RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TCSTV1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096284

Ensembl transcript IDs: ENSMUST00000178510.2, ENSMUST00000190512.2

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACAGGCATCAGGGTTCATaGGCTCCAAACACAGTTCTT +
Preference number: 2 (lower is better)
Translates to: AAKTQLPLCAFALTAEADRHQGS*APNTVL
Trigger: AAGAACTGTGTTTGGAGCCCATGAACCCTGATGCCT...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
3UTR CAA 90 bp AAACAAACAAACACAAACCAGATGGCTGCAAAGACACAACTGCCTTaGTGTGCCTTTGCTCTAACAGCAGAAGCTGACAGAAGGTCCCCT +
Preference number: 2 (lower is better)
Translates to: KQTNTNQMAAKTQLP*CAFALTAEADRRSP
Trigger: AGGGGACCTTCTGTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGGTTTGTGTTTGTTTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR TCA 90 bp CCAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGACCAGACCTTTCTCCCTaGGCAAGCTTGGGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: PDGCKDTTAFVCLCSNSRPDLSP*ASLGRV
Trigger: AACCCTCCCCAAGCTTGCTCAGGGAGAAAGGTCTGG...TCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACCTCCCTGAGCAAGCTTaGGGAGGGTTGGTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADLPEQA*GGLVWL
Trigger: AAGCCAGACCAACCCTCCCCAAGCTTGCTCAGGGAG...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR TCA 90 bp AACCAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCATGGCCAAAAGCCCTTTaGAACCATGCCCAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: NQMAAKTQLPLCAFALTAWPKAL*NHAQQP
Trigger: AGGCTGCTGGGCATGGTTTCAAAGGGCTTTTGGCCA...TGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACTCCTGGGGACACTTTTaGCTTCCTCTGACTCTCACT +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADSWGHF*LPLTLT
Trigger: AGTGAGAGTCAGAGGAAGCCAAAAGTGTCCCCAGGA...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACTGGGGAGGGTTGGTCTaGCTTCTCTGTATCTTTGTC +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADWGGLV*LLCIFV
Trigger: GACAAAGATACAGAGAAGCCAGACCAACCCTCCCCA...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR GCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACTCTGGAAGACCTCTGTaGCCTTCTTCATGGCAGAAT +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADSGRPL*PSSWQN
Trigger: ATTCTGCCATGAAGAAGGGCACAGAGGTCTTCCAGA...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACGTTTTCCACATCTCCTaGGGACACTTTTGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADVFHIS*GHFWLP
Trigger: AGGAAGCCAAAAGTGTCCCCAGGAGATGTGGAAAAC...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CCA 90 bp AACCAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAAAGCTTGGGGAGGGTTaGTCTGGCTTCTCTGTATCT +
Preference number: 4 (lower is better)
Translates to: NQMAAKTQLPLCAFALTAKLGEG*SGFSVS
Trigger: AGATACAGAGAAGCCAGACCAACCCTCCCCAAGCTT...TGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR TCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACTCAGAGCAGTGGCTTTaGTCTTTGCCTAAACAAAGT +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADSEQWL*SLPKQS
Trigger: ACTTTGTTTAGGCAAAGATCAAAGCCACTGCTCTGA...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CCA 90 bp AACCAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCACTGTGCCCTTCTTCATaGCAGAATTCAATCTTCGGT +
Preference number: 4 (lower is better)
Translates to: NQMAAKTQLPLCAFALTALCPSS*QNSIFG
Trigger: ACCGAAGATTGAATTCTGCCATGAAGAAGGGCACAG...TGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
3UTR CAA 72 bp AACACAAACCAGATGGCTGCAAAGACACAACTGCCTTaGTGTGCCTTTGCTCTAACAGCAGAAGCTGACAGA +
Preference number: 4 (lower is better)
Translates to: NTNQMAAKTQLP*CAFALTAEADR
Trigger: TCTGTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGGTTTGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR GCA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACAAACTGGGAATGGACTaGATCATCTTCTTGGCTTTA +
Preference number: 4 (lower is better)
Translates to: AAKTQLPLCAFALTAEADKLGMD*IIFLAL
Trigger: TAAAGCCAAGAAGATGATGCAGTCCATTCCCAGTTT...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR GCA 90 bp CAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAAGTGGCTTTGATCTTTaGCTAAACAAAGTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: QMAAKTQLPLCAFALTAESGFDL*LNKVPQ
Trigger: CTGAGGCACTTTGTTTAGGCAAAGATCAAAGCCACT...TTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS TCA 90 bp GGCAGTCTCCACCGTCACAGGTCACAAGATCCAGACCTTTCTCCCTaGGCAAGCTTGGGGAGGGTTGGTCTGGCTTCTCTGTATCTTTGT +
Preference number: 5 (lower is better)
