RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TCP11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062859

Ensembl transcript IDs: ENSMUST00000042692.13, ENSMUST00000043925.16, ENSMUST00000114836.9, ENSMUST00000129046.9, ENSMUST00000232728.2, ENSMUST00000232798.2, ENSMUST00000233009.2, ENSMUST00000233615.2, ENSMUST00000233665.2, ENSMUST00000233898.2

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGGCGACATCACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCAGAGGGGGCAATGAGCTGTGTGGCC +
Preference number: 1 (lower is better)
Translates to: TATSLGDGPAELEQS*KSEELAEGAMSCVA
Trigger: GGCCACACAGCTCATTGCCCCCTCTGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTCGCCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR GCA 90 bp GCAGAGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATaGGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGT +
Preference number: 1 (lower is better)
Translates to: AEGTLLLSGDVIPGR*AFSWVQGASAPSRC
Trigger: ACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR TCA 90 bp GAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGCTCCTGCAGCCGGGGTCTGTCTGCC +
Preference number: 1 (lower is better)
Translates to: EKLLATSKTEARMVS*LCCDSSSCSRGLSA
Trigger: GGCAGACAGACCCCGGCTGCAGGAGCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR GCA 90 bp TGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTaGTCCGAGCCGATGTCATCAGAGAGACCCACCTTTGGTGGCCAG +
Preference number: 1 (lower is better)
Translates to: CHPREMRFLLGPRCQ*SEPMSSERPTFGGQ
Trigger: CTGGCCACCAAAGGTGGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp CACTGTCAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATaGTTAGCTGACTCTGCTGCGACTCCAGCTCCTGCAGCCGGGGTC +
Preference number: 1 (lower is better)
Translates to: HCQRSYWPPARQRQG*LADSAATPAPAAGV
Trigger: GACCCCGGCTGCAGGAGCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp TTCTCGCTGCTCAGAGCGGCCAACCCCATGCTCTCGAGACCCTGGTaGACTTCCTCCACCACCTGCTCACTCACTGACTGCATCACTTCC +
Preference number: 1 (lower is better)
Translates to: FSLLRAANPMLSRPW*TSSTTCSLTDCITS
Trigger: GGAAGTGATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCATGGGGTTGGCCGCTCTGAGCAGCGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp GTATTCTCGCTGCTCAGAGCGGCCAACCCCATGCTCTCGAGACCCTaGTGGACTTCCTCCACCACCTGCTCACTCACTGACTGCATCACT +
Preference number: 1 (lower is better)
Translates to: VFSLLRAANPMLSRP*WTSSTTCSLTDCIT
Trigger: AGTGATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCATGGGGTTGGCCGCTCTGAGCAGCGAGAATAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp TGGTCAATGACGCTGCGGACGCAGTTTTCCTTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGACGCCGTATTCTCGCTGCTCAGAGCG +
Preference number: 1 (lower is better)
Translates to: WSMTLRTQFSFLAMF*SWPTRDAVFSLLRA
Trigger: CGCTCTGAGCAGCGAGAATACGGCGTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAAGGAAAACTGCGTCCGCAGCGTCATTGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTaGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGAC +
Preference number: 1 (lower is better)
Translates to: LLLSGDVIPGRCAFS*VQGASAPSRCHQRD
Trigger: GTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR TCA 90 bp AACTCTTCATTCTCAGGGTCCCAGGTGAGAAGGTTCAGGAATCCTTaGGACAGCACCATCGCGGGGCTGAGTGGCTCTGGGACGGCGACA +
Preference number: 1 (lower is better)
Translates to: NSSFSGSQVRRFRNP*DSTIAGLSGSGTAT
Trigger: TGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATGGTGCTGTCTCAAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGAATGAAGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR TCA 90 bp CGGTGTAATACGGGGCAAACACCTGCTGGTTGTGATGGGTCAGGCTaGCAAACTTCTGGCCCAGTTCCGCCAGCTCAGCTTCGATCAGAG +
Preference number: 1 (lower is better)
Translates to: RCNTGQTPAGCDGSG*QTSGPVPPAQLRSE
Trigger: CTCTGATCGAAGCTGAGCTGGCGGAACTGGGCCAGAAGTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTTTGCCCCGTATTACACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp TCCTCCACCAGGGACTTCGTGATTTGTTTCAGCTTGTCTACAAACTaGGGTGAGCTAAACAGACCACTGTCAGAGAAGCTACTGGCCACC +
Preference number: 1 (lower is better)
Translates to: SSTRDFVICFSLSTN*GELNRPLSEKLLAT
Trigger: GGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTTAGCTCACCCCAGTTTGTAGACAAGCTGAAACAAATCACGAAGTCCCTGGTGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 90 bp TGCACACCCAGGACAAAGCAGCACTTGAGGAACAAGTGTATACGCTaGTCAATGACGCTGCGGACGCAGTTTTCCTTCTTGGCAATGTTC +
Preference number: 1 (lower is better)
Translates to: CTPRTKQHLRNKCIR*SMTLRTQFSFLAMF
Trigger: GAACATTGCCAAGAAGGAAAACTGCGTCCGCAGCGTCATTGACCAGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR TCA 90 bp CACCAGGGACTTCGTGATTTGTTTCAGCTTGTCTACAAACTGGGGTaGGCTAAACAGACCACTGTCAGAGAAGCTACTGGCCACCAGCAA +
Preference number: 1 (lower is better)
Translates to: HQGLRDLFQLVYKLG*AKQTTVREATGHQQ
Trigger: TTGCTGGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTTAGCTCACCCCAGTTTGTAGACAAGCTGAAACAAATCACGAAGTCCCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR TCA 90 bp ACCTTGCCTTTCAGGCTGCTTGAAGATAAACTCCTTTCTTCCAACTaGCAATCAAGCTTGGAAGCGTCATGGACTCTCTCCGTCATACCT +
Preference number: 1 (lower is better)
Translates to: TLPFRLLEDKLLSSN*QSSLEASWTLSVIP
Trigger: AGGTATGACGGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp GAGATGGGCCGGCCGAGCTGGAGCAGTCCTGCAAGTCAGAGGAACTGGCAGAGGTTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 2 (lower is better)
Translates to: EMGRPSWSSPASQRNWQRFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...CCTCTGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp TGGCCCAGTTCCGCCAGCTCAGCTTCGATCAGAGTGAGGCCCCCGGGAAGGTCCTGGGCATGGTGTCCTTaGCCTTGCCTTTCAGGCTGC +
Preference number: 2 (lower is better)
Translates to: WPSSASSASIRVRPPGRSWAWCP*PCLSGC
Trigger: GCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCA...GGACCTTCCCGGGGGCCTCACTCTGATCGAAGCTGAGCTGGCGGAACTGGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp CTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACCCACCCTCCTGGGTCCAAGGTaGCAGTGCTCCGAGCCGATG +
Preference number: 2 (lower is better)
Translates to: LLGPRCQCSEPMSSERPTLLGPR*QCSEPM
Trigger: CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAG...GGTGGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR GCA 90 bp CAGAGTGAGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAACTCCTGGGTCCAAGGTaGCAGTGCTCCGAGCCGATG +
Preference number: 2 (lower is better)
Translates to: QSEAPGKVQEGSLHTQDKLLGPR*QCSEPM
Trigger: CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAG...TTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCTCACTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CCA 90 bp TTCGATCAGAGTGAGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCACACCCAGATGGGCCGGCCGAGCTaGAGCAGTCCTGCAAGTCAG +
Preference number: 2 (lower is better)
Translates to: FDQSEAPGKVQEGSLHTQMGRPS*SSPASQ
Trigger: CTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCAT...CTGGGTGTGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCTCACTCTGATCGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp GGTGGACTTCCTCCACCACCTGCTCACTCACTGACTGCATCACTTCCTCGGGCCTGGACGGAGTGTTCCTaGAGCTGGGGCTGGAGGCTC +
Preference number: 2 (lower is better)
Translates to: GGLPPPPAHSLTASLPRAWTECS*SWGWRL
Trigger: GAGCCTCCAGCCCCAGCTTCAGGAACACTCCGTCCA...GGCCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGTCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp GCTTCCTCGATCTCATTCTTCAGGCGGCTCTGCCGTGGCAGCAGCAGGGACAACCTCCTGGGTCCAAGGTaGCAGTGCTCCGAGCCGATG +
Preference number: 2 (lower is better)
Translates to: ASSISFFRRLCRGSSRDNLLGPR*QCSEPM
Trigger: CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAG...GTTGTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAATGAGATCGAGGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp CAGAGTGAGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAAGGGCAGAGGGGACCCTaGTGCTCAGTGGTGATGTCA +
Preference number: 2 (lower is better)
Translates to: QSEAPGKVQEGSLHTQDKGQRGP*CSVVMS
Trigger: TGACATCACCACTGAGCAGCAGGGTCCCCTCTGCCC...TTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCTCACTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp GCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACTGGACGGAGTGTTCCTaGAGCTGGGGCTGGAGGCTC +
Preference number: 2 (lower is better)
Translates to: AFSWVQGASAPSRCHQRDWTECS*SWGWRL
Trigger: GAGCCTCCAGCCCCAGCTTCAGGAACACTCCGTCCA...GTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 2 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp CAGAGTGAGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAACACCTGCTCACTCACTaGCTGCATCACTTCCTCGGG +
