGGCAGCAGTATGCACACAG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGGAACACTGGCTGTGTaGATACTGCTGCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFGTLAV*ILLPLS
Trigger: AGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACGGGACTGTACATCATaGAGACCACCACATCCACGG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQRDCTS*RPPHPR
Trigger: CCGTGGATGTGGTGGTCTGCATGATGTACAGTCCCG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCGAGCCCCACAACACATaGTTGAAATCTTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISEPHNT*LKSCCG
Trigger: GCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTC...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGACCACGGCTTGTACTATaGCTCTGTTCCAGGTCTGAT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGPRLVL*LCSRSD
Trigger: ATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGG...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAATTTCCACCAGCACATaGTCCAGCTGCTTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGISTST*SSCFPE
Trigger: CTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAAT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATGGCCAAGGGAACACTaGCTGTGTGCATACTGCTGC +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQWPREH*LCAYCC
Trigger: GCAGCAGTATGCACACAGCCAGTGTTCCCTTGGCCA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTACGTTTCCAGAACAATaGCCCGGTACCAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFTFPEQ*PGTRSH
Trigger: ATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGT...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCACTCTGGTTCAGCATaGCATTTCTCAGCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISHSGSA*HFSAAP
Trigger: TGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGAGAGAACCACACTCTaGTTCAGCATGGCATTTCTC +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFERTTL*FSMAFL
Trigger: GAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGCAGTCTCTGCTGTGTaGTATCTCTTTAGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFAVSAV*YLFSGS
Trigger: GCTTCCACTAAAGAGATACCACACAGCAGAGACTGC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGACAACAGCAGGGTTTaGAGAGACCACCGAACTGTC +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQDNSRV*RDHRTV
Trigger: GACAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGCGGTCCTAACGAGTTaGAGAGTGCTGGATTATTTA +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFAVLTS*RVLDYL
Trigger: TAAATAATCCAGCACTCTTCAACTCGTTAGGACCGC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCAAAGTCTTTTCAGACTaGGAATCTCAAAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIKVFSD*ESQSSH
Trigger: ATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTT...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATCCAACGTCCTCCAATaGACTGTGGTCCACACTCTG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQSNVLQ*TVVHTL
Trigger: CAGAGTGTGGACCACAGTGCATTGGAGGACGTTGGA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCACCTTAAGACCAACTaGTCTCTGATGAGCACATCA +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFHLKTN*SLMSTS
Trigger: TGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTGTATTCCCGTTCTCTaGGCTTTTCAGCCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISCIPVL*AFQPEG
Trigger: ACCTTCAGGCTGAAAAGCCCAGAGAACGGGAATACA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATGGGTTTCCTGTTGGTaGCGGCTTCCTGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQWVSCW*RLPVSF
Trigger: AAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATCAATGTACAGGACGTaGGCCTTCCTCTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQSMYRT*AFLCST
Trigger: TGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAACAAAAGAAGTCCTCTaGTGTCTGGATGTGGGCAAC +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGTKEVL*CLDVGN
Trigger: GTTGCCCACATCCAGACACCAGAGGACTTCTTTTGT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTCGAGCTTCTATACTCAACAACTTTGGAATTATaGGACAAAGTCTTTTCAGAC +
Preference number: 4 (lower is better)
Translates to: QRKRRACLVHERLELLYSTTLEL*DKVFSD
Trigger: GTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGT...TGAGTATAGAAGCTCGAGCCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAACGTTTCCAGAACAATaGCCCGGTACCAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGTFPEQ*PGTRSH
Trigger: ATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGAGAGAACCACACTCTaGTTCAGCATGGCATTTCTC +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGERTTL*FSMAFL
Trigger: GAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCGCGGTCCTAACGAGTTaGAGAGTGCTGGATTATTTA +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISAVLTS*RVLDYL
Trigger: TAAATAATCCAGCACTCTTCAACTCGTTAGGACCGC...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATTGGTAAGATCTCCTTaGCTAGAGCCCGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQLVRSP*LEPGTS
Trigger: ACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCCTTCTCTTGATTTTCTaGCATTTCACTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISLLLIF*HFTGDG
Trigger: GCCATCCCCAGTGAAATGTCAGAAAATCAAGAGAAG...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAAGCACATGGTCCAGCTaGTTTCCTGAGCTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQSTWSS*FPELCR
Trigger: TCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAAGAAGTGAGGTTTTCTaGCAGGCCACACATCACCAG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQRSEVF*QATHHQ
Trigger: CTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGTTTCTGTAACTCTGTaGAACAGCAGTCTCTGCTGT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGVSVTL*NSSLCC
