RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TCP10A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071322

Ensembl transcript IDs: ENSMUST00000095726.11, ENSMUST00000128533.8, ENSMUST00000129709.8, ENSMUST00000138222.8, ENSMUST00000140192.8, ENSMUST00000144861.2

Found 126 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCACAGAAGCCATGTCCAGGACCTCATTTCTGGCTACTGCTTCTCTaGCCTCTCTCCCAAGATGGTGGTGGCTACATGGTCTCTTTCTTT +
Preference number: 1 (lower is better)
Translates to: PQKPCPGPHFWLLLL*PLSQDGGGYMVSFF
Trigger: AAAGAAAGAGACCATGTAGCCACCACCATCTTGGGAGAGAGGTCAGAGAAGCAGTAGCCAGAAATGAGGTCCTGGACATGGCTTCTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
3UTR GCA 90 bp AGAACTCCTCATCAGTGTAAGGACTGGAAGATTGAGATTGGTGGCTaGCTAGTAGCTAGGGAGGAATCTCTCCTACAGCATGGCAGAGTG +
Preference number: 1 (lower is better)
Translates to: RTPHQCKDWKIEIGG*LVAREESLLQHGRV
Trigger: CACTCTGCCATGCTGTAGGAGAGATTCCTCCCTAGCTACTAGGCAGCCACCAATCTCAATCTTCCAGTCCTTACACTGATGAGGAGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
3UTR-3UTR CCA 90 bp TCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCTCTGCTCTAACAGAAGGCATGGTCTaGACAAGGCCACAGAAGCCA +
Preference number: 2 (lower is better)
Translates to: SQELAGSGHVAPIVPSALTEGMV*TRPQKP
Trigger: TGGCTTCTGTGGCCTTGTCCAGACCATGCCTTCTGT...TAGAGCAGAGGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
3UTR-3UTR GCA 90 bp ATTGAGATTGGTGGCTGCCTAGTAGCTAGGGAGGAATCTCTCCTACAGCATGGCCTCATTTCTGGCTACTaGTTCTCTGACCTCTCTCCC +
Preference number: 2 (lower is better)
Translates to: IEIGGCLVAREESLLQHGLISGY*FSDLSP
Trigger: GGGAGAGAGGTCAGAGAAGCAGTAGCCAGAAATGAG...GCCATGCTGTAGGAGAGATTCCTCCCTAGCTACTAGGCAGCCACCAATCTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
3UTR CAA 90 bp CAAGGGAATCGTGAGTCGCTTTGTCTGTTTTGGTCAAAACTATATTaGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCA +
Preference number: 2 (lower is better)
Translates to: QGNRESLCLFWSKLY*EIGAYCLALSLLDA
Trigger: TGCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAAGCGACTCACGATTCCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
3UTR GCA 72 bp CCAAGCAAAAACACGGAGCCAGCTGTTGTTAACGGCTaGTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCT +
Preference number: 3 (lower is better)
Translates to: PSKNTEPAVVNG*SQELAGSGHVA
Trigger: AGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCAGCCGTTAACAACAGCTGGCTCCGTGTTTTTGCTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
3UTR TCA 72 bp CCATGTCCAGGACCTCATTTCTGGCTACTGCTTCTCTaGCCTCTCTCCCAAGATGGTGGTGGCTACATGGTC +
Preference number: 3 (lower is better)
Translates to: PCPGPHFWLLLL*PLSQDGGGYMV
Trigger: GACCATGTAGCCACCACCATCTTGGGAGAGAGGTCAGAGAAGCAGTAGCCAGAAATGAGGTCCTGGACATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
3UTR GCA 72 bp CATCAGTGTAAGGACTGGAAGATTGAGATTGGTGGCTaGCTAGTAGCTAGGGAGGAATCTCTCCTACAGCAT +
Preference number: 3 (lower is better)
Translates to: HQCKDWKIEIGG*LVAREESLLQH
Trigger: ATGCTGTAGGAGAGATTCCTCCCTAGCTACTAGGCAGCCACCAATCTCAATCTTCCAGTCCTTACACTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
3UTR CCA 72 bp GCTTTGTCTGTTTTGGTCAAAACTATATTTGGAGATTaGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGC +
Preference number: 3 (lower is better)
Translates to: ALSVLVKTIFGD*SLLPGLESVGC
Trigger: GCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
3UTR TCA 72 bp TGGTTAAATCAAGTCTATTCATACATCAGGCACCAGTaGAGATACATCCCCCTGGATCCCATTGATGAGGAC +
Preference number: 3 (lower is better)
Translates to: WLNQVYSYIRHQ*RYIPLDPIDED
Trigger: GTCCTCATCAATGGGATCCAGGGGGATGTATCTTCACTGGTGCCTGATGTATGAATAGACTTGATTTAACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
3UTR CCA 72 bp GATTGTCAAGGGAATCGTGAGTCGCTTTGTCTGTTTTaGTCAAAACTATATTTGGAGATTGGAGCCTACTGC +
Preference number: 3 (lower is better)
Translates to: DCQGNRESLCLF*SKLYLEIGAYC
Trigger: GCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAAGCGACTCACGATTCCCTTGACAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TCCCAGGAAATGAGGGGGCAGCAGGGCAGACTCACAGGAACAGGTAGGAGGTGTCACTTGTTAGGAAACTaGACCACTTCAACACCATCT +
Preference number: 4 (lower is better)
Translates to: SQEMRGQQGRLTGTGRRCHLLGN*TTSTPS
Trigger: AGATGGTGTTGAAGTGGTGCAGTTTCCTAACAAGTG...ACACCTCCTACCTGTTCCTGTGAGTCTGCCCTGCTGCCCCCTCATTTCCTGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
CDS-3UTR TCA 90 bp TGCTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCTCTGCTCTTTCTGATTGGACTTaGTCTTCTTCATGTCACCGT +
Preference number: 4 (lower is better)
Translates to: CSQELAGSGHVAPIVPSALSDWT*SSSCHR
Trigger: ACGGTGACATGAAGAAGATCAAGTCCAATCAGAAAG...AGCAGAGGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CCA 90 bp TCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGGCATCGATCTGGCTTTaGAGGTGCTGCTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: SVLVKTIFGDWSLLPGLEASIWL*RCCFLA
