Pregenerated sensors for TCL1B5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000701Ensembl transcript IDs: ENSMUST00000000717.9
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | AGGTGTGGTAGAACTAGAAACTTGAGGAACAAGCAGAGGGTTGGGTaGAAAGTCTACCCCGAGGGCACAGGGGCAGGAGCCAGCCAGGCT | + |
Preference number: 1 (lower is better) Translates to: RCGRTRNLRNKQRVG*KVYPEGTGAGASQA Trigger: AGCCTGGCTGGCTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACCACACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR CCA 90 bp | GGCCTAGGGTCAGATTCACTTCCTGGAGCCAAGGAACTGAGCACCTaGACAAGTACTCCAGATATTCTCTGTAAGTCTCCCACTGTGCCT | + |
Preference number: 1 (lower is better) Translates to: GLGSDSLPGAKELST*TSTPDILCKSPTVP Trigger: AGGCACAGTGGGAGACTTACAGAGAATATCTGGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGACCCTAGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR TCA 90 bp | ACTCCAGATATTCTCTGTAAGTCTCCCACTGTGCCTTCAAGCTACTaGGCACGTAGTGTCCTCTACCCAGCACCAGTCGAACTTCTTGCC | + |
Preference number: 1 (lower is better) Translates to: TPDILCKSPTVPSSY*ARSVLYPAPVELLA Trigger: GGCAAGAAGTTCGACTGGTGCTGGGTAGAGGACACTACGTGCTCAGTAGCTTGAAGGCACAGTGGGAGACTTACAGAGAATATCTGGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR TCA 90 bp | GTCTTAAGAAAAGCCATCTATAAGGTCAGTGTCAGAGGCACAAAGTaGGCAAGAGAAGATGCAGTTTGTCTCCAGCTAGGGAGAATGGTC | + |
Preference number: 1 (lower is better) Translates to: VLRKAIYKVSVRGTK*AREDAVCLQLGRMV Trigger: GACCATTCTCCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGACACTGACCTTATAGATGGCTTTTCTTAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR CAA 90 bp | GCTACTGAGCACGTAGTGTCCTCTACCCAGCACCAGTCGAACTTCTaGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATC | + |
Preference number: 2 (lower is better) Translates to: ATEHVVSSTQHQSNF*PVMAQRPTGHRVPI Trigger: GATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGACACTACGTGCTCAGTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR-3UTR TCA 90 bp | CACCAGTCGAACTTCTTGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCGTCAGAGGCACAAAGTaGGCAAGAGAAGATGCAGTT | + |
Preference number: 2 (lower is better) Translates to: HQSNFLPVMAQRPTGHRVVRGTK*AREDAV Trigger: AACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGAC...GACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR-3UTR GCA 90 bp | ATCTGTACCTCCTCCAGAGGCACCTGTATACATCCTAAGGTAAATGGGGACAAAGTGAGCAAGAGAAGATaGAGTTTGTCTCCAGCTAGG | + |
Preference number: 2 (lower is better) Translates to: ICTSSRGTCIHPKVNGDKVSKRR*SLSPAR Trigger: CCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCAC...TTTGTCCCCATTTACCTTAGGATGTATACAGGTGCCTCTGGAGGAGGTACAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR CCA 72 bp | TGGGGTTGGGAGGGGCCTAGGGTCAGATTCACTTCCTaGAGCCAAGGAACTGAGCACCTGGACAAGTACTCC | + |
Preference number: 3 (lower is better) Translates to: WGWEGPRVRFTS*SQGTEHLDKYS Trigger: GGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGACCCTAGGCCCCTCCCAACCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR-3UTR CAA 90 bp | TTGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCTCCCCCAGGTGGAGGAGTTaGAATGGAGGAGGGGTCTTA | + |
Preference number: 3 (lower is better) Translates to: LPVMAQRPTGHRVPICTSPRWRS*NGGGVL Trigger: TAAGACCCCTCCTCCATTCAAACTCCTCCACCTGGG...GGAGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR-3UTR CAA 90 bp | TTGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCTCCGGTAGAACTAGAAACTaGAGGAACAAGCAGAGGGTT | + |
Preference number: 3 (lower is better) Translates to: LPVMAQRPTGHRVPICTSGRTRN*RNKQRV Trigger: AACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACC...GGAGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR CCA 72 bp | TCAGATTCACTTCCTGGAGCCAAGGAACTGAGCACCTaGACAAGTACTCCAGATATTCTCTGTAAGTCTCCC | + |
Preference number: 3 (lower is better) Translates to: SDSLPGAKELST*TSTPDILCKSP Trigger: GGGAGACTTACAGAGAATATCTGGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR TCA 72 bp | AAAGCCATCTATAAGGTCAGTGTCAGAGGCACAAAGTaGGCAAGAGAAGATGCAGTTTGTCTCCAGCTAGGG | + |