Trigger: ACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAAC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGAGCGTGGAATCACATaGCCACAGTATTCACTGAGG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQERGIT*PQYSLR
Trigger: CCTCAGTGAATACTGTGGCCATGTGATTCCACGCTC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACACGTCCCCAATGGTTaGATAAAAGTCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQHVPNG*IKVRAW
Trigger: CCACGCTCTGACTTTTATCCAACCATTGGGGACGTG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTAGAACATTTTTCAACTaGCACTGCGTGGACATTCTT +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFRTFFN*HCVDIL
Trigger: AAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCT...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCACTGCTGCCTTTATCTaGCACGTCCTTTTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISTAAFI*HVLFFD
Trigger: ATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGATCAACTGTGTATTTaGCAACACAAACTTCCCCCT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGDQLCI*QHKLPP
Trigger: AGGGGGAAGTTTGTGTTGCCAAATACACAGTTGATC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCACACACAGCACTTTATaGCAGAAGGAGGAAACAAGT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISTHSTL*QKEETS
Trigger: ACTTGTTTCCTCCTTCTGCCATAAAGTGCTGTGTGT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAACAAAAGAAGTCCTCTaGTGTCTGGATGTGGGCAAC +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQTKEVL*CLDVGN
Trigger: GTTGCCCACATCCAGACACCAGAGGACTTCTTTTGT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGACTTGAAATCTTGCTGTaGCCTCTTTTGTCCAATGCT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGLEILL*PLLSNA
Trigger: AGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAG...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACTTCTCTTGATTTTCTaGCATTTCACTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQLLLIF*HFTGDG
Trigger: GCCATCCCCAGTGAAATGTCAGAAAATCAAGAGAAG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGATTCTCAGCTATATTaGTCATTCCGTTCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGDSQLY*SFRSQN
Trigger: GTTCTGAGAACGGAATGATCAATATAGCTGAGAATC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTGCTTTTTCATCTCTGTaGATTTACTTTGGTTGGTTG +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFAFSSL*IYFGWL
Trigger: CAACCAACCAAAGTAAATTCACAGAGATGAAAAAGC...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTTCAGGCACCACATTTaGATATGTCTCTTTCAAGCT +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISFRHHI*ICLFQA
Trigger: AGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGTTTCTGTAACTCTGTaGAACAGCAGTCTCTGCTGT +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQVSVTL*NSSLCC
Trigger: ACAGCAGAGACTGCTGTTGCACAGAGTTACAGAAAC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATTTCTGACATTTCACTaGGGATGGCGTAGAACAAGG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQFLTFH*GWRRTR
Trigger: CCTTGTTCTACGCCATCCCCAGTGAAATGTCAGAAA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGGACATTCTTTGAAATaGCTTTCACAGAGAGAACCA +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGGHSLK*LSQREP
Trigger: TGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAAAAGTCTTTTCAGACTaGGAATCTCAAAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGKVFSD*ESQSSH
Trigger: ATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAGCTTTTTCATCTCTGTaGATTTACTTTGGTTGGTTG +
Preference number: 4 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGAFSSL*IYFGWL
Trigger: CAACCAACCAAAGTAAATTCACAGAGATGAAAAAGC...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTAAAATTAAATGGCTCTaGCATTTTACAAGTAGAGGC +
Preference number: 4 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFKIKWL*HFTSRG
Trigger: GCCTCTACTTGTAAAATGGCAGAGCCATTTAATTTT...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACTTGAAATCTTGCTGTaGCCTCTTTTGTCCAATGCT +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQLEILL*PLLSNA
Trigger: AGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAATCAACTGACACTGCGTaGACATTCTTTGAAATGGCT +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQSTDTA*TFFEMA
Trigger: AGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGA...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGATTCTCAGCTATATTaGTCATTCCGTTCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQDSQLY*SFRSQN
Trigger: GTTCTGAGAACGGAATGATCAATATAGCTGAGAATC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR GCA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCAAAATTAAATGGCTCTaGCATTTTACAAGTAGAGGC +
Preference number: 4 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISKIKWL*HFTSRG
Trigger: GCCTCTACTTGTAAAATGGCAGAGCCATTTAATTTT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACACTCTTCACTTCAATaGCCTTTGTTTCAAATGGTG +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQHSSLQ*PLFQMV
Trigger: CACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAGGACATTCTTTGAAATaGCTTTCACAGAGAGAACCA +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQGHSLK*LSQREP
Trigger: TGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCC...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR TCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAAAAGTCTTTTCAGACTaGGAATCTCAAAGTTCCCAT +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQKVFSD*ESQSSH
Trigger: ATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CCA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAAACAACTTTGGAATTATaGGACAAAGTCTTTTCAGAC +
Preference number: 4 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQTTLEL*DKVFSD