Trigger: GGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGC...CTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp AATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCCAGGATTGTCAAATCTGGCTTTGGAGGTaGTGCTTCTTGGCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: NFWMSLYSSCAGDLQDCQIWLWR*CFLAWL
Trigger: AAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGAT...TTGACAATCCTGGAGATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CCA 90 bp TTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCCAGGATTGTGCTGCTTCTTGGCCTaGCTTACCACAACCTCATCA +
Preference number: 4 (lower is better)
Translates to: LQFLDVSLLLMCRGSPGLCCFLA*LTTTSS
Trigger: TGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCA...CAATCCTGGAGATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CCA 90 bp TTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTATCAGAGCATCGATCTaGCTTTGGAGGTGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: LSVLVKTIFGDWSLLPGLIRASI*LWRCCF
Trigger: GAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGAT...AAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR TCA 90 bp AAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCCTTTCTGATTGGACTTaGTCTTCTTCATGTCACCGT +
Preference number: 4 (lower is better)
Translates to: KTIFGDWSLLPGLESVGCLSDWT*SSSCHR
Trigger: ACGGTGACATGAAGAAGATCAAGTCCAATCAGAAAG...GCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR TCA 90 bp AAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCACTTTCTGATTGGACTTaGTCTTCTTCATGTCACCGT +
Preference number: 4 (lower is better)
Translates to: KLYLEIGAYCLALSLLDALSDWT*SSSCHR
Trigger: ACGGTGACATGAAGAAGATCAAGTCCAATCAGAAAG...TGCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp AAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCCTGCCCAAGCTTCTTTaGAGAAATTTGGAAGACATG +
Preference number: 4 (lower is better)
Translates to: KTIFGDWSLLPGLESVGCLPKLL*RNLEDM
Trigger: CATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAG...GCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGCTGCCCAAGCTTCTTTaGAGAAATTTGGAAGACATG +
Preference number: 4 (lower is better)
Translates to: WSKLYLEIGAYCLALSLLLPKLL*RNLEDM
Trigger: CATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAG...CAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp GTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATTTGTTGGAATATTCTaGACCCACAGTGCATTTGGG +
Preference number: 4 (lower is better)
Translates to: VKTIFGDWSLLPGLESVGFVGIF*THSAFG
Trigger: CCCAAATGCACTGTGGGTGCAGAATATTCCAACAAA...TCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGTTTGTTGGAATATTCTaGACCCACAGTGCATTTGGG +
Preference number: 4 (lower is better)
Translates to: WSKLYLEIGAYCLALSLLFVGIF*THSAFG
Trigger: CCCAAATGCACTGTGGGTGCAGAATATTCCAACAAA...CAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp AAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCGTAGTGTCCGAGGTTTaGTGTATTTCTTTAGGAGCT +
Preference number: 4 (lower is better)
Translates to: KTIFGDWSLLPGLESVGCVVSEV*CISLGA
Trigger: AGCTCCTAAAGAAATACAGCAAACCTCGGACACTAC...GCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp GTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGAGTAGTGTCCGAGGTTTaGTGTATTTCTTTAGGAGCT +
Preference number: 4 (lower is better)
Translates to: VKTIFGDWSLLPGLESVGVVSEV*CISLGA
Trigger: AGCTCCTAAAGAAATACAGCAAACCTCGGACACTAC...TCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGCTGCCCAAGCTTCTTTaGAGAAATTTGGAAGACATG +
Preference number: 4 (lower is better)
Translates to: CLFWSKLYLEIGAYCLALLPKLL*RNLEDM
Trigger: CATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAG...CAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCCAGGATTGGTTCTGGTGACATTCTaGCCAAGCTTCTTTGCAGAA +
Preference number: 4 (lower is better)
Translates to: LQFLDVSLLLMCRGSPGLVLVTF*PSFFAE
Trigger: TTCTGCAAAGAAGCTTGGGCAGAATGTCACCAGAAC...CAATCCTGGAGATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTTGTTGGAATATTCTaGACCCACAGTGCATTTGGG +
Preference number: 4 (lower is better)
Translates to: FWSKLYLEIGAYCLALSLFVGIF*THSAFG
Trigger: CCCAAATGCACTGTGGGTGCAGAATATTCCAACAAA...CAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATCACTTGTTAGGAAACTaGACCACTTCAACACCATCT +
Preference number: 4 (lower is better)
Translates to: SKLYLEIGAYCLALSLLDHLLGN*TTSTPS
Trigger: AGATGGTGTTGAAGTGGTGCAGTTTCCTAACAAGTG...ATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp CAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCCAGGATTGTCACACTTGTTAGGAAACTaGACCACTTCAACACCATCT +
Preference number: 4 (lower is better)
Translates to: QFLDVSLLLMCRGSPGLSHLLGN*TTSTPS
Trigger: AGATGGTGTTGAAGTGGTGCAGTTTCCTAACAAGTG...TGACAATCCTGGAGATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTTTTGTTGGAATATTCTaGACCCACAGTGCATTTGGG +
Preference number: 4 (lower is better)
Translates to: LSVLVKTIFGDWSLLPGLFVGIF*THSAFG
Trigger: CCCAAATGCACTGTGGGTGCAGAATATTCCAACAAA...AAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TGTGTGAATTTATGGGATAGAATGCCACATGAGGTTCTGTCTAGACACTTCAGGGTAGTGTCCGAGGTTTaGTGTATTTCTTTAGGAGCT +
