Pregenerated sensors for TCIM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056313Ensembl transcript IDs: ENSMUST00000052622.6
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTCAGGCTATGTCCTTTCCTGCTGTGAGAGTTCTCAACGCCTGCTaGAGGCACTTGGCTCCCAGTGGGACAGCTCAGGGCTGCAATGAG | + |
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Preference number: 1 (lower is better) Translates to: SQAMSFPAVRVLNAC*RHLAPSGTAQGCNE Trigger: CTCATTGCAGCCCTGAGCTGTCCCACTGGGAGCCAAGTGCCTTCAGCAGGCGTTGAGAACTCTCACAGCAGGAAAGGACATAGCCTGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR TCA 90 bp | TCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTCCTGCTGTaGGAGTTCTCAACGCCTGCTGAAGGCACTTGGCTCCCAGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: SGQCLHPLRLCPFLL*EFSTPAEGTWLPVG Trigger: TCCCACTGGGAGCCAAGTGCCTTCAGCAGGCGTTGAGAACTCTCACAGCAGGAAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR GCA 90 bp | AGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTCCTaGTGTGAGAGTTCTCAACGCCTGCTGAAGGCACTTGGCTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: SVLVSASILSGYVLS*CESSQRLLKALGSQ Trigger: CTGGGAGCCAAGTGCCTTCAGCAGGCGTTGAGAACTCTCACAGCAGGAAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR GCA 90 bp | ACAAGAACAAAAACCAAGTTAGGTTTGAGTTTAGTCTTAGGGCCTTaGCAACGGCCCTGGGTGCGTGCACTCAGTCCCCACAAACGCAGT | + |
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Preference number: 1 (lower is better) Translates to: TRTKTKLGLSLVLGP*QRPWVRALSPHKRS Trigger: ACTGCGTTTGTGGGGACTGAGTGCACGCACCCAGGGCCGTTGGCAAGGCCCTAAGACTAAACTCAAACCTAACTTGGTTTTTGTTCTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR GCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTGCGGGACACTGCCCGTaGCAGAGCTGGCAGGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFAGHCP*QSWQAH Trigger: GTGAGCCTGCCAGCTCTGGCACGGGCAGTGTCCCGC...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR GCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTCTTTTCGCGGGACACTaGCCGTGCCAGAGCTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFLFAGH*PCQSWQ Trigger: CTGCCAGCTCTGGCACGGGCAGTGTCCCGCGAAAAG...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR GCA 90 bp | AAATCCTGTAGAAACATAGCCCATGCTGTGGGGTTTTACTGGGCTGGGCCAGGCACGGCCCTGGGTGCGTaGACTCAGTCCCCACAAACG | + |
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Preference number: 2 (lower is better) Translates to: KSCRNIAHAVGFYWAGPGTALGA*TQSPQT Trigger: CGTTTGTGGGGACTGAGTGCACGCACCCAGGGCCGT...GCCTGGCCCAGCCCAGTAAAACCCCACAGCATGGGCTATGTTTCTACAGGATTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR CCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTCCTGCTGAAGGCACTTaGCTCCCAGTGGGACAGCTC | + |
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Preference number: 2 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFPAEGT*LPVGQL Trigger: GAGCTGTCCCACTGGGAGCCAAGTGCCTTCAGCAGG...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR TCA 90 bp | AAATCCTGTAGAAACATAGCCCATGCTGTGGGGTTTTACTGGGCTGGGCCAGGCGTTCTCAACGCCTGCTaGAGGCACTTGGCTCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: KSCRNIAHAVGFYWAGPGVLNAC*RHLAPS Trigger: ACTGGGAGCCAAGTGCCTTCAGCAGGCGTTGAGAAC...GCCTGGCCCAGCCCAGTAAAACCCCACAGCATGGGCTATGTTTCTACAGGATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR TCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTAGTCTGTGTAGCTGGTaGGTTATGTATGTCCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFSLCSW*VMYVPF Trigger: GAAAGGGACATACATAACTCACCAGCTACACAGACT...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR CCA 90 bp | TTGTTCACAGTCCTTCGGATTTATGAAGGGCCCCATTATTTCAGCTTTGTGCAAGCACTTGGCTCCCAGTaGGACAGCTCAGGGCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: LFTVLRIYEGPHYFSFVQALGSQ*DSSGLQ Trigger: TTGCAGCCCTGAGCTGTCCCACTGGGAGCCAAGTGC...TTGCACAAAGCTGAAATAATGGGGCCCTTCATAAATCCGAAGGACTGTGAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR GCA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGGCCAACGGCCCTGGGTaGGTGCACTCAGTCCCCACA | + |
