Pregenerated sensors for TCP11X2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058252

Ensembl transcript IDs: ENSMUST00000078605.7

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	TGGAATTTGTACGGTTGGCCGCTAACAGTTGCATCCTaGATCTTAATGAGGAAGAGGGTCACCTGCAGTTGT	+
Preference number: 3 (lower is better) Translates to: WNLYGWPLTVAS*ILMRKRVTCSC Trigger: ACAACTGCAGGTGACCCTCTTCCTCATTAAGATTCAGGATGCAACTGTTAGCGGCCAACCGTACAAATTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CCA 90 bp	AATTCTTCATTCCCATGGTCCCTGAGAACAAGATTTAGGTACCCTTaGTATAGCACTGTTGTAAGACTGGGTGGATCTGGGTCAGGCTTT	+
Preference number: 5 (lower is better) Translates to: NSSFPWSLRTRFRYP*YSTVVRLGGSGSGF Trigger: AAAGCCTGACCCAGATCCACCCAGTCTTACAACAGTGCTATACCAAGGGTACCTAAATCTTGTTCTCAGGGACCATGGGAATGAAGAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CCA 90 bp	GAGAAACTTCTTGCCACCAGTAAAACTGAGGCTAGAATAGTCAAGTaGCGAAATTTGGATCTCATAGTCTGCAGTCGTGCTTTATCCATC	+
Preference number: 5 (lower is better) Translates to: EKLLATSKTEARIVK*RNLDLIVCSRALSI Trigger: GATGGATAAAGCACGACTGCAGACTATGAGATCCAAATTTCGCCACTTGACTATTCTAGCCTCAGTTTTACTGGTGGCAAGAAGTTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CCA 72 bp	CTGCAAGCTGGTTCTCTGCAGAGTGGACCTCTGAACTaGTCTTATCTTCCTGGTTCTTGCTTGATGTTTCTG	+
Preference number: 6 (lower is better) Translates to: LQAGSLQSGPLN*SYLPGSCLMFL Trigger: CAGAAACATCAAGCAAGAACCAGGAAGATAAGACCAGTTCAGAGGTCCACTCTGCAGAGAACCAGCTTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS TCA 72 bp	GCAGAATATCCAGAGCCCCGTGCTCTGTTTCTTGTTTaGGGAGATCCAAATCCAGTACCTCTTCAATCTCAT	+
Preference number: 6 (lower is better) Translates to: AEYPEPRALFLV*GDPNPVPLQSH Trigger: ATGAGATTGAAGAGGTACTGGATTTGGATCTCCTCAAACAAGAAACAGAGCACGGGGCTCTGGATATTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS GCA 72 bp	CAAGTGGCGAAATTTGGATCTCATAGTCTGCAGTCGTaGTTTATCCATCAGCAGAGTCTCAGGGAATTCTTC	+
Preference number: 6 (lower is better) Translates to: QVAKFGSHSLQS*FIHQQSLREFF Trigger: GAAGAATTCCCTGAGACTCTGCTGATGGATAAAGCACGACTGCAGACTATGAGATCCAAATTTCGCCACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CCA 72 bp	TCATTAGAAATTGCTGCAAGCTGGTTCTCTGCAGAGTaGACCTCTGAACTGGTCTTATCTTCCTGGTTCTTG	+
Preference number: 6 (lower is better) Translates to: SLEIAASWFSAE*TSELVLSSWFL Trigger: CAAGAACCAGGAAGATAAGACCAGTTCAGAGGTCCACTCTGCAGAGAACCAGCTTGCAGCAATTTCTAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CCA 72 bp	TCCATCAGCAGAGTCTCAGGGAATTCTTCATTCCCATaGTCCCTGAGAACAAGATTTAGGTACCCTTGGTAT	+
Preference number: 6 (lower is better) Translates to: SISRVSGNSSFP*SLRTRFRYPWY Trigger: ATACCAAGGGTACCTAAATCTTGTTCTCAGGGACCATGGGAATGAAGAATTCCCTGAGACTCTGCTGATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CCA 72 bp	ACTTTTCCTGTATCTTCATTAGAAATTGCTGCAAGCTaGTTCTCTGCAGAGTGGACCTCTGAACTGGTCTTA	+
Preference number: 6 (lower is better) Translates to: TFPVSSLEIAAS*FSAEWTSELVL Trigger: TAAGACCAGTTCAGAGGTCCACTCTGCAGAGAACCAGCTTGCAGCAATTTCTAATGAAGATACAGGAAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CAA 72 bp	CGTTGTTCAATGATGATACGAATGCAATTCTCTTTCTaGGCAATGTTCCGCAGTTGTCCTACAAGTGATGCC	+
Preference number: 6 (lower is better) Translates to: RCSMMIRMQFSF*AMFRSCPTSDA Trigger: GGCATCACTTGTAGGACAACTGCGGAACATTGCCAAGAAAGAGAATTGCATTCGTATCATCATTGAACAACG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS TCA 72 bp	CAAACTTCCATCCTAGTTCTGCTAACTCTGGCTCAATaGAAAGAAAGCATCCAGGGAAGTCTAGAAGAGATT	+
Preference number: 6 (lower is better) Translates to: QTSILVLLTLAQ*KESIQGSLEEI Trigger: AATCTCTTCTAGACTTCCCTGGATGCTTTCTTTTCATTGAGCCAGAGTTAGCAGAACTAGGATGGAAGTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CAA 72 bp	AGTAAAACTGAGGCTAGAATAGTCAAGTGGCGAAATTaGGATCTCATAGTCTGCAGTCGTGCTTTATCCATC	+
Preference number: 6 (lower is better) Translates to: SKTEARIVKWRN*DLIVCSRALSI Trigger: GATGGATAAAGCACGACTGCAGACTATGAGATCCAAATTTCGCCACTTGACTATTCTAGCCTCAGTTTTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078605.7
CDS CAA 90 bp	AAATGCATCCGTTGTTCAATGATGATACGAATGCAATTCTCTTTCTaGGCAATGTTCCGCAGTTGTCCTACAAGTGATGCCCTGTTTTCA	+
Preference number: 6 (lower is better) Translates to: KCIRCSMMIRMQFSF*AMFRSCPTSDALFS Trigger: TGAAAACAGGGCATCACTTGTAGGACAACTGCGGAACATTGCCAAGAAAGAGAATTGCATTCGTATCATCATTGAACAACGGATGCATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078605.7

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