Pregenerated sensors for TDP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035958Ensembl transcript IDs: ENSMUST00000038039.3, ENSMUST00000223804.2, ENSMUST00000225138.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTAAAGCTGCAAGTGGGAAGCTTTTCACAATACTACATTCAAGGTaGACAAGAGCCCCCAGTGATCACTCGGAAATCTACCACAGTCCA | + |
|
Preference number: 1 (lower is better) Translates to: CKAASGKLFTILHSR*TRAPSDHSEIYHSP Trigger: TGGACTGTGGTAGATTTCCGAGTGATCACTGGGGGCTCTTGTGCACCTTGAATGTAGTATTGTGAAAAGCTTCCCACTTGCAGCTTTACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR CCA 90 bp | CTGGAATCAGATGCAATGCTAGCAAAAGGGAGGCTGGAAGAGAGCTaGAGGTCAGGATTATTGCAAGCCTCTGTCTCGAAAAAGAACAAA | + |
|
Preference number: 1 (lower is better) Translates to: LESDAMLAKGRLEES*RSGLLQASVSKKNK Trigger: TTTGTTCTTTTTCGAGACAGAGGCTTGCAATAATCCTGACCTCCAGCTCTCTTCCAGCCTCCCTTTTGCTAGCATTGCATCTGATTCCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000223804.2 |
||
| 3UTR-3UTR GCA 90 bp | CATTCAAGGTGCACAAGAGCCCCCAGTGATCACTCGGAAATCTACCACAGTCCACAGAATGTTCTCTGGTaGTCTCCAAATGGGATGTCA | + |
|
Preference number: 2 (lower is better) Translates to: HSRCTRAPSDHSEIYHSPQNVLW*SPNGMS Trigger: TGACATCCCATTTGGAGAGCACCAGAGAACATTCTG...TGGACTGTGGTAGATTTCCGAGTGATCACTGGGGGCTCTTGTGCACCTTGAATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR-3UTR TCA 90 bp | CATTCAAGGTGCACAAGAGCCCCCAGTGATCACTCGGAAATCTACCACAGTCCAAAATATAACCGTGGTTaGATCTGGAGCCTCTTGCAT | + |
|
Preference number: 2 (lower is better) Translates to: HSRCTRAPSDHSEIYHSPKYNRG*IWSLLH Trigger: ATGCAAGAGGCTCCAGATTCAACCACGGTTATATTT...TGGACTGTGGTAGATTTCCGAGTGATCACTGGGGGCTCTTGTGCACCTTGAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR-3UTR CCA 90 bp | CATTCAAGGTGCACAAGAGCCCCCAGTGATCACTCGGAAATCTACCACAGTCCACTGGTGCTCTCCAAATaGGATGTCATAAGGCAAAAT | + |
|
Preference number: 2 (lower is better) Translates to: HSRCTRAPSDHSEIYHSPLVLSK*DVIRQN Trigger: ATTTTGCCTTATGACATCCCATTTGGAGAGCACCAG...TGGACTGTGGTAGATTTCCGAGTGATCACTGGGGGCTCTTGTGCACCTTGAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR-3UTR GCA 90 bp | CACTCGGAAATCTACCACAGTCCAGTTTTTCCAACCCAACAAGGTCTAAACTTTGAATCTGGAGCCTCTTaGATTTTTCCAAGAACAGTT | + |
|
Preference number: 2 (lower is better) Translates to: HSEIYHSPVFPTQQGLNFESGAS*IFPRTV Trigger: AACTGTTCTTGGAAAAATGCAAGAGGCTCCAGATTC...AAAGTTTAGACCTTGTTGGGTTGGAAAAACTGGACTGTGGTAGATTTCCGAGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTGAACTTACAGAATATAAGACAATGCAGTCTCAAGAGTTCAATGGCTTACTTGAGTCAGTGGAACTGTaGCTGACTCATCAGTCACTA | + |
|
Preference number: 2 (lower is better) Translates to: SELTEYKTMQSQEFNGLLESVEL*LTHQSL Trigger: TAGTGACTGATGAGTCAGTCACAGTTCCACTGACTC...AAGTAAGCCATTGAACTCTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| 3UTR-3UTR GCA 90 bp | ACATTTCTGAACTTACAGAATATAAGACAATGCAGTCTCAAGAGTTCAATGGCTATACTACATTCAAGGTaGACAAGAGCCCCCAGTGAT | + |