Trigger: GTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGT...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp ACCAGTCTCTCCTCTGGCAGGCCGTGGAGCAGTAGTACGTCTGCTTaGACTGGGAGCACCTCAGCGACCCAAACAGGCCACAGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: TSLSSGRPWSSSTSA*TGSTSATQTGHSGG
Trigger: GCCACCGCTGTGGCCTGTTTGGGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp TACAGATGGTGCTGTGGGAAGACCAGTCTCTCCTCTGGCAGGCCGTaGAGCAGTAGTACGTCTGCTTGCACTGGGAGCACCTCAGCGACC +
Preference number: 5 (lower is better)
Translates to: YRWCCGKTSLSSGRP*SSSTSACTGSTSAT
Trigger: GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp CTTCCATTCAGCTCCATCGGCCCCTCTAGTGAGCATCTAATGATCTaGAAGGGCAGCTCCAGGTGGCTGGCTGGGATGGGCTGCACTCTG +
Preference number: 5 (lower is better)
Translates to: LPFSSIGPSSEHLMI*KGSSRWLAGMGCTL
Trigger: CAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGGGGCCGATGGAGCTGAATGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCAGCACATCCACGGCTaGTACTATGGCTCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGQHIHG*YYGSVP
Trigger: TGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 90 bp TTGATGGCAAAGCCCGAGTCTATGAGAGCTTTAGAAGCGCTGACGTaGGGAGCCACCGACTTGTCGATGAGCTCCACCAGGGCCCTGGTC +
Preference number: 5 (lower is better)
Translates to: LMAKPESMRALEALT*GATDLSMSSTRALV
Trigger: GACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp CTCGTCAACAGTGAACTCCACCCACGTCCACTCCAACGCCTCTGCTaGACCTTCAATGGCCAAGGGAACACTGGCTGTGTGCATACTGCT +
Preference number: 5 (lower is better)
Translates to: LVNSELHPRPLQRLC*TFNGQGNTGCVHTA
Trigger: AGCAGTATGCACACAGCCAGTGTTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGCTTCCTGTCTCCTTaGGACCCACCGACTTCTCCA +
Preference number: 5 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTGFLSP*DPPTSP
Trigger: TGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 90 bp TTGGTGGCGGCTTCCTGTCTCCTTTGGACCCACCGACTTCTCCATTaGCAACAGCAGGGTTTGAAGAGACCACCGAACTGTCCTCCTGAC +
Preference number: 5 (lower is better)
Translates to: LVAASCLLWTHRLLH*QQQGLKRPPNCPPD
Trigger: GTCAGGAGGACAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTCAATGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCCGCCACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp TGTCACAATCTTGCTCTCAACTGTCACTCTTCCAACGTCCTCCAATaGACTGTGGTCCACACTCTGCTCCGTGGAGCTCTGCTCACCGGG +
Preference number: 5 (lower is better)
Translates to: CHNLALNCHSSNVLQ*TVVHTLLRGALLTG
Trigger: CCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACAGTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTTCCTGGGGCGGGGGCTaGCTTTCCTTCTTCTCAAAA +
Preference number: 5 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTSWGGG*LSFFSK
Trigger: TTTTGAGAAGAAGGAAAGCAAGCCCCCGCCCCAGGA...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGGGCTTCCTGTCTCCTTaGGACCCACCGACTTCTCCA +
Preference number: 5 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLGFLSP*DPPTSP
Trigger: TGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCC...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCCTGCGTGGACATTCTTaGAAATGGCTTTCACAGAGA +
Preference number: 5 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGLRGHS*KWLSQR
Trigger: TCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAG...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 90 bp GCTGAAGGGCTGGCTTGCACCCTGTGGCTGTCGATCTGCTTATGTTaGTTAGCAGGTCTGCTCATCAGTGAGTCCTGTGGTGAACCACAC +
Preference number: 5 (lower is better)
Translates to: AEGLACTLWLSICLC*LAGLLISESCGEPH
Trigger: GTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAGCCAGCCCTTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp CCGGGTTTCACTCCATACCCCATTTCCACCAGCACATGGTCCAGCTaGTTTCCTGAGCTCTGTAGAACAAGGTCAACGGCACAGGTGAGT +
Preference number: 5 (lower is better)
Translates to: PGFTPYPISTSTWSS*FPELCRTRSTAQVS
Trigger: ACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp CTCTGCTCACCGGGTTTCACTCCATACCCCATTTCCACCAGCACATaGTCCAGCTGCTTTCCTGAGCTCTGTAGAACAAGGTCAACGGCA +
Preference number: 5 (lower is better)
Translates to: LCSPGFTPYPISTST*SSCFPELCRTRSTA
Trigger: TGCCGTTGACCTTGTTCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGGCTTCCTGTCTCCTTaGGACCCACCGACTTCTCCA +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESGFLSP*DPPTSP
Trigger: TGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCAAGCTTGTTCAAACTTaGCTGTACAGGCCTACAGAT +
Preference number: 5 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGKLVQT*LYRPTD
Trigger: ATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCTT...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGTCAAACAGAAGGGCCTaGACAGCTGCAACACAGCCT +
Preference number: 5 (lower is better)
Translates to: RAGTVAQRKRRACLVHERSNRRA*TAATQP
Trigger: AGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGA...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTTCAAACAGAAGGGCCTaGACAGCTGCAACACAGCCT +
Preference number: 5 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTSNRRA*TAATQP
Trigger: AGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGA...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCTTGGTAAGATCTCCTaGACTAGAGCCCGGTACCAG +
Preference number: 5 (lower is better)
Translates to: RAGTVAQRKRRACLVHERLGKIS*TRARYQ
Trigger: CTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAG...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCCCCACAACACATGCTaGAAATCTTGCTGTGGCCTC +
Preference number: 5 (lower is better)
Translates to: RAGTVAQRKRRACLVHERPHNTC*KSCCGL
Trigger: GAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGG...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTCCTGGGGCGGGGGCTaGCTTTCCTTCTTCTCAAAA +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESSWGGG*LSFFSK
