RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TCL1B5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000701

Ensembl transcript IDs: ENSMUST00000000717.9

Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGTGTGGTAGAACTAGAAACTTGAGGAACAAGCAGAGGGTTGGGTaGAAAGTCTACCCCGAGGGCACAGGGGCAGGAGCCAGCCAGGCT +
Preference number: 1 (lower is better)
Translates to: RCGRTRNLRNKQRVG*KVYPEGTGAGASQA
Trigger: AGCCTGGCTGGCTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACCACACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR CCA 90 bp GGCCTAGGGTCAGATTCACTTCCTGGAGCCAAGGAACTGAGCACCTaGACAAGTACTCCAGATATTCTCTGTAAGTCTCCCACTGTGCCT +
Preference number: 1 (lower is better)
Translates to: GLGSDSLPGAKELST*TSTPDILCKSPTVP
Trigger: AGGCACAGTGGGAGACTTACAGAGAATATCTGGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGACCCTAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR TCA 90 bp ACTCCAGATATTCTCTGTAAGTCTCCCACTGTGCCTTCAAGCTACTaGGCACGTAGTGTCCTCTACCCAGCACCAGTCGAACTTCTTGCC +
Preference number: 1 (lower is better)
Translates to: TPDILCKSPTVPSSY*ARSVLYPAPVELLA
Trigger: GGCAAGAAGTTCGACTGGTGCTGGGTAGAGGACACTACGTGCTCAGTAGCTTGAAGGCACAGTGGGAGACTTACAGAGAATATCTGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR TCA 90 bp GTCTTAAGAAAAGCCATCTATAAGGTCAGTGTCAGAGGCACAAAGTaGGCAAGAGAAGATGCAGTTTGTCTCCAGCTAGGGAGAATGGTC +
Preference number: 1 (lower is better)
Translates to: VLRKAIYKVSVRGTK*AREDAVCLQLGRMV
Trigger: GACCATTCTCCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGACACTGACCTTATAGATGGCTTTTCTTAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR CAA 90 bp GCTACTGAGCACGTAGTGTCCTCTACCCAGCACCAGTCGAACTTCTaGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATC +
Preference number: 2 (lower is better)
Translates to: ATEHVVSSTQHQSNF*PVMAQRPTGHRVPI
Trigger: GATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGACACTACGTGCTCAGTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR-3UTR TCA 90 bp CACCAGTCGAACTTCTTGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCGTCAGAGGCACAAAGTaGGCAAGAGAAGATGCAGTT +
Preference number: 2 (lower is better)
Translates to: HQSNFLPVMAQRPTGHRVVRGTK*AREDAV
Trigger: AACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGAC...GACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR-3UTR GCA 90 bp ATCTGTACCTCCTCCAGAGGCACCTGTATACATCCTAAGGTAAATGGGGACAAAGTGAGCAAGAGAAGATaGAGTTTGTCTCCAGCTAGG +
Preference number: 2 (lower is better)
Translates to: ICTSSRGTCIHPKVNGDKVSKRR*SLSPAR
Trigger: CCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCAC...TTTGTCCCCATTTACCTTAGGATGTATACAGGTGCCTCTGGAGGAGGTACAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR CCA 72 bp TGGGGTTGGGAGGGGCCTAGGGTCAGATTCACTTCCTaGAGCCAAGGAACTGAGCACCTGGACAAGTACTCC +
Preference number: 3 (lower is better)
Translates to: WGWEGPRVRFTS*SQGTEHLDKYS
Trigger: GGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGACCCTAGGCCCCTCCCAACCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR-3UTR CAA 90 bp TTGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCTCCCCCAGGTGGAGGAGTTaGAATGGAGGAGGGGTCTTA +
Preference number: 3 (lower is better)
Translates to: LPVMAQRPTGHRVPICTSPRWRS*NGGGVL
Trigger: TAAGACCCCTCCTCCATTCAAACTCCTCCACCTGGG...GGAGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR-3UTR CAA 90 bp TTGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCTCCGGTAGAACTAGAAACTaGAGGAACAAGCAGAGGGTT +
Preference number: 3 (lower is better)
Translates to: LPVMAQRPTGHRVPICTSGRTRN*RNKQRV
Trigger: AACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACC...GGAGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR CCA 72 bp TCAGATTCACTTCCTGGAGCCAAGGAACTGAGCACCTaGACAAGTACTCCAGATATTCTCTGTAAGTCTCCC +
Preference number: 3 (lower is better)
Translates to: SDSLPGAKELST*TSTPDILCKSP