Preference number: 2 (lower is better)
Translates to: QSEAPGKVQEGSLHTQDKHLLTH*LHHFLG
Trigger: CCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTG...TTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCTCACTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp GCGACATCACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCCTGCAAGTCAGAGACTTCGTGGTGTGGTTaGGGAGTCTGGGCTCTTTGT +
Preference number: 2 (lower is better)
Translates to: ATSLGDGPAELEQSCKSETSWCG*GVWALC
Trigger: ACAAAGAGCCCAGACTCCTCAACCACACCACGAAGT...CTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp CAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATGGTTAGCTGACTCTTGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 2 (lower is better)
Translates to: QRSYWPPARQRQGWLADSWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...AGAGTCAGCTAACCATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp CCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACCCACCTTGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 2 (lower is better)
Translates to: PGSKVPVLRADVIRETHLARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...AAGGTGGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR GCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAACTCCTGGGTCCAAGGTaGCAGTGCTCCGAGCCGATG +
Preference number: 2 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQLLGPR*QCSEPM
Trigger: CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAG...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR GCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGGGCAGAGGGGACCCTaGTGCTCAGTGGTGATGTCA +
Preference number: 2 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRGQRGP*CSVVMS
Trigger: TGACATCACCACTGAGCAGCAGGGTCCCCTCTGCCC...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR GCA 90 bp CCCCTCAGCAGCCGGACCGGATCTGAAATGTTCTCAAGTCTCTGCACAGCCTCGGGGCAGAGGGGACCCTaGTGCTCAGTGGTGATGTCA +
Preference number: 2 (lower is better)
Translates to: PLSSRTGSEMFSSLCTASGQRGP*CSVVMS
Trigger: TGACATCACCACTGAGCAGCAGGGTCCCCTCTGCCC...CGAGGCTGTGCAGAGACTTGAGAACATTTCAGATCCGGTCCGGCTGCTGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp AGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAAGCAGCACACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 2 (lower is better)
Translates to: RPPGRSKRDRCTPRTKQHTSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...GTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CCA 90 bp TCAGAGCGGCCAACCCCATGCTCTCGAGACCCTGGTGGACTTCCTCCACCACCTAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 2 (lower is better)
Translates to: SERPTPCSRDPGGLPPPPSHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...AGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCATGGGGTTGGCCGCTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGACCTGCTGCTCAGTGGTaGTGTCATCCCAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRPAAQW*CHPREM
Trigger: CATCTCCCTGGGATGACATCACCACTGAGCAGCAGG...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR TCA 90 bp AAACAGACCACTGTCAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATTGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 2 (lower is better)
Translates to: KQTTVREATGHQQDRGKDWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...ATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGGCAGAGGGGACCCTaGTGCTCAGTGGTGATGTCA +
Preference number: 2 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQGQRGP*CSVVMS
Trigger: TGACATCACCACTGAGCAGCAGGGTCCCCTCTGCCC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGCCTGCTGCTCAGTGGTaGTGTCATCCCAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKPAAQW*CHPREM
Trigger: CATCTCCCTGGGATGACATCACCACTGAGCAGCAGG...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR TCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAACCTGCTGCTCAGTGGTaGTGTCATCCCAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQPAAQW*CHPREM
Trigger: CATCTCCCTGGGATGACATCACCACTGAGCAGCAGG...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR GCA 90 bp GCAGCCGGGGTCTGTCTGCCACTAGGGTTTCAGGAAACTCTTCATTCTCAGGGTGGGCAGAGGGGACCCTaGTGCTCAGTGGTGATGTCA +
Preference number: 2 (lower is better)
Translates to: AAGVCLPLGFQETLHSQGGQRGP*CSVVMS
Trigger: TGACATCACCACTGAGCAGCAGGGTCCCCTCTGCCC...ACCCTGAGAATGAAGAGTTTCCTGAAACCCTAGTGGCAGACAGACCCCGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CCA 90 bp AAACAGACCACTGTCAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATCATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATC +
Preference number: 2 (lower is better)
Translates to: KQTTVREATGHQQDRGKDHRGAE*LWDGDI
Trigger: GATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATG...ATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR CAA 90 bp GGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAAGCAGCACTaGAGGAACAAGTGTATACGCTGGTCAATGACGCTGCGGACGCAG +
Preference number: 2 (lower is better)
Translates to: GRSKRDRCTPRTKQH*RNKCIRWSMTLRTQ
Trigger: CTGCGTCCGCAGCGTCATTGACCAGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp AGGTCCAAGAGGGATCGCTGCACACCCAGGACAAAGCAGCACTTGAGGAACAAGGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 2 (lower is better)
Translates to: RSKRDRCTPRTKQHLRNKARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...CTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR GCA 90 bp AGGGATCGCTGCACACCCAGGACAAAGCAGCACTTGAGGAACAAGTGTATACGCGGGCAGAGGGGACCCTaGTGCTCAGTGGTGATGTCA +
Preference number: 2 (lower is better)
Translates to: RDRCTPRTKQHLRNKCIRGQRGP*CSVVMS
Trigger: TGACATCACCACTGAGCAGCAGGGTCCCCTCTGCCC...GCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR GCA 90 bp GCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 2 (lower is better)
Translates to: AFSWVQGASAPSRCHQRDTSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...GTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR GCA 90 bp ACTAGGGTTTCAGGAAACTCTTCATTCTCAGGGTCCCAGGTGAGAAGGTTCAGGTTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 2 (lower is better)
Translates to: TRVSGNSSFSGSQVRRFRFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...CCTGAACCTTCTCACCTGGGACCCTGAGAATGAAGAGTTTCCTGAAACCCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR TCA 90 bp GCCACTAGGGTTTCAGGAAACTCTTCATTCTCAGGGTCCCAGGTGAGAAGGTTCCCTGCTGCTCAGTGGTaGTGTCATCCCAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: ATRVSGNSSFSGSQVRRFPAAQW*CHPREM
Trigger: CATCTCCCTGGGATGACATCACCACTGAGCAGCAGG...GAACCTTCTCACCTGGGACCCTGAGAATGAAGAGTTTCCTGAAACCCTAGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp CAGAGTGAGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAAACAACAGGATCTCTTTaGTCTCCTTCAGAAGCTCAA +
Preference number: 2 (lower is better)
Translates to: QSEAPGKVQEGSLHTQDKTTGSL*SPSEAQ
Trigger: TTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGT...TTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCTCACTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CCA 90 bp CAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATGGTTAGCTGACTCTATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: QRSYWPPARQRQGWLADSICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...AGAGTCAGCTAACCATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CCA 90 bp TGTCATCAGAGAGACCCACCTTTGGTGGCCAGGGTCTGGGCTGGGGAGATGAGGTTCACAAGTTTATTATaGAGCGGGTTTGGGCCAGTT +
Preference number: 2 (lower is better)
Translates to: CHQRDPPLVARVWAGEMRFTSLL*SGFGPV
Trigger: AACTGGCCCAAACCCGCTCCATAATAAACTTGTGAA...CCTCATCTCCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTGATGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CAA 90 bp ACCACCTGCTCACTCACTGACTGCATCACTTCCTCGGGCCTGGAGTaGAAATCCTCCACCAGGGACTTCGTGATTTGTTTCAGCTTGTCT +
Preference number: 2 (lower is better)
Translates to: TTCSLTDCITSSGLE*KSSTRDFVICFSLS
Trigger: AGACAAGCTGAAACAAATCACGAAGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGTTTGGGCCAGTTGTTaGCATGTTTGTCTTGTTACA +
Preference number: 2 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRVWASC*HVCLVT
Trigger: TGTAACAAGACAAACATGTCAACAACTGGCCCAAAC...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR TCA 90 bp TCCTCCACCACCTGCTCACTCACTGACTGCATCACTTCCTCGGGCCTGGAGTTGGTTTGGGCCAGTTGTTaGCATGTTTGTCTTGTTACA +
Preference number: 2 (lower is better)
Translates to: SSTTCSLTDCITSSGLELVWASC*HVCLVT
Trigger: TGTAACAAGACAAACATGTCAACAACTGGCCCAAAC...CAACTCCAGGCCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp TTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACCCAACAACAGGATCTCTTTaGTCTCCTTCAGAAGCTCAA +
Preference number: 2 (lower is better)