Trigger: TTTTGAGAAGAAGGAAAGCAAGCCCCCGCCCCAGGA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCAGCACATCCACGGCTaGTACTATGGCTCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLQHIHG*YYGSVP
Trigger: TGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCTTGGTAAGATCTCCTaGACTAGAGCCCGGTACCAG +
Preference number: 5 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLLGKIS*TRARYQ
Trigger: CTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 90 bp TTGGATAAAAGTCAGAGCGTGGAATCACATGGCCACAGTATTCACTaGGGGATTCCTGAAGCTCCGCAAGCTTGTGGCCGCTCTGCAGCT +
Preference number: 5 (lower is better)
Translates to: LDKSQSVESHGHSIH*GIPEAPQACGRSAA
Trigger: AGCTGCAGAGCGGCCACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp AACGCCTCTGCTGGACCTTCAATGGCCAAGGGAACACTGGCTGTGTaGATACTGCTGCCTTTATCTGCCACGTCCTTTTCTTTGATGGCA +
Preference number: 5 (lower is better)
Translates to: NASAGPSMAKGTLAV*ILLPLSATSFSLMA
Trigger: TGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp ACACTCTGGTTCAGCATGGCATTTCTCAGCAGCTCCATCACTAACTaGGAACAGCTTCCATTCAGCTCCATCGGCCCCTCTAGTGAGCAT +
Preference number: 5 (lower is better)
Translates to: TLWFSMAFLSSSITN*EQLPFSSIGPSSEH
Trigger: ATGCTCACTAGAGGGGCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGGCGGTCCTAACGAGTaGAAGAGTGCTGGATTATTT +
Preference number: 5 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTGGPNE*KSAGLF
Trigger: AAATAATCCAGCACTCTTCAACTCGTTAGGACCGCC...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AGTGCACATCCTTGGAGTGAGCCACAAGTTACCCAGGAAAACATGCCACCCAGATCAAACAGAAGGGCCTaGACAGCTGCAACACAGCCT +
Preference number: 5 (lower is better)
Translates to: SAHPWSEPQVTQENMPPRSNRRA*TAATQP
Trigger: AGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGA...TCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGCTCACTCCAAGGATGTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCTTGGTAAGATCTCCTaGACTAGAGCCCGGTACCAG +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESLGKIS*TRARYQ
Trigger: CTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CGCATCGGGACGAGGCAGCAGATGACAGGGAGCGTCCCACTGGCAAAGAAAGGCTTTGCTGCTATAGTCTaGTTAACTGGCAATTCCATT +
Preference number: 5 (lower is better)
Translates to: RIGTRQQMTGSVPLAKKGFAAIV*LTGNSI
Trigger: AATGGAATTGCCAGTTAACAAGACTATAGCAGCAAA...GCCTTTCTTTGCCAGTGGGACGCTCCCTGTCATCTGCTGCCTCGTCCCGATGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp AGTACCTCCTCCTCTAAGATGTCCATGACCTTGACAGAGCAGAACTaGTCAAACAGAAGGGCCTTGACAGCTGCAACACAGCCTTCACTC +
Preference number: 5 (lower is better)
Translates to: STSSSKMSMTLTEQN*SNRRALTAATQPSL
Trigger: GAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp TTTGCTGCTATAGTCTTGTTAACTGGCAATTCCATTGTCTTCCACTaGTCTGCTGAAGGGCTGGCTTGCACCCTGTGGCTGTCGATCTGC +
Preference number: 5 (lower is better)
Translates to: FAAIVLLTGNSIVFH*SAEGLACTLWLSIC
Trigger: GCAGATCGACAGCCACAGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp TATTATCTTCAAGCTTGTTCAAACTTTGCTGTACAGGCCTACAGATaGTGCTGTGGGAAGACCAGTCTCTCCTCTGGCAGGCCGTGGAGC +
Preference number: 5 (lower is better)
Translates to: YYLQACSNFAVQAYR*CCGKTSLSSGRPWS
Trigger: GCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCTTGAAGATAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCCTTGGTAAGATCTCCTaGACTAGAGCCCGGTACCAG +
Preference number: 5 (lower is better)
Translates to: SKMKSQAIQAQLREAVHILGKIS*TRARYQ
Trigger: CTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAG...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCGGCGGTCCTAACGAGTaGAAGAGTGCTGGATTATTT +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESGGPNE*KSAGLF
Trigger: AAATAATCCAGCACTCTTCAACTCGTTAGGACCGCC...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp CAACCACGCCACAGAACTCATCACCCACATTCAAAGTCAGCACTTTaGGGATCAGGGCATTTCTGTCTGTCACAATCTTGCTCTCAACTG +
Preference number: 5 (lower is better)
Translates to: QPRHRTHHPHSKSAL*GSGHFCLSQSCSQL
Trigger: CAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp ACCACTGATCATCCTCTGAGAACTGAGCACAGCACACGTCCCCAATaGTTGGATAAAAGTCAGAGCGTGGAATCACATGGCCACAGTATT +
Preference number: 5 (lower is better)
Translates to: TTDHPLRTEHSTRPQ*LDKSQSVESHGHSI
Trigger: AATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAGAGGATGATCAGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCGGCTTCCTGTCTCCTTaGGACCCACCGACTTCTCCA +
Preference number: 5 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISGFLSP*DPPTSP
Trigger: TGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCC...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGGCGGTCCTAACGAGTaGAAGAGTGCTGGATTATTT +
Preference number: 5 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIGGPNE*KSAGLF
Trigger: AAATAATCCAGCACTCTTCAACTCGTTAGGACCGCC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTGCATGGTTTTCTTGAGTaGGAGACTTCTCAAATCAGA +
Preference number: 5 (lower is better)
Translates to: SYRPHLSMQHLASSSSALHGFLE*ETSQIR
Trigger: TCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATG...CAGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AGAGCTGGGACTGTAGCTCAGAGGAAGAGGAGAGCTTGCCTCGTACATGAGAGGCATGGTTTTCTTGAGTaGGAGACTTCTCAAATCAGA +
Preference number: 5 (lower is better)
Translates to: RAGTVAQRKRRACLVHERHGFLE*ETSQIR
Trigger: TCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATG...CCTCTCATGTACGAGGCAAGCTCTCCTCTTCCTCTGAGCTACAGTCCCAGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp GGTGATTTCCACAACTCTGGCTTGGAGTTTGAGCCCCACAACACATaGTTGAAATCTTGCTGTGGCCTCTTTTGTCCAATGCTTGTTTGG +
