Pregenerated sensors for TDGF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032494Ensembl transcript IDs: ENSMUST00000035075.13, ENSMUST00000197460.5, ENSMUST00000199196.2, ENSMUST00000199782.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR GCA 90 bp | GAGACAGGGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGAGTCACTTCCCCATCTaGTGCTCCCTCTGCACAGAC | + |
Preference number: 2 (lower is better) Translates to: ETGFLCRPVCPGTQEIYLSHFPI*CSLCTD Trigger: GTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACT...CAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACCCTGTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR-3UTR TCA 90 bp | CGGGTGTTTGGGTTTTCTGTGAGGGTCTTGCCATTCAGTCTTTGTTGGCCTGGTATACCTGCCTTTGCCTaGTTTAAGGTAGACACCACC | + |
Preference number: 2 (lower is better) Translates to: RVFGFSVRVLPFSLCWPGIPAFA*FKVDTT Trigger: GGTGGTGTCTACCTTAAATCAGGCAAAGGCAGGTAT...ACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCAAACACCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR-3UTR GCA 90 bp | TGTTGTAGCCTCCTGAGAGCTGACATTAATAGTGTGCACCACTGTGCTTGGCTGATCTGCTGCTCCCTCTaGACAGACCCTCATTACTTC | + |
Preference number: 2 (lower is better) Translates to: CCSLLRADINSVHHCAWLICCSL*TDPHYF Trigger: GAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGAT...CAGCCAAGCACAGTGGTGCACACTATTAATGTCAGCTCTCAGGAGGCTACAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR-3UTR CCA 90 bp | TGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCCTGATTCGCTGTTACAGTGCTTaGCACACACGCCATAGTTTT | + |
Preference number: 2 (lower is better) Translates to: CVGLSVLELKKYTCLCLIRCYSA*HTRHSF Trigger: AAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCG...AATCAGGCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR-3UTR CCA 90 bp | TCCCCAGTCTTAGTCACTTCCCCATCTGCTGCTCCCTCTGCACAGACCCTCATTCTTCCAGTTGCACATTaGGATTTAATAATAACCTTC | + |
Preference number: 2 (lower is better) Translates to: SPVLVTSPSAAPSAQTLILPVAH*DLIITF Trigger: GAAGGTTATTATTAAATCCCAATGTGCAACTGGAAG...AATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR-3UTR TCA 90 bp | AGACAGGGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCTGTTTTCAGCTACTCTaGATTTACTTCCAGTTGCAC | + |
Preference number: 2 (lower is better) Translates to: RQGFCVGLSVLELKKYTCCFQLL*IYFQLH Trigger: GTGCAACTGGAAGTAAATTCAGAGTAGCTGAAAACA...GCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACCCTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR-3UTR CCA 90 bp | ACCTCCGTAAACATCAATCAAACAATCCACTCTGTTTCCCCAGTCTTAGTCACTCGCTGTTACAGTGCTTaGCACACACGCCATAGTTTT | + |
Preference number: 2 (lower is better) Translates to: TSVNINQTIHSVSPVLVTRCYSA*HTRHSF Trigger: AAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCG...AGTGACTAAGACTGGGGAAACAGAGTGGATTGTTTGATTGATGTTTACGGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR-3UTR TCA 90 bp | AATGTAACTCGCTGTTACAGTGCTTGGCACACACGCCATAGTTTTCCAGAAAGAGAGCATCAAGATGAATaGCATCTTTGCTATGGCACT | + |
Preference number: 2 (lower is better) Translates to: NVTRCYSAWHTRHSFPEREHQDE*HLCYGT Trigger: AGTGCCATAGCAAAGATGTCATTCATCTTGATGCTC...TCTTTCTGGAAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCGAGTTACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR-3UTR CCA 90 bp | GACACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAATCTTTGCTATGGCACTaGCATGGAATTCACATGACA | + |
Preference number: 2 (lower is better) Translates to: DTTTSLLKDNLAVFSYSESLLWH*HGIHMT Trigger: TGTCATGTGAATTCCATGCCAGTGCCATAGCAAAGA...TTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR-3UTR CCA 90 bp | GGGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCTTCCAGTTGCACATTaGGATTTAATAATAACCTTC | + |
Preference number: 2 (lower is better) Translates to: GFLCRPVCPGTQEIYLPLLPVAH*DLIITF Trigger: GAAGGTTATTATTAAATCCCAATGTGCAACTGGAAG...CAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR-3UTR TCA 90 bp | ACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAATTTGAGCATCAAGATGAATaGCATCTTTGCTATGGCACT | + |
Preference number: 2 (lower is better) Translates to: TTTSLLKDNLAVFSYSEFEHQDE*HLCYGT Trigger: AGTGCCATAGCAAAGATGTCATTCATCTTGATGCTC...AAATTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR GCA 72 bp | CCCAGTCTTAGTCACTTCCCCATCTGCTGCTCCCTCTaGACAGACCCTCATTACTTCCTCAACTCCCTCGTA | + |