Translates to: FSWVQGASAPSRCHQRDPTTGSL*SPSEAQ
Trigger: TTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGT...TGGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGATTCACAAGTTTATTATaGAGCGGGTTTGGGCCAGTT +
Preference number: 2 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRFTSLL*SGFGPV
Trigger: AACTGGCCCAAACCCGCTCCATAATAAACTTGTGAA...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR TCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTTTGGGCCAGTTGTTaGCATGTTTGTCTTGTTACA +
Preference number: 2 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQVWASC*HVCLVT
Trigger: TGTAACAAGACAAACATGTCAACAACTGGCCCAAAC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTTCACAAGTTTATTATaGAGCGGGTTTGGGCCAGTT +
Preference number: 2 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKFTSLL*SGFGPV
Trigger: AACTGGCCCAAACCCGCTCCATAATAAACTTGTGAA...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAATTCACAAGTTTATTATaGAGCGGGTTTGGGCCAGTT +
Preference number: 2 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQFTSLL*SGFGPV
Trigger: AACTGGCCCAAACCCGCTCCATAATAAACTTGTGAA...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR GCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTACTCCTGGGTCCAAGGTaGCAGTGCTCCGAGCCGATG +
Preference number: 2 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLLLGPR*QCSEPM
Trigger: CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAG...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CCA 90 bp GTCCAAGAGGGATCGCTGCACACCCAGGACAAAGCAGCACTTGAGGAACAAGTGTTCACAAGTTTATTATaGAGCGGGTTTGGGCCAGTT +
Preference number: 2 (lower is better)
Translates to: VQEGSLHTQDKAALEEQVFTSLL*SGFGPV
Trigger: AACTGGCCCAAACCCGCTCCATAATAAACTTGTGAA...CACTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCTCTTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTACCTGCTGCTCAGTGGTaGTGTCATCCCAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLPAAQW*CHPREM
Trigger: CATCTCCCTGGGATGACATCACCACTGAGCAGCAGG...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CAA 90 bp TGGCTCTGGGACGGCGACATCACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCCTGGGCATGGTGTCCTaGACCTTGCCTTTCAGGCTG +
Preference number: 3 (lower is better)
Translates to: WLWDGDITGRWAGRAGAVLGMVS*TLPFRL
Trigger: CAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCAG...GACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTCGCCGTCCCAGAGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR TCA 72 bp TCTGGCCCAGTTCCGCCAGCTCAGCTTCGATCAGAGTaGGGCCCCCGGGAAGGTCCAAGAGGGATCGCTGCA +
Preference number: 3 (lower is better)
Translates to: SGPVPPAQLRSE*GPREGPRGIAA
Trigger: TGCAGCGATCCCTCTTGGACCTTCCCGGGGGCCTCACTCTGATCGAAGCTGAGCTGGCGGAACTGGGCCAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 72 bp CAGGAATCCTTGAGACAGCACCATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATCACTGGGAGATGGGCC +
Preference number: 3 (lower is better)
Translates to: QESLRQHHRGAE*LWDGDITGRWA
Trigger: GGCCCATCTCCCAGTGATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATGGTGCTGTCTCAAGGATTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR GCA 72 bp ACGCCGTATTCTCGCTGCTCAGAGCGGCCAACCCCATaGTCTCGAGACCCTGGTGGACTTCCTCCACCACCT +
Preference number: 3 (lower is better)
Translates to: TPYSRCSERPTP*SRDPGGLPPPP
Trigger: AGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCATGGGGTTGGCCGCTCTGAGCAGCGAGAATACGGCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 72 bp GAACTGGCAGAGGGGGCAATGAGCTGTGTGGCCGCCTaGGTGAGCCACTTCGTGGTGTGGTTGAGGAGTCTG +
Preference number: 3 (lower is better)
Translates to: ELAEGAMSCVAA*VSHFVVWLRSL
Trigger: CAGACTCCTCAACCACACCACGAAGTGGCTCACCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCAGTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR CCA 72 bp CTCAGAGCGGCCAACCCCATGCTCTCGAGACCCTGGTaGACTTCCTCCACCACCTGCTCACTCACTGACTGC +
Preference number: 3 (lower is better)
Translates to: LRAANPMLSRPW*TSSTTCSLTDC
Trigger: GCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCATGGGGTTGGCCGCTCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp GCGACATCACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCCTGCAAGTCAGAGCACTTCGTGGTGTGGTaGAGGAGTCTGGGCTCTTTG +
Preference number: 3 (lower is better)
Translates to: ATSLGDGPAELEQSCKSEHFVVW*RSLGSL
Trigger: CAAAGAGCCCAGACTCCTCAACCACACCACGAAGTG...CTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR GCA 72 bp ACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATaGGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCG +
Preference number: 3 (lower is better)
Translates to: TLLLSGDVIPGR*AFSWVQGASAP
Trigger: CGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR GCA 72 bp CATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTaGCAGTGCTCCGAGCCGATGTCATCAGAGAGACCC +
Preference number: 3 (lower is better)
Translates to: HPREMRFLLGPR*QCSEPMSSERP
Trigger: GGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGACACTTCGTGGTGTGGTaGAGGAGTCTGGGCTCTTTG +
Preference number: 3 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRHFVVW*RSLGSL
Trigger: CAAAGAGCCCAGACTCCTCAACCACACCACGAAGTG...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR GCA 72 bp ATGCTCTCGAGACCCTGGTGGACTTCCTCCACCACCTaGTCACTCACTGACTGCATCACTTCCTCGGGCCTG +
Preference number: 3 (lower is better)
Translates to: MLSRPWWTSSTT*SLTDCITSSGL
Trigger: CAGGCCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 72 bp ACGCTGCGGACGCAGTTTTCCTTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGACGCCGTATTCTCGCTG +
Preference number: 3 (lower is better)
Translates to: TLRTQFSFLAMF*SWPTRDAVFSL
Trigger: CAGCGAGAATACGGCGTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAAGGAAAACTGCGTCCGCAGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAATGGTGTCCTTGACCTaGCCTTTCAGGCTGCTTGAA +
Preference number: 3 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRMVSLT*PFRLLE
Trigger: TTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCAT...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR TCA 72 bp ACGGGGCAAACACCTGCTGGTTGTGATGGGTCAGGCTaGCAAACTTCTGGCCCAGTTCCGCCAGCTCAGCTT +
Preference number: 3 (lower is better)
Translates to: TGQTPAGCDGSG*QTSGPVPPAQL
Trigger: AAGCTGAGCTGGCGGAACTGGGCCAGAAGTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTTTGCCCCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR GCA 72 bp AGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTaGTCCGAGCCGATGTCATCAGAGAGACCCACCTTT +
Preference number: 3 (lower is better)
Translates to: REMRFLLGPRCQ*SEPMSSERPTF
Trigger: AAAGGTGGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 72 bp AGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTaGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCAT +
Preference number: 3 (lower is better)
Translates to: SGDVIPGRCAFS*VQGASAPSRCH
Trigger: ATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp GCGACATCACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCCTGCAAGTCAGAGGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 3 (lower is better)
Translates to: ATSLGDGPAELEQSCKSEDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...CTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR CCA 72 bp TGTCATCAGAGAGACCCACCTTTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTTTTTAAGATCTCGGTG +
Preference number: 3 (lower is better)
Translates to: CHQRDPPLVARV*AGEMRVFKISV
Trigger: CACCGAGATCTTAAAAACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTGATGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp TTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACCCGTTGACATGTTTGTCTaGTTACAGCCCTGGTGTGCT +
Preference number: 3 (lower is better)
Translates to: FLLGPRCQCSEPMSSERPVDMFV*LQPWCA
Trigger: AGCACACCAGGGCTGTAACAAGACAAACATGTCAAC...GGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp GCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACGTTGACATGTTTGTCTaGTTACAGCCCTGGTGTGCT +
Preference number: 3 (lower is better)
Translates to: AFSWVQGASAPSRCHQRDVDMFV*LQPWCA
Trigger: AGCACACCAGGGCTGTAACAAGACAAACATGTCAAC...GTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp ATGTCATCAGAGAGACCCACCTTTGGTGGCCAGGGTCTGGGCTGGGGAGATGAGGTTGACATGTTTGTCTaGTTACAGCCCTGGTGTGCT +
Preference number: 3 (lower is better)
Translates to: MSSERPTFGGQGLGWGDEVDMFV*LQPWCA
Trigger: AGCACACCAGGGCTGTAACAAGACAAACATGTCAAC...CTCATCTCCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTGATGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTAC +
Preference number: 3 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSGLGQL*TCLSCY
