Pregenerated sensors for TDO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028011Ensembl transcript IDs: ENSMUST00000029645.14, ENSMUST00000193879.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGCACCAAAGGTCCAAAAATCCATGGACGATCAGTTCTTACATGTaGGGTGTCATTTATTTTGATATAATCTGGCATCTTTATACTCTT | + |
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Preference number: 1 (lower is better) Translates to: EHQRSKNPWTISSYM*GVIYFDIIWHLYTL Trigger: AAGAGTATAAAGATGCCAGATTATATCAAAATAAATGACACCTCACATGTAAGAACTGATCGTCCATGGATTTTTGGACCTTTGGTGCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR TCA 90 bp | TTTAGCCTACTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTTTTCTTAAGTGCCTTTaGGTTCTGGGAGCAGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: FSLLISEILLLAHGIFLCFLKCL*VLGAGA Trigger: TGCACCTGCTCCCAGAACTCAAAGGCACTTAAGAAA...ACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAGTAGGCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR TCA 90 bp | TTTAGCCTACTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTTACGACAGCCAACACTaGCACAGAAGAAAGAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: FSLLISEILLLAHGIFLCYDSQH*HRRKKS Trigger: GCTCTTCTTTCTTCTGTGTCAGTGTTGGCTGTCGTA...ACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAGTAGGCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR TCA 90 bp | TTTGCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTTCTGTTTAATCAGTTaGCCTGTTTATTGGGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: FAVSPWYFPLYLYLFNPHFCLIS*PVYWVG Trigger: CCCAACCCAATAAACAGGTCAACTGATTAAACAGAA...GTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR CCA 90 bp | GATACTTATGGTGTTTCGTTGAGACTGATTTATAGTGTGCTTCTTTCAAGAACTAGGGTTAAAATATTCTaGGAGCTGAACTGGGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: DTYGVSLRLIYSVLLSRTRVKIF*ELNWVA Trigger: AGCAACCCAGTTCAGCTCCCAGAATATTTTAACCCT...AGTTCTTGAAAGAAGCACACTATAAATCAGTCTCAACGAAACACCATAAGTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR GCA 90 bp | CTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCGCATCATGTACTTGTTaGAAATGGACATGGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LISEILLLAHGIFLCIYIASCTC*KWTWFL Trigger: CAGAAACCATGTCCATTTGCAACAAGTACATGATGC...GATATAAATACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR CCA 90 bp | GATACTTATGGTGTTTCGTTGAGACTGATTTATAGTGTGCTTCTTTCAAGAACTTGTTGCAAATGGACATaGTTTCTGTTTAATCAGTTG | + |
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Preference number: 2 (lower is better) Translates to: DTYGVSLRLIYSVLLSRTCCKWT*FLFNQL Trigger: CAACTGATTAAACAGAAACCATGTCCATTTGCAACA...AGTTCTTGAAAGAAGCACACTATAAATCAGTCTCAACGAAACACCATAAGTATC 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR CCA 72 bp | GTCGATAGATCCAAGATGTGGAAGCTAGCGAACAGATaGTCCCACTTTACATGCGTATTACAGTGCAGCGAA | + |
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Preference number: 3 (lower is better) Translates to: VDRSKMWKLANR*SHFTCVLQCSE Trigger: TTCGCTGCACTGTAATACGCATGTAAAGTGGGACCATCTGTTCGCTAGCTTCCACATCTTGGATCTATCGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR CCA 72 bp | AAATGTATCAGGGTTAAAATATTCTGGGAGCTGAACTaGGTTGCTGTGATATATTTCTTAAGTGCCTTTGAG | + |
