Pregenerated sensors for TCP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068039Ensembl transcript IDs: ENSMUST00000089024.13, ENSMUST00000151287.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACACCCTGGAGAGAGTGGGCGGGACCCGTGGTGTTGCAGCCCTGTaGATTGGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAGAGGG | + |
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Preference number: 1 (lower is better) Translates to: HTLERVGGTRGVAAL*IGGGMGVAMCVQRG Trigger: CCCTCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACTCTCTCCAGGGTGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR GCA 90 bp | GACCTTGCTGCACACCCTGGAGAGAGTGGGCGGGACCCGTGGTGTTaGAGCCCTGTGCATTGGGGGTGGGATGGGAGTCGCAATGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: DLAAHPGESGRDPWC*SPVHWGWDGSRNVC Trigger: ACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACTCTCTCCAGGGTGTGCAGCAAGGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR CCA 90 bp | CCTGGAGAGAGTGGGCGGGACCCGTGGTGTTGCAGCCCTGTGCATTaGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAGAGGGTGAAC | + |
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Preference number: 1 (lower is better) Translates to: PGESGRDPWCCSPVH*GWDGSRNVCSERVN Trigger: GTTCACCCTCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACTCTCTCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR CCA 90 bp | TCTAGTGACCTTGCTGCACACCCTGGAGAGAGTGGGCGGGACCCGTaGTGTTGCAGCCCTGTGCATTGGGGGTGGGATGGGAGTCGCAAT | + |
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Preference number: 1 (lower is better) Translates to: SSDLAAHPGESGRDP*CCSPVHWGWDGSRN Trigger: ATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACTCTCTCCAGGGTGTGCAGCAAGGTCACTAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR CCA 90 bp | GAGAGTGGGCGGGACCCGTGGTGTTGCAGCCCTGTGCATTGGGGGTaGGATGGGAGTCGCAATGTGTGTTCAGAGAGGGTGAACTGCATG | + |
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Preference number: 1 (lower is better) Translates to: ESGRDPWCCSPVHWG*DGSRNVCSERVNCM Trigger: CATGCAGTTCACCCTCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACTCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR GCA 90 bp | CCACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTCGGGACCCGTGGTGTTaGAGCCCTGTGCATTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: PRRPEPHRETQEVSHRPIRDPWC*SPVHWG Trigger: CCCCCAATGCACAGGGCTGCAACACCACGGGTCCCG...AATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CCA 90 bp | CCACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTACACCCTGGAGAGAGTaGGCGGGACCCGTGGTGTTG | + |
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Preference number: 2 (lower is better) Translates to: PRRPEPHRETQEVSHRPITPWRE*AGPVVL Trigger: CAACACCACGGGTCCCGCCCACTCTCTCCAGGGTGT...AATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CCA 90 bp | CACTGCGGGGAGACATATAAAACAGTCAGTTCACAGAGGACTGACTTAGGCTCTTGCAGCCCTGTGCATTaGGGGTGGGATGGGAGTCGC | + |
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Preference number: 2 (lower is better) Translates to: HCGETYKTVSSQRTDLGSCSPVH*GWDGSR Trigger: GCGACTCCCATCCCACCCCCAATGCACAGGGCTGCA...AGAGCCTAAGTCAGTCCTCTGTGAACTGACTGTTTTATATGTCTCCCCGCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CCA 90 bp | CCACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTGGACAGGAACCCAGGTaGTCAGCTTGCTGTACTTTA | + |
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Preference number: 2 (lower is better) Translates to: PRRPEPHRETQEVSHRPIGQEPR*SACCTL Trigger: TAAAGTACAGCAAGCTGACCACCTGGGTTCCTGTCC...AATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR GCA 90 bp | GTTGCAGCCCTGTGCATTGGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAGATTCTTGTTAAATCAGTaGAACACTAAGCAGAAAGGG | + |
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Preference number: 2 (lower is better) Translates to: VAALCIGGGMGVAMCVQRFLLNQ*NTKQKG Trigger: CCCTTTCTGCTTAGTGTTGCACTGATTTAACAAGAA...TCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CCA 90 bp | CACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTTTTGAGTTTGAAAGGATaGTTTGCTAGCATAACACTG | + |