Trigger: GTAACAAGACAAACATGTCAACAACTGGCCCAAACC...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CAA 90 bp ACATCACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCCTGCAAGTCAGAGGAAGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 3 (lower is better)
Translates to: TSLGDGPAELEQSCKSEEDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...TTCCTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CAA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCGTGATTTGTTTCAGCTaGTCTACAAACTGGGGTGAG +
Preference number: 3 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSVICFS*STNWGE
Trigger: CTCACCCCAGTTTGTAGACAAGCTGAAACAAATCAC...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTTGACATGTTTGTCTaGTTACAGCCCTGGTGTGCT +
Preference number: 3 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQVDMFV*LQPWCA
Trigger: AGCACACCAGGGCTGTAACAAGACAAACATGTCAAC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CAA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTAC +
Preference number: 3 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKGLGQL*TCLSCY
Trigger: GTAACAAGACAAACATGTCAACAACTGGCCCAAACC...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CAA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTAC +
Preference number: 3 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQGLGQL*TCLSCY
Trigger: GTAACAAGACAAACATGTCAACAACTGGCCCAAACC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CAA 90 bp GGAAGGTCCAAGAGGGATCGCTGCACACCCAGGACAAAGCAGCACTTGAGGAACGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTAC +
Preference number: 3 (lower is better)
Translates to: GRSKRDRCTPRTKQHLRNGLGQL*TCLSCY
Trigger: GTAACAAGACAAACATGTCAACAACTGGCCCAAACC...GTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp TTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCAGAGAGACCCAAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 3 (lower is better)
Translates to: FSWVQGASAPSRCHQRDPNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...TGGGTCTCTCTGATGACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CAA 90 bp TCCAGCTCCTGCAGCCGGGGTCTGTCTGCCACTAGGGTTTCAGGAAACTCTTCATGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 3 (lower is better)
Translates to: SSSCSRGLSATRVSGNSSCLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...TGAAGAGTTTCCTGAAACCCTAGTGGCAGACAGACCCCGGCTGCAGGAGCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CAA 90 bp AAACAGACCACTGTCAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGATGTTGACATGTTTGTCTaGTTACAGCCCTGGTGTGCT +
Preference number: 3 (lower is better)
Translates to: KQTTVREATGHQQDRGKDVDMFV*LQPWCA
Trigger: AGCACACCAGGGCTGTAACAAGACAAACATGTCAAC...ATCCTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp GCTAAACAGACCACTGTCAGAGAAGCTACTGGCCACCAGCAAGACAGAGGCAAGGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTAC +
Preference number: 3 (lower is better)
Translates to: AKQTTVREATGHQQDRGKGLGQL*TCLSCY
Trigger: GTAACAAGACAAACATGTCAACAACTGGCCCAAACC...CTTGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR-3UTR CAA 90 bp TGCAGCCGGGGTCTGTCTGCCACTAGGGTTTCAGGAAACTCTTCATTCTCAGGGAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 3 (lower is better)
Translates to: CSRGLSATRVSGNSSFSGNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...CCCTGAGAATGAAGAGTTTCCTGAAACCCTAGTGGCAGACAGACCCCGGCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR-3UTR CAA 90 bp TCGCTGCACACCCAGGACAAAGCAGCACTTGAGGAACAAGTGTATACGCTGGTCTGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 3 (lower is better)
Translates to: SLHTQDKAALEEQVYTLVCLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...GACCAGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR TCA 72 bp CACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTaGCATGTTTGTCTTGTTACAGCCCTGGTGTGCTGG +
Preference number: 3 (lower is better)
Translates to: HKFIMERVWASC*HVCLVTALVCW
Trigger: CCAGCACACCAGGGCTGTAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
3UTR-3UTR CAA 90 bp ACTAGGGTTTCAGGAAACTCTTCATTCTCAGGGTCCCAGGTGAGAAGGTTCAGGGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTAC +
Preference number: 3 (lower is better)
Translates to: TRVSGNSSFSGSQVRRFRGLGQL*TCLSCY
Trigger: GTAACAAGACAAACATGTCAACAACTGGCCCAAACC...CCTGAACCTTCTCACCTGGGACCCTGAGAATGAAGAGTTTCCTGAAACCCTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
3UTR CCA 72 bp AATGTTCTCAAGTCTCTGCACAGCCTCGTCTCGGATTaGCGCACACAACAAGACCATCATGTTGAGGATATA +
Preference number: 3 (lower is better)
Translates to: NVLKSLHSLVSD*RTQQDHHVEDI
Trigger: TATATCCTCAACATGATGGTCTTGTTGTGTGCGCCAATCCGAGACGAGGCTGTGCAGAGACTTGAGAACATT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
3UTR TCA 72 bp TTCAGGCTGCTTGAAGATAAACTCCTTTCTTCCAACTaGCAATCAAGCTTGGAAGCGTCATGGACTCTCTCC +
Preference number: 3 (lower is better)
Translates to: FRLLEDKLLSSN*QSSLEASWTLS
Trigger: GGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTATCTTCAAGCAGCCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233615.2
CDS-3UTR TCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCTGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCTGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGCATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATC +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMHRGAE*LWDGDI
Trigger: GATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATG...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGATGGGCCGGCCGAGCTaGAGCAGTCCTGCAAGTCAG +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMMGRPS*SSPASQ
Trigger: CTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCAT...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGGACATCACTGGGAGATaGGCCGGCCGAGCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMDITGR*AGRAGA
Trigger: TGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTC...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCCATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATC +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAHRGAE*LWDGDI
Trigger: GATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATG...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATC +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSHRGAE*LWDGDI
Trigger: GATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATG...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAGACCCACCTTTGGTaGCCAGGGTCTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAETHLW*PGSGLG
Trigger: CCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTC...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCGAGACCCACCTTTGGTaGCCAGGGTCTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVETHLW*PGSGLG
Trigger: CCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTC...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGGACGGAGTGTTCCTaGAGCTGGGGCTGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRWTECS*SWGWRL
Trigger: GAGCCTCCAGCCCCAGCTTCAGGAACACTCCGTCCA...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTTGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGCCTCGGGCCTGGAGTTaGAATCCTCCACCAGGGACT +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMPRAWS*NPPPGT
Trigger: AGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGG...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCTTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCTTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATGGGCCGGCCGAGCTaGAGCAGTCCTGCAAGTCAG +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVMGRPS*SSPASQ
Trigger: CTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCAT...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCATGGGCCGGCCGAGCTaGAGCAGTCCTGCAAGTCAG +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAMGRPS*SSPASQ
Trigger: CTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCAT...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCGACATCACTGGGAGATaGGCCGGCCGAGCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVDITGR*AGRAGA
Trigger: TGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTC...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTT +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMLVARV*AGEMRV
Trigger: AACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAA...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGACCTCGGGCCTGGAGTTaGAATCCTCCACCAGGGACT +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRPRAWS*NPPPGT
Trigger: AGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGG...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGCACCTGCTCACTCACTaGCTGCATCACTTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMHLLTH*LHHFLG
