Pregenerated sensors for TDPOZ9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094328Ensembl transcript IDs: ENSMUST00000178458.2, ENSMUST00000180746.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATCCACTTACAGGTGGCTaGAAACTCCTCTGTGTGTGC | + |
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Preference number: 2 (lower is better) Translates to: TGGTARILHKHPQLSLANPLTGG*KLLCVC Trigger: GCACACACAGAGGAGTTTTCAGCCACCTGTAAGTGG...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATTTAAAGATTTGTCTATaGAACTGTTTGTGGCTATGG | + |
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Preference number: 2 (lower is better) Translates to: TGGTARILHKHPQLSLANLKICL*NCLWLW Trigger: CCATAGCCACAAACAGTTGCATAGACAAATCTTTAA...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCAAAATAGACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCAATTTCTCCTTTCCTCTaGCCACGGTCATCTGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: FQNRRNIFACVDPQTLLPISPFL*PRSSVL Trigger: CAGAACAGATGACCGTGGTCAGAGGAAAGGAGAAAT...TGGGAGAAGTGTTTGTGGGTCAACACATGCAAAAATGTTTCGTCTATTTTGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATACTAGACCAATGTTGTaGTTAGTTGCTCTTGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: TGGTARILHKHPQLSLANTRPML*LVALGR Trigger: TCTTCCAAGAGCAACTAACAACAACATTGGTCTAGT...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCAAAATAGACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCAAACACTAGACCAATGTaGTTGTTAGTTGCTCTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: FQNRRNIFACVDPQTLLPNTRPM*LLVALG Trigger: TCCAAGAGCAACTAACAACAACATTGGTCTAGTGTT...TGGGAGAAGTGTTTGTGGGTCAACACATGCAAAAATGTTTCGTCTATTTTGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| 3UTR-3UTR CAA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAAAACACTAGACCAATGTaGTTGTTAGTTGCTCTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKNTRPM*LLVALG Trigger: TCCAAGAGCAACTAACAACAACATTGGTCTAGTGTT...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | GATTTCTCCTTTCCTCTGACCACGGTCATCTGTTCTGCTCAGTCCACTGCAGATGCCATGGAGTGGCTGTaGAGGTATGGTGCCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: DFSFPLTTVICSAQSTADAMEWL*RYGAFP Trigger: GGGGAAGGCACCATACCTCCACAGCCACTCCATGGC...ATCTGCAGTGGACTGAGCAGAACAGATGACCGTGGTCAGAGGAAAGGAGAAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATTCACAGGCCATGGAGTaGCTGTGGAGGTATGGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANSQAME*LWRYGA Trigger: GGCACCATACCTCCACAGCCACTCCATGGCCTGTGA...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATGCCACCAAGTGGGGATaGGACTCCACCATTGACTTC | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANATKWG*DSTIDF Trigger: GAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGC...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATGCTTCAGCCACCAAGTaGGGATGGGACTCCACCATT | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANASATK*GWDSTI Trigger: AATGGTGGAGTCCCATCCCCACTTGGTGGCTGAAGC...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | GATTTCTCCTTTCCTCTGACCACGGTCATCTGTTCTGCTCAGTCCACTGCAGATGCTGTGGAGGTATGGTaGCTTCCCCGTGTAGATGAA | + |
|