|
Preference number: 2 (lower is better) Translates to: TFLNLQNIRQCSLKSSMAILHSR*TRAPSD Trigger: ATCACTGGGGGCTCTTGTGCACCTTGAATGTAGTAT...AGCCATTGAACTCTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGAAATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR CAA 90 bp | TTGTTATTTGCTTTCGTATCCCATGTATACTGGCAATGTTTAGGTTaGCCTAAAAATTCCCAGGCATCAAAAACGTTGTCAGGTAAACCA | + |
|
Preference number: 2 (lower is better) Translates to: LLFAFVSHVYWQCLG*PKNSQASKTLSGKP Trigger: TGGTTTACCTGACAACGTTTTTGATGCCTGGGAATTTTTAGGCAAACCTAAACATTGCCAGTATACATGGGATACGAAAGCAAATAACAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR-3UTR GCA 90 bp | ATCTACTTTACTACGGTTGGTCACGGCTTTTTCACTTACATTTCTGAACTTACAAACGTTAGCTGCTTTTaGTGTAGTAATCATCCAGTT | + |
|
Preference number: 2 (lower is better) Translates to: IYFTTVGHGFFTYISELTNVSCF*CSNHPV Trigger: AACTGGATGATTACTACAGCAAAAGCAGCTAACGTT...TGTAAGTTCAGAAATGTAAGTGAAAAAGCCGTGACCAACCGTAGTAAAGTAGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| 3UTR-3UTR GCA 90 bp | TCTGAACTTACAGAATATAAGACAATGCAGTCTCAAGAGTTCAATGGCTTACTTAACGTTAGCTGCTTTTaGTGTAGTAATCATCCAGTT | + |
|
Preference number: 2 (lower is better) Translates to: SELTEYKTMQSQEFNGLLNVSCF*CSNHPV Trigger: AACTGGATGATTACTACAGCAAAAGCAGCTAACGTT...AAGTAAGCCATTGAACTCTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038039.3 ENSMUST00000225138.2 |
||
| 3UTR-3UTR GCA 90 bp | TCTGAACTTACAGAATATAAGACAATGCAGTCTCAAGAGTTCAATGGCTTACTTCCTGAGGTTGTTATTTaGTTTCGTATCCCATGTATA | + |
|
Preference number: 2 (lower is better) Translates to: SELTEYKTMQSQEFNGLLPEVVI*FRIPCI Trigger: TATACATGGGATACGAAAGCAAATAACAACCTCAGG...AAGTAAGCCATTGAACTCTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR CCA 72 bp | GGGTTTCACAAACCTTTAATCCCAGTACTGGGCCAATaGAAGGCAAGCCTTGACCACAAAGGAGTTCCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: GFHKPLIPVLGQ*KASLDHKGVPS Trigger: ACTTGGAACTCCTTTGTGGTCAAGGCTTGCCTTCCATTGGCCCAGTACTGGGATTAAAGGTTTGTGAAACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223804.2 |
||
| 3UTR GCA 72 bp | AAGGGAGGCTGGAAGAGAGCTGGAGGTCAGGATTATTaGAAGCCTCTGTCTCGAAAAAGAACAAATAACGGT | + |
|
Preference number: 3 (lower is better) Translates to: KGGWKRAGGQDY*KPLSRKRTNNG Trigger: ACCGTTATTTGTTCTTTTTCGAGACAGAGGCTTGCAATAATCCTGACCTCCAGCTCTCTTCCAGCCTCCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223804.2 |
||
| 3UTR GCA 72 bp | ATGCTTATAAGCAGCAGGGATCCTGAGGTTGTTATTTaGTTTCGTATCCCATGTATACTGGCAATGTTTAGG | + |
|
Preference number: 3 (lower is better) Translates to: MLISSRDPEVVI*FRIPCILAMFR Trigger: CCTAAACATTGCCAGTATACATGGGATACGAAAGCAAATAACAACCTCAGGATCCCTGCTGCTTATAAGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| 3UTR TCA 72 bp | AATTCTTCTGTATTAGACCCAGATGTCCTGAAAGGTTaGGACCTACACAAATTCAGAACTAGTGCTAACAAA | + |