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Preference number: 2 (lower is better) Translates to: HEGQSHTEKPRRCHIGLFLSLKG*FASITL Trigger: CAGTGTTATGCTAGCAAACCATCCTTTCAAACTCAA...AAATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CCA 90 bp | CACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTTATTCCTAAGGTTTACATAGGTCAACATCAATaGAGGAGCCATTGCCTTGGG | + |
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Preference number: 2 (lower is better) Translates to: HTEKPRRCHIGLFIPKVYIGQHQ*RSHCLG Trigger: CCCAAGGCAATGGCTCCTCCATTGATGTTGACCTAT...GTAAACCTTAGGAATAAATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR CCA 72 bp | AGTGGGCGGGACCCGTGGTGTTGCAGCCCTGTGCATTaGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: SGRDPWCCSPVH*GWDGSRNVCSE Trigger: CTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR GCA 72 bp | GCCATTGCCTTGGGCCATCCTCTGGGAGCATCTGGCTaGAGGATTCTAGTGACCTTGCTGCACACCCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: AIALGHPLGASG*RILVTLLHTLE Trigger: CTCCAGGGTGTGCAGCAAGGTCACTAGAATCCTGCAGCCAGATGCTCCCAGAGGATGGCCCAAGGCAATGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CAA 90 bp | GAAGGCCAGAGCCACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTTATTTTGCAGCCCTGTGCATaGGGGGTGGGATGGGAGTCG | + |
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Preference number: 3 (lower is better) Translates to: EGQSHTEKPRRCHIGLFILQPCA*GVGWES Trigger: CGACTCCCATCCCACCCCCAATGCACAGGGCTGCAA...AATAAATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR-3UTR CAA 90 bp | TGGGATGGGAGTCGCAATGTGTGTTCAGAGAGGGTGAACTGCATGACAGCCACCACCCAGGTGGTCAGCTaGCTGTACTTTAATGTGAGA | + |
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Preference number: 3 (lower is better) Translates to: WDGSRNVCSERVNCMTATTQVVS*LYFNVR Trigger: TCTCACATTAAAGTACAGCAAGCTGACCACCTGGGT...GGTGGCTGTCATGCAGTTCACCCTCTCTGAACACACATTGCGACTCCCATCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR GCA 72 bp | GACAGCCACCACCTTGGACAGTTCTTGTTAAATCAGTaGAACACTAAGCAGAAAGGGAAACCAGAGGACCAA | + |
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Preference number: 3 (lower is better) Translates to: DSHHLGQFLLNQ*NTKQKGKPEDQ Trigger: TTGGTCCTCTGGTTTCCCTTTCTGCTTAGTGTTGCACTGATTTAACAAGAACTGTCCAAGGTGGTGGCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| 3UTR CAA 72 bp | CCTCTGGGAGCATCTGGCTGCAGGATTCTAGTGACCTaGCTGCACACCCTGGAGAGAGTGGGCGGGACCCGT | + |
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Preference number: 4 (lower is better) Translates to: PLGASGCRILVT*LHTLERVGGTR Trigger: ACGGGTCCCGCCCACTCTCTCCAGGGTGTGCAGCAAGGTCACTAGAATCCTGCAGCCAGATGCTCCCAGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR CCA 90 bp | GGTCTACAGAGTGAGTTCCACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGAGGTCGGTGGAGTCCTaGGCAGCATTCACTGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: GLQSEFHEGQSHTEKPRRRSVES*AAFTAS Trigger: ACTGGCAGTGAATGCTGCCCAGGACTCCACCGACCT...CCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTGGAACTCACTCTGTAGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR CCA 90 bp | CACTGCGGGGAGACATATAAAACAGTCAGTTCACAGAGGACTGACTTAGGCTCTGCAGCCATAACATTCTaGGAGCGGACCGCCTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: HCGETYKTVSSQRTDLGSAAITF*ERTASP Trigger: TGGGGAGGCGGTCCGCTCCCAGAATGTTATGGCTGC...AGAGCCTAAGTCAGTCCTCTGTGAACTGACTGTTTTATATGTCTCCCCGCAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | GTCTACAGAGTGAGTTCCACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGTTGCTCCAGAAGCTTTTaGAACATGCTTCAGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: VYRVSSTKARATQRNPGGCSRSF*NMLQVS Trigger: CGAGACCTGAAGCATGTTGCAAAAGCTTCTGGAGCA...ACCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTGGAACTCACTCTGTAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | GTTGCAGCCCTGTGCATTGGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAGAGTTCCCGAGATCCCATaGTTGTTGCATAGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VAALCIGGGMGVAMCVQRVPEIP*LLHSFP Trigger: TGGAAAACTATGCAACAAGCATGGGATCTCGGGAAC...TCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | GGTCTACAGAGTGAGTTCCACGAAGGCCAGAGCCACACAGAGAAACCCAGGAGGGTTGGCAATAGAAGCTaGAGCCATAACATTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: GLQSEFHEGQSHTEKPRRVGNRS*SHNILG Trigger: TCCCAGAATGTTATGGCTGCAGCTTCTATTGCCAAC...CCTCCTGGGTTTCTCTGTGTGGCTCTGGCCTTCGTGGAACTCACTCTGTAGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR CCA 90 bp | GTTGCAGCCCTGTGCATTGGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAGAAGTTTTCCAGGTATATaGACAGGGCAGCTTCTACAG | + |
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Preference number: 4 (lower is better) Translates to: VAALCIGGGMGVAMCVQRSFPGI*TGQLLQ Trigger: CTGTAGAAGCTGCCCTGTCCATATACCTGGAAAACT...TCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR TCA 90 bp | TGCAGCCCTGTGCATTGGGGGTGGGATGGGAGTCGCAATGTGTGTTCAGAGAGGTCCAATAATTTTGGATaGCATGGATGTCTTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: CSPVHWGWDGSRNVCSERSNNFG*HGCLSS Trigger: GCTGCTAAGACATCCATGTCATCCAAAATTATTGGA...CCTCTCTGAACACACATTGCGACTCCCATCCCACCCCCAATGCACAGGGCTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | GATTCTAGTGACCTTGCTGCACACCCTGGAGAGAGTGGGCGGGACCCGTGGTGTAGATCCCATGCTTGTTaGATAGTTTTCCAGGTATAT | + |
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Preference number: 4 (lower is better) Translates to: DSSDLAAHPGESGRDPWCRSHAC*IVFQVY Trigger: ATATACCTGGAAAACTATGCAACAAGCATGGGATCT...ACACCACGGGTCCCGCCCACTCTCTCCAGGGTGTGCAGCAAGGTCACTAGAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR CCA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCAGGTCGGTGGAGTCCTaGGCAGCATTCACTGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: DTQGYGIAPDTVINKREIRSVES*AAFTAS Trigger: ACTGGCAGTGAATGCTGCCCAGGACTCCACCGACCT...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR TCA 90 bp | CAGCCTGGTCTACAGAGTGAGTTCCACGAAGGCCAGAGCCACACAGAGAAACCCTTGTTTTCTGCAGGCTaGAGTCAAGACAAGCAATTT | + |
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Preference number: 4 (lower is better) Translates to: QPGLQSEFHEGQSHTEKPLFSAG*SQDKQF Trigger: AAATTGCTTGTCTTGACTTCAGCCTGCAGAAAACAA...GGGTTTCTCTGTGTGGCTCTGGCCTTCGTGGAACTCACTCTGTAGACCAGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR TCA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCAATCCGAAGGATGGTaGTTGCAGCCTCTGTTGCGA | + |
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Preference number: 4 (lower is better) Translates to: DTQGYGIAPDTVINKREIQSEGW*LQPLLR Trigger: TCGCAACAGAGGCTGCAATCACCATCCTTCGGATTG...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCTGCTCCAGAAGCTTTTaGAACATGCTTCAGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: DTQGYGIAPDTVINKREICSRSF*NMLQVS Trigger: CGAGACCTGAAGCATGTTGCAAAAGCTTCTGGAGCA...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCGTAGACAGGATACTTaGTCCAGAAGCTTTTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: DTQGYGIAPDTVINKREIRRQDT*SRSFCN Trigger: GTTGCAAAAGCTTCTGGAGCAAGTATCCTGTCTACG...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR CCA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCAGTTTTCCAGGTATATaGACAGGGCAGCTTCTACAG | + |
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Preference number: 4 (lower is better) Translates to: DTQGYGIAPDTVINKREISFPGI*TGQLLQ Trigger: CTGTAGAAGCTGCCCTGTCCATATACCTGGAAAACT...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | ACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCAAGTTCCCGAGATCCCATaGTTGTTGCATAGTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: TQGYGIAPDTVINKREIQVPEIP*LLHSFP Trigger: TGGAAAACTATGCAACAAGCATGGGATCTCGGGAAC...TTGGATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR CCA 90 bp | ACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCAATTGCTTGTTGTCTCGTaGTTTCCCATGGACCAAATC | + |