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Preference number: 2 (lower is better) Translates to: KWVCICCSDRGEISRKMKANGPG*VHSVPT Trigger: TGTGGGGACTGAGTGCACGCACCCAGGGCCGTTGGC...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR CCA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGTGCCCGTGCCAGAGCTaGCAGGCTCACTGGGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: KWVCICCSDRGEISRKMKCPCQS*QAHWVF Trigger: AAAGACCCAGTGAGCCTGCCAGCTCTGGCACGGGCA...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR GCA 90 bp | AAATCCTGTAGAAACATAGCCCATGCTGTGGGGTTTTACTGGGCTGGGCCAGGCTCAGTAAACCACTTATaGTTCATATTCCTTCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: KSCRNIAHAVGFYWAGPGSVNHL*FIFLLF Trigger: GAAGAGAAGGAATATGAAGCATAAGTGGTTTACTGA...GCCTGGCCCAGCCCAGTAAAACCCCACAGCATGGGCTATGTTTCTACAGGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR TCA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGTGTCCTTTCCTGCTGTaGGAGTTCTCAACGCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: KWVCICCSDRGEISRKMKCPFLL*EFSTPA Trigger: AGCAGGCGTTGAGAACTCTCACAGCAGGAAAGGACA...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR GCA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGGGGACAGCTCAGGGCTaGAATGAGTTGCAAGTCTGT | + |
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Preference number: 2 (lower is better) Translates to: KWVCICCSDRGEISRKMKGTAQG*NELQVC Trigger: ACAGACTTGCAACTCATTGCAGCCCTGAGCTGTCCC...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR CCA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGTGCCAAATTACTCTGTaGGAAACTCTATGCCATGAA | + |
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Preference number: 2 (lower is better) Translates to: KWVCICCSDRGEISRKMKCQITL*ETLCHE Trigger: TTCATGGCATAGAGTTTCCCACAGAGTAATTTGGCA...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR TCA 72 bp | ATGTCCTTTCCTGCTGTGAGAGTTCTCAACGCCTGCTaGAGGCACTTGGCTCCCAGTGGGACAGCTCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: MSFPAVRVLNAC*RHLAPSGTAQG Trigger: GCCCTGAGCTGTCCCACTGGGAGCCAAGTGCCTTCAGCAGGCGTTGAGAACTCTCACAGCAGGAAAGGACAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR GCA 72 bp | TGCACTCAGTCCCCACAAACGCAGTGTTCTGGTCAGTaGCTCCATCCTCTCAGGCTATGTCCTTTCCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: CTQSPQTQCSGQ*LHPLRLCPFLL Trigger: CAGCAGGAAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGGGACTGAGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR CAA 90 bp | AAATCCTGTAGAAACATAGCCCATGCTGTGGGGTTTTACTGGGCTGGGCCAGGCCAGGGCTGCAATGAGTaGCAAGTCTGTGTAGCTGGT | + |
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Preference number: 3 (lower is better) Translates to: KSCRNIAHAVGFYWAGPGQGCNE*QVCVAG Trigger: ACCAGCTACACAGACTTGCAACTCATTGCAGCCCTG...GCCTGGCCCAGCCCAGTAAAACCCCACAGCATGGGCTATGTTTCTACAGGATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR CCA 72 bp | GAAGGCTCTGTAGACACTTGGCGCTGTAACTTGTTTTaGAAAAGTTTGGCAATCAGCATAAAGCTACTCTGG | + |
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Preference number: 3 (lower is better) Translates to: EGSVDTWRCNLF*KSLAISIKLLW Trigger: CCAGAGTAGCTTTATGCTGATTGCCAAACTTTTCCAAAACAAGTTACAGCGCCAAGTGTCTACAGAGCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR TCA 72 bp | GCACATTCGAAAGTTGTTCACAGTCCTTCGGATTTATaGAGGGCCCCATTATTTCAGCTTTGTGCAAACCAT | + |