Preference number: 4 (lower is better) Translates to: DFSFPLTTVICSAQSTADAVEVW*LPRVDE Trigger: TTCATCTACACGGGGAAGGCACCATACCTCCACAGC...ATCTGCAGTGGACTGAGCAGAACAGATGACCGTGGTCAGAGGAAAGGAGAAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | GATTTCTCCTTTCCTCTGACCACGGTCATCTGTTCTGCTCAGTCCACTGCAGATGAACTTTGCCCAAACTaGGCTCTGCAGATGGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: DFSFPLTTVICSAQSTADELCPN*ALQMAE Trigger: CTCAGCCATCTGCAGAGCCCAGTTTGGGCAAAGTTC...ATCTGCAGTGGACTGAGCAGAACAGATGACCGTGGTCAGAGGAAAGGAGAAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATGAACTTTGCCCAAACTaGGCTCTGCAGATGGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANELCPN*ALQMAE Trigger: CTCAGCCATCTGCAGAGCCCAGTTTGGGCAAAGTTC...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATCCAGAACTTGAACTTTaGCCAAACTGGGCTCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANPELEL*PNWALQ Trigger: CTGCAGAGCCCAGTTTGGGCAAAGTTCAAGTTCTGG...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR TCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATGGCTCTGCAGATGGCTaGGCAAAACTAAGTAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANGSADG*AKLSKL Trigger: CAGTTTACTTAGTTTTGCTCAGCCATCTGCAGAGCC...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | GATTTCTCCTTTCCTCTGACCACGGTCATCTGTTCTGCTCAGTCCACTGCAGATTCACAGAGAGGTTCCTaGAGAAAGCATCCTCACACA | + |
|
Preference number: 4 (lower is better) Translates to: DFSFPLTTVICSAQSTADSQRGS*RKHPHT Trigger: TGTGTGAGGATGCTTTCTGCAGGAACCTCTCTGTGA...ATCTGCAGTGGACTGAGCAGAACAGATGACCGTGGTCAGAGGAAAGGAGAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | ATCTGTTCTGCTCAGTCCACTGCAGATAGGTTTCTTCAAAGAAACTCAGTTAGCTCACAGGCCATGGAGTaGCTGTGGAGGTATGGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: ICSAQSTADRFLQRNSVSSQAME*LWRYGA Trigger: GGCACCATACCTCCACAGCCACTCCATGGCCTGTGA...GCTAACTGAGTTTCTTTGAAGAAACCTATCTGCAGTGGACTGAGCAGAACAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR TCA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATGAGGGAGAAACTTTTTaGATCCACTCTGTTCATATG | + |
|
Preference number: 4 (lower is better) Translates to: TGGTARILHKHPQLSLANEGETF*IHSVHM Trigger: CATATGAACAGAGTGGATTCAAAAAGTTTCTCCCTC...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | CGATTTAAATCCTCATCCACCATGATGCCTTTCCCCAGATTTACTGTAAATTCTGCCCAAACTGGGCTCTaGAGATGGCTGAGCAAAACT | + |
|
Preference number: 4 (lower is better) Translates to: RFKSSSTMMPFPRFTVNSAQTGL*RWLSKT Trigger: AGTTTTGCTCAGCCATCTGCAGAGCCCAGTTTGGGC...AGAATTTACAGTAAATCTGGGGAAAGGCATCATGGTGGATGAGGATTTAAATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAAGCCACCAAGTGGGGATaGGACTCCACCATTGACTTC | + |
|
Preference number: 4 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKATKWG*DSTIDF Trigger: GAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGC...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAAGCTTCAGCCACCAAGTaGGGATGGGACTCCACCATT | + |
|
Preference number: 4 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKASATK*GWDSTI Trigger: AATGGTGGAGTCCCATCCCCACTTGGTGGCTGAAGC...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAAGCTGTGGAGGTATGGTaGCTTCCCCGTGTAGATGAA | + |
|
Preference number: 4 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKAVEVW*LPRVDE Trigger: TTCATCTACACGGGGAAGGCACCATACCTCCACAGC...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAACCAGAACTTGAACTTTaGCCAAACTGGGCTCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKPELEL*PNWALQ Trigger: CTGCAGAGCCCAGTTTGGGCAAAGTTCAAGTTCTGG...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAAATAGACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCAGGCTCTGCAGATGGCTaGGCAAAACTAAGTAAACTG | + |
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Preference number: 4 (lower is better) Translates to: FQNRRNIFACVDPQTLLPGSADG*AKLSKL Trigger: CAGTTTACTTAGTTTTGCTCAGCCATCTGCAGAGCC...TGGGAGAAGTGTTTGTGGGTCAACACATGCAAAAATGTTTCGTCTATTTTGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR GCA 90 bp | TTTCAAAATAGACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCATCACAGAGAGGTTCCTaGAGAAAGCATCCTCACACA | + |