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Preference number: 3 (lower is better) Translates to: KCIRVKIFWELN*VAVIYFLSAFE Trigger: CTCAAAGGCACTTAAGAAATATATCACAGCAACCCAGTTCAGCTCCCAGAATATTTTAACCCTGATACATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR CAA 90 bp | TTCTTCCTTTACATATTAAACATTGGAAAGTCGATAGATCCAAGATGTGGAAGCTTTCTGTTTAATCAGTaGACCTGTTTATTGGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: FFLYILNIGKSIDPRCGSFLFNQ*TCLLGW Trigger: CCAACCCAATAAACAGGTCAACTGATTAAACAGAAA...GCTTCCACATCTTGGATCTATCGACTTTCCAATGTTTAATATGTAAAGGAAGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR-3UTR CAA 90 bp | CTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCACTTATGGTGTTTCGTaGAGACTGATTTATAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: LISEILLLAHGIFLCIYITYGVS*RLIYSV Trigger: CACACTATAAATCAGTCTCAACGAAACACCATAAGT...GATATAAATACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR TCA 72 bp | AGGTCCAAAAATCCATGGACGATCAGTTCTTACATGTaGGGTGTCATTTATTTTGATATAATCTGGCATCTT | + |
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Preference number: 3 (lower is better) Translates to: RSKNPWTISSYM*GVIYFDIIWHL Trigger: AAGATGCCAGATTATATCAAAATAAATGACACCTCACATGTAAGAACTGATCGTCCATGGATTTTTGGACCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | ACTGTAATACCAGTTCCAGGAGCACCAAAGGTCCAAAAATCCATGGACGATCAGCTGCTTCCGGAACTCTaGCATCTGTTCCTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: TVIPVPGAPKVQKSMDDQLLPEL*HLFLFF Trigger: GAAAAAGAGGAACAGATGGCAGAGTTCCGGAAGCAG...CTGATCGTCCATGGATTTTTGGACCTTTGGTGCTCCTGGAACTGGTATTACAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | TCTTCAAAATGTATCAGGGTTAAAATATTCTGGGAGCTGAACTGGGTTGCTGTGAGCTGCAACAGCGTCTaGTCCTGCTCTGATTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSKCIRVKIFWELNWVAVSCNSV*SCSDFS Trigger: GCTGAAATCAGAGCAGGAGCAGACGCTGTTGCAGCT...CACAGCAACCCAGTTCAGCTCCCAGAATATTTTAACCCTGATACATTTTGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | GCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTAGCAGCACCTCCTTCTaGTTCCGGAACTCTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: AVSPWYFPLYLYLFNPHCSSTSF*FRNSAI Trigger: GATGGCAGAGTTCCGGAAGCAGAAGGAGGTGCTGCT...ACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CCA 90 bp | TCTTCAAAATGTATCAGGGTTAAAATATTCTGGGAGCTGAACTGGGTTGCTGTGAGTGAGGTCAGCAGCTaGAAAGGGACCTGGAATCGA | + |
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Preference number: 4 (lower is better) Translates to: SSKCIRVKIFWELNWVAVSEVSS*KGTWNR Trigger: TCGATTCCAGGTCCCTTTCCAGCTGCTGACCTCACT...CACAGCAACCCAGTTCAGCTCCCAGAATATTTTAACCCTGATACATTTTGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CCA 90 bp | GATACTTATGGTGTTTCGTTGAGACTGATTTATAGTGTGCTTCTTTCAAGAACTCCCCAGTGCCAGCCTTaGTGCCCAGCATTCTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: DTYGVSLRLIYSVLLSRTPQCQP*CPAFCA Trigger: TGCACAGAATGCTGGGCACCAAGGCTGGCACTGGGG...AGTTCTTGAAAGAAGCACACTATAAATCAGTCTCAACGAAACACCATAAGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR TCA 90 bp | ACTGTAATACCAGTTCCAGGAGCACCAAAGGTCCAAAAATCCATGGACGATCAGCTGTTTACACCAGTTTaGGCTCTGTCTTCTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: TVIPVPGAPKVQKSMDDQLFTPV*ALSSSL Trigger: CAATGAAGAAGACAGAGCTCAAACTGGTGTAAACAG...CTGATCGTCCATGGATTTTTGGACCTTTGGTGCTCCTGGAACTGGTATTACAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | TTCTTCCTTTACATATTAAACATTGGAAAGTCGATAGATCCAAGATGTGGAAGCCAGTGCCAGCCTTGGTaGCCAGCATTCTGTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: FFLYILNIGKSIDPRCGSQCQPW*PAFCAP Trigger: TGGTGCACAGAATGCTGGGCACCAAGGCTGGCACTG...GCTTCCACATCTTGGATCTATCGACTTTCCAATGTTTAATATGTAAAGGAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CCA 90 bp | TTTAGCCTACTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTCGGAACTGTAGACTCTaGAAGCCTGATGCTGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: FSLLISEILLLAHGIFLCRNCRL*KPDAGD