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Preference number: 3 (lower is better) Translates to: AHSKVVHSPSDL*RAPLFQLCANH Trigger: ATGGTTTGCACAAAGCTGAAATAATGGGGCCCTTCATAAATCCGAAGGACTGTGAACAACTTTCGAATGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR-3UTR CAA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGTCCTATATTTTTCCCTaGGGGACGGATCACCACAGA | + |
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Preference number: 3 (lower is better) Translates to: KWVCICCSDRGEISRKMKSYIFP*GTDHHR Trigger: TCTGTGGTGATCCGTCCCCAAGGGAAAAATATAGGA...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR CCA 72 bp | TCGAACTTCAAAACATACCGTTTAGGAAGAAATAAATaGGTATGTATCTGCTGTAGTGACAGAGGAGAAATT | + |
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Preference number: 3 (lower is better) Translates to: SNFKTYRLGRNK*VCICCSDRGEI Trigger: AATTTCTCCTCTGTCACTACAGCAGATACATACCCATTTATTTCTTCCTAAACGGTATGTTTTGAAGTTCGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR GCA 90 bp | TGCACTCAGTCCCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGTGCCCACAGCTTTCTTaGGAGCGGCTGTGTCGAAGT | + |
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Preference number: 4 (lower is better) Translates to: CTQSPQTQCSGQCLHPLRCPQLS*ERLCRS Trigger: ACTTCGACACAGCCGCTCGCAAGAAAGCTGTGGGCA...CCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGGGACTGAGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR TCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTTGTCTCCGGAGTTCCTaGAGAGCCTCTGCAGGGACT | + |
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Preference number: 4 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFCLRSS*RASAGT Trigger: AGTCCCTGCAGAGGCTCTTCAGGAACTCCGGAGACA...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR GCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTCTTGGCCCGCTCCTCTaGCTTCTTGTCTCCGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFLGPLL*LLVSGV Trigger: AACTCCGGAGACAAGAAGGCAGAGGAGCGGGCCAAG...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR TCA 90 bp | AAATCCTGTAGAAACATAGCCCATGCTGTGGGGTTTTACTGGGCTGGGCCAGGCGGTCGATGGCAAAAATaGTCTTGGCCCGCTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KSCRNIAHAVGFYWAGPGGRWQK*SWPAPL Trigger: CAGAGGAGCGGGCCAAGATCATTTTTGCCATCGACC...GCCTGGCCCAGCCCAGTAAAACCCCACAGCATGGGCTATGTTTCTACAGGATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR GCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTTTCCTGAAGAGCCTCTaGAGGGACTCCTGGTCTATG | + |
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Preference number: 4 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFFLKSL*RDSWSM Trigger: CATAGACCAGGAGTCCCTGCAGAGGCTCTTCAGGAA...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CCA 90 bp | TGCACTCAGTCCCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTCTGCAGGGACTCCTaGTCTATGTTCTCAAAGATG | + |
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Preference number: 4 (lower is better) Translates to: CTQSPQTQCSGQCLHPLRLCRDS*SMFSKM Trigger: CATCTTTGAGAACATAGACCAGGAGTCCCTGCAGAG...CCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGGGACTGAGTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| 3UTR CAA 72 bp | TTGGCTCCCAGTGGGACAGCTCAGGGCTGCAATGAGTaGCAAGTCTGTGTAGCTGGTGAGTTATGTATGTCC | + |