Trigger: GGGAGACTTACAGAGAATATCTGGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR TCA 72 bp AAAGCCATCTATAAGGTCAGTGTCAGAGGCACAAAGTaGGCAAGAGAAGATGCAGTTTGTCTCCAGCTAGGG +
Preference number: 3 (lower is better)
Translates to: KAIYKVSVRGTK*AREDAVCLQLG
Trigger: CCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGACACTGACCTTATAGATGGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR CCA 90 bp AGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGCCAGCCCAGGAGGACTGGGAGTaGCCTCTGGGGATCAACAGA +
Preference number: 4 (lower is better)
Translates to: SRGLGAKSTPRAQGQEPAQEDWE*PLGINR
Trigger: TCTGTTGATCCCCAGAGGCCACTCCCAGTCCTCCTG...GGCTGGCTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR CCA 90 bp GTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCTCCTCCAGATGGGGAGTAGGCTCCTaGGGGAGTGTGGTCATATGC +
Preference number: 4 (lower is better)
Translates to: VMAQRPTGHRVPICTSSRWGVGS*GSVVIC
Trigger: GCATATGACCACACTCCCCCAGGAGCCTACTCCCCA...TCTGGAGGAGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR CCA 90 bp GGAACAAGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGCCGTGTATGTGTTCCTaGACTCTAATCTCCACATCG +
Preference number: 4 (lower is better)
Translates to: GTSRGLGAKSTPRAQGQEPCMCS*TLISTS
Trigger: CGATGTGGAGATTAGAGTCCAGGAACACATACACGG...CTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR CAA 72 bp CACGTAGTGTCCTCTACCCAGCACCAGTCGAACTTCTaGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGA +
Preference number: 4 (lower is better)
Translates to: HVVSSTQHQSNF*PVMAQRPTGHR
Trigger: TCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGACACTACGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR GCA 90 bp GGAACAAGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGGTCATATGCTGCAAGTaGACAGTTACACATGTTTCA +
Preference number: 4 (lower is better)
Translates to: GTSRGLGAKSTPRAQGQEVICCK*TVTHVS
Trigger: TGAAACATGTGTAACTGTGCACTTGCAGCATATGAC...CTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR TCA 90 bp CCACACAAGGCACTAGAAGCCCAGGTGGAGGAGTTTGAATGGAGGAGGGGTCTTTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTAT +
Preference number: 4 (lower is better)
Translates to: PHKALEAQVEEFEWRRGLSPIWE*SSNLQY
Trigger: ATACTGGAGATTACTGGATCATTCCCAGATGGGCGA...AAGACCCCTCCTCCATTCAAACTCCTCCACCTGGGCTTCTAGTGCCTTGTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR GCA 90 bp GGCAGGAGGTGTGGTAGAACTAGAAACTTGAGGAACAAGCAGAGGGTTGGGTGCGGGAGTGTGGTCATATaGTGCAAGTGCACAGTTACA +
Preference number: 4 (lower is better)
Translates to: GRRCGRTRNLRNKQRVGCGSVVI*CKCTVT
Trigger: TGTAACTGTGCACTTGCAGCATATGACCACACTCCC...GCACCCAACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACCACACCTCCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR GCA 90 bp CCACACAAGGCACTAGAAGCCCAGGTGGAGGAGTTTGAATGGAGGAGGGGTCTTAGTGTGGTCATATGCTaGAAGTGCACAGTTACACAT +
Preference number: 4 (lower is better)
Translates to: PHKALEAQVEEFEWRRGLSVVIC*KCTVTH
Trigger: ATGTGTAACTGTGCACTTGCAGCATATGACCACACT...AAGACCCCTCCTCCATTCAAACTCCTCCACCTGGGCTTCTAGTGCCTTGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR CCA 90 bp TGGACAAGTACTCCAGATATTCTCTGTAAGTCTCCCACTGTGCCTTCAAGCTACACTGGGAGTGGCCTCTaGGGATCAACAGACACAGCA +
Preference number: 4 (lower is better)
Translates to: WTSTPDILCKSPTVPSSYTGSGL*GSTDTA
Trigger: TGCTGTGTCTGTTGATCCCCAGAGGCCACTCCCAGT...GTAGCTTGAAGGCACAGTGGGAGACTTACAGAGAATATCTGGAGTACTTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
3UTR CAA 72 bp TCTAGTCATGGCAGGAGGTGTGGTAGAACTAGAAACTaGAGGAACAAGCAGAGGGTTGGGTGCAAAGTCTAC +
Preference number: 4 (lower is better)
Translates to: SSHGRRCGRTRN*RNKQRVGCKVY
Trigger: GTAGACTTTGCACCCAACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACCACACCTCCTGCCATGACTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR GCA 90 bp ATAAGGTCAGTGTCAGAGGCACAAAGTGAGCAAGAGAAGATGCAGTTTGTCTCCATGTTTCAATCCTGTTaGCATGTGATGAATGAGAAG +
Preference number: 4 (lower is better)
Translates to: IRSVSEAQSEQEKMQFVSMFQSC*HVMNEK