Preference number: 4 (lower is better)
Translates to: CVNLWDRMPHEVLSRHFRVVSEV*CISLGA
Trigger: AGCTCCTAAAGAAATACAGCAAACCTCGGACACTAC...CCTGAAGTGTCTAGACAGAACCTCATGTGGCATTCTATCCCATAAATTCACACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
CDS-3UTR GCA 90 bp TTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTTTGCCATTTGGGTGTTaGTTTTCCTTTGTCTCATCA +
Preference number: 4 (lower is better)
Translates to: LVKTIFGDWSLLPGLESVLPFGC*FSFVSS
Trigger: TGATGAGACAAAGGAAAAGCAACACCCAAATGGCAA...AACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp CATGGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGTAGTGTCCGAGGTTTaGTGTATTTCTTTAGGAGCT +
Preference number: 4 (lower is better)
Translates to: HGLFLYNFWMSLYSSCAGVVSEV*CISLGA
Trigger: AGCTCCTAAAGAAATACAGCAAACCTCGGACACTAC...CCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAAAGAAAGAGACCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTTTGCCATTTGGGTGTTaGTTTTCCTTTGTCTCATCA +
Preference number: 4 (lower is better)
Translates to: LSVLVKTIFGDWSLLPGLLPFGC*FSFVSS
Trigger: TGATGAGACAAAGGAAAAGCAACACCCAAATGGCAA...AAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp TTTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTTGCCATTTGGGTGTTaGTTTTCCTTTGTCTCATCA +
Preference number: 4 (lower is better)
Translates to: FVCFGQNYIWRLEPTAWPLPFGC*FSFVSS
Trigger: TGATGAGACAAAGGAAAAGCAACACCCAAATGGCAA...AGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR GCA 90 bp CATGGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGCACTTGTTAGGAAACTaGACCACTTCAACACCATCT +
Preference number: 4 (lower is better)
Translates to: HGLFLYNFWMSLYSSCAGHLLGN*TTSTPS
Trigger: AGATGGTGTTGAAGTGGTGCAGTTTCCTAACAAGTG...CCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAAAGAAAGAGACCATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR TCA 90 bp AAAACAAACAAACAAACAAACACCCACATTCTCAGAACTCCTCATCAGTGTAAGCTTTCTGATTGGACTTaGTCTTCTTCATGTCACCGT +
Preference number: 4 (lower is better)
Translates to: KTNKQTNTHILRTPHQCKLSDWT*SSSCHR
Trigger: ACGGTGACATGAAGAAGATCAAGTCCAATCAGAAAG...CTTACACTGATGAGGAGTTCTGAGAATGTGGGTGTTTGTTTGTTTGTTTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
CDS-3UTR GCA 90 bp AAAACAAACAAACAAACAAACACCCACATTCTCAGAACTCCTCATCAGTGTAAGCTGCCCAAGCTTCTTTaGAGAAATTTGGAAGACATG +
Preference number: 4 (lower is better)
Translates to: KTNKQTNTHILRTPHQCKLPKLL*RNLEDM
Trigger: CATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAG...CTTACACTGATGAGGAGTTCTGAGAATGTGGGTGTTTGTTTGTTTGTTTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
CDS CCA 90 bp TGTTGCTTGCTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTTGGTaGCCTCCGCATCCTGCTTCTTCAAGGTCTTCAGCTCCGCACGGA +
Preference number: 5 (lower is better)
Translates to: CCLLLPGWASLYRLW*PPHPASSRSSAPHG
Trigger: TCCGTGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 90 bp GAGTGTTGCTTGCTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTTaGTGGCCTCCGCATCCTGCTTCTTCAAGGTCTTCAGCTCCGCAC +
Preference number: 5 (lower is better)
Translates to: ECCLLLPGWASLYRL*WPPHPASSRSSAPH
Trigger: GTGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS-3UTR CAA 90 bp TCCCAGGAAATGAGGGGGCAGCAGGGCAGACTCACAGGAACAGGTAGGAGGTGTCCGAAGTCTCTGGATTaGAGGACCAGATGTCAGCCA +
Preference number: 5 (lower is better)
Translates to: SQEMRGQQGRLTGTGRRCPKSLD*RTRCQP
Trigger: TGGCTGACATCTGGTCCTCAAATCCAGAGACTTCGG...ACACCTCCTACCTGTTCCTGTGAGTCTGCCCTGCTGCCCCCTCATTTCCTGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
CDS-3UTR CAA 90 bp GGCTGCTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCTCTCCGAAGTCTCTGGATTaGAGGACCAGATGTCAGCCA +
Preference number: 5 (lower is better)
Translates to: GCSQELAGSGHVAPIVPSPKSLD*RTRCQP
Trigger: TGGCTGACATCTGGTCCTCAAATCCAGAGACTTCGG...AGAGGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGCTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCTCTGCTCCGAAGTCTCTGGATTaGAGGACCAGATGTCAGCCA +
Preference number: 5 (lower is better)
Translates to: CSQELAGSGHVAPIVPSAPKSLD*RTRCQP
Trigger: TGGCTGACATCTGGTCCTCAAATCCAGAGACTTCGG...AGCAGAGGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS CCA 90 bp AGCTCCGCACGGATCTCCTGGTTCTCCTTTATCAGAGCATCGATCTaGCTTTGGAGGTGCTGCTTCTTGGCCTGGCTTACCACAACCTCA +
Preference number: 5 (lower is better)
Translates to: SSARISWFSFIRASI*LWRCCFLAWLTTTS
Trigger: TGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGATCCGTGCGGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS CCA 90 bp TCCGCATCCTGCTTCTTCAAGGTCTTCAGCTCCGCACGGATCTCCTaGTTCTCCTTTATCAGAGCATCGATCTGGCTTTGGAGGTGCTGC +
Preference number: 5 (lower is better)
Translates to: SASCFFKVFSSARIS*FSFIRASIWLWRCC
Trigger: GCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGATCCGTGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AACGGCTGCTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCCACCATCTGGGTAGGTaGTGTGCATTGTTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: NGCSQELAGSGHVAPIVPHHLGR*CALFVH