Preference number: 3 (lower is better) Translates to: PSLSHFPICCSL*TDPHYFLNSLV Trigger: TACGAGGGAGTTGAGGAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR GCA 72 bp | CCACTCTGTTTCCCCAGTCTTAGTCACTTCCCCATCTaGTGCTCCCTCTGCACAGACCCTCATTACTTCCTC | + |
Preference number: 3 (lower is better) Translates to: PLCFPSLSHFPI*CSLCTDPHYFL Trigger: GAGGAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGAAACAGAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR-3UTR CAA 90 bp | TGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCCTGATTGGAGTCCCGGATGCTTaGAGGTCCTGGTCCATCACG | + |
Preference number: 3 (lower is better) Translates to: CVGLSVLELKKYTCLCLIGVPDA*RSWSIT Trigger: CGTGATGGACCAGGACCTCAAAGCATCCGGGACTCC...AATCAGGCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197460.5 |
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3UTR CCA 72 bp | GGGTTTTCTGTGAGGGTCTTGCCATTCAGTCTTTGTTaGCCTGGTACTCTGTACATAGCCCAGGTTGGACAT | + |
Preference number: 3 (lower is better) Translates to: GFSVRVLPFSLC*PGTLYIAQVGH Trigger: ATGTCCAACCTGGGCTATGTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR TCA 72 bp | CTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCCTaGTTTAAGGTAGACACCACCACCTCCCTGCTTAAA | + |
Preference number: 3 (lower is better) Translates to: LSWNSRNIPAFA*FKVDTTTSLLK Trigger: TTTAAGCAGGGAGGTGGTGGTGTCTACCTTAAATCAGGCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR GCA 72 bp | TATCCCTACCTCCTGAGGGCTGGGATTAAAGCCATCTaGCACAATGCCTGGTCCATTAATTTTCTTTTAAGA | + |
Preference number: 3 (lower is better) Translates to: YPYLLRAGIKAI*HNAWSINFLLR Trigger: TCTTAAAAGAAAATTAATGGACCAGGCATTGTGGCAGATGGCTTTAATCCCAGCCCTCAGGAGGTAGGGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR CCA 72 bp | CTGAGAGCTGACATTAATAGTGTGCACCACTGTGCTTaGCTGAAGAACTTAGCTTTTAAATTCCCAGTACCT | + |
Preference number: 3 (lower is better) Translates to: LRADINSVHHCA*LKNLAFKFPVP Trigger: AGGTACTGGGAATTTAAAAGCTAAGTTCTTCAGCCAAGCACAGTGGTGCACACTATTAATGTCAGCTCTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR GCA 72 bp | TTAGCTGTTTTCAGCTACTCTGAATTTACTTCCAGTTaGACATTGGGATTTAATAATAACCTTCAGAACTGT | + |
Preference number: 3 (lower is better) Translates to: LAVFSYSEFTSS*TLGFNNNLQNC Trigger: ACAGTTCTGAAGGTTATTATTAAATCCCAATGTGCAACTGGAAGTAAATTCAGAGTAGCTGAAAACAGCTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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CDS-3UTR CCA 90 bp | TCCCCAGTCTTAGTCACTTCCCCATCTGCTGCTCCCTCTGCACAGACCCTCATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACAC | + |
Preference number: 4 (lower is better) Translates to: SPVLVTSPSAAPSAQTLIQTHWK*PQAKPH Trigger: GTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTG...AATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS-3UTR CCA 90 bp | GACACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAAGGAAGACAGTGGAGCTaGCCGTGCCAGCATCTGCAC | + |
Preference number: 4 (lower is better) Translates to: DTTTSLLKDNLAVFSYSEGRQWS*PCQHLH Trigger: GTGCAGATGCTGGCACGGCCAGCTCCACTGTCTTCC...TTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR CAA 72 bp | TGGGTTTTCTGTGAGGGTCTTGCCATTCAGTCTTTGTaGGCCTGGTACTCTGTACATAGCCCAGGTTGGACA | + |
Preference number: 4 (lower is better) Translates to: WVFCEGLAIQSL*AWYSVHSPGWT Trigger: TGTCCAACCTGGGCTATGTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS-3UTR TCA 90 bp | TGTTGTAGCCTCCTGAGAGCTGACATTAATAGTGTGCACCACTGTGCTTGGCTGAAATGCTGTTATCTCTaGTGGCAAGGTCTCTCCCAG | + |
Preference number: 4 (lower is better) Translates to: CCSLLRADINSVHHCAWLKCCYL*WQGLSQ Trigger: CTGGGAGAGACCTTGCCATCAGAGATAACAGCATTT...CAGCCAAGCACAGTGGTGCACACTATTAATGTCAGCTCTCAGGAGGCTACAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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3UTR CAA 72 bp | AAAGAGACTCGGGTGTTTGGGTTTTCTGTGAGGGTCTaGCCATTCAGTCTTTGTTGGCCTGGTACTCTGTAC | + |