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Preference number: 4 (lower is better) Translates to: LAPSGTAQGCNE*QVCVAGELCMS Trigger: GGACATACATAACTCACCAGCTACACAGACTTGCAACTCATTGCAGCCCTGAGCTGTCCCACTGGGAGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR GCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTTGTTCTCAAAGATGTTaGCCACAGCTTTCTTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFCSQRC*PQLSCE Trigger: CTCGCAAGAAAGCTGTGGGCAACATCTTTGAGAACA...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR TCA 90 bp | AAATCCTGTAGAAACATAGCCCATGCTGTGGGGTTTTACTGGGCTGGGCCAGGCCGCAGTTTGAGAAACTaGAGAAGCTTGTCTTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: KSCRNIAHAVGFYWAGPGRSLRN*RSLSFV Trigger: GACAAAAGACAAGCTTCTTCAGTTTCTCAAACTGCG...GCCTGGCCCAGCCCAGTAAAACCCCACAGCATGGGCTATGTTTCTACAGGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR TCA 90 bp | TTGTTCACAGTCCTTCGGATTTATGAAGGGCCCCATTATTTCAGCTTTGTGCAAGACATGCTGGTGGCTTaGTGGCTTGGCTTGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LFTVLRIYEGPHYFSFVQDMLVA*WLGLAF Trigger: GAAAGCCAAGCCAAGCCATCAAGCCACCAGCATGTC...TTGCACAAAGCTGAAATAATGGGGCCCTTCATAAATCCGAAGGACTGTGAACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CCA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTTTCTCCTCCAAATCTTaGTCGATGGCAAAAATGATC | + |
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Preference number: 4 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFFSSKS*SMAKMI Trigger: GATCATTTTTGCCATCGACCAAGATTTGGAGGAGAA...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CCA 90 bp | CCACAGCTTTCTTGCGAGCGGCTGTGTCGAAGTGGTAGCCGTGGATaGACGGGCTTACTCGAAGAGACGAGGACATGCTGGTGGCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: PQLSCERLCRSGSRG*TGLLEETRTCWWLD Trigger: ATCAAGCCACCAGCATGTCCTCGTCTCTTCGAGTAAGCCCGTCCATCCACGGCTACCACTTCGACACAGCCGCTCGCAAGAAAGCTGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS GCA 90 bp | GCCCGCTCCTCTGCCTTCTTGTCTCCGGAGTTCCTGAAGAGCCTCTaGAGGGACTCCTGGTCTATGTTCTCAAAGATGTTGCCCACAGCT | + |
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Preference number: 5 (lower is better) Translates to: ARSSAFLSPEFLKSL*RDSWSMFSKMLPTA Trigger: AGCTGTGGGCAACATCTTTGAGAACATAGACCAGGAGTCCCTGCAGAGGCTCTTCAGGAACTCCGGAGACAAGAAGGCAGAGGAGCGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS GCA 90 bp | GGGACTCCTGGTCTATGTTCTCAAAGATGTTGCCCACAGCTTTCTTaGGAGCGGCTGTGTCGAAGTGGTAGCCGTGGATGGACGGGCTTA | + |
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Preference number: 5 (lower is better) Translates to: GTPGLCSQRCCPQLS*ERLCRSGSRGWTGL Trigger: TAAGCCCGTCCATCCACGGCTACCACTTCGACACAGCCGCTCGCAAGAAAGCTGTGGGCAACATCTTTGAGAACATAGACCAGGAGTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CAA 90 bp | CCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGCTATGTCCTTTTTGCCCACAGCTTTCTaGCGAGCGGCTGTGTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: PTNAVFWSVPPSSQAMSFLPTAF*RAAVSK Trigger: CTTCGACACAGCCGCTCGCAAGAAAGCTGTGGGCAA...AAAGGACATAGCCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS GCA 90 bp | CTCCAAATCTTGGTCGATGGCAAAAATGATCTTGGCCCGCTCCTCTaGCTTCTTGTCTCCGGAGTTCCTGAAGAGCCTCTGCAGGGACTC | + |
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Preference number: 5 (lower is better) Translates to: LQILVDGKNDLGPLL*LLVSGVPEEPLQGL Trigger: GAGTCCCTGCAGAGGCTCTTCAGGAACTCCGGAGACAAGAAGGCAGAGGAGCGGGCCAAGATCATTTTTGCCATCGACCAAGATTTGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CCA 90 bp | GCCTTCTTGTCTCCGGAGTTCCTGAAGAGCCTCTGCAGGGACTCCTaGTCTATGTTCTCAAAGATGTTGCCCACAGCTTTCTTGCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: AFLSPEFLKSLCRDS*SMFSKMLPTAFLRA Trigger: CGCTCGCAAGAAAGCTGTGGGCAACATCTTTGAGAACATAGACCAGGAGTCCCTGCAGAGGCTCTTCAGGAACTCCGGAGACAAGAAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CCA 90 bp | CTCTTCTTCAGGGCCATGAGGGCTCGAGTTTTCTCCTCCAAATCTTaGTCGATGGCAAAAATGATCTTGGCCCGCTCCTCTGCCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LFFRAMRARVFSSKS*SMAKMILARSSAFL Trigger: CAAGAAGGCAGAGGAGCGGGCCAAGATCATTTTTGCCATCGACCAAGATTTGGAGGAGAAAACTCGAGCCCTCATGGCCCTGAAGAAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CAA 90 bp | TGCACTCAGTCCCCACAAACGCAGTGTTCTGGTCAGTGCCTCCATCCTCTCAGGTTTCTCCTCCAAATCTaGGTCGATGGCAAAAATGAT | + |