Trigger: ATGCACAAACAATGCACACAACCTACCCAGATGGTG...GGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCAGCCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS CCA 90 bp GCACGGATCTCCTGGTTCTCCTTTATCAGAGCATCGATCTGGCTTTaGAGGTGCTGCTTCTTGGCCTGGCTTACCACAACCTCATCAAGC +
Preference number: 5 (lower is better)
Translates to: ARISWFSFIRASIWL*RCCFLAWLTTTSSS
Trigger: GCTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGATCCGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGCTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCTCTGCTGTTGGACCCTTTTCCTaGACTCAGATCCTCCAACAT +
Preference number: 5 (lower is better)
Translates to: CSQELAGSGHVAPIVPSAVGPFS*TQILQH
Trigger: ATGTTGGAGGATCTGAGTCAAGGAAAAGGGTCCAAC...AGCAGAGGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AACGGCTGCTCCCAGGAACTAGCTGGCAGTGGTCACGTTGCTCCCATTGTACCCCTTGCCATTTGGGTGTaGCTTTTCCTTTGTCTCATC +
Preference number: 5 (lower is better)
Translates to: NGCSQELAGSGHVAPIVPLAIWV*LFLCLI
Trigger: GATGAGACAAAGGAAAAGCAACACCCAAATGGCAAG...GGGTACAATGGGAGCAACGTGACCACTGCCAGCTAGTTCCTGGGAGCAGCCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS GCA 90 bp CTGCACCCACAGTGCATTTGGGGAAAAACAAGGGATGACCCTGCTTaGTTGAGCATGCAGGAGAAGTTCACCGTCCGAAGTCTCTGGATT +
Preference number: 5 (lower is better)
Translates to: LHPQCIWGKTRDDPA*LSMQEKFTVRSLWI
Trigger: AATCCAGAGACTTCGGACGGTGAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATCCCTTGTTTTTCCCCAAATGCACTGTGGGTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 90 bp TGCAGCCCCACAACCTCATCAAGCTTGCTGTCTTCCTCAGTGATCTaGGCTGTGCTCTCCATCTTCCTCTTCTCATGGTTGGACCCTTTT +
Preference number: 5 (lower is better)
Translates to: CSPTTSSSLLSSSVI*AVLSIFLFSWLDPF
Trigger: AAAAGGGTCCAACCATGAGAAGAGGAAGATGGAGAGCACAGCCCAGATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGGGCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 90 bp TCCGCATCCTGCTTCTTCAAGGTCTTCAGCTCCGCACGGATCTCCTaGTTCTCCTTTATCAGAGCATCGATCTGGCTTTGGAGGTCTTTG +
Preference number: 5 (lower is better)
Translates to: SASCFFKVFSSARIS*FSFIRASIWLWRSL
Trigger: CAAAGACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGATCCGTGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 90 bp GATGATGGTTCGCCCGTCGCTGAGCATCCGCTCCACCTTGCCATTTaGGTGTTGCTTTTCCTTTGTCTCATCAGTCTTTGTAGTGTCCGA +
Preference number: 5 (lower is better)
Translates to: DDGSPVAEHPLHLAI*VLLFLCLISLCSVR
Trigger: TCGGACACTACAAAGACTGATGAGACAAAGGAAAAGCAACACCCAAATGGCAAGGTGGAGCGGATGCTCAGCGACGGGCGAACCATCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
CDS-3UTR CAA 90 bp TGTTGGCCAAGCAAAAACACGGAGCCAGCTGTTGTTAACGGCTGCTCCCAGGAAGCTCCACCTTGCCATTaGGGTGTTGCTTTTCCTTTG +
Preference number: 5 (lower is better)
Translates to: CWPSKNTEPAVVNGCSQEAPPCH*GVAFPL
Trigger: CAAAGGAAAAGCAACACCCAAATGGCAAGGTGGAGC...TTCCTGGGAGCAGCCGTTAACAACAGCTGGCTCCGTGTTTTTGCTTGGCCAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS GCA 90 bp GATGATTGTCTTGTGAGCTCTGTCCCAAGGTCACAGATCTGCTTCTaGAGCCCCACAACCTCATCAAGCTTGCTGTCTTCCTCAGTGATC +
Preference number: 5 (lower is better)
Translates to: DDCLVSSVPRSQICF*SPTTSSSLLSSSVI
Trigger: GATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGGGCTGCAGAAGCAGATCTGTGACCTTGGGACAGAGCTCACAAGACAATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS GCA 90 bp CACCAAGATGATTGTCTTGTGAGCTCTGTCCCAAGGTCACAGATCTaGTTCTGCAGCCCCACAACCTCATCAAGCTTGCTGTCTTCCTCA +
Preference number: 5 (lower is better)
Translates to: HQDDCLVSSVPRSQI*FCSPTTSSSLLSSS
Trigger: TGAGGAAGACAGCAAGCTTGATGAGGTTGTGGGGCTGCAGAAGCAGATCTGTGACCTTGGGACAGAGCTCACAAGACAATCATCTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS GCA 90 bp ATCTCCTGGTTCTCCTTTATCAGAGCATCGATCTGGCTTTGGAGGTaGTGCTTCTTGGCCTGGCTTACCACAACCTCATCAAGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: ISWFSFIRASIWLWR*CFLAWLTTTSSSLL
Trigger: CAGCAAGCTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS CCA 90 bp TCTCCTTTATCAGAGCATCGATCTGGCTTTGGAGGTGCTGCTTCTTaGCCTGGCTTACCACAACCTCATCAAGCTTGCTGTCTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: SPLSEHRSGFGGAAS*PGLPQPHQACCLPQ
Trigger: CTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AACACGGAGCCAGCTGTTGTTAACGGCTGCTCCCAGGAACTAGCTGGCAGTGGTTCTGCCCAAGCTTCTTaGCAGAAATTTGGAAGACAT +
Preference number: 5 (lower is better)
Translates to: NTEPAVVNGCSQELAGSGSAQAS*QKFGRH
Trigger: ATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGA...ACCACTGCCAGCTAGTTCCTGGGAGCAGCCGTTAACAACAGCTGGCTCCGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp GGGATAGAAGTAGATGCAGGCAGGTGTTGGCCAAGCAAAAACACGGAGCCAGCTCACCATCTGGGTAGGTaGTGTGCATTGTTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: GIEVDAGRCWPSKNTEPAHHLGR*CALFVH
Trigger: ATGCACAAACAATGCACACAACCTACCCAGATGGTG...AGCTGGCTCCGTGTTTTTGCTTGGCCAACACCTGCCTGCATCTACTTCTATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095726.11