Preference number: 5 (lower is better)
Translates to: GDFHNSGLEFEPHNT*LKSCCGLFCPMLVW
Trigger: CCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp GCGTGGACATTCTTTGAAATGGCTTTCACAGAGAGAACCACACTCTaGTTCAGCATGGCATTTCTCAGCAGCTCCATCACTAACTGCGAA +
Preference number: 5 (lower is better)
Translates to: AWTFFEMAFTERTTL*FSMAFLSSSITNCE
Trigger: TTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTCCTGGGGCGGGGGCTaGCTTTCCTTCTTCTCAAAA +
Preference number: 5 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISSWGGG*LSFFSK
Trigger: TTTTGAGAAGAAGGAAAGCAAGCCCCCGCCCCAGGA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGATCCTGGGGCGGGGGCTaGCTTTCCTTCTTCTCAAAA +
Preference number: 5 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGSWGGG*LSFFSK
Trigger: TTTTGAGAAGAAGGAAAGCAAGCCCCCGCCCCAGGA...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp TCCAAGATGAAAAGCCAAGCCATCCAAGCACAGCTGAGAGAAGCAGTGCACATCGCAAAAAGTTGTTCTTaGTATTCCCGTTCTCTGGGC +
Preference number: 5 (lower is better)
Translates to: SKMKSQAIQAQLREAVHIAKSCS*YSRSLG
Trigger: GCCCAGAGAACGGGAATACAAAGAACAACTTTTTGC...GATGTGCACTGCTTCTCTCAGCTGTGCTTGGATGGCTTGGCTTTTCATCTTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCAAGCTTGTTCAAACTTaGCTGTACAGGCCTACAGAT +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESKLVQT*LYRPTD
Trigger: ATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCTT...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGCATGGTTTTCTTGAGTaGGAGACTTCTCAAATCAGA +
Preference number: 5 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLHGFLE*ETSQIR
Trigger: TCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATG...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCAGCACATCCACGGCTaGTACTATGGCTCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFQHIHG*YYGSVP
Trigger: TGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCCCCACAACACATGCTaGAAATCTTGCTGTGGCCTC +
Preference number: 5 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFPHNTC*KSCCGL
Trigger: GAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CAGCTACCGACCACACCTATCCATGCAACACCTAGCCTCCTCCTCTTCAGCACTAGATTCTCAGCTATATaGATCATTCCGTTCTCAGAA +
Preference number: 5 (lower is better)
Translates to: QLPTTPIHATPSLLLFSTRFSAI*IIPFSE
Trigger: TTCTGAGAACGGAATGATCAATATAGCTGAGAATCT...AGTGCTGAAGAGGAGGAGGCTAGGTGTTGCATGGATAGGTGTGGTCGGTAGCTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCCATGGTTTTCTTGAGTaGGAGACTTCTCAAATCAGA +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESHGFLE*ETSQIR
Trigger: TCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATG...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGACAGCACATCCACGGCTaGTACTATGGCTCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGQHIHG*YYGSVP
Trigger: TGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTG...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGACCCCACAACACATGCTaGAAATCTTGCTGTGGCCTC +
Preference number: 5 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGPHNTC*KSCCGL
Trigger: GAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGG...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AAGCATCTAACTAGGCCCTTGCTGGCTTTGAGCCTGAGGTCTTGCCTCATGCTGTTTGCTGCTATAGTCTaGTTAACTGGCAATTCCATT +
Preference number: 5 (lower is better)
Translates to: KHLTRPLLALSLRSCLMLFAAIV*LTGNSI
Trigger: AATGGAATTGCCAGTTAACAAGACTATAGCAGCAAA...CAGCATGAGGCAAGACCTCAGGCTCAAAGCCAGCAAGGGCCTAGTTAGATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp GCCACAAGTTACCCAGGAAAACATGCCACCCAGAAGCAAGGAACCAAAGAGAGCTTTGCTGCTATAGTCTaGTTAACTGGCAATTCCATT +
Preference number: 5 (lower is better)
Translates to: ATSYPGKHATQKQGTKESFAAIV*LTGNSI
Trigger: AATGGAATTGCCAGTTAACAAGACTATAGCAGCAAA...GCTCTCTTTGGTTCCTTGCTTCTGGGTGGCATGTTTTCCTGGGTAACTTGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCGGCGGTCCTAACGAGTaGAAGAGTGCTGGATTATTT +
Preference number: 5 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISGGPNE*KSAGLF
Trigger: AAATAATCCAGCACTCTTCAACTCGTTAGGACCGCC...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp CTTTATTGCCTGAATCAGGACAAACTTAACTGTCTGAGACACATCAACATCCAACCCCACAACACATGCTaGAAATCTTGCTGTGGCCTC +
Preference number: 5 (lower is better)
Translates to: LYCLNQDKLNCLRHINIQPHNTC*KSCCGL
Trigger: GAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGG...TTGGATGTTGATGTGTCTCAGACAGTTAAGTTTGTCCTGATTCAGGCAATAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTCTGCGTGGACATTCTTaGAAATGGCTTTCACAGAGA +
Preference number: 5 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFLRGHS*KWLSQR
Trigger: TCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAG...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp ATTCCTAATGATGGCTTCACGCCTGCCAGCACACAATTTAGAGCTTaGATCGGCAAATCCAACAACTTTGGAATTATGGGACAAAGTCTT +
Preference number: 5 (lower is better)
Translates to: IPNDGFTPASTQFRA*IGKSNNFGIMGQSL
Trigger: AAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAGGCGTGAAGCCATCATTAGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGACTGCGTGGACATTCTTaGAAATGGCTTTCACAGAGA +
Preference number: 5 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGLRGHS*KWLSQR
Trigger: TCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAG...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCAAGCTTGTTCAAACTTaGCTGTACAGGCCTACAGAT +
Preference number: 5 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISKLVQT*LYRPTD
Trigger: ATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCTT...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp TTTGTTTCAAATGGTGATTTATTATCTTCAAGCTTGTTCAAACTTTaGTGTACAGGCCTACAGATGGTGCTGTGGGAAGACCAGTCTCTC +