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Preference number: 4 (lower is better) Translates to: FQNRRNIFACVDPQTLLPSQRGS*RKHPHT Trigger: TGTGTGAGGATGCTTTCTGCAGGAACCTCTCTGTGA...TGGGAGAAGTGTTTGTGGGTCAACACATGCAAAAATGTTTCGTCTATTTTGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | CGATTTAAATCCTCATCCACCATGATGCCTTTCCCCAGATTTACTGTAAATTCTATCTCCTTGAAGACTTaGGGATTCAGGTTATGGATC | + |
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Preference number: 4 (lower is better) Translates to: RFKSSSTMMPFPRFTVNSISLKT*GFRLWI Trigger: GATCCATAACCTGAATCCCCAAGTCTTCAAGGAGAT...AGAATTTACAGTAAATCTGGGGAAAGGCATCATGGTGGATGAGGATTTAAATCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CCA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAAATCTCCTTGAAGACTTaGGGATTCAGGTTATGGATC | + |
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Preference number: 4 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKISLKT*GFRLWI Trigger: GATCCATAACCTGAATCCCCAAGTCTTCAAGGAGAT...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| 3UTR CAA 72 bp | AAAATTATTTGGTTAAAGATTTGTCTATGCAACTGTTaGTGGCTATGGAGACCAGAAGAGGGCTTCAGATCC | + |
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Preference number: 4 (lower is better) Translates to: KIIWLKICLCNC*WLWRPEEGFRS Trigger: GGATCTGAAGCCCTCTTCTGGTCTCCATAGCCACAAACAGTTGCATAGACAAATCTTTAACCAAATAATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR TCA 90 bp | TTTCAAAATAGACGAAACATTTTTGCATGTGTTGACCCACAAACACTTCTCCCAGAGGGAGAAACTTTTTaGATCCACTCTGTTCATATG | + |
|
Preference number: 4 (lower is better) Translates to: FQNRRNIFACVDPQTLLPEGETF*IHSVHM Trigger: CATATGAACAGAGTGGATTCAAAAAGTTTCTCCCTC...TGGGAGAAGTGTTTGTGGGTCAACACATGCAAAAATGTTTCGTCTATTTTGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CCA 90 bp | CTCACACAGGACCTTCAGGCTCACCAGGCCATACTTGTCAGCAGCTaGCAGCACATCACAGGCCATGGAGTGGCTGTGGAGGTATGGTGC | + |
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Preference number: 5 (lower is better) Translates to: LTQDLQAHQAILVSS*QHITGHGVAVEVWC Trigger: GCACCATACCTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCTGCTGACAAGTATGGCCTGGTGAGCCTGAAGGTCCTGTGTGAG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CCA 90 bp | TGTGCAGAAGCCAGGGACTGGAATGCTTCAGCCACCAAGTGGGGATaGGACTCCACCATTGACTTCCACTCTGAGGTCTCACAGACCTCA | + |
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Preference number: 5 (lower is better) Translates to: CAEARDWNASATKWG*DSTIDFHSEVSQTS Trigger: TGAGGTCTGTGAGACCTCAGAGTGGAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGCTGAAGCATTCCAGTCCCTGGCTTCTGCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CCA 90 bp | AGCAGCTGGCAGCACATCACAGGCCATGGAGTGGCTGTGGAGGTATaGTGCCTTCCCCGTGTAGATGAAACTCATCATCTCCTTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: SSWQHITGHGVAVEV*CLPRVDETHHLLED Trigger: GTCTTCAAGGAGATGATGAGTTTCATCTACACGGGGAAGGCACCATACCTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS GCA 90 bp | AGCTGGCAGCACATCACAGGCCATGGAGTGGCTGTGGAGGTATGGTaGCTTCCCCGTGTAGATGAAACTCATCATCTCCTTGAAGACTTG | + |