Trigger: CCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTG...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCATGGGCCGGCCGAGCTaGAGCAGTCCTGCAAGTCAG +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSMGRPS*SSPASQ
Trigger: CTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCAT...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCGACATCACTGGGAGATaGGCCGGCCGAGCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSDITGR*AGRAGA
Trigger: TGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTC...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGACATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATC +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRHRGAE*LWDGDI
Trigger: GATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATG...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTCATCGCGGGGCTGAGTaGCTCTGGGACGGCGACATC +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPHRGAE*LWDGDI
Trigger: GATGTCGCCGTCCCAGAGCCACTCAGCCCCGCGATG...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCTTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTT +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRALVARV*AGEMRV
Trigger: AACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAA...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTT +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRLVARV*AGEMRV
Trigger: AACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAA...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCTTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTT +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSLVARV*AGEMRV
Trigger: AACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAA...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGAGACCCACCTTTGGTaGCCAGGGTCTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPETHLW*PGSGLG
Trigger: CCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTC...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGAGACCCACCTTTGGTaGCCAGGGTCTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRETHLW*PGSGLG
Trigger: CCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTC...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCTGGGCATGGTGTCCTTaGCCTTGCCTTTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSWAWCP*PCLSGC
Trigger: GCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCA...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTTGGACGGAGTGTTCCTaGAGCTGGGGCTGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPWTECS*SWGWRL
Trigger: GAGCCTCCAGCCCCAGCTTCAGGAACACTCCGTCCA...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCCCTCGGGCCTGGAGTTaGAATCCTCCACCAGGGACT +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSPRAWS*NPPPGT
Trigger: AGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGG...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGACACCTGCTCACTCACTaGCTGCATCACTTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRHLLTH*LHHFLG
Trigger: CCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTG...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCACCTGCTCACTCACTaGCTGCATCACTTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSHLLTH*LHHFLG
Trigger: CCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTG...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCA +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMELEQS*KSEELA
Trigger: TGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTC...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGACATCACTGGGAGATaGGCCGGCCGAGCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPDITGR*AGRAGA
Trigger: TGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTC...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMFLAMF*SWPTRD
Trigger: GTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAA...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGAGGCTGACAAACTTCTaGCCCAGTTCCGCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMRLTNF*PSSASS
Trigger: TGAGCTGGCGGAACTGGGCCAGAAGTTTGTCAGCCT...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCTTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTT +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSLVARV*AGEMRV
Trigger: AACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAA...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGAGACCCACCTTTGGTaGCCAGGGTCTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKETHLW*PGSGLG
Trigger: CCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTC...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGAGACCCACCTTTGGTaGCCAGGGTCTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQETHLW*PGSGLG
Trigger: CCCCAGCCCAGACCCTGGCCACCAAAGGTGGGTCTC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGATGCAGTCCCCGCACTTaGGGGACCCTGCCTCAAGCA +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRCSPRT*GTLPQA
Trigger: TGCTTGAGGCAGGGTCCCCCAAGTGCGGGGACTGCA...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233615.2
CDS-3UTR TCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCTGGGCATGGTGTCCTTaGCCTTGCCTTTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSWAWCP*PCLSGC
Trigger: GCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCA...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAATGGACGGAGTGTTCCTaGAGCTGGGGCTGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQWTECS*SWGWRL
Trigger: GAGCCTCCAGCCCCAGCTTCAGGAACACTCCGTCCA...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGACTTCGTGGTGTGGTTaGGGAGTCTGGGCTCTTTGT +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMTSWCG*GVWALC
Trigger: ACAAAGAGCCCAGACTCCTCAACCACACCACGAAGT...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCTCAGGGTCCCAGGTaGGAAGGTTCAGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMSQGPR*EGSGIL
Trigger: AAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGA...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGAACACCTGCTGGTTGTaGTGGGTCAGGCTGACAAAC +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMNTCWL*WVRLTN
Trigger: GTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTT...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAATTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTTCTTCAGGCGGCTCTaGCGTGGCAGCAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKFFRRL*RGSSRD
Trigger: GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAA...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCA +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRELEQS*KSEELA
Trigger: TGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTC...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRASHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGATGGGCCGGCCGAGCTaGAGCAGTCCTGCAAGTCAG +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKMGRPS*SSPASQ
Trigger: CTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCAT...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGACATCACTGGGAGATaGGCCGGCCGAGCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQDITGR*AGRAGA
Trigger: TGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTGTCAGAGAAGCTACTaGCCACCAGCAAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMCQRSY*PPARQR
Trigger: CCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACA...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCTTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSFLAMF*SWPTRD
Trigger: GTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAA...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAAGGCTGACAAACTTCTaGCCCAGTTCCGCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRRLTNF*PSSASS
Trigger: TGAGCTGGCGGAACTGGGCCAGAAGTTTGTCAGCCT...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGATGGGCATGGTGTCCTTaGCCTTGCCTTTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRWAWCP*PCLSGC
Trigger: GCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCA...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTTGGGCATGGTGTCCTTaGCCTTGCCTTTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPWAWCP*PCLSGC
Trigger: GCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCA...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCACTTCGTGGTGTGGTTaGGGAGTCTGGGCTCTTTGT +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSTSWCG*GVWALC
Trigger: ACAAAGAGCCCAGACTCCTCAACCACACCACGAAGT...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCTCTCAGGGTCCCAGGTaGGAAGGTTCAGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVSQGPR*EGSGIL