Preference number: 5 (lower is better)
Translates to: FVSNGDLLSSSLFKL*CTGLQMVLWEDQSL
Trigger: GAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAGTTTGAACAAGCTTGAAGATAATAAATCACCATTTGAAACAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 90 bp AACTTCCCCCTTAACAGGAAGATAACCATCTTCAGGCACCACATTTaGATATGTCTCTTTCAAGCTTGTAGAGAGTTGGTTCATGTTTTC +
Preference number: 5 (lower is better)
Translates to: NFPLNRKITIFRHHI*ICLFQACRELVHVF
Trigger: GAAAACATGAACCAACTCTCTACAAGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAGGGGGAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 90 bp TTTGATTTTTCAGGAGTCACATTACTGCTGGGCTTAGTTTTTACTTaGTTAGGAGGTGAACTGTTTCCAAGACTTAATGGTGACACTGGG +
Preference number: 5 (lower is better)
Translates to: FDFSGVTLLLGLVFT*LGGELFPRLNGDTG
Trigger: CCCAGTGTCACCATTAAGTCTTGGAAACAGTTCACCTCCTAACCAAGTAAAAACTAAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACACACAATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTAGATTCTCAGCTATATaGATCATTCCGTTCTCAGAA +
Preference number: 5 (lower is better)
Translates to: THNSFSGLAFAVSFFPVFRFSAI*IIPFSE
Trigger: TTCTGAGAACGGAATGATCAATATAGCTGAGAATCT...AAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATTGTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 90 bp GCAAATCCAACAACTTTGGAATTATGGGACAAAGTCTTTTCAGACTaGGAATCTCAAAGTTCCCATAATCGACATATCCAACCAGGACAG +
Preference number: 5 (lower is better)
Translates to: ANPTTLELWDKVFSD*ESQSSHNRHIQPGQ
Trigger: CTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp AATTCTTTCTCAGGTCTGGCGTTTGCTGTCTCTTTCTTCCCAGTGTTTATTTCCTTTGCTGCTATAGTCTaGTTAACTGGCAATTCCATT +
Preference number: 5 (lower is better)
Translates to: NSFSGLAFAVSFFPVFISFAAIV*LTGNSI
Trigger: AATGGAATTGCCAGTTAACAAGACTATAGCAGCAAA...GGAAATAAACACTGGGAAGAAAGAGACAGCAAACGCCAGACCTGAGAAAGAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS-3UTR CAA 90 bp ACCGCGCCTAGCTCATACATGAATCTCTTCTGTAAGATTCATGTATTTCGTGGAAGATTCTCAGCTATATaGATCATTCCGTTCTCAGAA +
Preference number: 5 (lower is better)
Translates to: TAPSSYMNLFCKIHVFRGRFSAI*IIPFSE
Trigger: TTCTGAGAACGGAATGATCAATATAGCTGAGAATCT...TCCACGAAATACATGAATCTTACAGAAGAGATTCATGTATGAGCTAGGCGCGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp TGGGAGCACCTCAGCGACCCAAACAGGCCACAGCGGTaGCAGGTTGTTGACCGAAGGGGCGGTCCTAACGAG +
Preference number: 6 (lower is better)
Translates to: WEHLSDPNRPQR*QVVDRRGGPNE
Trigger: CTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTGGGTCGCTGAGGTGCTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp TCCTCTGGCAGGCCGTGGAGCAGTAGTACGTCTGCTTaGACTGGGAGCACCTCAGCGACCCAAACAGGCCAC +
Preference number: 6 (lower is better)
Translates to: SSGRPWSSSTSA*TGSTSATQTGH
Trigger: GTGGCCTGTTTGGGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp AGCTCCATCGGCCCCTCTAGTGAGCATCTAATGATCTaGAAGGGCAGCTCCAGGTGGCTGGCTGGGATGGGC +
Preference number: 6 (lower is better)
Translates to: SSIGPSSEHLMI*KGSSRWLAGMG
Trigger: GCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGGGGCCGATGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 72 bp GGCCAGAACCGAGGCGCGGTACCACTGATCATCCTCTaGGAACTGAGCACAGCACACGTCCCCAATGGTTGG +
Preference number: 6 (lower is better)
Translates to: GQNRGAVPLIIL*ELSTAHVPNGW
Trigger: CCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAGAGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 72 bp TCATGCAGACCACCACATCCACGGTCTCGTCAACAGTaGACTCCACCCACGTCCACTCCAACGCCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: SCRPPHPRSRQQ*TPPTSTPTPLL
Trigger: CAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTTGACGAGACCGTGGATGTGGTGGTCTGCATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp AGAGCAGAACTGCTCAAACAGAAGGGCCTTGACAGCTaGAACACAGCCTTCACTCCACTCGCCCGCAGTGGG +
Preference number: 6 (lower is better)
Translates to: RAELLKQKGLDS*NTAFTPLARSG
Trigger: CCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp AGTGAACTCCACCCACGTCCACTCCAACGCCTCTGCTaGACCTTCAATGGCCAAGGGAACACTGGCTGTGTG +
Preference number: 6 (lower is better)
Translates to: SELHPRPLQRLC*TFNGQGNTGCV
Trigger: CACACAGCCAGTGTTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp GAGCTCCACGCCCACGCCGTTCGCGGTGATTTCCACAACTCTGGCTaGGAGTTTGAGCCCCACAACACATGCTTGAAATCTTGCTGTGGC +
Preference number: 6 (lower is better)
Translates to: ELHAHAVRGDFHNSG*EFEPHNTCLKSCCG
Trigger: GCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 72 bp GGAATCACATGGCCACAGTATTCACTGAGGGATTCCTaGAGCTCCGCAAGCTTGTGGCCGCTCTGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: GITWPQYSLRDS*SSASLWPLCSC
Trigger: GCAGCTGCAGAGCGGCCACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp AATGCACTGTGGTCCACACTCTGCTCCGTGGAGCTCTaGTCACCGGGTTTCACTCCATACCCCATTTCCACC +
Preference number: 6 (lower is better)
Translates to: NALWSTLCSVEL*SPGFTPYPIST
Trigger: GGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACAGTGCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp AACAGTGAACTCCACCCACGTCCACTCCAACGCCTCTaGTGGACCTTCAATGGCCAAGGGAACACTGGCTGT +
Preference number: 6 (lower is better)
Translates to: NSELHPRPLQRL*WTFNGQGNTGC
Trigger: ACAGCCAGTGTTCCCTTGGCCATTGAAGGTCCAGCAGAGGCGTTGGAGTGGACGTGGGTGGAGTTCACTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp ATTTGTGTACTTAGCACAGCACGCGTCGCCGGTCCGTaGTCTGTAGGCTGGCTGGCCCTTCTGAGCATTACA +
Preference number: 6 (lower is better)
Translates to: ICVLSTARVAGP*SVGWLALLSIT
Trigger: TGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp ACTGGGTTTCCTGTTGGTGGCGGCTTCCTGTCTCCTTaGGACCCACCGACTTCTCCATTGACAACAGCAGGG +
