Pregenerated sensors for TCL1B3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068940Ensembl transcript IDs: ENSMUST00000090990.6
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCACTGAGTGGCCTCTACCCAGCACCAGTCGAACTTCTTGCCAGTaGTGGCTCAGAGGCCCACAGGGCATAGAGTCCCTATCTGTACCT | + |
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Preference number: 1 (lower is better) Translates to: STEWPLPSTSRTSCQ*WLRGPQGIESLSVP Trigger: AGGTACAGATAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGCCACTCAGTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR TCA 90 bp | ACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCTTCAAGCTACTaGGCACTGAGTGGCCTCTACCCAGCACCAGTCGAACTTCTTGCC | + |
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Preference number: 1 (lower is better) Translates to: TPDVLCKSHTVPSSY*ALSGLYPAPVELLA Trigger: GGCAAGAAGTTCGACTGGTGCTGGGTAGAGGCCACTCAGTGCTCAGTAGCTTGAAGGCACAGTGTGAGACTTACAGAGAACATCTGGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR CCA 90 bp | GGCCTAGGGTCAGATTCACTTCCTGGAGCCAAGGAACTGAGCACCTaGACAAGTACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCT | + |
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Preference number: 1 (lower is better) Translates to: GLGSDSLPGAKELST*TSTPDVLCKSHTVP Trigger: AGGCACAGTGTGAGACTTACAGAGAACATCTGGAGTACTTGTCCAGGTGCTCAGTTCCTTGGCTCCAGGAAGTGAATCTGACCCTAGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR TCA 90 bp | AAAGCAGGTCTAATCATGGCAGGAGGTGCTGTAGAACTAGAAACTTaGGGAACAAACAGAGGGGTGGGTGCAAAGTCTACCCCAAGGGCA | + |
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Preference number: 1 (lower is better) Translates to: KAGLIMAGGAVELET*GTNRGVGAKSTPRA Trigger: TGCCCTTGGGGTAGACTTTGCACCCACCCCTCTGTTTGTTCCTCAAGTTTCTAGTTCTACAGCACCTCCTGCCATGATTAGACCTGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR TCA 90 bp | GTCTTAAGAAAAGCCATCTATAAGGTCAGGGCCAGAGGCACAAAATaGGCAAGAGAAGATGCAGTTTGTCTCCAGCTAGGGAGAACGGTC | + |
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Preference number: 1 (lower is better) Translates to: VLRKAIYKVRARGTK*AREDAVCLQLGRTV Trigger: GACCGTTCTCCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCATTTTGTGCCTCTGGCCCTGACCTTATAGATGGCTTTTCTTAAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR GCA 90 bp | CAGAAAGTAGATAATCTAAAAAGCAGGTCTAATCATGGCAGGAGGTaGTGTAGAACTAGAAACTTGAGGAACAAACAGAGGGGTGGGTGC | + |
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Preference number: 1 (lower is better) Translates to: QKVDNLKSRSNHGRR*CRTRNLRNKQRGGC Trigger: GCACCCACCCCTCTGTTTGTTCCTCAAGTTTCTAGTTCTACAGCACCTCCTGCCATGATTAGACCTGCTTTTTAGATTATCTACTTTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR-3UTR GCA 90 bp | TGCAGTTTGTCTCCAGCTAGGGAGAACGGTCAGGACAGAGTTAGGCCAGGCTCAAATCATGGCAGGAGGTaGTGTAGAACTAGAAACTTG | + |
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Preference number: 2 (lower is better) Translates to: CSLSPARENGQDRVRPGSNHGRR*CRTRNL Trigger: CAAGTTTCTAGTTCTACAGCACCTCCTGCCATGATT...TGAGCCTGGCCTAACTCTGTCCTGACCGTTCTCCCTAGCTGGAGACAAACTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR-3UTR GCA 90 bp | TGGACAAGTACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCTTCAAGCTACATGAGCAAGAGAAGATaGAGTTTGTCTCCAGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: WTSTPDVLCKSHTVPSSYMSKRR*SLSPAR Trigger: CCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCAT...GTAGCTTGAAGGCACAGTGTGAGACTTACAGAGAACATCTGGAGTACTTGTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR TCA 72 bp | TGGCCTCTACCCAGCACCAGTCGAACTTCTTGCCAGTaGTGGCTCAGAGGCCCACAGGGCATAGAGTCCCTA | + |