Preference number: 3 (lower is better) Translates to: KAIYKVSVRGTK*AREDAVCLQLG Trigger: CCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGACACTGACCTTATAGATGGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR CCA 90 bp | AGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGCCAGCCCAGGAGGACTGGGAGTaGCCTCTGGGGATCAACAGA | + |
Preference number: 4 (lower is better) Translates to: SRGLGAKSTPRAQGQEPAQEDWE*PLGINR Trigger: TCTGTTGATCCCCAGAGGCCACTCCCAGTCCTCCTG...GGCTGGCTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR CCA 90 bp | GTGATGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCTCCTCCAGATGGGGAGTAGGCTCCTaGGGGAGTGTGGTCATATGC | + |
Preference number: 4 (lower is better) Translates to: VMAQRPTGHRVPICTSSRWGVGS*GSVVIC Trigger: GCATATGACCACACTCCCCCAGGAGCCTACTCCCCA...TCTGGAGGAGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR CCA 90 bp | GGAACAAGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGCCGTGTATGTGTTCCTaGACTCTAATCTCCACATCG | + |
Preference number: 4 (lower is better) Translates to: GTSRGLGAKSTPRAQGQEPCMCS*TLISTS Trigger: CGATGTGGAGATTAGAGTCCAGGAACACATACACGG...CTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR CAA 72 bp | CACGTAGTGTCCTCTACCCAGCACCAGTCGAACTTCTaGCCAGTGATGGCTCAGAGGCCCACAGGGCATAGA | + |
Preference number: 4 (lower is better) Translates to: HVVSSTQHQSNF*PVMAQRPTGHR Trigger: TCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGACACTACGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR GCA 90 bp | GGAACAAGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGGTCATATGCTGCAAGTaGACAGTTACACATGTTTCA | + |
Preference number: 4 (lower is better) Translates to: GTSRGLGAKSTPRAQGQEVICCK*TVTHVS Trigger: TGAAACATGTGTAACTGTGCACTTGCAGCATATGAC...CTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR TCA 90 bp | CCACACAAGGCACTAGAAGCCCAGGTGGAGGAGTTTGAATGGAGGAGGGGTCTTTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTAT | + |
Preference number: 4 (lower is better) Translates to: PHKALEAQVEEFEWRRGLSPIWE*SSNLQY Trigger: ATACTGGAGATTACTGGATCATTCCCAGATGGGCGA...AAGACCCCTCCTCCATTCAAACTCCTCCACCTGGGCTTCTAGTGCCTTGTGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR GCA 90 bp | GGCAGGAGGTGTGGTAGAACTAGAAACTTGAGGAACAAGCAGAGGGTTGGGTGCGGGAGTGTGGTCATATaGTGCAAGTGCACAGTTACA | + |
Preference number: 4 (lower is better) Translates to: GRRCGRTRNLRNKQRVGCGSVVI*CKCTVT Trigger: TGTAACTGTGCACTTGCAGCATATGACCACACTCCC...GCACCCAACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACCACACCTCCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR GCA 90 bp | CCACACAAGGCACTAGAAGCCCAGGTGGAGGAGTTTGAATGGAGGAGGGGTCTTAGTGTGGTCATATGCTaGAAGTGCACAGTTACACAT | + |
Preference number: 4 (lower is better) Translates to: PHKALEAQVEEFEWRRGLSVVIC*KCTVTH Trigger: ATGTGTAACTGTGCACTTGCAGCATATGACCACACT...AAGACCCCTCCTCCATTCAAACTCCTCCACCTGGGCTTCTAGTGCCTTGTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR CCA 90 bp | TGGACAAGTACTCCAGATATTCTCTGTAAGTCTCCCACTGTGCCTTCAAGCTACACTGGGAGTGGCCTCTaGGGATCAACAGACACAGCA | + |
Preference number: 4 (lower is better) Translates to: WTSTPDILCKSPTVPSSYTGSGL*GSTDTA Trigger: TGCTGTGTCTGTTGATCCCCAGAGGCCACTCCCAGT...GTAGCTTGAAGGCACAGTGGGAGACTTACAGAGAATATCTGGAGTACTTGTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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3UTR CAA 72 bp | TCTAGTCATGGCAGGAGGTGTGGTAGAACTAGAAACTaGAGGAACAAGCAGAGGGTTGGGTGCAAAGTCTAC | + |
Preference number: 4 (lower is better) Translates to: SSHGRRCGRTRN*RNKQRVGCKVY Trigger: GTAGACTTTGCACCCAACCCTCTGCTTGTTCCTCAAGTTTCTAGTTCTACCACACCTCCTGCCATGACTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR GCA 90 bp | ATAAGGTCAGTGTCAGAGGCACAAAGTGAGCAAGAGAAGATGCAGTTTGTCTCCATGTTTCAATCCTGTTaGCATGTGATGAATGAGAAG | + |
Preference number: 4 (lower is better) Translates to: IRSVSEAQSEQEKMQFVSMFQSC*HVMNEK Trigger: CTTCTCATTCATCACATGGCAACAGGATTGAAACAT...GGAGACAAACTGCATCTTCTCTTGCTCACTTTGTGCCTCTGACACTGACCTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS-3UTR CAA 90 bp | GGAACAAGCAGAGGGTTGGGTGCAAAGTCTACCCCGAGGGCACAGGGGCAGGAGATCGTGGGGAGAGAGTaGTTATTAATGGGCTGCTGG | + |