CDS GCA 90 bp GATTTGAGGACCAGATGTCAGCCAGTGACTCTGTGTCCAGGAATGTaGTGTCAGACAGTGGTTCTGGTGACATTCTGCCCAAGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: DLRTRCQPVTLCPGM*CQTVVLVTFCPSFF
Trigger: AAAGAAGCTTGGGCAGAATGTCACCAGAACCACTGTCTGACAGCACATTCCTGGACACAGAGTCACTGGCTGACATCTGGTCCTCAAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 90 bp TGGCTTACCACAACCTCATCAAGCTTGCTGTCTTCCTCAGTGATCTaGGCTGTGCTCTCCATCTTCCTCTTCTCATGGTTGGACCCTTTT +
Preference number: 5 (lower is better)
Translates to: WLTTTSSSLLSSSVI*AVLSIFLFSWLDPF
Trigger: AAAAGGGTCCAACCATGAGAAGAGGAAGATGGAGAGCACAGCCCAGATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGTAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS CCA 90 bp TTTATCAGAGCATCGATCTGGCTTTGGAGGTGCTGCTTCTTGGCCTaGCTTACCACAACCTCATCAAGCTTGCTGTCTTCCTCAGTGATC +
Preference number: 5 (lower is better)
Translates to: FIRASIWLWRCCFLA*LTTTSSSLLSSSVI
Trigger: GATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TCTGGCTACTGCTTCTCTGACCTCTCTCCCAAGATGGTGGTGGCTACATGGTCTGGTAGGTTGTGTGCATaGTTTGTGCATCCGCATAAT +
Preference number: 5 (lower is better)
Translates to: SGYCFSDLSPKMVVATWSGRLCA*FVHPHN
Trigger: ATTATGCGGATGCACAAACAATGCACACAACCTACC...AGACCATGTAGCCACCACCATCTTGGGAGAGAGGTCAGAGAAGCAGTAGCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCCCGAAGTCTCTGGATTaGAGGACCAGATGTCAGCCA +
Preference number: 5 (lower is better)
Translates to: KTIFGDWSLLPGLESVGCPKSLD*RTRCQP
Trigger: TGGCTGACATCTGGTCCTCAAATCCAGAGACTTCGG...GCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp GTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGAGATGACCCTGCTTGCTaGAGCATGCAGGAGAAGTTC +
Preference number: 5 (lower is better)
Translates to: VKTIFGDWSLLPGLESVGDDPAC*SMQEKF
Trigger: GAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATC...TCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp CAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCCAGGATTGTCAGATGACCCTGCTTGCTaGAGCATGCAGGAGAAGTTC +
Preference number: 5 (lower is better)
Translates to: QFLDVSLLLMCRGSPGLSDDPAC*SMQEKF
Trigger: GAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATC...TGACAATCCTGGAGATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGATGACCCTGCTTGCTaGAGCATGCAGGAGAAGTTC +
Preference number: 5 (lower is better)
Translates to: SKLYLEIGAYCLALSLLDDDPAC*SMQEKF
Trigger: GAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATC...ATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCTCCTTCCTGGTTCCATaGGGGAAGGTGATGATGGTT +
Preference number: 5 (lower is better)
Translates to: KTIFGDWSLLPGLESVGCSFLVP*GKVMMV
Trigger: AACCATCATCACCTTCCCCAATGGAACCAGGAAGGA...GCATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGTCCTTCCTGGTTCCATaGGGGAAGGTGATGATGGTT +
Preference number: 5 (lower is better)
Translates to: WSKLYLEIGAYCLALSLLSFLVP*GKVMMV
Trigger: AACCATCATCACCTTCCCCAATGGAACCAGGAAGGA...CAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGATGAGGGTGGTCTTCTaGTCAGCACTGATCTCCTTC +
Preference number: 5 (lower is better)
Translates to: WSKLYLEIGAYCLALSLLMRVVF*SALISF
Trigger: GAAGGAGATCAGTGCTGACAAGAAGACCACCCTCAT...CAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp CTCTCTCCCAAGATGGTGGTGGCTACATGGTCTCTTTCTTTACAATTTTTGGATAGCATCGATCTGGCTTaGGAGGTGCTGCTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: LSPKMVVATWSLSLQFLDSIDLA*EVLLLG
Trigger: GCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCT...ATCCAAAAATTGTAAAGAAAGAGACCATGTAGCCACCACCATCTTGGGAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGTTGGACCCTTTTCCTaGACTCAGATCCTCCAACAT +
Preference number: 5 (lower is better)
Translates to: WSKLYLEIGAYCLALSLLVGPFS*TQILQH
Trigger: ATGTTGGAGGATCTGAGTCAAGGAAAAGGGTCCAAC...CAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp GGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCCAGGATTGTCAAGGGAATCTCTGCCCAAGCTTCTTaGCAGAAATTTGGAAGACAT +
Preference number: 5 (lower is better)
Translates to: GCLFTPHVQGISRIVKGISAQAS*QKFGRH
Trigger: ATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGA...GATTCCCTTGACAATCCTGGAGATCCCCTGCACATGAGGAGTAAAGAGACATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGGCTCCACCTTGCCATTaGGGTGTTGCTTTTCCTTTG +
Preference number: 5 (lower is better)
Translates to: SVLVKTIFGDWSLLPGLEAPPCH*GVAFPL
Trigger: CAAAGGAAAAGCAACACCCAAATGGCAAGGTGGAGC...CTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGCTCCACCTTGCCATTaGGGTGTTGCTTTTCCTTTG +
Preference number: 5 (lower is better)
Translates to: SKLYLEIGAYCLALSLLDAPPCH*GVAFPL
Trigger: CAAAGGAAAAGCAACACCCAAATGGCAAGGTGGAGC...ATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGTCCTTCCTGGTTCCATaGGGGAAGGTGATGATGGTT +
Preference number: 5 (lower is better)
Translates to: CLFWSKLYLEIGAYCLALSFLVP*GKVMMV
Trigger: AACCATCATCACCTTCCCCAATGGAACCAGGAAGGA...CAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATATGAGGGTGGTCTTCTaGTCAGCACTGATCTCCTTC +
Preference number: 5 (lower is better)
Translates to: SKLYLEIGAYCLALSLLDMRVVF*SALISF