Translates to: GSLHRHRSQDPDLSP*ASLGRVGLASLYLC
Trigger: ACAAAGATACAGAGAAGCCAGACCAACCCTCCCCAAGCTTGCTCAGGGAGAAAGGTCTGGATCTTGTGACCTGTGACGGTGGAGACTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS-3UTR CAA 90 bp CCAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAATGGCCAAAAGCCCTTaGAAACCATGCCCAGCAGCC +
Preference number: 5 (lower is better)
Translates to: PDGCKDTTAFVCLCSNSRMAKSP*KPCPAA
Trigger: GGCTGCTGGGCATGGTTTCAAAGGGCTTTTGGCCAT...TCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CAA 90 bp AACCAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCACTCCTGGGGACACTTTaGGCTTCCTCTGACTCTCAC +
Preference number: 5 (lower is better)
Translates to: NQMAAKTQLPLCAFALTALLGTL*ASSDSH
Trigger: GTGAGAGTCAGAGGAAGCCAAAAGTGTCCCCAGGAG...TGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS-3UTR CAA 90 bp CAGATGGCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAACAAGCTTGGGGAGGGTaGGTCTGGCTTCTCTGTATC +
Preference number: 5 (lower is better)
Translates to: QMAAKTQLPLCAFALTAEQAWGG*VWLLCI
Trigger: GATACAGAGAAGCCAGACCAACCCTCCCCAAGCTTG...TTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGCCATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS GCA 90 bp GGGACACTTTTGGCTTCCTCTGACTCTCACTCTGGAAGACCTCTGTaGCCTTCTTCATGGCAGAATTCAATCTTCGGTAGGATCTCAGGT +
Preference number: 5 (lower is better)
Translates to: GTLLASSDSHSGRPL*PSSWQNSIFGRISG
Trigger: ACCTGAGATCCTACCGAAGATTGAATTCTGCCATGAAGAAGGGCACAGAGGTCTTCCAGAGTGAGAGTCAGAGGAAGCCAAAAGTGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS CCA 90 bp GCTTCCTCTGACTCTCACTCTGGAAGACCTCTGTGCCCTTCTTCATaGCAGAATTCAATCTTCGGTAGGATCTCAGGTAGTCCACACTCT +
Preference number: 5 (lower is better)
Translates to: ASSDSHSGRPLCPSS*QNSIFGRISGSPHS
Trigger: AGAGTGTGGACTACCTGAGATCCTACCGAAGATTGAATTCTGCCATGAAGAAGGGCACAGAGGTCTTCCAGAGTGAGAGTCAGAGGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS-3UTR CAA 90 bp GCTGCAAAGACACAACTGCCTTTGTGTGCCTTTGCTCTAACAGCAGAAGCTGACATATCTGATGTATCCTaGACAAAACTGGGAATGGAC +
Preference number: 5 (lower is better)
Translates to: AAKTQLPLCAFALTAEADISDVS*TKLGMD
Trigger: GTCCATTCCCAGTTTTGTCAAGGATACATCAGATAT...GTCAGCTTCTGCTGTTAGAGCAAAGGCACACAAAGGCAGTTGTGTCTTTGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190512.2
CDS TCA 90 bp TATAGATCCCATTCGGCAATCCAGCCATCCTCAGAGCAGTGGCTTTaGTCTTTGCCTAAACAAAGTGCCTCAGAATTAGAACACCTTGTA +
Preference number: 5 (lower is better)
Translates to: YRSHSAIQPSSEQWL*SLPKQSASELEHLV
Trigger: TACAAGGTGTTCTAATTCTGAGGCACTTTGTTTAGGCAAAGATCAAAGCCACTGCTCTGAGGATGGCTGGATTGCCGAATGGGATCTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS CCA 72 bp GGTCACAAGATCCAGACCTTTCTCCCTGAGCAAGCTTaGGGAGGGTTGGTCTGGCTTCTCTGTATCTTTGTC +
Preference number: 6 (lower is better)
Translates to: GHKIQTFLPEQA*GGLVWLLCIFV
Trigger: GACAAAGATACAGAGAAGCCAGACCAACCCTCCCCAAGCTTGCTCAGGGAGAAAGGTCTGGATCTTGTGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS GCA 72 bp TTGGCTTCCTCTGACTCTCACTCTGGAAGACCTCTGTaGCCTTCTTCATGGCAGAATTCAATCTTCGGTAGG +
Preference number: 6 (lower is better)
Translates to: LASSDSHSGRPL*PSSWQNSIFGR
Trigger: CCTACCGAAGATTGAATTCTGCCATGAAGAAGGGCACAGAGGTCTTCCAGAGTGAGAGTCAGAGGAAGCCAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS CCA 72 bp GACTCTCACTCTGGAAGACCTCTGTGCCCTTCTTCATaGCAGAATTCAATCTTCGGTAGGATCTCAGGTAGT +
Preference number: 6 (lower is better)
Translates to: DSHSGRPLCPSS*QNSIFGRISGS
Trigger: ACTACCTGAGATCCTACCGAAGATTGAATTCTGCCATGAAGAAGGGCACAGAGGTCTTCCAGAGTGAGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS TCA 72 bp CATTCGGCAATCCAGCCATCCTCAGAGCAGTGGCTTTaGTCTTTGCCTAAACAAAGTGCCTCAGAATTAGAA +
Preference number: 6 (lower is better)
Translates to: HSAIQPSSEQWL*SLPKQSASELE
Trigger: TTCTAATTCTGAGGCACTTTGTTTAGGCAAAGATCAAAGCCACTGCTCTGAGGATGGCTGGATTGCCGAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS CCA 72 bp CTCTGTATCTTTGTCTTTGTAGTTTTCCACATCTCCTaGGGACACTTTTGGCTTCCTCTGACTCTCACTCTG +
Preference number: 6 (lower is better)
Translates to: LCIFVFVVFHIS*GHFWLPLTLTL
Trigger: CAGAGTGAGAGTCAGAGGAAGCCAAAAGTGTCCCCAGGAGATGTGGAAAACTACAAAGACAAAGATACAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2
CDS CAA 72 bp CTGGGCAGTGCATGTTCTTCAATATCTGATGTATCCTaGACAAAACTGGGAATGGACTGCATCATCTTCTTG +
Preference number: 6 (lower is better)
Translates to: LGSACSSISDVS*TKLGMDCIIFL
Trigger: CAAGAAGATGATGCAGTCCATTCCCAGTTTTGTCAAGGATACATCAGATATTGAAGAACATGCACTGCCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178510.2
ENSMUST00000190512.2