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Preference number: 3 (lower is better) Translates to: WPLPSTSRTSCQ*WLRGPQGIESL Trigger: TAGGGACTCTATGCCCTGTGGGCCTCTGAGCCATCACTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR CCA 72 bp | GTCTCACACTGTGCCTTCAAGCTACTGAGCACTGAGTaGCCTCTACCCAGCACCAGTCGAACTTCTTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: VSHCAFKLLSTE*PLPSTSRTSCQ Trigger: CTGGCAAGAAGTTCGACTGGTGCTGGGTAGAGGCCACTCAGTGCTCAGTAGCTTGAAGGCACAGTGTGAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR GCA 72 bp | GGTCAGGGCCAGAGGCACAAAATGAGCAAGAGAAGATaGAGTTTGTCTCCAGCTAGGGAGAACGGTCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: GQGQRHKMSKRR*SLSPARENGQD Trigger: GTCCTGACCGTTCTCCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCATTTTGTGCCTCTGGCCCTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR TCA 72 bp | GTAAGTCTCACACTGTGCCTTCAAGCTACTGAGCACTaGGTGGCCTCTACCCAGCACCAGTCGAACTTCTTG | + |
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Preference number: 3 (lower is better) Translates to: VSLTLCLQATEH*VASTQHQSNFL Trigger: CAAGAAGTTCGACTGGTGCTGGGTAGAGGCCACTCAGTGCTCAGTAGCTTGAAGGCACAGTGTGAGACTTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR TCA 72 bp | AAAGCCATCTATAAGGTCAGGGCCAGAGGCACAAAATaGGCAAGAGAAGATGCAGTTTGTCTCCAGCTAGGG | + |
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Preference number: 3 (lower is better) Translates to: KAIYKVRARGTK*AREDAVCLQLG Trigger: CCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCATTTTGTGCCTCTGGCCCTGACCTTATAGATGGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR GCA 72 bp | GATAATCTAAAAAGCAGGTCTAATCATGGCAGGAGGTaGTGTAGAACTAGAAACTTGAGGAACAAACAGAGG | + |
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Preference number: 3 (lower is better) Translates to: DNLKSRSNHGRR*CRTRNLRNKQR Trigger: CCTCTGTTTGTTCCTCAAGTTTCTAGTTCTACAGCACCTCCTGCCATGATTAGACCTGCTTTTTAGATTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR CCA 90 bp | GTCTACCCCAAGGGCACAGGGGCAGGAGCCAGCCAGGCTATCAAGACCTTCCCATTATTAATGGGCTGCTaGGGAGTAGGCTCCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: VYPKGTGAGASQAIKTFPLLMGC*GVGSWG Trigger: CCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAA...TGGGAAGGTCTTGATAGCCTGGCTGGCTCCTGCCCCTGTGCCCTTGGGGTAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR GCA 90 bp | TCTACCCCAAGGGCACAGGGGCAGGAGCCAGCCAGGCTATCAAGACCTTCCCATAGAAGTTTCTACTTTTaGAACTACCCACTGTCTACC | + |
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Preference number: 4 (lower is better) Translates to: STPRAQGQEPARLSRPSHRSFYF*NYPLST Trigger: GGTAGACAGTGGGTAGTTGCAAAAGTAGAAACTTCT...ATGGGAAGGTCTTGATAGCCTGGCTGGCTCCTGCCCCTGTGCCCTTGGGGTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR CCA 90 bp | CTGAGCACCTGGACAAGTACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCTGCTCCTGGGGGATTGTaGTCATATGCTGCAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSTWTSTPDVLCKSHTVPAPGGL*SYAASA Trigger: TGCACTTGCAGCATATGACCACAATCCCCCAGGAGC...AGGCACAGTGTGAGACTTACAGAGAACATCTGGAGTACTTGTCCAGGTGCTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| 3UTR CAA 72 bp | GGCCAGAGGCACAAAATGAGCAAGAGAAGATGCAGTTaGTCTCCAGCTAGGGAGAACGGTCAGGACAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GQRHKMSKRRCS*SPARENGQDRV Trigger: AACTCTGTCCTGACCGTTCTCCCTAGCTGGAGACAAACTGCATCTTCTCTTGCTCATTTTGTGCCTCTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR GCA 90 bp | GCAGTTTGTCTCCAGCTAGGGAGAACGGTCAGGACAGAGTTAGGCCAGGCTCACATTGTGGTCATATGCTaGAAGTGCACAGTTATACAT | + |
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Preference number: 4 (lower is better) Translates to: AVCLQLGRTVRTELGQAHIVVIC*KCTVIH Trigger: ATGTATAACTGTGCACTTGCAGCATATGACCACAAT...GTGAGCCTGGCCTAACTCTGTCCTGACCGTTCTCCCTAGCTGGAGACAAACTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR CCA 90 bp | GCACCTGGACAAGTACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCTTCAACCGTGTATGTGTTCATaGACTCTAATCTCCACATCG | + |