Trigger: GAAGGAGATCAGTGCTGACAAGAAGACCACCCTCAT...ATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp GTAGATGCAGGCAGGTGTTGGCCAAGCAAAAACACGGAGCCAGCTGTTGTTAACAATTTTTCAGTCCACTaGTTAGGAAACTGCACCACT +
Preference number: 5 (lower is better)
Translates to: VDAGRCWPSKNTEPAVVNNFSVH*LGNCTT
Trigger: AGTGGTGCAGTTTCCTAACAAGTGGACTGAAAAATT...GTTAACAACAGCTGGCTCCGTGTTTTTGCTTGGCCAACACCTGCCTGCATCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095726.11
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp ACATGGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGTGGAGGTGCTGCTTCTaGGCCTGGCTTACCACAACC +
Preference number: 5 (lower is better)
Translates to: TWSLSLQFLDVSLLLMCRWRCCF*AWLTTT
Trigger: GGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCA...CCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAAAGAAAGAGACCATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS TCA 90 bp GCTTCTGTTTGGAGGACTTCCAGAAAGCTCATCTCTTTCATCCCATaGGGTTGTCCTCTCGGAATCAGTTCCCTCTATCTTTATGTACAC +
Preference number: 5 (lower is better)
Translates to: ASVWRTSRKLISFIP*GCPLGISSLYLYVH
Trigger: GTGTACATAAAGATAGAGGGAACTGATTCCGAGAGGACAACCTCATGGGATGAAAGAGATGAGCTTTCTGGAAGTCCTCCAAACAGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 90 bp TGTATAACCTTTTCATCCACAGATGTAAAAGACAGCATTTCATCCTaGGAGTCTGTTCCTCCGGTGGCCATTGTGCTTCTGTTTGGAGGA +
Preference number: 5 (lower is better)
Translates to: CITFSSTDVKDSISS*ESVPPVAIVLLFGG
Trigger: TCCTCCAAACAGAAGCACAATGGCCACCGGAGGAACAGACTCCCAGGATGAAATGCTGTCTTTTACATCTGTGGATGAAAAGGTTATACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS-3UTR CAA 90 bp TCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGATGTTGGACCCTTTTCCTaGACTCAGATCCTCCAACAT +
Preference number: 5 (lower is better)
Translates to: SKLYLEIGAYCLALSLLDVGPFS*TQILQH
Trigger: ATGTTGGAGGATCTGAGTCAAGGAAAAGGGTCCAAC...ATCCAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTATGAGGGTGGTCTTCTaGTCAGCACTGATCTCCTTC +
Preference number: 5 (lower is better)
Translates to: LSVLVKTIFGDWSLLPGLMRVVF*SALISF
Trigger: GAAGGAGATCAGTGCTGACAAGAAGACCACCCTCAT...AAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGCACCATCTGGGTAGGTaGTGTGCATTGTTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: FWSKLYLEIGAYCLALSLHHLGR*CALFVH
Trigger: ATGCACAAACAATGCACACAACCTACCCAGATGGTG...CAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGCACCATCTGGGTAGGTaGTGTGCATTGTTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: CLFWSKLYLEIGAYCLALHHLGR*CALFVH
Trigger: ATGCACAAACAATGCACACAACCTACCCAGATGGTG...CAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TTTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTGTTGGACCCTTTTCCTaGACTCAGATCCTCCAACAT +
Preference number: 5 (lower is better)
Translates to: FVCFGQNYIWRLEPTAWPVGPFS*TQILQH
Trigger: ATGTTGGAGGATCTGAGTCAAGGAAAAGGGTCCAAC...AGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp CATGGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGCTCCACCTTGCCATTaGGGTGTTGCTTTTCCTTTG +
Preference number: 5 (lower is better)
Translates to: HGLFLYNFWMSLYSSCAGAPPCH*GVAFPL
Trigger: CAAAGGAAAAGCAACACCCAAATGGCAAGGTGGAGC...CCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAAAGAAAGAGACCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGGTAGGTTGTGTGCATaGTTTGTGCATCCGCATAAT +
Preference number: 5 (lower is better)
Translates to: LVKTIFGDWSLLPGLESVGRLCA*FVHPHN
Trigger: ATTATGCGGATGCACAAACAATGCACACAACCTACC...AACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp CTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTGGTAGGTTGTGTGCATaGTTTGTGCATCCGCATAAT +
Preference number: 5 (lower is better)
Translates to: LFWSKLYLEIGAYCLALSGRLCA*FVHPHN
Trigger: ATTATGCGGATGCACAAACAATGCACACAACCTACC...ACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp CTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTTCTGCCCAAGCTTCTTaGCAGAAATTTGGAAGACAT +
Preference number: 5 (lower is better)
Translates to: LFWSKLYLEIGAYCLALSSAQAS*QKFGRH
Trigger: ATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGA...ACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TTTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTCTTGCCATTTGGGTGTaGCTTTTCCTTTGTCTCATC +
Preference number: 5 (lower is better)
Translates to: FVCFGQNYIWRLEPTAWPLAIWV*LFLCLI
Trigger: GATGAGACAAAGGAAAAGCAACACCCAAATGGCAAG...AGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TCGCTTTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGGTAGGTTGTGTGCATaGTTTGTGCATCCGCATAAT +
Preference number: 5 (lower is better)
Translates to: SLCLFWSKLYLEIGAYCLGRLCA*FVHPHN
Trigger: ATTATGCGGATGCACAAACAATGCACACAACCTACC...CAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAAAGCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTGTTGCTTCTTTGCAGAAATTaGGAAGACATGTGTATAACC +
Preference number: 5 (lower is better)
Translates to: WSKLYLEIGAYCLALSLLLLCRN*EDMCIT