Trigger: AAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGA...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCTCTCAGGGTCCCAGGTaGGAAGGTTCAGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRASQGPR*EGSGIL
Trigger: AAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGA...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCTCTCAGGGTCCCAGGTaGGAAGGTTCAGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSSQGPR*EGSGIL
Trigger: AAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGA...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTCACCTGCTCACTCACTaGCTGCATCACTTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPHLLTH*LHHFLG
Trigger: CCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTG...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCAACACCTGCTGGTTGTaGTGGGTCAGGCTGACAAAC +
Preference number: 4 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSNTCWL*WVRLTN
Trigger: GTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTT...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGAAACACCTGCTGGTTGTaGTGGGTCAGGCTGACAAAC +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRNTCWL*WVRLTN
Trigger: GTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTT...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCAACACCTGCTGGTTGTaGTGGGTCAGGCTGACAAAC +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVNTCWL*WVRLTN
Trigger: GTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTT...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGATTGTGCGGGAGCATTTaGAACGAGGGGGAGGGAGGT +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRLCGSI*NEGEGG
Trigger: ACCTCCCTCCCCCTCGTTTCAAATGCTCCCGCACAA...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233615.2
CDS-3UTR GCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCA +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSELEQS*KSEELA
Trigger: TGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTC...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRATSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSSHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCAGAGAAGCTACTaGCCACCAGCAAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRCQRSY*PPARQR
Trigger: CCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACA...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCTGTCAGAGAAGCTACTaGCCACCAGCAAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVCQRSY*PPARQR
Trigger: CCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACA...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAATTGGTGGCCAGGGTCTaGGCTGGGGAGATGAGGGTT +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQLVARV*AGEMRV
Trigger: AACCCTCATCTCCCCAGCCCAGACCCTGGCCACCAA...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTGGGCATGGTGTCCTTaGCCTTGCCTTTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKWAWCP*PCLSGC
Trigger: GCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCA...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGCAAGGATGGTTAGCTaGCTCTGCTGCGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKARMVS*LCCDSS
Trigger: GCTGGAGTCGCAGCAGAGTCAGCTAACCATCCTTGC...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCA +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPELEQS*KSEELA
Trigger: TGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTC...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 4 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSTSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRSHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGATTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRFLAMF*SWPTRD
Trigger: GTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAA...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTTTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPFLAMF*SWPTRD
Trigger: GTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAA...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAAGGCTGACAAACTTCTaGCCCAGTTCCGCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRRLTNF*PSSASS
Trigger: TGAGCTGGCGGAACTGGGCCAGAAGTTTGTCAGCCT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp GATCTCGGTGTAATACGGGGCAAACACCTGCTGGTTGTGATGGGTCAGGCTGACGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: DLGVIRGKHLLVVMGQADVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...GTCAGCCTGACCCATCACAACCAGCAGGTGTTTGCCCCGTATTACACCGAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233665.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTACTTCGTGGTGTGGTTaGGGAGTCTGGGCTCTTTGT +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPTSWCG*GVWALC
Trigger: ACAAAGAGCCCAGACTCCTCAACCACACCACGAAGT...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAACTTCGTGGTGTGGTTaGGGAGTCTGGGCTCTTTGT +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRTSWCG*GVWALC
Trigger: ACAAAGAGCCCAGACTCCTCAACCACACCACGAAGT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCGGACAAAGCAGCACTTaGGGAACAAGTGTATACGCT +
Preference number: 4 (lower is better)
Translates to: QGDALSPGSKVPVLRADVGQSST*GTSVYA
Trigger: AGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCC...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAAACACCTGCTGGTTGTaGTGGGTCAGGCTGACAAAC +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRNTCWL*WVRLTN
Trigger: GTTTGTCAGCCTGACCCATCACAACCAGCAGGTGTT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCA +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKELEQS*KSEELA
Trigger: TGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTC...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPTSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQSHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKSHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGATGTCAGAGAAGCTACTaGCCACCAGCAAGACAGAGG +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRCQRSY*PPARQR
Trigger: CCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACA...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAATTCTTGGCAATGTTCTaGAGCTGGCCCACCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQFLAMF*SWPTRD
Trigger: GTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAA...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGACTTCGTGGTGTGGTTaGGGAGTCTGGGCTCTTTGT +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKTSWCG*GVWALC
Trigger: ACAAAGAGCCCAGACTCCTCAACCACACCACGAAGT...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGTCTCAGGGTCCCAGGTaGGAAGGTTCAGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKSQGPR*EGSGIL
Trigger: AAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGA...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQTSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCACAACAGGATCTCTTTaGTCTCCTTCAGAAGCTCAA +
Preference number: 4 (lower is better)
Translates to: SSQGDALSPGSKVPVLRATTGSL*SPSEAQ
Trigger: TTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGT...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGACAAAGCAGCACTTaGGGAACAAGTGTATACGCT +
Preference number: 4 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPGQSST*GTSVYA
Trigger: AGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCC...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGGACAAAGCAGCACTTaGGGAACAAGTGTATACGCT +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRGQSST*GTSVYA
Trigger: AGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCC...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
3UTR CAA 72 bp CTCTGCCGTGGCAGCAGCAGGGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCAAGAGCACAGCTGAAG +
Preference number: 4 (lower is better)
Translates to: LCRGSSRDNRIS*ISFRSSRAQLK
Trigger: CTTCAGCTGTGCTCTTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTCCCTGCTGCTGCCACGGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000233009.2
ENSMUST00000233615.2
CDS-3UTR TCA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAACAACAGGATCTCTTTaGTCTCCTTCAGAAGCTCAA +
Preference number: 4 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRTTGSL*SPSEAQ
Trigger: TTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTATGGCAGAGGGGGCAATaGGCTGTGTGGCCGCCTGGG +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLWQRGQ*AVWPPG
Trigger: CCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCA...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAACAACAGGATCTCTTTaGTCTCCTTCAGAAGCTCAA +
Preference number: 4 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQTTGSL*SPSEAQ
Trigger: TTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGT...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
3UTR CAA 72 bp TCACTCACTGACTGCATCACTTCCTCGGGCCTGGAGTaGAAATCCTCCACCAGGGACTTCGTGATTTGTTTC +