Preference number: 6 (lower is better)
Translates to: TGFPVGGGFLSP*DPPTSPLTTAG
Trigger: CCCTGCTGTTGTCAATGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp CTTGCTCTCAACTGTCACTCTTCCAACGTCCTCCAATaGACTGTGGTCCACACTCTGCTCCGTGGAGCTCTG +
Preference number: 6 (lower is better)
Translates to: LALNCHSSNVLQ*TVVHTLLRGAL
Trigger: CAGAGCTCCACGGAGCAGAGTGTGGACCACAGTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp CAGGACGTGGGCCTTCCTCTGCAGCACATCCACGGCTaGTACTATGGCTCTGTTCCAGGTCTGATCAACTGT +
Preference number: 6 (lower is better)
Translates to: QDVGLPLQHIHG*YYGSVPGLINC
Trigger: ACAGTTGATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp ACCTTGACAGAGCAGAACTGCTCAAACAGAAGGGCCTaGACAGCTGCAACACAGCCTTCACTCCACTCGCCC +
Preference number: 6 (lower is better)
Translates to: TLTEQNCSNRRA*TAATQPSLHSP
Trigger: GGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp CCGGGTTTCACTCCATACCCCATTTCCACCAGCACATaGTCCAGCTGCTTTCCTGAGCTCTGTAGAACAAGG +
Preference number: 6 (lower is better)
Translates to: PGFTPYPISTST*SSCFPELCRTR
Trigger: CCTTGTTCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp GGCTTCCTGTCTCCTTTGGACCCACCGACTTCTCCATaGACAACAGCAGGGTTTGAAGAGACCACCGAACTG +
Preference number: 6 (lower is better)
Translates to: GFLSPLDPPTSP*TTAGFEETTEL
Trigger: CAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTCAATGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp GCCCACGCCGTTCGCGGTGATTTCCACAACTCTGGCTaGGAGTTTGAGCCCCACAACACATGCTTGAAATCT +
Preference number: 6 (lower is better)
Translates to: AHAVRGDFHNSG*EFEPHNTCLKS
Trigger: AGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 72 bp GCTTCCTGTCTCCTTTGGACCCACCGACTTCTCCATTaGCAACAGCAGGGTTTGAAGAGACCACCGAACTGT +
Preference number: 6 (lower is better)
Translates to: ASCLLWTHRLLH*QQQGLKRPPNC
Trigger: ACAGTTCGGTGGTCTCTTCAAACCCTGCTGTTGTCAATGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp ACTCCATACCCCATTTCCACCAGCACATGGTCCAGCTaGTTTCCTGAGCTCTGTAGAACAAGGTCAACGGCA +
Preference number: 6 (lower is better)
Translates to: TPYPISTSTWSS*FPELCRTRSTA
Trigger: TGCCGTTGACCTTGTTCTACAGAGCTCAGGAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp GGGAACACTGGCTGTGTGCATACTGCTGCCTTTATCTaGCACGTCCTTTTCTTTGATGGCAAAGCCCGAGTC +
Preference number: 6 (lower is better)
Translates to: GNTGCVHTAAFI*HVLFFDGKARV
Trigger: GACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp GGGCCTTCCTCTGCAGCACATCCACGGCTTGTACTATaGCTCTGTTCCAGGTCTGATCAACTGTGTATTTGG +
Preference number: 6 (lower is better)
Translates to: GPSSAAHPRLVL*LCSRSDQLCIW
Trigger: CCAAATACACAGTTGATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp GCAATTCCATTGTCTTCCACTGCTCTGCTGAAGGGCTaGCTTGCACCCTGTGGCTGTCGATCTGCTTATGTT +
Preference number: 6 (lower is better)
Translates to: AIPLSSTALLKG*LAPCGCRSAYV
Trigger: AACATAAGCAGATCGACAGCCACAGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp TGTTTCCAAGACTTAATGGTGACACTGGGTTTCCTGTaGGTGGCGGCTTCCTGTCTCCTTTGGACCCACCGA +
Preference number: 6 (lower is better)
Translates to: CFQDLMVTLGFL*VAASCLLWTHR
Trigger: TCGGTGGGTCCAAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCAGTGTCACCATTAAGTCTTGGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp GAGGTGAACTGTTTCCAAGACTTAATGGTGACACTGGGTTTCCTGTaGGTGGCGGCTTCCTGTCTCCTTTGGACCCACCGACTTCTCCAT +
Preference number: 6 (lower is better)
Translates to: EVNCFQDLMVTLGFL*VAASCLLWTHRLLH
Trigger: ATGGAGAAGTCGGTGGGTCCAAAGGAGACAGGAAGCCGCCACCAACAGGAAACCCAGTGTCACCATTAAGTCTTGGAAACAGTTCACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp GTCAATGTACAGGACGTGGGCCTTCCTCTGCAGCACATCCACGGCTaGTACTATGGCTCTGTTCCAGGTCTGATCAACTGTGTATTTGGC +
Preference number: 6 (lower is better)
Translates to: VNVQDVGLPLQHIHG*YYGSVPGLINCVFG
Trigger: GCCAAATACACAGTTGATCAGACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp TCAACGGCACAGGTGAGTACCTCCTCCTCTAAGATGTCCATGACCTaGACAGAGCAGAACTGCTCAAACAGAAGGGCCTTGACAGCTGCA +
Preference number: 6 (lower is better)
Translates to: STAQVSTSSSKMSMT*TEQNCSNRRALTAA
Trigger: TGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp ATAGTCTTGTTAACTGGCAATTCCATTGTCTTCCACTaGTCTGCTGAAGGGCTGGCTTGCACCCTGTGGCTG +
Preference number: 6 (lower is better)
Translates to: IVLLTGNSIVFH*SAEGLACTLWL
Trigger: CAGCCACAGGGTGCAAGCCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp TGGTTATGCTGTGCTACAGGACTTCTGAGAGGGTCCTaGGGCGGGGGCTTGCTTTCCTTCTTCTCAAAATTA +
Preference number: 6 (lower is better)
Translates to: WLCCATGLLRGS*GGGLLSFFSKL
Trigger: TAATTTTGAGAAGAAGGAAAGCAAGCCCCCGCCCCAGGACCCTCTCAGAAGTCCTGTAGCACAGCATAACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp CATCCTCTGAGAACTGAGCACAGCACACGTCCCCAATaGTTGGATAAAAGTCAGAGCGTGGAATCACATGGC +
Preference number: 6 (lower is better)
Translates to: HPLRTEHSTRPQ*LDKSQSVESHG
Trigger: GCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAGAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp CAGGTGAGTACCTCCTCCTCTAAGATGTCCATGACCTaGACAGAGCAGAACTGCTCAAACAGAAGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: QVSTSSSKMSMT*TEQNCSNRRAL
Trigger: CAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp GCACACGTCCCCAATGGTTGGATAAAAGTCAGAGCGTaGAATCACATGGCCACAGTATTCACTGAGGGATTC +
Preference number: 6 (lower is better)
Translates to: AHVPNGWIKVRA*NHMATVFTEGF
Trigger: GAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp GCAACCACGCCACAGAACTCATCACCCACATTCAAAGTCAGCACTTaGGGGATCAGGGCATTTCTGTCTGTCACAATCTTGCTCTCAACT +
Preference number: 6 (lower is better)
Translates to: ATTPQNSSPTFKVST*GIRAFLSVTILLST