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Preference number: 4 (lower is better) Translates to: TQGYGIAPDTVINKREIQLLVVS*FPMDQI Trigger: GATTTGGTCCATGGGAAACCACGAGACAACAAGCAA...TTGGATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR TCA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCTTGTTTTCTGCAGGCTaGAGTCAAGACAAGCAATTT | + |
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Preference number: 4 (lower is better) Translates to: DTQGYGIAPDTVINKREILFSAG*SQDKQF Trigger: AAATTGCTTGTCTTGACTTCAGCCTGCAGAAAACAA...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR TCA 90 bp | ACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCAATCCAATAATTTTGGATaGCATGGATGTCTTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TQGYGIAPDTVINKREIQSNNFG*HGCLSS Trigger: GCTGCTAAGACATCCATGTCATCCAAAATTATTGGA...TTGGATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | ACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCAAGAAGCTTTTGCAACATaGTTCAGGTCTCGTTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: TQGYGIAPDTVINKREIQEAFAT*FRSRFK Trigger: TTTAAAACGAGACCTGAAGCATGTTGCAAAAGCTTC...TTGGATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | CACACAGAGAAACCCAGGAGGTGTCACATAGGCCTATTTATTCCTAAGGTTTACGAAGCTTTTGCAACATaGTTCAGGTCTCGTTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: HTEKPRRCHIGLFIPKVYEAFAT*FRSRFK Trigger: TTTAAAACGAGACCTGAAGCATGTTGCAAAAGCTTC...GTAAACCTTAGGAATAAATAGGCCTATGTGACACCTCCTGGGTTTCTCTGTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR GCA 90 bp | ACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCAAAGATCCCATGCTTGTTaGATAGTTTTCCAGGTATAT | + |
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Preference number: 4 (lower is better) Translates to: TQGYGIAPDTVINKREIQRSHAC*IVFQVY Trigger: ATATACCTGGAAAACTATGCAACAAGCATGGGATCT...TTGGATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR CAA 90 bp | CTGGAGAGAGTGGGCGGGACCCGTGGTGTTGCAGCCCTGTGCATTGGGGGTGGGTTGCTCCAGAAGCTTTaGCAACATGCTTCAGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: LERVGGTRGVAALCIGGGLLQKL*QHASGL Trigger: GAGACCTGAAGCATGTTGCAAAAGCTTCTGGAGCAA...CCCACCCCCAATGCACAGGGCTGCAACACCACGGGTCCCGCCCACTCTCTCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR CAA 90 bp | TGGGATGGGAGTCGCAATGTGTGTTCAGAGAGGGTGAACTGCATGACAGCCACCACGTTCCGGGTTCACTaGAGCCTCATTGTGAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: WDGSRNVCSERVNCMTATTFRVH*SLIVKS Trigger: GCTTTTCACAATGAGGCTCAAGTGAACCCGGAACGT...GGTGGCTGTCATGCAGTTCACCCTCTCTGAACACACATTGCGACTCCCATCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151287.8 |
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| CDS-3UTR CAA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCACGTTCCGGGTTCACTaGAGCCTCATTGTGAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: DTQGYGIAPDTVINKREITFRVH*SLIVKS Trigger: GCTTTTCACAATGAGGCTCAAGTGAACCCGGAACGT...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR CAA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCTTGCTCCAGAAGCTTTaGCAACATGCTTCAGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: DTQGYGIAPDTVINKREILLQKL*QHASGL Trigger: GAGACCTGAAGCATGTTGCAAAAGCTTCTGGAGCAA...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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| CDS-3UTR CAA 90 bp | GACACCCAAGGCTACGGCATTGCACCTGACACTGTTATAAATAAGAGGGAAATCCCGTGTTTATCGTCTTaGCTTTCTGGGTGTAATTTT | + |
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Preference number: 5 (lower is better) Translates to: DTQGYGIAPDTVINKREIPCLSS*LSGCNF Trigger: AAAATTACACCCAGAAAGCAAAGACGATAAACACGG...GATTTCCCTCTTATTTATAACAGTGTCAGGTGCAATGCCGTAGCCTTGGGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089024.13 ENSMUST00000151287.8 |
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