Trigger: GTCTCCAGCATCAGGCTTCCAGAGTCTACAGTTCCG...ACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAGTAGGCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CCA 90 bp | ACTGTAATACCAGTTCCAGGAGCACCAAAGGTCCAAAAATCCATGGACGATCAGCTGACATGGCCATTTTaGAAGATTTCACGAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: TVIPVPGAPKVQKSMDDQLTWPF*KISRTE Trigger: TTCTGTTCGTGAAATCTTCCAAAATGGCCATGTCAG...CTGATCGTCCATGGATTTTTGGACCTTTGGTGCTCCTGGAACTGGTATTACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CCA 90 bp | TCTTCAAAATGTATCAGGGTTAAAATATTCTGGGAGCTGAACTGGGTTGCTGTGGATCGGATTCATCTTTaGTACCCAGTGTCTGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: SSKCIRVKIFWELNWVAVDRIHL*YPVSGN Trigger: GTTCCCAGACACTGGGTACCAAAGATGAATCCGATC...CACAGCAACCCAGTTCAGCTCCCAGAATATTTTAACCCTGATACATTTTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR TCA 90 bp | AAAGTCGATAGATCCAAGATGTGGAAGCTAGCGAACAGATGGTCCCACTTTACAGAGTCGGTTTTAGCCTaGATCCTTAGAAATTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KVDRSKMWKLANRWSHFTESVLA*ILRNSS Trigger: AGAAGAATTTCTAAGGATTCAGGCTAAAACCGACTC...TGTAAAGTGGGACCATCTGTTCGCTAGCTTCCACATCTTGGATCTATCGACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR TCA 90 bp | TTTGCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACCCGATTCATCGCTGCTaGAGTAAGAGCTGTCACTGT | + |
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Preference number: 4 (lower is better) Translates to: FAVSPWYFPLYLYLFNPHPIHRC*SKSCHC Trigger: ACAGTGACAGCTCTTACTTCAGCAGCGATGAATCGG...GTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | TTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTGTGTTCCTACACTGTTTCCTaGAAACGGGCACCCACTCAT | + |
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Preference number: 4 (lower is better) Translates to: LAHGIFLCIYICLTLTVCSYTVS*KRAPTH Trigger: ATGAGTGGGTGCCCGTTTGCAGGAAACAGTGTAGGA...ACACACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | TTACGACAGCCAACACTGACACAGAAGAAAGAAGAGCATCTTCAAAATGTATCAGCATTCTGTGCACCATaGACACATGATTATATCTCC | + |
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Preference number: 4 (lower is better) Translates to: LRQPTLTQKKEEHLQNVSAFCAP*THDYIS Trigger: GGAGATATAATCATGTGTGCATGGTGCACAGAATGC...TGATACATTTTGAAGATGCTCTTCTTTCTTCTGTGTCAGTGTTGGCTGTCGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR GCA 90 bp | TTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTGTGTAAAATATATCATCAGTaGTCCCTGGAGTGCACGGTA | + |
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Preference number: 4 (lower is better) Translates to: LAHGIFLCIYICLTLTVCKIYHQ*SLECTV Trigger: TACCGTGCACTCCAGGGAGCACTGATGATATATTTT...ACACACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| 3UTR CAA 72 bp | TACAGTGCAGCGAAGACTGATACTTATGGTGTTTCGTaGAGACTGATTTATAGTGTGCTTCTTTCAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: YSAAKTDTYGVS*RLIYSVLLSRT Trigger: AGTTCTTGAAAGAAGCACACTATAAATCAGTCTCAACGAAACACCATAAGTATCAGTCTTCGCTGCACTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR TCA 90 bp | CTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCGGGACTCTCAAGCTCTaGAGAACACCAATCTTATTT | + |
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Preference number: 4 (lower is better) Translates to: LISEILLLAHGIFLCIYIGTLKL*RTPILF Trigger: AAATAAGATTGGTGTTCTTCAGAGCTTGAGAGTCCC...GATATAAATACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR TCA 90 bp | TTCTTCCTTTACATATTAAACATTGGAAAGTCGATAGATCCAAGATGTGGAAGCTGCACCATGCACACATaGTTATATCTCCATTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: FFLYILNIGKSIDPRCGSCTMHT*LYLHLV Trigger: GACCAAATGGAGATATAATCATGTGTGCATGGTGCA...GCTTCCACATCTTGGATCTATCGACTTTCCAATGTTTAATATGTAAAGGAAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CCA 90 bp | GCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTAATAGGTGCTCGTCATaGATTTTGTTCCCTTTTACT | + |