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Preference number: 5 (lower is better) Translates to: SWQHITGHGVAVEVW*LPRVDETHHLLEDL Trigger: CAAGTCTTCAAGGAGATGATGAGTTTCATCTACACGGGGAAGGCACCATACCTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS TCA 90 bp | ACTTCCACTCTGAGGTCTCACAGACCTCAGAGGCATAGTAGGCAATaGAATCAAGGGCCTGAGTCTTCAGCTTCTCTGTGCTGTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: TSTLRSHRPQRHSRQ*NQGPESSASLCCAG Trigger: ACCTGCACAGCACAGAGAAGCTGAAGACTCAGGCCCTTGATTTCATTGCCTACTATGCCTCTGAGGTCTGTGAGACCTCAGAGTGGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS TCA 90 bp | GCATGTTATATTTGCGTCCTAATATGGTCACCTTGCAGCAGATGGTaGGCTGATCTTCAGGGAGAAGGCAATTCCGATGGGAGAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: ACYICVLIWSPCSRW*ADLQGEGNSDGRGG Trigger: TCCTCCTCTCCCATCGGAATTGCCTTCTCCCTGAAGATCAGCTCACCATCTGCTGCAAGGTGACCATATTAGGACGCAAATATAACATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CAA 90 bp | ACTGGTGGGACAGCAAGGATTCTGCACAAACATCCACAGCTGAGCTTGGCTAATCATCTCCTTGAAGACTaGGGGATTCAGGTTATGGAT | + |
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Preference number: 5 (lower is better) Translates to: TGGTARILHKHPQLSLANHLLED*GIQVMD Trigger: ATCCATAACCTGAATCCCCAAGTCTTCAAGGAGATG...ATTAGCCAAGCTCAGCTGTGGATGTTTGTGCAGAATCCTTGCTGTCCCACCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CAA 90 bp | GATTTCTCCTTTCCTCTGACCACGGTCATCTGTTCTGCTCAGTCCACTGCAGATAAACTCATCATCTCCTaGAAGACTTGGGGATTCAGG | + |
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Preference number: 5 (lower is better) Translates to: DFSFPLTTVICSAQSTADKLIIS*KTWGFR Trigger: CCTGAATCCCCAAGTCTTCAAGGAGATGATGAGTTT...ATCTGCAGTGGACTGAGCAGAACAGATGACCGTGGTCAGAGGAAAGGAGAAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CAA 90 bp | CGATTTAAATCCTCATCCACCATGATGCCTTTCCCCAGATTTACTGTAAATTCTCATCTCCTTGAAGACTaGGGGATTCAGGTTATGGAT | + |
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Preference number: 5 (lower is better) Translates to: RFKSSSTMMPFPRFTVNSHLLED*GIQVMD Trigger: ATCCATAACCTGAATCCCCAAGTCTTCAAGGAGATG...AGAATTTACAGTAAATCTGGGGAAAGGCATCATGGTGGATGAGGATTTAAATCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CAA 90 bp | CGATTTAAATCCTCATCCACCATGATGCCTTTCCCCAGATTTACTGTAAATTCTCGAGGGAGAAACTTTTaGAATCCACTCTGTTCATAT | + |
|
Preference number: 5 (lower is better) Translates to: RFKSSSTMMPFPRFTVNSRGRNF*NPLCSY Trigger: ATATGAACAGAGTGGATTCAAAAAGTTTCTCCCTCG...AGAATTTACAGTAAATCTGGGGAAAGGCATCATGGTGGATGAGGATTTAAATCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS-3UTR CAA 90 bp | GAGAGAGCAGTAATTGCCTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAAAACGAGGGAGAAACTTTTaGAATCCACTCTGTTCATAT | + |
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Preference number: 5 (lower is better) Translates to: ERAVIAFTAEFPQNKSLKRGRNF*NPLCSY Trigger: ATATGAACAGAGTGGATTCAAAAAGTTTCTCCCTCG...TTTTAAAGACTTATTTTGTGGGAACTCAGCTGTAAAGGCAATTACTGCTCTCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CCA 72 bp | GACCTTCAGGCTCACCAGGCCATACTTGTCAGCAGCTaGCAGCACATCACAGGCCATGGAGTGGCTGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: DLQAHQAILVSS*QHITGHGVAVE Trigger: CTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCTGCTGACAAGTATGGCCTGGTGAGCCTGAAGGTC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CAA 90 bp | CAGAAAGCATCCTCACACAGGACCTTCAGGCTCACCAGGCCATACTaGTCAGCAGCTGGCAGCACATCACAGGCCATGGAGTGGCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: QKASSHRTFRLTRPY*SAAGSTSQAMEWLW Trigger: CCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCTGCTGACAAGTATGGCCTGGTGAGCCTGAAGGTCCTGTGTGAGGATGCTTTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CCA 72 bp | CATACTTGTCAGCAGCTGGCAGCACATCACAGGCCATaGAGTGGCTGTGGAGGTATGGTGCCTTCCCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: HTCQQLAAHHRP*SGCGGMVPSPC Trigger: ACACGGGGAAGGCACCATACCTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCTGCTGACAAGTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CAA 90 bp | GGGACTGGAATGCTTCAGCCACCAAGTGGGGATGGGACTCCACCATaGACTTCCACTCTGAGGTCTCACAGACCTCAGAGGCATAGTAGG | + |