Trigger: GGTTATACACATGTCTTCCAAATTTCTGCAAAGAAG...CAACAGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp TTGTCTGTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTTCTGCCCAAGCTTCTTaGCAGAAATTTGGAAGACAT +
Preference number: 5 (lower is better)
Translates to: LSVLVKTIFGDWSLLPGLSAQAS*QKFGRH
Trigger: ATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGA...AAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAACAGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp GGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTTGCCATTTGGGTGTaGCTTTTCCTTTGTCTCATC +
Preference number: 5 (lower is better)
Translates to: GLFLYNFWMSLYSSCAGDLAIWV*LFLCLI
Trigger: GATGAGACAAAGGAAAAGCAACACCCAAATGGCAAG...ATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAAAGAAAGAGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AAGATGGTGGTGGCTACATGGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTATCCTTCCTGGTTCCATaGGGGAAGGTGATGATGGTT +
Preference number: 5 (lower is better)
Translates to: KMVVATWSLSLQFLDVSLSFLVP*GKVMMV
Trigger: AACCATCATCACCTTCCCCAATGGAACCAGGAAGGA...TAAAGAGACATCCAAAAATTGTAAAGAAAGAGACCATGTAGCCACCACCATCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp GTTTTGGTCAAAACTATATTTGGAGATTGGAGCCTACTGCCTGGCCTTGAGTCTAATTTTTCAGTCCACTaGTTAGGAAACTGCACCACT +
Preference number: 5 (lower is better)
Translates to: VLVKTIFGDWSLLPGLESNFSVH*LGNCTT
Trigger: AGTGGTGCAGTTTCCTAACAAGTGGACTGAAAAATT...AGACTCAAGGCCAGGCAGTAGGCTCCAATCTCCAAATATAGTTTTGACCAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp CTCTTTCTTTACAATTTTTGGATGTCTCTTTACTCCTCATGTGCAGGGGATCTCAATTTTTCAGTCCACTaGTTAGGAAACTGCACCACT +
Preference number: 5 (lower is better)
Translates to: LFLYNFWMSLYSSCAGDLNFSVH*LGNCTT
Trigger: AGTGGTGCAGTTTCCTAACAAGTGGACTGAAAAATT...GAGATCCCCTGCACATGAGGAGTAAAGAGACATCCAAAAATTGTAAAGAAAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS-3UTR CAA 90 bp AAGATGGTGGTGGCTACATGGTCTCTTTCTTTACAATTTTTGGATGTCTCTTTAAATTTTTCAGTCCACTaGTTAGGAAACTGCACCACT +
Preference number: 5 (lower is better)
Translates to: KMVVATWSLSLQFLDVSLNFSVH*LGNCTT
Trigger: AGTGGTGCAGTTTCCTAACAAGTGGACTGAAAAATT...TAAAGAGACATCCAAAAATTGTAAAGAAAGAGACCATGTAGCCACCACCATCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000138222.8
CDS CCA 72 bp CTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTTGGTaGCCTCCGCATCCTGCTTCTTCAAGGTCTTCAGCT +
Preference number: 6 (lower is better)
Translates to: LLPGWASLYRLW*PPHPASSRSSA
Trigger: AGCTGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 72 bp TGTACACTGGCAGAGTGTTGCTTGCTCTTGCCGGGGTaGGCGAGCCTATACAGGCTTTGGTGGCCTCCGCAT +
Preference number: 6 (lower is better)
Translates to: CTLAECCLLLPG*ASLYRLWWPPH
Trigger: ATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACACTCTGCCAGTGTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 72 bp CTTGCTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTaGGTGGCCTCCGCATCCTGCTTCTTCAAGGTCTTC +
Preference number: 6 (lower is better)
Translates to: LALAGVGEPIQA*VASASCFFKVF
Trigger: GAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 90 bp AGAGTGTTGCTTGCTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTaGGTGGCCTCCGCATCCTGCTTCTTCAAGGTCTTCAGCTCCGCA +
Preference number: 6 (lower is better)
Translates to: RVLLALAGVGEPIQA*VASASCFFKVFSSA
Trigger: TGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACACTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 72 bp TTGCTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTTaGTGGCCTCCGCATCCTGCTTCTTCAAGGTCTTCA +
Preference number: 6 (lower is better)
Translates to: LLLPGWASLYRL*WPPHPASSRSS
Trigger: TGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 72 bp CGGATCTCCTGGTTCTCCTTTATCAGAGCATCGATCTaGCTTTGGAGGTGCTGCTTCTTGGCCTGGCTTACC +
Preference number: 6 (lower is better)
Translates to: RISWFSFIRASI*LWRCCFLAWLT
Trigger: GGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGATCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS CAA 72 bp TGCTTCTTGGCCTGGCTTACCACAACCTCATCAAGCTaGCTGTCTTCCTCAGTGATCTGGGCTGTGCTCTCC +
Preference number: 6 (lower is better)
Translates to: CFLAWLTTTSSS*LSSSVIWAVLS
Trigger: GGAGAGCACAGCCCAGATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS CAA 90 bp CGCACGGATCTCCTGGTTCTCCTTTATCAGAGCATCGATCTGGCTTaGGAGGTGCTGCTTCTTGGCCTGGCTTACCACAACCTCATCAAG +
Preference number: 6 (lower is better)
Translates to: RTDLLVLLYQSIDLA*EVLLLGLAYHNLIK
Trigger: CTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAACCAGGAGATCCGTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS GCA 72 bp TCCCTCTATCTTTATGTACACTGGCAGAGTGTTGCTTaGTCTTGCCGGGGTGGGCGAGCCTATACAGGCTTT +
Preference number: 6 (lower is better)
Translates to: SLYLYVHWQSVA*SCRGGRAYTGF
Trigger: AAAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACACTCTGCCAGTGTACATAAAGATAGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 72 bp TTCCCTCTATCTTTATGTACACTGGCAGAGTGTTGCTaGCTCTTGCCGGGGTGGGCGAGCCTATACAGGCTT +
Preference number: 6 (lower is better)
