RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TDGF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032494

Ensembl transcript IDs: ENSMUST00000035075.13, ENSMUST00000197460.5, ENSMUST00000199196.2, ENSMUST00000199782.2

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GAGACAGGGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGAGTCACTTCCCCATCTaGTGCTCCCTCTGCACAGAC +
Preference number: 2 (lower is better)
Translates to: ETGFLCRPVCPGTQEIYLSHFPI*CSLCTD
Trigger: GTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACT...CAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACCCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR-3UTR TCA 90 bp CGGGTGTTTGGGTTTTCTGTGAGGGTCTTGCCATTCAGTCTTTGTTGGCCTGGTATACCTGCCTTTGCCTaGTTTAAGGTAGACACCACC +
Preference number: 2 (lower is better)
Translates to: RVFGFSVRVLPFSLCWPGIPAFA*FKVDTT
Trigger: GGTGGTGTCTACCTTAAATCAGGCAAAGGCAGGTAT...ACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCAAACACCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR-3UTR GCA 90 bp TGTTGTAGCCTCCTGAGAGCTGACATTAATAGTGTGCACCACTGTGCTTGGCTGATCTGCTGCTCCCTCTaGACAGACCCTCATTACTTC +
Preference number: 2 (lower is better)
Translates to: CCSLLRADINSVHHCAWLICCSL*TDPHYF
Trigger: GAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGAT...CAGCCAAGCACAGTGGTGCACACTATTAATGTCAGCTCTCAGGAGGCTACAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR-3UTR CCA 90 bp TGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCCTGATTCGCTGTTACAGTGCTTaGCACACACGCCATAGTTTT +
Preference number: 2 (lower is better)
Translates to: CVGLSVLELKKYTCLCLIRCYSA*HTRHSF
Trigger: AAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCG...AATCAGGCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR-3UTR CCA 90 bp TCCCCAGTCTTAGTCACTTCCCCATCTGCTGCTCCCTCTGCACAGACCCTCATTCTTCCAGTTGCACATTaGGATTTAATAATAACCTTC +
Preference number: 2 (lower is better)
Translates to: SPVLVTSPSAAPSAQTLILPVAH*DLIITF
Trigger: GAAGGTTATTATTAAATCCCAATGTGCAACTGGAAG...AATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR-3UTR TCA 90 bp AGACAGGGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCTGTTTTCAGCTACTCTaGATTTACTTCCAGTTGCAC +
Preference number: 2 (lower is better)
Translates to: RQGFCVGLSVLELKKYTCCFQLL*IYFQLH
Trigger: GTGCAACTGGAAGTAAATTCAGAGTAGCTGAAAACA...GCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACCCTGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR-3UTR CCA 90 bp ACCTCCGTAAACATCAATCAAACAATCCACTCTGTTTCCCCAGTCTTAGTCACTCGCTGTTACAGTGCTTaGCACACACGCCATAGTTTT +
Preference number: 2 (lower is better)
Translates to: TSVNINQTIHSVSPVLVTRCYSA*HTRHSF
Trigger: AAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCG...AGTGACTAAGACTGGGGAAACAGAGTGGATTGTTTGATTGATGTTTACGGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR-3UTR TCA 90 bp AATGTAACTCGCTGTTACAGTGCTTGGCACACACGCCATAGTTTTCCAGAAAGAGAGCATCAAGATGAATaGCATCTTTGCTATGGCACT +
Preference number: 2 (lower is better)
Translates to: NVTRCYSAWHTRHSFPEREHQDE*HLCYGT
Trigger: AGTGCCATAGCAAAGATGTCATTCATCTTGATGCTC...TCTTTCTGGAAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCGAGTTACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR-3UTR CCA 90 bp GACACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAATCTTTGCTATGGCACTaGCATGGAATTCACATGACA +
Preference number: 2 (lower is better)
Translates to: DTTTSLLKDNLAVFSYSESLLWH*HGIHMT
Trigger: TGTCATGTGAATTCCATGCCAGTGCCATAGCAAAGA...TTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR-3UTR CCA 90 bp GGGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCTTCCAGTTGCACATTaGGATTTAATAATAACCTTC +
Preference number: 2 (lower is better)
Translates to: GFLCRPVCPGTQEIYLPLLPVAH*DLIITF
Trigger: GAAGGTTATTATTAAATCCCAATGTGCAACTGGAAG...CAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR-3UTR TCA 90 bp ACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAATTTGAGCATCAAGATGAATaGCATCTTTGCTATGGCACT +