|
Preference number: 3 (lower is better) Translates to: NSSVLDPDVLKG*DLHKFRTSANK Trigger: TTTGTTAGCACTAGTTCTGAATTTGTGTAGGTCTCAACCTTTCAGGACATCTGGGTCTAATACAGAAGAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038039.3 ENSMUST00000225138.2 |
||
| CDS-3UTR GCA 90 bp | GTCACAAGCGGAGAGGTTATGTCCTTTAAACCAAAGCCCACACATTCTGACATAAAGGTGCCCCTCTTCTaGTCTGAAAAATATTCGATC | + |
|
Preference number: 4 (lower is better) Translates to: VTSGEVMSFKPKPTHSDIKVPLF*SEKYSI Trigger: GATCGAATATTTTTCAGAGCAGAAGAGGGGCACCTT...TATGTCAGAATGTGTGGGCTTTGGTTTAAAGGACATAACCTCTCCGCTTGTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| 3UTR CAA 72 bp | CGCCCATTACTTGAAATCCTGATGGCAACAATGACTTaGTCACAAGCGGAGAGGTTATGTCCTTTAAACCAA | + |
|
Preference number: 4 (lower is better) Translates to: RPLLEILMATMT*SQAERLCPLNQ Trigger: TTGGTTTAAAGGACATAACCTCTCCGCTTGTGACAAAGTCATTGTTGCCATCAGGATTTCAAGTAATGGGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038039.3 ENSMUST00000225138.2 |
||
| CDS-3UTR TCA 90 bp | CACAAGATACAAAGTAAAACGTTAGCTGCTTTTGCTGTAGTAATCATCCAGTTTCACAAGAGCCCCCAGTaGTCACTCGGAAATCTACCA | + |
|
Preference number: 4 (lower is better) Translates to: HKIQSKTLAAFAVVIIQFHKSPQ*SLGNLP Trigger: TGGTAGATTTCCGAGTGATCACTGGGGGCTCTTGTG...AAACTGGATGATTACTACAGCAAAAGCAGCTAACGTTTTACTTTGTATCTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR GCA 90 bp | ACAACAGCTGTCATCTACTTTACTACGGTTGGTCACGGCTTTTTCACTTACATTATACTACATTCAAGGTaGACAAGAGCCCCCAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: TTAVIYFTTVGHGFFTYIILHSR*TRAPSD Trigger: ATCACTGGGGGCTCTTGTGCACCTTGAATGTAGTAT...AATGTAAGTGAAAAAGCCGTGACCAACCGTAGTAAAGTAGATGACAGCTGTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR CCA 90 bp | GTCACAAGCGGAGAGGTTATGTCCTTTAAACCAAAGCCCACACATTCTGACATAGTATCCCATGTATACTaGCAATGTTTAGGTTTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VTSGEVMSFKPKPTHSDIVSHVY*QCLGLP Trigger: AGGCAAACCTAAACATTGCCAGTATACATGGGATAC...TATGTCAGAATGTGTGGGCTTTGGTTTAAAGGACATAACCTCTCCGCTTGTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR GCA 90 bp | GTCACAAGCGGAGAGGTTATGTCCTTTAAACCAAAGCCCACACATTCTGACATACCTGAGGTTGTTATTTaGTTTCGTATCCCATGTATA | + |
|
Preference number: 4 (lower is better) Translates to: VTSGEVMSFKPKPTHSDIPEVVI*FRIPCI Trigger: TATACATGGGATACGAAAGCAAATAACAACCTCAGG...TATGTCAGAATGTGTGGGCTTTGGTTTAAAGGACATAACCTCTCCGCTTGTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR CCA 90 bp | ACAACAGCTGTCATCTACTTTACTACGGTTGGTCACGGCTTTTTCACTTACATTCTGGTGCTCTCCAAATaGGATGTCATAAGGCAAAAT | + |
|