Trigger: AGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp GATTTCCACAACTCTGGCTTGGAGTTTGAGCCCCACAACACATGCTaGAAATCTTGCTGTGGCCTCTTTTGTCCAATGCTTGTTTGGGGG +
Preference number: 6 (lower is better)
Translates to: DFHNSGLEFEPHNTC*KSCCGLFCPMLVWG
Trigger: CCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 72 bp GGGGGCTGTATATCTACTAGCCAGCACTGCATCCCCTaGAATGGAAGTAGTAAGAACTGTGGTAATATCGCC +
Preference number: 6 (lower is better)
Translates to: GGCISTSQHCIP*NGSSKNCGNIA
Trigger: GGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAGATATACAGCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp CTTTGGGGATCAGGGCATTTCTGTCTGTCACAATCTTaGTCTCAACTGTCACTCTTCCAACGTCCTCCAATG +
Preference number: 6 (lower is better)
Translates to: LWGSGHFCLSQS*SQLSLFQRPPM
Trigger: CATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp TTGGAGTTTGAGCCCCACAACACATGCTTGAAATCTTaGTGTGGCCTCTTTTGTCCAATGCTTGTTTGGGGG +
Preference number: 6 (lower is better)
Translates to: LEFEPHNTCLKS*CGLFCPMLVWG
Trigger: CCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp CACAACTCTGGCTTGGAGTTTGAGCCCCACAACACATaGTTGAAATCTTGCTGTGGCCTCTTTTGTCCAATG +
Preference number: 6 (lower is better)
Translates to: HNSGLEFEPHNT*LKSCCGLFCPM
Trigger: CATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp GAAATCTTGCTGTGGCCTCTTTTGTCCAATGCTTGTTaGGGGGCTGTATATCTACTAGCCAGCACTGCATCC +
Preference number: 6 (lower is better)
Translates to: EILLWPLLSNAC*GAVYLLASTAS
Trigger: GGATGCAGTGCTGGCTAGTAGATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp GATGGCTTCACGCCTGCCAGCACACAATTTAGAGCTTaGATCGGCAAATCCAACAACTTTGGAATTATGGGA +
Preference number: 6 (lower is better)
Translates to: DGFTPASTQFRA*IGKSNNFGIMG
Trigger: TCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAGGCGTGAAGCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp CACAGAACTCATCACCCACATTCAAAGTCAGCACTTTaGGGATCAGGGCATTTCTGTCTGTCACAATCTTGC +
Preference number: 6 (lower is better)
Translates to: HRTHHPHSKSAL*GSGHFCLSQSC
Trigger: GCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp ACTTTGGGGATCAGGGCATTTCTGTCTGTCACAATCTaGCTCTCAACTGTCACTCTTCCAACGTCCTCCAAT +
Preference number: 6 (lower is better)
Translates to: TLGIRAFLSVTI*LSTVTLPTSSN
Trigger: ATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp CCACAGAACTCATCACCCACATTCAAAGTCAGCACTTaGGGGATCAGGGCATTTCTGTCTGTCACAATCTTG +
Preference number: 6 (lower is better)
Translates to: PQNSSPTFKVST*GIRAFLSVTIL
Trigger: CAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp AACTCTGGCTTGGAGTTTGAGCCCCACAACACATGCTaGAAATCTTGCTGTGGCCTCTTTTGTCCAATGCTT +
Preference number: 6 (lower is better)
Translates to: NSGLEFEPHNTC*KSCCGLFCPML
Trigger: AAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp TTCTTTGAAATGGCTTTCACAGAGAGAACCACACTCTaGTTCAGCATGGCATTTCTCAGCAGCTCCATCACT +
Preference number: 6 (lower is better)
Translates to: FFEMAFTERTTL*FSMAFLSSSIT
Trigger: AGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp AACAAGGCTGGGCTTATGATCTCTAGTACATTTGCTGCTATAGTCTaGTTAACTGGCAATTCCATTGTCTTCCACTGCTCTGCTGAAGGG +
Preference number: 6 (lower is better)
Translates to: NKAGLMISSTFAAIV*LTGNSIVFHCSAEG
Trigger: CCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS TCA 72 bp ACAGCAGGGTTTGAAGAGACCACCGAACTGTCCTCCTaGCTAGCTAAATACTGTTTGTTTTGTTCACAAAGC +
Preference number: 6 (lower is better)
Translates to: TAGFEETTELSS*LAKYCLFCSQS
Trigger: GCTTTGTGAACAAAACAAACAGTATTTAGCTAGTCAGGAGGACAGTTCGGTGGTCTCTTCAAACCCTGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp CCACAACACATGCTTGAAATCTTGCTGTGGCCTCTTTaGTCCAATGCTTGTTTGGGGGCTGTATATCTACTA +
Preference number: 6 (lower is better)
Translates to: PQHMLEILLWPL*SNACLGAVYLL
Trigger: TAGTAGATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 90 bp CTTGAATTCAGTAACTGTACCCTTTATCTCCATGGTTTTCTTGAGTaGGAGACTTCTCAAATCAGAGAACATTACTCTCTCAGCACCCGC +
Preference number: 6 (lower is better)
Translates to: LEFSNCTLYLHGFLE*ETSQIREHYSLSTR
Trigger: GCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGGGTACAGTTACTGAATTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CCA 72 bp TCAGGAGTCACATTACTGCTGGGCTTAGTTTTTACTTaGTTAGGAGGTGAACTGTTTCCAAGACTTAATGGT +
Preference number: 6 (lower is better)
Translates to: SGVTLLLGLVFT*LGGELFPRLNG
Trigger: ACCATTAAGTCTTGGAAACAGTTCACCTCCTAACCAAGTAAAAACTAAGCCCAGCAGTAATGTGACTCCTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp GGGCTTATGATCTCTAGTACATTTGCTGCTATAGTCTaGTTAACTGGCAATTCCATTGTCTTCCACTGCTCT +
Preference number: 6 (lower is better)
Translates to: GLMISSTFAAIV*LTGNSIVFHCS
Trigger: AGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS GCA 72 bp CTTAACAGGAAGATAACCATCTTCAGGCACCACATTTaGATATGTCTCTTTCAAGCTTGTAGAGAGTTGGTT +
Preference number: 6 (lower is better)
Translates to: LNRKITIFRHHI*ICLFQACRELV
Trigger: AACCAACTCTCTACAAGCTTGAAAGAGACATATGCAAATGTGGTGCCTGAAGATGGTTATCTTCCTGTTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp GGGGACAGTCAACCTCACTCTTCACTTCAATGGCCTTaGTTTCAAATGGTGATTTATTATCTTCAAGCTTGT +
Preference number: 6 (lower is better)
Translates to: GDSQPHSSLQWP*FQMVIYYLQAC
Trigger: ACAAGCTTGAAGATAATAAATCACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTGAGGTTGACTGTCCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8
CDS CAA 72 bp AGTAACTGTACCCTTTATCTCCATGGTTTTCTTGAGTaGGAGACTTCTCAAATCAGAGAACATTACTCTCTC +
Preference number: 6 (lower is better)
Translates to: SNCTLYLHGFLE*ETSQIREHYSL
Trigger: GAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAGGGTACAGTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078723.11
ENSMUST00000111604.2
ENSMUST00000111606.8
ENSMUST00000121249.8