Preference number: 5 (lower is better) Translates to: GTSRGLGAKSTPRAQGQEIVGRE*LLMGCW Trigger: CCAGCAGCCCATTAATAACAACTCTCTCCCCACGAT...CTCCTGCCCCTGTGCCCTCGGGGTAGACTTTGCACCCAACCCTCTGCTTGTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS CCA 90 bp | TCTAATCTCCACATCGTGGGGAGAGAGTTGTTATTAATGGGCTGCTaGGGAGTAGGCTCCTGGGGGAGTGTGGTCATATGCTGCAAGTGC | + |
Preference number: 5 (lower is better) Translates to: SNLHIVGRELLLMGC*GVGSWGSVVICCKC Trigger: GCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTGGAGATTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS TCA 90 bp | ATTATTATGTCCAGGGTCAGTTGCACTGTGTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTATGTCCCATCTGTTCCCGTGTATGTG | + |
Preference number: 5 (lower is better) Translates to: IIMSRVSCTVSPIWE*SSNLQYVPSVPVYV Trigger: CACATACACGGGAACAGATGGGACATACTGGAGATTACTGGATCATTCCCAGATGGGCGACACAGTGCAACTGACCCTGGACATAATAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS GCA 90 bp | TGGTCATATGCTGCAAGTGCACAGTTACACATGTTTCAATCCTGTTaGCATGTGATGAATGAGAAGTTTCCACGTTTACAGCTATCCACA | + |
Preference number: 5 (lower is better) Translates to: WSYAASAQLHMFQSC*HVMNEKFPRLQLST Trigger: TGTGGATAGCTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS CCA 72 bp | CACATCGTGGGGAGAGAGTTGTTATTAATGGGCTGCTaGGGAGTAGGCTCCTGGGGGAGTGTGGTCATATGC | + |
Preference number: 6 (lower is better) Translates to: HIVGRELLLMGC*GVGSWGSVVIC Trigger: GCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS TCA 72 bp | TCCAGGGTCAGTTGCACTGTGTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTATGTCCCATCTGTTCCC | + |
Preference number: 6 (lower is better) Translates to: SRVSCTVSPIWE*SSNLQYVPSVP Trigger: GGGAACAGATGGGACATACTGGAGATTACTGGATCATTCCCAGATGGGCGACACAGTGCAACTGACCCTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS CCA 72 bp | GAGTTGTTATTAATGGGCTGCTGGGGAGTAGGCTCCTaGGGGAGTGTGGTCATATGCTGCAAGTGCACAGTT | + |
Preference number: 6 (lower is better) Translates to: ELLLMGCWGVGS*GSVVICCKCTV Trigger: AACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS CAA 72 bp | TTCCTGGACTCTAATCTCCACATCGTGGGGAGAGAGTaGTTATTAATGGGCTGCTGGGGAGTAGGCTCCTGG | + |
Preference number: 6 (lower is better) Translates to: FLDSNLHIVGRE*LLMGCWGVGSW Trigger: CCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS GCA 72 bp | TGGGGAGTAGGCTCCTGGGGGAGTGTGGTCATATGCTaGAAGTGCACAGTTACACATGTTTCAATCCTGTTG | + |
Preference number: 6 (lower is better) Translates to: WGVGSWGSVVIC*KCTVTHVSILL Trigger: CAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTACTCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS GCA 72 bp | GTAGGCTCCTGGGGGAGTGTGGTCATATGCTGCAAGTaGACAGTTACACATGTTTCAATCCTGTTGCCATGT | + |
Preference number: 6 (lower is better) Translates to: VGSWGSVVICCK*TVTHVSILLPC Trigger: ACATGGCAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGCATATGACCACACTCCCCCAGGAGCCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS CCA 72 bp | TCCAGTATGTCCCATCTGTTCCCGTGTATGTGTTCCTaGACTCTAATCTCCACATCGTGGGGAGAGAGTTGT | + |
Preference number: 6 (lower is better) Translates to: SSMSHLFPCMCS*TLISTSWGESC Trigger: ACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCAGGAACACATACACGGGAACAGATGGGACATACTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS GCA 72 bp | GCTGCAAGTGCACAGTTACACATGTTTCAATCCTGTTaGCATGTGATGAATGAGAAGTTTCCACGTTTACAG | + |
Preference number: 6 (lower is better) Translates to: AASAQLHMFQSC*HVMNEKFPRLQ Trigger: CTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAGGATTGAAACATGTGTAACTGTGCACTTGCAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |
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CDS TCA 72 bp | GTTACACATGTTTCAATCCTGTTGCCATGTGATGAATaGGAAGTTTCCACGTTTACAGCTATCCACACTCTA | + |
Preference number: 6 (lower is better) Translates to: VTHVSILLPCDE*EVSTFTAIHTL Trigger: TAGAGTGTGGATAGCTGTAAACGTGGAAACTTCTCATTCATCACATGGCAACAGGATTGAAACATGTGTAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000717.9 |