Preference number: 2 (lower is better)
Translates to: TTTSLLKDNLAVFSYSEFEHQDE*HLCYGT
Trigger: AGTGCCATAGCAAAGATGTCATTCATCTTGATGCTC...AAATTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR GCA 72 bp CCCAGTCTTAGTCACTTCCCCATCTGCTGCTCCCTCTaGACAGACCCTCATTACTTCCTCAACTCCCTCGTA +
Preference number: 3 (lower is better)
Translates to: PSLSHFPICCSL*TDPHYFLNSLV
Trigger: TACGAGGGAGTTGAGGAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR GCA 72 bp CCACTCTGTTTCCCCAGTCTTAGTCACTTCCCCATCTaGTGCTCCCTCTGCACAGACCCTCATTACTTCCTC +
Preference number: 3 (lower is better)
Translates to: PLCFPSLSHFPI*CSLCTDPHYFL
Trigger: GAGGAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGAAACAGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR-3UTR CAA 90 bp TGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCCTGATTGGAGTCCCGGATGCTTaGAGGTCCTGGTCCATCACG +
Preference number: 3 (lower is better)
Translates to: CVGLSVLELKKYTCLCLIGVPDA*RSWSIT
Trigger: CGTGATGGACCAGGACCTCAAAGCATCCGGGACTCC...AATCAGGCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197460.5
3UTR CCA 72 bp GGGTTTTCTGTGAGGGTCTTGCCATTCAGTCTTTGTTaGCCTGGTACTCTGTACATAGCCCAGGTTGGACAT +
Preference number: 3 (lower is better)
Translates to: GFSVRVLPFSLC*PGTLYIAQVGH
Trigger: ATGTCCAACCTGGGCTATGTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR TCA 72 bp CTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCCTaGTTTAAGGTAGACACCACCACCTCCCTGCTTAAA +
Preference number: 3 (lower is better)
Translates to: LSWNSRNIPAFA*FKVDTTTSLLK
Trigger: TTTAAGCAGGGAGGTGGTGGTGTCTACCTTAAATCAGGCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR GCA 72 bp TATCCCTACCTCCTGAGGGCTGGGATTAAAGCCATCTaGCACAATGCCTGGTCCATTAATTTTCTTTTAAGA +
Preference number: 3 (lower is better)
Translates to: YPYLLRAGIKAI*HNAWSINFLLR
Trigger: TCTTAAAAGAAAATTAATGGACCAGGCATTGTGGCAGATGGCTTTAATCCCAGCCCTCAGGAGGTAGGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR CCA 72 bp CTGAGAGCTGACATTAATAGTGTGCACCACTGTGCTTaGCTGAAGAACTTAGCTTTTAAATTCCCAGTACCT +
Preference number: 3 (lower is better)
Translates to: LRADINSVHHCA*LKNLAFKFPVP
Trigger: AGGTACTGGGAATTTAAAAGCTAAGTTCTTCAGCCAAGCACAGTGGTGCACACTATTAATGTCAGCTCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR GCA 72 bp TTAGCTGTTTTCAGCTACTCTGAATTTACTTCCAGTTaGACATTGGGATTTAATAATAACCTTCAGAACTGT +
Preference number: 3 (lower is better)
Translates to: LAVFSYSEFTSS*TLGFNNNLQNC
Trigger: ACAGTTCTGAAGGTTATTATTAAATCCCAATGTGCAACTGGAAGTAAATTCAGAGTAGCTGAAAACAGCTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
CDS-3UTR CCA 90 bp TCCCCAGTCTTAGTCACTTCCCCATCTGCTGCTCCCTCTGCACAGACCCTCATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACAC +
Preference number: 4 (lower is better)
Translates to: SPVLVTSPSAAPSAQTLIQTHWK*PQAKPH
Trigger: GTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTG...AATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS-3UTR CCA 90 bp GACACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAAGGAAGACAGTGGAGCTaGCCGTGCCAGCATCTGCAC +
Preference number: 4 (lower is better)
Translates to: DTTTSLLKDNLAVFSYSEGRQWS*PCQHLH
Trigger: GTGCAGATGCTGGCACGGCCAGCTCCACTGTCTTCC...TTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR CAA 72 bp TGGGTTTTCTGTGAGGGTCTTGCCATTCAGTCTTTGTaGGCCTGGTACTCTGTACATAGCCCAGGTTGGACA +
Preference number: 4 (lower is better)
Translates to: WVFCEGLAIQSL*AWYSVHSPGWT
Trigger: TGTCCAACCTGGGCTATGTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS-3UTR TCA 90 bp TGTTGTAGCCTCCTGAGAGCTGACATTAATAGTGTGCACCACTGTGCTTGGCTGAAATGCTGTTATCTCTaGTGGCAAGGTCTCTCCCAG +
Preference number: 4 (lower is better)
Translates to: CCSLLRADINSVHHCAWLKCCYL*WQGLSQ
Trigger: CTGGGAGAGACCTTGCCATCAGAGATAACAGCATTT...CAGCCAAGCACAGTGGTGCACACTATTAATGTCAGCTCTCAGGAGGCTACAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
3UTR CAA 72 bp AAAGAGACTCGGGTGTTTGGGTTTTCTGTGAGGGTCTaGCCATTCAGTCTTTGTTGGCCTGGTACTCTGTAC +