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Preference number: 4 (lower is better) Translates to: AVSPWYFPLYLYLFNPHCNRCSS*ILFPFT Trigger: AGTAAAAGGGAACAAAATCCATGACGAGCACCTATT...ACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS GCA 90 bp | CGCTCACAGTTGAACGCAGGTAATGATAGCCTGAGGATCCCCCAGTaGCAGCCTTGGTGCCCAGCATTCTGTGCACCATGCACACATGAT | + |
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Preference number: 5 (lower is better) Translates to: RSQLNAGNDSLRIPQ*QPWCPAFCAPCTHD Trigger: ATCATGTGTGCATGGTGCACAGAATGCTGGGCACCAAGGCTGGCACTGGGGGATCCTCAGGCTATCATTACCTGCGTTCAACTGTGAGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS TCA 90 bp | TTCCAGCCATGCCTCCACCAGCTGCAACAGCGTCTGCTCCTGCTCTaGTTTCAGCAACAGCTCATTGTAGTCTCCTCCAAAGTTATCACG | + |
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Preference number: 5 (lower is better) Translates to: FQPCLHQLQQRLLLL*FQQQLIVVSSKVIT Trigger: CGTGATAACTTTGGAGGAGACTACAATGAGCTGTTGCTGAAATCAGAGCAGGAGCAGACGCTGTTGCAGCTGGTGGAGGCATGGCTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS GCA 90 bp | TTTGGCTCTAAACCAGGTGTTCTTTCCAGCCATGCCTCCACCAGCTaGAACAGCGTCTGCTCCTGCTCTGATTTCAGCAACAGCTCATTG | + |
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Preference number: 5 (lower is better) Translates to: FGSKPGVLSSHASTS*NSVCSCSDFSNSSL Trigger: CAATGAGCTGTTGCTGAAATCAGAGCAGGAGCAGACGCTGTTGCAGCTGGTGGAGGCATGGCTGGAAAGAACACCTGGTTTAGAGCCAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS CCA 90 bp | TTGAACGCAGGTAATGATAGCCTGAGGATCCCCCAGTGCCAGCCTTaGTGCCCAGCATTCTGTGCACCATGCACACATGATTATATCTCC | + |
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Preference number: 5 (lower is better) Translates to: LNAGNDSLRIPQCQP*CPAFCAPCTHDYIS Trigger: GGAGATATAATCATGTGTGCATGGTGCACAGAATGCTGGGCACCAAGGCTGGCACTGGGGGATCCTCAGGCTATCATTACCTGCGTTCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS GCA 90 bp | CTCATCAAACAAGCAGAGCAGCACCTCCTTCTGCTTCCGGAACTCTaGCATCTGTTCCTCTTTTTCTTCAGAGTCGGTTTTAGCCTGAAT | + |
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Preference number: 5 (lower is better) Translates to: LIKQAEQHLLLLPEL*HLFLFFFRVGFSLN Trigger: ATTCAGGCTAAAACCGACTCTGAAGAAAAAGAGGAACAGATGGCAGAGTTCCGGAAGCAGAAGGAGGTGCTGCTCTGCTTGTTTGATGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS TCA 90 bp | CTCCCTGTAAAAATATATCATCAGTGCTCCCTGGAGTGCACGGTATaGCAGTCGTCGTTCACCTTTACTCAGAAGGTAGTCATGACGCTT | + |
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Preference number: 5 (lower is better) Translates to: LPVKIYHQCSLECTV*QSSFTFTQKVVMTL Trigger: AAGCGTCATGACTACCTTCTGAGTAAAGGTGAACGACGACTGTCATACCGTGCACTCCAGGGAGCACTGATGATATATTTTTACAGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS-3UTR CAA 90 bp | TTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTGTGTTGCTGTACCAGGAGCTaGAAGATGACCACCACACGA | + |
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Preference number: 5 (lower is better) Translates to: LAHGIFLCIYICLTLTVCCCTRS*KMTTTR Trigger: TCGTGTGGTGGTCATCTTCAAGCTCCTGGTACAGCA...ACACACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | ACTGTAATACCAGTTCCAGGAGCACCAAAGGTCCAAAAATCCATGGACGATCAGTTCACTCTGAAGTTCTaGCGCATTCAAAATCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TVIPVPGAPKVQKSMDDQFTLKF*RIQNLF Trigger: GAAAAGATTTTGAATGCGCAAGAACTTCAGAGTGAA...CTGATCGTCCATGGATTTTTGGACCTTTGGTGCTCCTGGAACTGGTATTACAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | TTTAGCCTACTGATTTCTGAGATTTTGCTGTTAGCCCATGGTATTTTCCTCTGTGCTCTGTCTTCTTCATaGTCCTCCATAGATACGTTT | + |