Trigger: CTTCTCATTCATCACATGGCAACAGGATTGAAACAT...GGAGACAAACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGACACTGACCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS-3UTR CAA 90 bp GGAACAAGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGATCGTGGGGAGAGAGTaGTTATTAATGGGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: GTSRGLGAKSTPRAQGQEIVGRE*LLMGCW
Trigger: CCAGCAGCCCATTAATAACAACTCTCTCCCCACGAT...CTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS CCA 90 bp TCTAATCTCCACATCGTGGGGAGAGAGTTGTTATTAATGGGCTGCTaGGGAGTAGGCTCCTGGGGGAGTGTGGTCATATGCTGCAAGTGC +
Preference number: 5 (lower is better)
Translates to: SNLHIVGRELLLMGC*GVGSWGSVVICCKC
Trigger: GCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTGGAGATTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS TCA 90 bp ATTATTATGTCCAGGGTCAGTTGCACTGTGTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTATGTCCCATCTGTTCCCGTGTATGTG +
Preference number: 5 (lower is better)
Translates to: IIMSRVSCTVSPIWE*SSNLQYVPSVPVYV
Trigger: CACATACACGGGAACAGATGGGACATACTGGAGATTACTGGATCATTCCCAGATGGGCGACACAGTGCAACTGACCCTGGACATAATAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS GCA 90 bp TGGTCATATGCTGCAAGTGCACAGTTACACATGTTTCAATCCTGTTaGCATGTGATGAATGAGAAGTTTCCACGTTTACAGCTATCCACA +
Preference number: 5 (lower is better)
Translates to: WSYAASAQLHMFQSC*HVMNEKFPRLQLST
Trigger: TGTGGATAGCTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS CCA 72 bp CACATCGTGGGGAGAGAGTTGTTATTAATGGGCTGCTaGGGAGTAGGCTCCTGGGGGAGTGTGGTCATATGC +
Preference number: 6 (lower is better)
Translates to: HIVGRELLLMGC*GVGSWGSVVIC
Trigger: GCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS TCA 72 bp TCCAGGGTCAGTTGCACTGTGTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTATGTCCCATCTGTTCCC +
Preference number: 6 (lower is better)
Translates to: SRVSCTVSPIWE*SSNLQYVPSVP
Trigger: GGGAACAGATGGGACATACTGGAGATTACTGGATCATTCCCAGATGGGCGACACAGTGCAACTGACCCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS CCA 72 bp GAGTTGTTATTAATGGGCTGCTGGGGAGTAGGCTCCTaGGGGAGTGTGGTCATATGCTGCAAGTGCACAGTT +
Preference number: 6 (lower is better)
Translates to: ELLLMGCWGVGS*GSVVICCKCTV
Trigger: AACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS CAA 72 bp TTCCTGGACTCTAATCTCCACATCGTGGGGAGAGAGTaGTTATTAATGGGCTGCTGGGGAGTAGGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: FLDSNLHIVGRE*LLMGCWGVGSW
Trigger: CCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS GCA 72 bp TGGGGAGTAGGCTCCTGGGGGAGTGTGGTCATATGCTaGAAGTGCACAGTTACACATGTTTCAATCCTGTTG +
Preference number: 6 (lower is better)
Translates to: WGVGSWGSVVIC*KCTVTHVSILL
Trigger: CAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS GCA 72 bp GTAGGCTCCTGGGGGAGTGTGGTCATATGCTGCAAGTaGACAGTTACACATGTTTCAATCCTGTTGCCATGT +
Preference number: 6 (lower is better)
Translates to: VGSWGSVVICCK*TVTHVSILLPC
Trigger: ACATGGCAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS CCA 72 bp TCCAGTATGTCCCATCTGTTCCCGTGTATGTGTTCCTaGACTCTAATCTCCACATCGTGGGGAGAGAGTTGT +
Preference number: 6 (lower is better)
Translates to: SSMSHLFPCMCS*TLISTSWGESC
Trigger: ACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCAGGAACACATACACGGGAACAGATGGGACATACTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS GCA 72 bp GCTGCAAGTGCACAGTTACACATGTTTCAATCCTGTTaGCATGTGATGAATGAGAAGTTTCCACGTTTACAG +
Preference number: 6 (lower is better)
Translates to: AASAQLHMFQSC*HVMNEKFPRLQ
Trigger: CTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9
CDS TCA 72 bp GTTACACATGTTTCAATCCTGTTGCCATGTGATGAATaGGAAGTTTCCACGTTTACAGCTATCCACACTCTA +
Preference number: 6 (lower is better)
Translates to: VTHVSILLPCDE*EVSTFTAIHTL
Trigger: TAGAGTGTGGATAGCTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAGGATTGAAACATGTGTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000717.9