Preference number: 4 (lower is better)
Translates to: KETRVFGFSVRV*PFSLCWPGTLY
Trigger: GTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCAAACACCCGAGTCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS-3UTR TCA 90 bp GGTTTCTGTGTAGGCCTGTCTGTCCTGGAACTCAAGAAATATACCTGCCTTTGCAAATGCTGTTATCTCTaGTGGCAAGGTCTCTCCCAG +
Preference number: 4 (lower is better)
Translates to: GFCVGLSVLELKKYTCLCKCCYL*WQGLSQ
Trigger: CTGGGAGAGACCTTGCCATCAGAGATAACAGCATTT...GCAAAGGCAGGTATATTTCTTGAGTTCCAGGACAGACAGGCCTACACAGAAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
CDS-3UTR GCA 90 bp ACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAATTTCAGTGGAGCTGGCCGTaGCAGCATCTGCACAGGGAA +
Preference number: 4 (lower is better)
Translates to: TTTSLLKDNLAVFSYSEFQWSWP*QHLHRE
Trigger: TTCCCTGTGCAGATGCTGGCACGGCCAGCTCCACTG...AAATTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS-3UTR CCA 90 bp GCTAGGAATGTAACTCGCTGTTACAGTGCTTGGCACACACGCCATAGTTTTCCAACGGCAGGTTCTTTCTaGTCCCAAATGCTGTTATCT +
Preference number: 4 (lower is better)
Translates to: ARNVTRCYSAWHTRHSFPTAGSF*SQMLLS
Trigger: AGATAACAGCATTTGGGACCAGAAAGAACCTGCCGT...TGGAAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCGAGTTACATTCCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
CDS-3UTR CCA 90 bp CCTCATTACTTCCTCAACTCCCTCGTAGGATGCTTTTTCCTTTTTGAGACAGGGCAAATTCAAACGCACTaGAAATGGCCACAAGCAAAA +
Preference number: 4 (lower is better)
Translates to: PHYFLNSLVGCFFLFETGQIQTH*KWPQAK
Trigger: TTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTG...CCCTGTCTCAAAAAGGAAAAAGCATCCTACGAGGGAGTTGAGGAAGTAATGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS-3UTR CCA 90 bp CAGCAAGTTTTATTAAGCGACTTACCTTTCAGGGAAATAACTTTCATGGTTGGACAAACGCACTGGAAATaGCCACAAGCAAAACCACAC +
Preference number: 4 (lower is better)
Translates to: QQVLLSDLPFREITFMVGQTHWK*PQAKPH
Trigger: GTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTG...TCCAACCATGAAAGTTATTTCCCTGAAAGGTAAGTCGCTTAATAAAACTTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197460.5
CDS-3UTR CCA 90 bp GACACCACCACCTCCCTGCTTAAAGATAATTTAGCTGTTTTCAGCTACTCTGAACAAATTCAAACGCACTaGAAATGGCCACAAGCAAAA +
Preference number: 4 (lower is better)
Translates to: DTTTSLLKDNLAVFSYSEQIQTH*KWPQAK
Trigger: TTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTG...TTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
3UTR CAA 72 bp ATAATTGTATATAGCTTGGAGAAAGCCTTCGTACTTTaGCAGAAAAGAGACTCGGGTGTTTGGGTTTTCTGT +
Preference number: 4 (lower is better)
Translates to: IIVYSLEKAFVL*QKRDSGVWVFC
Trigger: ACAGAAAACCCAAACACCCGAGTCTCTTTTCTGCAAAAGTACGAAGGCTTTCTCCAAGCTATATACAATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS-3UTR CAA 90 bp CTTTTAAATTCCCAGTACCTCCGTAAACATCAATCAAACAATCCACTCTGTTTCGGAGTCCCGGATGCTTaGAGGTCCTGGTCCATCACG +
Preference number: 5 (lower is better)
Translates to: LLNSQYLRKHQSNNPLCFGVPDA*RSWSIT
Trigger: CGTGATGGACCAGGACCTCAAAGCATCCGGGACTCC...GAAACAGAGTGGATTGTTTGATTGATGTTTACGGAGGTACTGGGAATTTAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035075.13
CDS CCA 72 bp TCCCAGCAACGGGTCCAAATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACACTGGATGAGAAGTACC +
Preference number: 6 (lower is better)
Translates to: SQQRVQIQTHWK*PQAKPHWMRST
Trigger: GGTACTTCTCATCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035075.13
ENSMUST00000197460.5
CDS CCA 72 bp TCCCAGCAACGGGTCCAAATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACACTGGGAGAAGAAGATT +
Preference number: 6 (lower is better)
Translates to: SQQRVQIQTHWK*PQAKPHWEKKI
Trigger: AATCTTCTTCTCCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199196.2
CDS CCA 72 bp TACCAGCAACGGGTCCAAATTCAAACGCACTGGAAATaGCCACAAGCAAAACCACACTGGATGAGAAGTACC +
Preference number: 6 (lower is better)
Translates to: YQQRVQIQTHWK*PQAKPHWMRST
Trigger: GGTACTTCTCATCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199782.2