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Preference number: 5 (lower is better) Translates to: FSLLISEILLLAHGIFLCALSSS*SSIDTF Trigger: AAACGTATCTATGGAGGACAATGAAGAAGACAGAGC...ACAGAGGAAAATACCATGGGCTAACAGCAAAATCTCAGAAATCAGTAGGCTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | TTTGCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACCCTGACATGGCCATTTaGGAAGATTTCACGAACAGA | + |
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Preference number: 5 (lower is better) Translates to: FAVSPWYFPLYLYLFNPHPDMAI*EDFTNR Trigger: TCTGTTCGTGAAATCTTCCAAAATGGCCATGTCAGG...GTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | GCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTAAATCCACAAAAACCTaGTACCTGTCGCTCACAGTT | + |
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Preference number: 5 (lower is better) Translates to: AVSPWYFPLYLYLFNPHCKSTKT*YLSLTV Trigger: AACTGTGAGCGACAGGTACAAGGTTTTTGTGGATTT...ACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | GCTGTTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTTCTGTTTACACCAGTTaGAGCTCTGTCTTCTTCATT | + |
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Preference number: 5 (lower is better) Translates to: AVSPWYFPLYLYLFNPHCSVYTS*SSVFFI Trigger: AATGAAGAAGACAGAGCTCAAACTGGTGTAAACAGA...ACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | TTAGCCCATGGTATTTTCCTCTGTATTTATATCTGTTTAACCCTCACTGTGTGTTGCTCGTCATGGATTTaGTTCCCTTTTACTTCACTC | + |
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Preference number: 5 (lower is better) Translates to: LAHGIFLCIYICLTLTVCCSSWI*FPFTSL Trigger: GAGTGAAGTAAAAGGGAACAAAATCCATGACGAGCA...ACACACAGTGAGGGTTAAACAGATATAAATACAGAGGAAAATACCATGGGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS-3UTR CAA 90 bp | TCTTCAAAATGTATCAGGGTTAAAATATTCTGGGAGCTGAACTGGGTTGCTGTGTATTCTCTGAAGTCATaGAAGTCCAAAGCAGTCATT | + |
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Preference number: 5 (lower is better) Translates to: SSKCIRVKIFWELNWVAVYSLKS*KSKAVI Trigger: AATGACTGCTTTGGACTTCAATGACTTCAGAGAATA...CACAGCAACCCAGTTCAGCTCCCAGAATATTTTAACCCTGATACATTTTGAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS GCA 72 bp | TTGAACGCAGGTAATGATAGCCTGAGGATCCCCCAGTaGCAGCCTTGGTGCCCAGCATTCTGTGCACCATGC | + |
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Preference number: 6 (lower is better) Translates to: LNAGNDSLRIPQ*QPWCPAFCAPC Trigger: GCATGGTGCACAGAATGCTGGGCACCAAGGCTGGCACTGGGGGATCCTCAGGCTATCATTACCTGCGTTCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS GCA 72 bp | AAACCAGGTGTTCTTTCCAGCCATGCCTCCACCAGCTaGAACAGCGTCTGCTCCTGCTCTGATTTCAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: KPGVLSSHASTS*NSVCSCSDFSN Trigger: GTTGCTGAAATCAGAGCAGGAGCAGACGCTGTTGCAGCTGGTGGAGGCATGGCTGGAAAGAACACCTGGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS TCA 72 bp | TGCCTCCACCAGCTGCAACAGCGTCTGCTCCTGCTCTaGTTTCAGCAACAGCTCATTGTAGTCTCCTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: CLHQLQQRLLLL*FQQQLIVVSSK Trigger: TTTGGAGGAGACTACAATGAGCTGTTGCTGAAATCAGAGCAGGAGCAGACGCTGTTGCAGCTGGTGGAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS CAA 90 bp | AGGAGCTTGAAGATGACCACCACACGATGCATCCGAGCTATCACCTaGAGCATGTTCCTCTCATCCCTGACATGGCCATTTTGGAAGATT | + |