Preference number: 4 (lower is better) Translates to: KETRVFGFSVRV*PFSLCWPGTLY Trigger: GTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCAAACACCCGAGTCTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS-3UTR TCA 90 bp | GGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCAAATGCTGTTATCTCTaGTGGCAAGGTCTCTCCCAG | + |
Preference number: 4 (lower is better) Translates to: GFCVGLSVLELKKYTCLCKCCYL*WQGLSQ Trigger: CTGGGAGAGACCTTGCCATCAGAGATAACAGCATTT...GCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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CDS-3UTR GCA 90 bp | ACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAATTTCAGTGGAGCTGGCCGTaGCAGCATCTGCACAGGGAA | + |
Preference number: 4 (lower is better) Translates to: TTTSLLKDNLAVFSYSEFQWSWP*QHLHRE Trigger: TTCCCTGTGCAGATGCTGGCACGGCCAGCTCCACTG...AAATTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS-3UTR CCA 90 bp | GCTAGGAATGTAACTCGCTGTTACAGTGCTTGGCACACACGCCATAGTTTTCCAACGGCAGGTTCTTTCTaGTCCCAAATGCTGTTATCT | + |
Preference number: 4 (lower is better) Translates to: ARNVTRCYSAWHTRHSFPTAGSF*SQMLLS Trigger: AGATAACAGCATTTGGGACCAGAAAGAACCTGCCGT...TGGAAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCGAGTTACATTCCTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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CDS-3UTR CCA 90 bp | CCTCATTACTTCCTCAACTCCCTCGTAGGATGCTTTTTCCTTTTTGAGACAGGGCAAATTCAAACGCACTaGAAATGGCCACAAGCAAAA | + |
Preference number: 4 (lower is better) Translates to: PHYFLNSLVGCFFLFETGQIQTH*KWPQAK Trigger: TTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTG...CCCTGTCTCAAAAAGGAAAAAGCATCCTACGAGGGAGTTGAGGAAGTAATGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS-3UTR CCA 90 bp | CAGCAAGTTTTATTAAGCGACTTACCTTTCAGGGAAATAACTTTCATGGTTGGACAAACGCACTGGAAATaGCCACAAGCAAAACCACAC | + |
Preference number: 4 (lower is better) Translates to: QQVLLSDLPFREITFMVGQTHWK*PQAKPH Trigger: GTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTG...TCCAACCATGAAAGTTATTTCCCTGAAAGGTAAGTCGCTTAATAAAACTTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197460.5 |
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CDS-3UTR CCA 90 bp | GACACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAACAAATTCAAACGCACTaGAAATGGCCACAAGCAAAA | + |
Preference number: 4 (lower is better) Translates to: DTTTSLLKDNLAVFSYSEQIQTH*KWPQAK Trigger: TTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTG...TTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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3UTR CAA 72 bp | ATAATTGTATATAGCTTGGAGAAAGCCTTCGTACTTTaGCAGAAAAGAGACTCGGGTGTTTGGGTTTTCTGT | + |
Preference number: 4 (lower is better) Translates to: IIVYSLEKAFVL*QKRDSGVWVFC Trigger: ACAGAAAACCCAAACACCCGAGTCTCTTTTCTGCAAAAGTACGAAGGCTTTCTCCAAGCTATATACAATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS-3UTR CAA 90 bp | CTTTTAAATTCCCAGTACCTCCGTAAACATCAATCAAACAATCCACTCTGTTTCGGAGTCCCGGATGCTTaGAGGTCCTGGTCCATCACG | + |
Preference number: 5 (lower is better) Translates to: LLNSQYLRKHQSNNPLCFGVPDA*RSWSIT Trigger: CGTGATGGACCAGGACCTCAAAGCATCCGGGACTCC...GAAACAGAGTGGATTGTTTGATTGATGTTTACGGAGGTACTGGGAATTTAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035075.13 |
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CDS CCA 72 bp | TCCCAGCAACGGGTCCAAATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACACTGGATGAGAAGTACC | + |
Preference number: 6 (lower is better) Translates to: SQQRVQIQTHWK*PQAKPHWMRST Trigger: GGTACTTCTCATCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035075.13 ENSMUST00000197460.5 |
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CDS CCA 72 bp | TCCCAGCAACGGGTCCAAATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACACTGGGAGAAGAAGATT | + |
Preference number: 6 (lower is better) Translates to: SQQRVQIQTHWK*PQAKPHWEKKI Trigger: AATCTTCTTCTCCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199196.2 |
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CDS CCA 72 bp | TACCAGCAACGGGTCCAAATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACACTGGATGAGAAGTACC | + |
Preference number: 6 (lower is better) Translates to: YQQRVQIQTHWK*PQAKPHWMRST Trigger: GGTACTTCTCATCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199782.2 |