Preference number: 4 (lower is better) Translates to: TTAVIYFTTVGHGFFTYILVLSK*DVIRQN Trigger: ATTTTGCCTTATGACATCCCATTTGGAGAGCACCAG...AATGTAAGTGAAAAAGCCGTGACCAACCGTAGTAAAGTAGATGACAGCTGTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR TCA 90 bp | GGACACAAGATACAAAGTAAAACGTTAGCTGCTTTTGCTGTAGTAATCATCCAGAAATATAACCGTGGTTaGATCTGGAGCCTCTTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: GHKIQSKTLAAFAVVIIQKYNRG*IWSLLH Trigger: ATGCAAGAGGCTCCAGATTCAACCACGGTTATATTT...CTGGATGATTACTACAGCAAAAGCAGCTAACGTTTTACTTTGTATCTTGTGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR GCA 90 bp | GGAACTGTGACTGACTCATCAGTCACTATATACTATCAGCTGACAAAATTAAGTCAGAATGTTCTCTGGTaGTCTCCAAATGGGATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GTVTDSSVTIYYQLTKLSQNVLW*SPNGMS Trigger: TGACATCCCATTTGGAGAGCACCAGAGAACATTCTG...ACTTAATTTTGTCAGCTGATAGTATATAGTGACTGATGAGTCAGTCACAGTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| 3UTR CAA 72 bp | GCTTTCGTATCCCATGTATACTGGCAATGTTTAGGTTaGCCTAAAAATTCCCAGGCATCAAAAACGTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: AFVSHVYWQCLG*PKNSQASKTLS Trigger: TGACAACGTTTTTGATGCCTGGGAATTTTTAGGCAAACCTAAACATTGCCAGTATACATGGGATACGAAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000225138.2 |
||
| CDS-3UTR TCA 90 bp | TCTGAACTTACAGAATATAAGACAATGCAGTCTCAAGAGTTCAATGGCTTACTTACAAGGTCTAAACTTTaGGGAATAAGGTGCCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SELTEYKTMQSQEFNGLLTRSKL*GIRCPS Trigger: AGAGGGGCACCTTATTCCTCAAAGTTTAGACCTTGT...AAGTAAGCCATTGAACTCTTGAGACTGCATTGTCTTATATTCTGTAAGTTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR GCA 90 bp | ATCTACTTTACTACGGTTGGTCACGGCTTTTTCACTTACATTTCTGAACTTACAGAATCTGGAGCCTCTTaGATTTTTCCAAGAACAGTT | + |
|
Preference number: 4 (lower is better) Translates to: IYFTTVGHGFFTYISELTESGAS*IFPRTV Trigger: AACTGTTCTTGGAAAAATGCAAGAGGCTCCAGATTC...TGTAAGTTCAGAAATGTAAGTGAAAAAGCCGTGACCAACCGTAGTAAAGTAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS-3UTR CCA 90 bp | AAGCTGGGTTTAATCATTGCCAAGATGAACTTTGTCAGTTCCCAGCAAATAACTGACTGGCTTCTAAAATaGTTGTATCATTTGCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: KLGLIIAKMNFVSSQQITDWLLK*LYHLHP Trigger: AGGATGCAAATGATACAACCATTTTAGAAGCCAGTC...AGTTATTTGCTGGGAACTGACAAAGTTCATCTTGGCAATGATTAAACCCAGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| 3UTR CAA 72 bp | TCTGATATACAACAGCTGTCATCTACTTTACTACGGTaGGTCACGGCTTTTTCACTTACATTTCTGAACTTA | + |
|
Preference number: 4 (lower is better) Translates to: SDIQQLSSTLLR*VTAFSLTFLNL Trigger: TAAGTTCAGAAATGTAAGTGAAAAAGCCGTGACCAACCGTAGTAAAGTAGATGACAGCTGTTGTATATCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS GCA 90 bp | GTCCTCCTCCGCCTGTGCTGCTTCGGGCGCCGACGCCGCCCGCCCTaGCGGCCCTGCGGGCTCCGCCGCATCGGAACTGCTGCCAGACGC | + |
|
Preference number: 5 (lower is better) Translates to: VLLRLCCFGRRRRPP*RPCGLRRIGTAARR Trigger: GCGTCTGGCAGCAGTTCCGATGCGGCGGAGCCCGCAGGGCCGGCAGGGCGGGCGGCGTCGGCGCCCGAAGCAGCACAGGCGGAGGAGGAC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038039.3 ENSMUST00000223804.2 ENSMUST00000225138.2 |
||