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Preference number: 4 (lower is better) Translates to: APGQVLQMFSVSLTLCLQPCMCS*TLISTS Trigger: CGATGTGGAGATTAGAGTCCATGAACACATACACGG...TTGAAGGCACAGTGTGAGACTTACAGAGAACATCTGGAGTACTTGTCCAGGTGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR GCA 90 bp | GTACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCTTCAAGCTACTGAGCACGGGATTGTGGTCATATaGTGCAAGTGCACAGTTATA | + |
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Preference number: 4 (lower is better) Translates to: VLQMFSVSLTLCLQATEHGIVVI*CKCTVI Trigger: TATAACTGTGCACTTGCAGCATATGACCACAATCCC...GTGCTCAGTAGCTTGAAGGCACAGTGTGAGACTTACAGAGAACATCTGGAGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 90 bp | TGCTGGGGAGTAGGCTCCTGGGGGATTGTGGTCATATGCTGCAAGTaGACAGTTATACATGTTTCAATCCTGCTGCCATATGGTGAACGA | + |
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Preference number: 5 (lower is better) Translates to: CWGVGSWGIVVICCK*TVIHVSILLPYGER Trigger: TCGTTCACCATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGCATATGACCACAATCCCCCAGGAGCCTACTCCCCAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 90 bp | TTAATGGGCTGCTGGGGAGTAGGCTCCTGGGGGATTGTGGTCATATaGTGCAAGTGCACAGTTATACATGTTTCAATCCTGCTGCCATAT | + |
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Preference number: 5 (lower is better) Translates to: LMGCWGVGSWGIVVI*CKCTVIHVSILLPY Trigger: ATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGCATATGACCACAATCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR CAA 90 bp | GAAGATGCAGTTTGTCTCCAGCTAGGGAGAACGGTCAGGACAGAGTTAGGCCAGGAGAAGTTTCTACTTTaGCAACTACCCACTGTCTAC | + |
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Preference number: 5 (lower is better) Translates to: EDAVCLQLGRTVRTELGQEKFLL*QLPTVY Trigger: GTAGACAGTGGGTAGTTGCAAAAGTAGAAACTTCTC...CTGGCCTAACTCTGTCCTGACCGTTCTCCCTAGCTGGAGACAAACTGCATCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 90 bp | CTACCCACTGTCTACCATTTTCATCCTCATAGATGTCATCTCTTGTaGAGACCAGGAAGCGAGGTGGGAATGGCATCCAGGGAAAATGAA | + |
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Preference number: 5 (lower is better) Translates to: LPTVYHFHPHRCHLL*RPGSEVGMASRENE Trigger: TTCATTTTCCCTGGATGCCATTCCCACCTCGCTTCCTGGTCTGCACAAGAGATGACATCTATGAGGATGAAAATGGTAGACAGTGGGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS-3UTR CAA 90 bp | TGGACAAGTACTCCAGATGTTCTCTGTAAGTCTCACACTGTGCCTTCAAGCTACTATGTCCAGGATCAGTaGCAATGTGTCGCCCATCTG | + |
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Preference number: 5 (lower is better) Translates to: WTSTPDVLCKSHTVPSSYYVQDQ*QCVAHL Trigger: CAGATGGGCGACACATTGCAACTGATCCTGGACATA...GTAGCTTGAAGGCACAGTGTGAGACTTACAGAGAACATCTGGAGTACTTGTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS TCA 90 bp | ATTACTATGTCCAGGATCAGTTGCAATGTGTCGCCCATCTGGGAATaGTCCAGTAATCTCCAGTATGTCCCATCTGTTCCCGTGTATGTG | + |
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Preference number: 5 (lower is better) Translates to: ITMSRISCNVSPIWE*SSNLQYVPSVPVYV Trigger: CACATACACGGGAACAGATGGGACATACTGGAGATTACTGGATCATTCCCAGATGGGCGACACATTGCAACTGATCCTGGACATAGTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS TCA 90 bp | CTGCAAGTGCACAGTTATACATGTTTCAATCCTGCTGCCATATGGTaGACGAGAAGTTTCTACTTTTGCAACTACCCACTGTCTACCATT | + |
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Preference number: 5 (lower is better) Translates to: LQVHSYTCFNPAAIW*TRSFYFCNYPLSTI Trigger: AATGGTAGACAGTGGGTAGTTGCAAAAGTAGAAACTTCTCGTTCACCATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 90 bp | TGGTCATATGCTGCAAGTGCACAGTTATACATGTTTCAATCCTGCTaGCATATGGTGAACGAGAAGTTTCTACTTTTGCAACTACCCACT | + |
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Preference number: 5 (lower is better) Translates to: WSYAASAQLYMFQSC*HMVNEKFLLLQLPT Trigger: AGTGGGTAGTTGCAAAAGTAGAAACTTCTCGTTCACCATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGCATATGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS CCA 72 bp | CACATCGTGGGGAGAGAGTTGTTATTAATGGGCTGCTaGGGAGTAGGCTCCTGGGGGATTGTGGTCATATGC | + |