Preference number: 4 (lower is better)
Translates to: SLTDCITSSGLE*KSSTRDFVICF
Trigger: GAAACAAATCACGAAGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGGAAGTGATGCAGTCAGTGAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232728.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTATGGACGGAGTGTTCCTaGAGCTGGGGCTGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLWTECS*SWGWRL
Trigger: GAGCCTCCAGCCCCAGCTTCAGGAACACTCCGTCCA...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTACCTCGGGCCTGGAGTTaGAATCCTCCACCAGGGACT +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLPRAWS*NPPPGT
Trigger: AGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGG...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp GATCTCGGTGTAATACGGGGCAAACACCTGCTGGTTGTGATGGGTCAGGCTGACAGGGACAACAGGATCTaGTTGAAGATAAACTCCTTT +
Preference number: 4 (lower is better)
Translates to: DLGVIRGKHLLVVMGQADRDNRI*LKINSF
Trigger: AAAGGAGTTTATCTTCAAGCAGATCCTGTTGTCCCT...GTCAGCCTGACCCATCACAACCAGCAGGTGTTTGCCCCGTATTACACCGAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232728.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLVWALC*GAPGTE
Trigger: CTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGAC...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTACACCTGCTCACTCACTaGCTGCATCACTTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLHLLTH*LHHFLG
Trigger: CCCGAGGAAGTGATGCAGTCAGTGAGTGAGCAGGTG...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAGAGCTGGAGCAGTCCTaGAAGTCAGAGGAACTGGCA +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLELEQS*KSEELA
Trigger: TGCCAGTTCCTCTGACTTGCAGGACTGCTCCAGCTC...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAATCTGTCCCAAGACCTaGAAGATCCCCCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLICPKT*KIPLSS
Trigger: GCTGCTGAGGGGGATCTTCCAGGTCTTGGGACAGAT...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAAGCCACTTCGTGGTGTaGTTGAGGAGTCTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLSHFVV*LRSLGS
Trigger: AGAGCCCAGACTCCTCAACCACACCACGAAGTGGCT...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
3UTR CAA 72 bp TCACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTaGACATGTTTGTCTTGTTACAGCCCTGGTGTGCTG +
Preference number: 4 (lower is better)
Translates to: SQVYYGAGLGQL*TCLSCYSPGVL
Trigger: CAGCACACCAGGGCTGTAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232728.2
ENSMUST00000232798.2
ENSMUST00000233009.2
ENSMUST00000233615.2
ENSMUST00000233665.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTATCTCAGGGTCCCAGGTaGGAAGGTTCAGGAATCCTT +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLSQGPR*EGSGIL
Trigger: AAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGA...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR GCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAACTTCCTCCACCACCTaGTCACTCACTGACTGCATC +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLTSSTT*SLTDCI
Trigger: GATGCAGTCAGTGAGTGAGCAGGTGGTGGAGGAAGT...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR TCA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAGGACAAAGCAGCACTTaGGGAACAAGTGTATACGCT +
Preference number: 4 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLGQSST*GTSVYA
Trigger: AGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCC...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS GCA 90 bp TCAAGCTTGGAAGCGTCATGGACTCTCTCCGTCATACCTAGCCTGTaGGAGCTCGGGGTCCCGCCGAGGTGGCCCTTTCCCGGGGATGGC +
Preference number: 5 (lower is better)
Translates to: SSLEASWTLSVIPSL*ELGVPPRWPFPGDG
Trigger: GCCATCCCCGGGAAAGGGCCACCTCGGCGGGACCCCGAGCTCGCACAGGCTAGGTATGACGGAGAGAGTCCATGACGCTTCCAAGCTTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042692.13
ENSMUST00000129046.9
CDS-3UTR CAA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGCAGAGAGACCCACCTTaGGTGGCCAGGGTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMQRDPP*VARVWA
Trigger: AGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTG...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGACAGAGAGACCCACCTTaGGTGGCCAGGGTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRQRDPP*VARVWA
Trigger: AGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTG...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCCAGAGAGACCCACCTTaGGTGGCCAGGGTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAQRDPP*VARVWA
Trigger: AGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTG...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS TCA 90 bp ACTGGGAGATGGGCCGGCCGAGCTGGAGCAGTCTGGGCTCTTTGTTaGGGCGCTCCTGGAACTGAGCCCGCTCAAACTGGACGGAGTGTT +
Preference number: 5 (lower is better)
Translates to: TGRWAGRAGAVWALC*GAPGTEPAQTGRSV
Trigger: AACACTCCGTCCAGTTTGAGCGGGCTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCAGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233665.2
CDS-3UTR CAA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCCAGAGAGACCCACCTTaGGTGGCCAGGGTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSQRDPP*VARVWA
Trigger: AGCCCAGACCCTGGCCACCAAAGGTGGGTCTCTCTG...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGACTGGGCATGGTGTCCTaGACCTTGCCTTTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRLGMVS*TLPFRL
Trigger: CAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCAG...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGCACTTCGTGGTGTGGTaGAGGAGTCTGGGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMHFVVW*RSLGSL
Trigger: CAAAGAGCCCAGACTCCTCAACCACACCACGAAGTG...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCAAGGTTCAGGAATCCTaGAGACAGCACCATCGCGGG +
Preference number: 5 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSKVQES*RQHHRG
Trigger: CCCGCGATGGTGCTGTCTCAAGGATTCCTGAACCTT...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCCACTTCGTGGTGTGGTaGAGGAGTCTGGGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSHFVVW*RSLGSL
Trigger: CAAAGAGCCCAGACTCCTCAACCACACCACGAAGTG...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAACTGGGCATGGTGTCCTaGACCTTGCCTTTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQLGMVS*TLPFRL
Trigger: CAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCAG...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGCTGGGCATGGTGTCCTaGACCTTGCCTTTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKLGMVS*TLPFRL
Trigger: CAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCAG...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTCACTTCGTGGTGTGGTaGAGGAGTCTGGGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPHFVVW*RSLGSL
Trigger: CAAAGAGCCCAGACTCCTCAACCACACCACGAAGTG...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTAAGGTTCAGGAATCCTaGAGACAGCACCATCGCGGG +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPKVQES*RQHHRG
Trigger: CCCGCGATGGTGCTGTCTCAAGGATTCCTGAACCTT...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAAAGGTTCAGGAATCCTaGAGACAGCACCATCGCGGG +
Preference number: 5 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRKVQES*RQHHRG
Trigger: CCCGCGATGGTGCTGTCTCAAGGATTCCTGAACCTT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCATGGTGTCCTTGACCTaGCCTTTCAGGCTGCTTGAA +
Preference number: 5 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSMVSLT*PFRLLE
Trigger: TTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCAT...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGGTGATTTGTTTCAGCTaGTCTACAAACTGGGGTGAG +
Preference number: 5 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMVICFS*STNWGE
Trigger: CTCACCCCAGTTTGTAGACAAGCTGAAACAAATCAC...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCAGGACAAAGCAGCACTaGAGGAACAAGTGTATACGC +
Preference number: 5 (lower is better)
Translates to: SSQGDALSPGSKVPVLRARTKQH*RNKCIR
Trigger: GCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCT...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCAGGACAAAGCAGCACTaGAGGAACAAGTGTATACGC +
Preference number: 5 (lower is better)
Translates to: QGDALSPGSKVPVLRADVRTKQH*RNKCIR
Trigger: GCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCT...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAATGGTGTCCTTGACCTaGCCTTTCAGGCTGCTTGAA +
Preference number: 5 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRMVSLT*PFRLLE
Trigger: TTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCAT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTATGGTGTCCTTGACCTaGCCTTTCAGGCTGCTTGAA +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPMVSLT*PFRLLE
Trigger: TTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCAT...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 5 (lower is better)