| CDS GCA 90 bp | GCACTGAAGCCGCCGCCTCTTCACCCGGTCCTCCTCCGCCTGTGCTaGTTCGGGCGCCGACGCCGCCCGCCCTGCCGGCCCTGCGGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: ALKPPPLHPVLLRLC*FGRRRRPPCRPCGL Trigger: GAGCCCGCAGGGCCGGCAGGGCGGGCGGCGTCGGCGCCCGAAGCAGCACAGGCGGAGGAGGACCGGGTGAAGAGGCGGCGGCTTCAGTGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038039.3 ENSMUST00000223804.2 ENSMUST00000225138.2 |
||
| CDS GCA 90 bp | CAGGCACTGAAGCCGCCGCCTCTTCACCCGGTCCTCCTCCGCCTGTaGTGCTTCGGGCGCCGACGCCGCCCGCCCTGCCGGCCCTGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: QALKPPPLHPVLLRL*CFGRRRRPPCRPCG Trigger: CCCGCAGGGCCGGCAGGGCGGGCGGCGTCGGCGCCCGAAGCAGCACAGGCGGAGGAGGACCGGGTGAAGAGGCGGCGGCTTCAGTGCCTG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038039.3 ENSMUST00000223804.2 ENSMUST00000225138.2 |
||
| CDS-3UTR CAA 90 bp | GGAACTGTGACTGACTCATCAGTCACTATATACTATCAGCTGACAAAATTAAGTTGGCAATGTTTAGGTTaGCCTAAAAATTCCCAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: GTVTDSSVTIYYQLTKLSWQCLG*PKNSQA Trigger: TGCCTGGGAATTTTTAGGCAAACCTAAACATTGCCA...ACTTAATTTTGTCAGCTGATAGTATATAGTGACTGATGAGTCAGTCACAGTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS GCA 72 bp | AAGCCGCCGCCTCTTCACCCGGTCCTCCTCCGCCTGTaGTGCTTCGGGCGCCGACGCCGCCCGCCCTGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: KPPPLHPVLLRL*CFGRRRRPPCR Trigger: CCGGCAGGGCGGGCGGCGTCGGCGCCCGAAGCAGCACAGGCGGAGGAGGACCGGGTGAAGAGGCGGCGGCTT 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038039.3 ENSMUST00000223804.2 ENSMUST00000225138.2 |
||
| CDS CAA 72 bp | AGGCAGGAACACACCCCTCGAGCCCTCTCGGGCAGATaGCATCCATCTAATCCATCAATATTCCAGGTAATG | + |
|
Preference number: 6 (lower is better) Translates to: RQEHTPRALSGR*HPSNPSIFQVM Trigger: CATTACCTGGAATATTGATGGATTAGATGGATGCAATCTGCCCGAGAGGGCTCGAGGGGTGTGTTCCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS CAA 90 bp | TACAAAGCTAGGCAGGAACACACCCCTCGAGCCCTCTCGGGCAGATaGCATCCATCTAATCCATCAATATTCCAGGTAATGAAAGAAATA | + |
|
Preference number: 6 (lower is better) Translates to: YKARQEHTPRALSGR*HPSNPSIFQVMKEI Trigger: TATTTCTTTCATTACCTGGAATATTGATGGATTAGATGGATGCAATCTGCCCGAGAGGGCTCGAGGGGTGTGTTCCTGCCTAGCTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS CAA 72 bp | TTCCAGATGGACTGGCTTCTAAAATGGTTGTATCATTaGCATCCTCGTTGGTTAGATCAACATAGGCCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: FQMDWLLKWLYH*HPRWLDQHRPR Trigger: CCGAGGCCTATGTTGATCTAACCAACGAGGATGCAAATGATACAACCATTTTAGAAGCCAGTCCATCTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||
| CDS CCA 72 bp | CTTCTAGAGGAGTTCCAGATGGACTGGCTTCTAAAATaGTTGTATCATTTGCATCCTCGTTGGTTAGATCAA | + |
|
Preference number: 6 (lower is better) Translates to: LLEEFQMDWLLK*LYHLHPRWLDQ Trigger: TTGATCTAACCAACGAGGATGCAAATGATACAACCATTTTAGAAGCCAGTCCATCTGGAACTCCTCTAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038039.3 |
||