Translates to: FPLSLCTLAECC*LLPGWASLYRL
Trigger: AAGCCTGTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACACTCTGCCAGTGTACATAAAGATAGAGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 72 bp ATCAGAGCATCGATCTGGCTTTGGAGGTGCTGCTTCTaGGCCTGGCTTACCACAACCTCATCAAGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: IRASIWLWRCCF*AWLTTTSSSLL
Trigger: CAGCAAGCTTGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS TCA 72 bp GCATTTGGGGAAAAACAAGGGATGACCCTGCTTGCTTaGGCATGCAGGAGAAGTTCACCGTCCGAAGTCTCT +
Preference number: 6 (lower is better)
Translates to: AFGEKQGMTLLA*ACRRSSPSEVS
Trigger: AGAGACTTCGGACGGTGAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATCCCTTGTTTTTCCCCAAATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS TCA 72 bp TCTGCACCCACAGTGCATTTGGGGAAAAACAAGGGATaGCCCTGCTTGCTTGAGCATGCAGGAGAAGTTCAC +
Preference number: 6 (lower is better)
Translates to: SAPTVHLGKNKG*PCLLEHAGEVH
Trigger: GTGAACTTCTCCTGCATGCTCAAGCAAGCAGGGTCATCCCTTGTTTTTCCCCAAATGCACTGTGGGTGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 72 bp GCATTTCATCCTGGGAGTCTGTTCCTCCGGTGGCCATaGTGCTTCTGTTTGGAGGACTTCCAGAAAGCTCAT +
Preference number: 6 (lower is better)
Translates to: AFHPGSLFLRWP*CFCLEDFQKAH
Trigger: ATGAGCTTTCTGGAAGTCCTCCAAACAGAAGCACAATGGCCACCGGAGGAACAGACTCCCAGGATGAAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS GCA 72 bp TTCTCCTTTATCAGAGCATCGATCTGGCTTTGGAGGTaGTGCTTCTTGGCCTGGCTTACCACAACCTCATCA +
Preference number: 6 (lower is better)
Translates to: FSFIRASIWLWR*CFLAWLTTTSS
Trigger: TGATGAGGTTGTGGTAAGCCAGGCCAAGAAGCAGCACCTCCAAAGCCAGATCGATGCTCTGATAAAGGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138222.8
CDS CCA 72 bp ACAACCTCATCAAGCTTGCTGTCTTCCTCAGTGATCTaGGCTGTGCTCTCCATCTTCCTCTTCTCATGGTTG +
Preference number: 6 (lower is better)
Translates to: TTSSSLLSSSVI*AVLSIFLFSWL
Trigger: CAACCATGAGAAGAGGAAGATGGAGAGCACAGCCCAGATCACTGAGGAAGACAGCAAGCTTGATGAGGTTGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 72 bp AAGACAGCATTTCATCCTGGGAGTCTGTTCCTCCGGTaGCCATTGTGCTTCTGTTTGGAGGACTTCCAGAAA +
Preference number: 6 (lower is better)
Translates to: KTAFHPGSLFLR*PLCFCLEDFQK
Trigger: TTTCTGGAAGTCCTCCAAACAGAAGCACAATGGCCACCGGAGGAACAGACTCCCAGGATGAAATGCTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 72 bp GTCGCTGAGCATCCGCTCCACCTTGCCATTTGGGTGTaGCTTTTCCTTTGTCTCATCAGTCTTTGTAGTGTC +
Preference number: 6 (lower is better)
Translates to: VAEHPLHLAIWV*LFLCLISLCSV
Trigger: GACACTACAAAGACTGATGAGACAAAGGAAAAGCAACACCCAAATGGCAAGGTGGAGCGGATGCTCAGCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
CDS TCA 72 bp TGGAGGACTTCCAGAAAGCTCATCTCTTTCATCCCATaGGGTTGTCCTCTCGGAATCAGTTCCCTCTATCTT +
Preference number: 6 (lower is better)
Translates to: WRTSRKLISFIP*GCPLGISSLYL
Trigger: AAGATAGAGGGAACTGATTCCGAGAGGACAACCTCATGGGATGAAAGAGATGAGCTTTCTGGAAGTCCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS TCA 72 bp TGTGTCCAGGAATGTGCTGTCAGACAGTGGTTCTGGTaGCATTCTGCCCAAGCTTCTTTGCAGAAATTTGGA +
Preference number: 6 (lower is better)
Translates to: CVQECAVRQWFW*HSAQASLQKFG
Trigger: TCCAAATTTCTGCAAAGAAGCTTGGGCAGAATGTCACCAGAACCACTGTCTGACAGCACATTCCTGGACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CCA 72 bp TTTTCATCCACAGATGTAAAAGACAGCATTTCATCCTaGGAGTCTGTTCCTCCGGTGGCCATTGTGCTTCTG +
Preference number: 6 (lower is better)
Translates to: FSSTDVKDSISS*ESVPPVAIVLL
Trigger: CAGAAGCACAATGGCCACCGGAGGAACAGACTCCCAGGATGAAATGCTGTCTTTTACATCTGTGGATGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS GCA 72 bp ATTTCTTTAGGAGCTCTTGACTTTGTTGGAATATTCTaGACCCACAGTGCATTTGGGGAAAAACAAGGGATG +
Preference number: 6 (lower is better)
Translates to: ISLGALDFVGIF*THSAFGEKQGM
Trigger: CATCCCTTGTTTTTCCCCAAATGCACTGTGGGTGCAGAATATTCCAACAAAGTCAAGAGCTCCTAAAGAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS GCA 72 bp TCCTTTGTCTCATCAGTCTTTGTAGTGTCCGAGGTTTaGTGTATTTCTTTAGGAGCTCTTGACTTTGTTGGA +
Preference number: 6 (lower is better)
Translates to: SFVSSVFVVSEV*CISLGALDFVG
Trigger: TCCAACAAAGTCAAGAGCTCCTAAAGAAATACAGCAAACCTCGGACACTACAAAGACTGATGAGACAAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
CDS CAA 90 bp GACAGTGGTTCTGGTGACATTCTGCCCAAGCTTCTTTGCAGAAATTaGGAAGACATGTGTATAACCTTTTCATCCACAGATGTAAAAGAC +
Preference number: 6 (lower is better)
Translates to: DSGSGDILPKLLCRN*EDMCITFSSTDVKD
Trigger: GTCTTTTACATCTGTGGATGAAAAGGTTATACACATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGAATGTCACCAGAACCACTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2
CDS CAA 72 bp TCTGGTGACATTCTGCCCAAGCTTCTTTGCAGAAATTaGGAAGACATGTGTATAACCTTTTCATCCACAGAT +
Preference number: 6 (lower is better)
Translates to: SGDILPKLLCRN*EDMCITFSSTD
Trigger: ATCTGTGGATGAAAAGGTTATACACATGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGAATGTCACCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000095726.11
ENSMUST00000128533.8
ENSMUST00000129709.8
ENSMUST00000138222.8
ENSMUST00000140192.8
ENSMUST00000144861.2