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Preference number: 6 (lower is better) Translates to: RSLKMTTTRCIRAIT*SMFLSSLTWPFWKI Trigger: AATCTTCCAAAATGGCCATGTCAGGGATGAGAGGAACATGCTCAAGGTGATAGCTCGGATGCATCGTGTGGTGGTCATCTTCAAGCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS CCA 72 bp | CCAATCTTATTTTCCAGCAGCCGGAACTGTAGACTCTaGAAGCCTGATGCTGGAGACAGGTATTCTCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: PILFSSSRNCRL*KPDAGDRYSLK Trigger: CTTCAGAGAATACCTGTCTCCAGCATCAGGCTTCCAGAGTCTACAGTTCCGGCTGCTGGAAAATAAGATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS CAA 90 bp | AGACTCTGGAAGCCTGATGCTGGAGACAGGTATTCTCTGAAGTCATaGAAGTCCAAAGCAGTCATTGTTTCCAGAACCGAGAACTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: RLWKPDAGDRYSLKS*KSKAVIVSRTENCC Trigger: ACAGCAGTTCTCGGTTCTGGAAACAATGACTGCTTTGGACTTCAATGACTTCAGAGAATACCTGTCTCCAGCATCAGGCTTCCAGAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS TCA 72 bp | AAAATATATCATCAGTGCTCCCTGGAGTGCACGGTATaGCAGTCGTCGTTCACCTTTACTCAGAAGGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: KIYHQCSLECTV*QSSFTFTQKVV Trigger: GACTACCTTCTGAGTAAAGGTGAACGACGACTGTCATACCGTGCACTCCAGGGAGCACTGATGATATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS CCA 72 bp | TTGAGCATGTTCCTCTCATCCCTGACATGGCCATTTTaGAAGATTTCACGAACAGAATCTAGTTCCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LSMFLSSLTWPF*KISRTESSSQR Trigger: CCTCTGGGAACTAGATTCTGTTCGTGAAATCTTCCAAAATGGCCATGTCAGGGATGAGAGGAACATGCTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS CAA 72 bp | AAGCCTGATGCTGGAGACAGGTATTCTCTGAAGTCATaGAAGTCCAAAGCAGTCATTGTTTCCAGAACCGAG | + |
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Preference number: 6 (lower is better) Translates to: KPDAGDRYSLKS*KSKAVIVSRTE Trigger: CTCGGTTCTGGAAACAATGACTGCTTTGGACTTCAATGACTTCAGAGAATACCTGTCTCCAGCATCAGGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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| CDS TCA 72 bp | ATAAGTCCTCCTTTGCTGGCTCTGTTTACACCAGTTTaGGCTCTGTCTTCTTCATTGTCCTCCATAGATACG | + |
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Preference number: 6 (lower is better) Translates to: ISPPLLALFTPV*ALSSSLSSIDT Trigger: CGTATCTATGGAGGACAATGAAGAAGACAGAGCTCAAACTGGTGTAAACAGAGCCAGCAAAGGAGGACTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS CAA 72 bp | GATAAGTCCTCCTTTGCTGGCTCTGTTTACACCAGTTaGAGCTCTGTCTTCTTCATTGTCCTCCATAGATAC | + |
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Preference number: 6 (lower is better) Translates to: DKSSFAGSVYTS*SSVFFIVLHRY Trigger: GTATCTATGGAGGACAATGAAGAAGACAGAGCTCAAACTGGTGTAAACAGAGCCAGCAAAGGAGGACTTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS CAA 90 bp | ATTGCCATAGATAAGTCCTCCTTTGCTGGCTCTGTTTACACCAGTTaGAGCTCTGTCTTCTTCATTGTCCTCCATAGATACGTTTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: IAIDKSSFAGSVYTS*SSVFFIVLHRYVFQ Trigger: TTGAAAAACGTATCTATGGAGGACAATGAAGAAGACAGAGCTCAAACTGGTGTAAACAGAGCCAGCAAAGGAGGACTTATCTATGGCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029645.14 |
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| CDS TCA 72 bp | ATCTGTTCCTCTTTTTCTTCAGAGTCGGTTTTAGCCTaGATCCTTAGAAATTCTTCTTCCAGGCCTTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: ICSSFSSESVLA*ILRNSSSRPFK Trigger: CTTGAAAGGCCTGGAAGAAGAATTTCTAAGGATTCAGGCTAAAACCGACTCTGAAGAAAAAGAGGAACAGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029645.14 ENSMUST00000193879.2 |
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