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Preference number: 6 (lower is better) Translates to: GTGMLQPPSGDGTPP*TSTLRSHRPQRHSR Trigger: CCTACTATGCCTCTGAGGTCTGTGAGACCTCAGAGTGGAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGCTGAAGCATTCCAGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CAA 72 bp | ATGCTTCAGCCACCAAGTGGGGATGGGACTCCACCATaGACTTCCACTCTGAGGTCTCACAGACCTCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: MLQPPSGDGTPP*TSTLRSHRPQR Trigger: CCTCTGAGGTCTGTGAGACCTCAGAGTGGAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGCTGAAGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS TCA 72 bp | CTGAGGTCTCACAGACCTCAGAGGCATAGTAGGCAATaGAATCAAGGGCCTGAGTCTTCAGCTTCTCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: LRSHRPQRHSRQ*NQGPESSASLC Trigger: GCACAGAGAAGCTGAAGACTCAGGCCCTTGATTTCATTGCCTACTATGCCTCTGAGGTCTGTGAGACCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS TCA 72 bp | ATTTGCGTCCTAATATGGTCACCTTGCAGCAGATGGTaGGCTGATCTTCAGGGAGAAGGCAATTCCGATGGG | + |
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Preference number: 6 (lower is better) Translates to: ICVLIWSPCSRW*ADLQGEGNSDG Trigger: CCCATCGGAATTGCCTTCTCCCTGAAGATCAGCTCACCATCTGCTGCAAGGTGACCATATTAGGACGCAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CAA 90 bp | AGGCAATTCCGATGGGAGAGGAGGAGATCTCGAGGGAGAAACTTTTaGAATCCACTCTGTTCATATGTCAGAAAGCATTCGACAATGGGG | + |
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Preference number: 6 (lower is better) Translates to: RQFRWERRRSRGRNF*NPLCSYVRKHSTMG Trigger: CCCCATTGTCGAATGCTTTCTGACATATGAACAGAGTGGATTCAAAAAGTTTCTCCCTCGAGATCTCCTCCTCTCCCATCGGAATTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CCA 72 bp | TCCATTTATAGCAGAATTTCTCAACACTGCTCTGTGTaGAGCCCCAGTTCTCGAATTCCATATCCTCTGACA | + |
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Preference number: 6 (lower is better) Translates to: SIYSRISQHCSV*SPSSRIPYPLT Trigger: TGTCAGAGGATATGGAATTCGAGAACTGGGGCTCCACACAGAGCAGTGTTGAGAAATTCTGCTATAAATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS TCA 72 bp | AGGTGCCTTGGATCCTTGATTGCAGGTGTTATGTTTTaGCTAGGCATGTTATATTTGCGTCCTAATATGGTC | + |
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Preference number: 6 (lower is better) Translates to: RCLGSLIAGVMF*LGMLYLRPNMV Trigger: GACCATATTAGGACGCAAATATAACATGCCTAGTCAAAACATAACACCTGCAATCAAGGATCCAAGGCACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CAA 72 bp | TGTCAGAAAGCATTCGACAATGGGGCTCTTTGTTTTTaGATATTTCTCTCCTTGGGAATTTATGATCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: CQKAFDNGALCF*IFLSLGIYDPE Trigger: TTCTGGATCATAAATTCCCAAGGAGAGAAATATCAAAAAACAAAGAGCCCCATTGTCGAATGCTTTCTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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| CDS CAA 90 bp | CTGTTCATATGTCAGAAAGCATTCGACAATGGGGCTCTTTGTTTTTaGATATTTCTCTCCTTGGGAATTTATGATCCAGAACTTGAACTT | + |
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Preference number: 6 (lower is better) Translates to: LFICQKAFDNGALCF*IFLSLGIYDPELEL Trigger: AAGTTCAAGTTCTGGATCATAAATTCCCAAGGAGAGAAATATCAAAAAACAAAGAGCCCCATTGTCGAATGCTTTCTGACATATGAACAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000178458.2 ENSMUST00000180746.2 |
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