Translates to: QGDALSPGSKVPVLRADVDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 5 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: PREMRFLLGPRCQCSEPMNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...CATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGTCGTGATTTGTTTCAGCTaGTCTACAAACTGGGGTGAG +
Preference number: 5 (lower is better)
Translates to: QGDALSPGSKVPVLRADVVICFS*STNWGE
Trigger: CTCACCCCAGTTTGTAGACAAGCTGAAACAAATCAC...GACATCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGTGATTTGTTTCAGCTaGTCTACAAACTGGGGTGAG +
Preference number: 5 (lower is better)
Translates to: SSQGDALSPGSKVPVLRAVICFS*STNWGE
Trigger: CTCACCCCAGTTTGTAGACAAGCTGAAACAAATCAC...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp TCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCTGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: SSQGDALSPGSKVPVLRACLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...GGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCTGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSCLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCCGATGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: IPGRCAFSWVQGASAPSRCLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...TCGGCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAATGGTGTCCTTGACCTaGCCTTTCAGGCTGCTTGAA +
Preference number: 5 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQMVSLT*PFRLLE
Trigger: TTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCAT...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 5 (lower is better)
Translates to: PCCSVVMSSQGDALSPGSDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...GGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp GTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGCAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: VIPGRCAFSWVQGASAPSNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...GCTCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTAGGACAAAGCAGCACTaGAGGAACAAGTGTATACGC +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPRTKQH*RNKCIR
Trigger: GCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCT...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 5 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGTGATTTGTTTCAGCTaGTCTACAAACTGGGGTGAG +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPVICFS*STNWGE
Trigger: CTCACCCCAGTTTGTAGACAAGCTGAAACAAATCAC...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp TGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGAGGACAAAGCAGCACTaGAGGAACAAGTGTATACGC +
Preference number: 5 (lower is better)
Translates to: CCSVVMSSQGDALSPGSKRTKQH*RNKCIR
Trigger: GCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCT...CTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTTGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPCLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp CTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGACAACAGGATCTCTTaGATCTCCTTCAGAAGCTCA +
Preference number: 5 (lower is better)
Translates to: LLLSGDVIPGRCAFSWVQDNRIS*ISFRSS
Trigger: TGAGCTTCTGAAGGAGATCAAAGAGATCCTGTTGTC...TTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp AGGGGACCCTGCTGCTCAGTGGTGATGTCATCCCAGGGAGATGCGCTTTCTCCTAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: RGPCCSVVMSSQGDALSPNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...AGGAGAAAGCGCATCTCCCTGGGATGACATCACCACTGAGCAGCAGGGTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ATGTCATCCCAGGGAGATGCGCTTTCTCCTGGGTCCAAGGTGCCAGTGCTCCGAAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: MSSQGDALSPGSKVPVLRNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...TCGGAGCACTGGCACCTTGGACCCAGGAGAAAGCGCATCTCCCTGGGATGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp GGAGACATTCAGGTCTCCGCGGTCGGCTTGCTGCTGGAGGAACTCCATGTCCAGGACAACAGGATCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: GDIQVSAVGLLLEELHVQDNRIC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGATCCTGTTGTC...CTGGACATGGAGTTCCTCCAGCAGCAAGCCGACCGCGGAGACCTGAATGTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232728.2
CDS-3UTR CAA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTACTGGGCATGGTGTCCTaGACCTTGCCTTTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLLGMVS*TLPFRL
Trigger: CAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCAG...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS TCA 90 bp ACCTTGCCTTTCAGGCTGCTTGAAGATAAACTCCTTTCTTCCAACTaGCAATCAAGCTTGGAAGCGTCATGGACTCTCTCCGTCATACAC +
Preference number: 5 (lower is better)
Translates to: TLPFRLLEDKLLSSN*QSSLEASWTLSVIH
Trigger: GTGTATGACGGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043925.16
ENSMUST00000114836.9
CDS-3UTR CAA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTACACTTCGTGGTGTGGTaGAGGAGTCTGGGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLHFVVW*RSLGSL
Trigger: CAAAGAGCCCAGACTCCTCAACCACACCACGAAGTG...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAAAGGTTCAGGAATCCTaGAGACAGCACCATCGCGGG +
Preference number: 5 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLKVQES*RQHHRG
Trigger: CCCGCGATGGTGCTGTCTCAAGGATTCCTGAACCTT...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS CCA 90 bp ATCTGCTTGAAGATAAACTCCTTTCTTCCAACTGACAATCAAGCTTaGAAGCGTCATGGACTCTCTCCGTCATACCTATGGATGCAACAG +
Preference number: 5 (lower is better)
Translates to: ICLKINSFLPTDNQA*KRHGLSPSYLWMQQ
Trigger: CTGTTGCATCCATAGGTATGACGGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTATCTTCAAGCAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232728.2
CDS-3UTR CAA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAATGGTGTCCTTGACCTaGCCTTTCAGGCTGCTTGAA +
Preference number: 5 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLMVSLT*PFRLLE
Trigger: TTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCAT...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTATGCCTTTCAGGCTGCTaGAAGATAAACTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLCLSGC*KINSFL
Trigger: AAGAAAGGAGTTTATCTTCAAGCAGCCTGAAAGGCA...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS-3UTR CAA 90 bp ACAAGTTTATTATGGAGCGGGTTTGGGCCAGTTGTTGACATGTTTGTCTTGTTAAACAAGACCATCATGTaGAGGATATACTTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: TSLLWSGFGPVVDMFVLLNKTIM*RIYLER
Trigger: CCTCTCCAAGTATATCCTCAACATGATGGTCTTGTT...TAACAAGACAAACATGTCAACAACTGGCCCAAACCCGCTCCATAATAAACTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042692.13
ENSMUST00000043925.16
ENSMUST00000114836.9
ENSMUST00000129046.9
ENSMUST00000232798.2
ENSMUST00000233898.2
CDS CCA 72 bp TCATGGACTCTCTCCGTCATACACGATCGGTGCCCCTaGGCGCTGCTCGCGCTCTCCCGGGTGTTTCCCCCG +
Preference number: 6 (lower is better)
Translates to: SWTLSVIHDRCP*ALLALSRVFPP
Trigger: CGGGGGAAACACCCGGGAGAGCGCGAGCAGCGCCCAGGGGCACCGATCGTGTATGACGGAGAGAGTCCATGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043925.16
ENSMUST00000114836.9
CDS GCA 72 bp GAAGCGTCATGGACTCTCTCCGTCATACCTAGCCTGTaGGAGCTCGGGGTCCCGCCGAGGTGGCCCTTTCCC +
Preference number: 6 (lower is better)
Translates to: EASWTLSVIPSL*ELGVPPRWPFP
Trigger: GGGAAAGGGCCACCTCGGCGGGACCCCGAGCTCGCACAGGCTAGGTATGACGGAGAGAGTCCATGACGCTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042692.13
ENSMUST00000129046.9
CDS GCA 72 bp GAAGCGTCATGGACTCTCTCCGTCATACACGATCGGTaGCCCTGGGCGCTGCTCGCGCTCTCCCGGGTGTTT +
Preference number: 6 (lower is better)
Translates to: EASWTLSVIHDR*PWALLALSRVF
Trigger: AAACACCCGGGAGAGCGCGAGCAGCGCCCAGGGGCACCGATCGTGTATGACGGAGAGAGTCCATGACGCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043925.16
ENSMUST00000114836.9
CDS TCA 72 bp ACAGGAAATCCATGGCAACGCTTGTGCGGGAGCATTTaGAACGAGGGGGAGGGAGGTCCGGACCTGCAGTCC +
Preference number: 6 (lower is better)
Translates to: TGNPWQRLCGSI*NEGEGGPDLQS
Trigger: GGACTGCAGGTCCGGACCTCCCTCCCCCTCGTTTCAAATGCTCCCGCACAAGCGTTGCCATGGATTTCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000233615.2
CDS TCA 72 bp CAGGATCTGCTTGAAGATAAACTCCTTTCTTCCAACTaGCAATCAAGCTTGGAAGCGTCATGGACTCTCTCC +
Preference number: 6 (lower is better)
Translates to: QDLLEDKLLSSN*QSSLEASWTLS
Trigger: GGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTATCTTCAAGCAGATCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232728.2
CDS CCA 72 bp AAGATAAACTCCTTTCTTCCAACTGACAATCAAGCTTaGAAGCGTCATGGACTCTCTCCGTCATACACGATC +
Preference number: 6 (lower is better)
Translates to: KINSFLPTDNQA*KRHGLSPSYTI
Trigger: GATCGTGTATGACGGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043925.16
ENSMUST00000114836.9