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Preference number: 6 (lower is better) Translates to: HIVGRELLLMGC*GVGSWGIVVIC Trigger: GCATATGACCACAATCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS CCA 72 bp | GAGTTGTTATTAATGGGCTGCTGGGGAGTAGGCTCCTaGGGGATTGTGGTCATATGCTGCAAGTGCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: ELLLMGCWGVGS*GIVVICCKCTV Trigger: AACTGTGCACTTGCAGCATATGACCACAATCCCCCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS CAA 72 bp | TTCATGGACTCTAATCTCCACATCGTGGGGAGAGAGTaGTTATTAATGGGCTGCTGGGGAGTAGGCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: FMDSNLHIVGRE*LLMGCWGVGSW Trigger: CCAGGAGCCTACTCCCCAGCAGCCCATTAATAACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 72 bp | GTCTACCATTTTCATCCTCATAGATGTCATCTCTTGTaGAGACCAGGAAGCGAGGTGGGAATGGCATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: VYHFHPHRCHLL*RPGSEVGMASR Trigger: CCTGGATGCCATTCCCACCTCGCTTCCTGGTCTGCACAAGAGATGACATCTATGAGGATGAAAATGGTAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 72 bp | TGGGGAGTAGGCTCCTGGGGGATTGTGGTCATATGCTaGAAGTGCACAGTTATACATGTTTCAATCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: WGVGSWGIVVIC*KCTVIHVSILL Trigger: CAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGCATATGACCACAATCCCCCAGGAGCCTACTCCCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS CCA 72 bp | TCCAGTATGTCCCATCTGTTCCCGTGTATGTGTTCATaGACTCTAATCTCCACATCGTGGGGAGAGAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: SSMSHLFPCMCS*TLISTSWGESC Trigger: ACAACTCTCTCCCCACGATGTGGAGATTAGAGTCCATGAACACATACACGGGAACAGATGGGACATACTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS CAA 72 bp | ACTGTCTACCATTTTCATCCTCATAGATGTCATCTCTaGTGCAGACCAGGAAGCGAGGTGGGAATGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: TVYHFHPHRCHL*CRPGSEVGMAS Trigger: GGATGCCATTCCCACCTCGCTTCCTGGTCTGCACAAGAGATGACATCTATGAGGATGAAAATGGTAGACAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 72 bp | GTAGGCTCCTGGGGGATTGTGGTCATATGCTGCAAGTaGACAGTTATACATGTTTCAATCCTGCTGCCATAT | + |
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Preference number: 6 (lower is better) Translates to: VGSWGIVVICCK*TVIHVSILLPY Trigger: ATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGCATATGACCACAATCCCCCAGGAGCCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS CAA 72 bp | TCCTGCTGCCATATGGTGAACGAGAAGTTTCTACTTTaGCAACTACCCACTGTCTACCATTTTCATCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: SCCHMVNEKFLL*QLPTVYHFHPH Trigger: ATGAGGATGAAAATGGTAGACAGTGGGTAGTTGCAAAAGTAGAAACTTCTCGTTCACCATATGGCAGCAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS TCA 72 bp | CACAGTTATACATGTTTCAATCCTGCTGCCATATGGTaGACGAGAAGTTTCTACTTTTGCAACTACCCACTG | + |
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Preference number: 6 (lower is better) Translates to: HSYTCFNPAAIW*TRSFYFCNYPL Trigger: CAGTGGGTAGTTGCAAAAGTAGAAACTTCTCGTTCACCATATGGCAGCAGGATTGAAACATGTATAACTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 72 bp | GCTGCAAGTGCACAGTTATACATGTTTCAATCCTGCTaGCATATGGTGAACGAGAAGTTTCTACTTTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: AASAQLYMFQSC*HMVNEKFLLLQ Trigger: TTGCAAAAGTAGAAACTTCTCGTTCACCATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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| CDS GCA 72 bp | TATGCTGCAAGTGCACAGTTATACATGTTTCAATCCTaGTGCCATATGGTGAACGAGAAGTTTCTACTTTTG | + |
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Preference number: 6 (lower is better) Translates to: YAASAQLYMFQS*CHMVNEKFLLL Trigger: CAAAAGTAGAAACTTCTCGTTCACCATATGGCAGCAGGATTGAAACATGTATAACTGTGCACTTGCAGCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090990.6 |
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