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Preference number: 5 (lower is better) Translates to: CTQSPQTQCSGQCLHPLRFLLQI*VDGKND Trigger: ATCATTTTTGCCATCGACCAAGATTTGGAGGAGAAA...CCTGAGAGGATGGAGGCACTGACCAGAACACTGCGTTTGTGGGGACTGAGTGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CAA 90 bp | TTGTTCACAGTCCTTCGGATTTATGAAGGGCCCCATTATTTCAGCTTTGTGCAAGGACATGCTGGTGGCTaGATGGCTTGGCTTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: LFTVLRIYEGPHYFSFVQGHAGG*MAWLGF Trigger: AAAGCCAAGCCAAGCCATCAAGCCACCAGCATGTCC...TTGCACAAAGCTGAAATAATGGGGCCCTTCATAAATCCGAAGGACTGTGAACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CAA 90 bp | TTGTTCACAGTCCTTCGGATTTATGAAGGGCCCCATTATTTCAGCTTTGTGCAAATGGCAAAAATGATCTaGGCCCGCTCCTCTGCCTTC | + |
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Preference number: 5 (lower is better) Translates to: LFTVLRIYEGPHYFSFVQMAKMI*ARSSAF Trigger: GAAGGCAGAGGAGCGGGCCAAGATCATTTTTGCCAT...TTGCACAAAGCTGAAATAATGGGGCCCTTCATAAATCCGAAGGACTGTGAACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS-3UTR CAA 90 bp | AAATGGGTATGTATCTGCTGTAGTGACAGAGGAGAAATTTCACGAAAAATGAAGGAAGAAGCTTGTCTTTaGTCCTCTTCTTCAGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: KWVCICCSDRGEISRKMKEEACL*SSSSGP Trigger: TGGCCCTGAAGAAGAGGACAAAAGACAAGCTTCTTC...CTTCATTTTTCGTGAAATTTCTCCTCTGTCACTACAGCAGATACATACCCATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CCA 72 bp | TCTTGCGAGCGGCTGTGTCGAAGTGGTAGCCGTGGATaGACGGGCTTACTCGAAGAGACGAGGACATGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SCERLCRSGSRG*TGLLEETRTCW Trigger: CCAGCATGTCCTCGTCTCTTCGAGTAAGCCCGTCCATCCACGGCTACCACTTCGACACAGCCGCTCGCAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS TCA 72 bp | TGGCCCGCTCCTCTGCCTTCTTGTCTCCGGAGTTCCTaGAGAGCCTCTGCAGGGACTCCTGGTCTATGTTCT | + |
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Preference number: 6 (lower is better) Translates to: WPAPLPSCLRSS*RASAGTPGLCS Trigger: AGAACATAGACCAGGAGTCCCTGCAGAGGCTCTTCAGGAACTCCGGAGACAAGAAGGCAGAGGAGCGGGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS GCA 72 bp | GGTCTATGTTCTCAAAGATGTTGCCCACAGCTTTCTTaGGAGCGGCTGTGTCGAAGTGGTAGCCGTGGATGG | + |
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Preference number: 6 (lower is better) Translates to: GLCSQRCCPQLS*ERLCRSGSRGW Trigger: CCATCCACGGCTACCACTTCGACACAGCCGCTCGCAAGAAAGCTGTGGGCAACATCTTTGAGAACATAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS GCA 72 bp | TTGGTCGATGGCAAAAATGATCTTGGCCCGCTCCTCTaGCTTCTTGTCTCCGGAGTTCCTGAAGAGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LVDGKNDLGPLL*LLVSGVPEEPL Trigger: CAGAGGCTCTTCAGGAACTCCGGAGACAAGAAGGCAGAGGAGCGGGCCAAGATCATTTTTGCCATCGACCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CAA 72 bp | CTCTGCAGGGACTCCTGGTCTATGTTCTCAAAGATGTaGCCCACAGCTTTCTTGCGAGCGGCTGTGTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: LCRDSWSMFSKM*PTAFLRAAVSK Trigger: CTTCGACACAGCCGCTCGCAAGAAAGCTGTGGGCAACATCTTTGAGAACATAGACCAGGAGTCCCTGCAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CAA 72 bp | CAGGGCCATGAGGGCTCGAGTTTTCTCCTCCAAATCTaGGTCGATGGCAAAAATGATCTTGGCCCGCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: QGHEGSSFLLQI*VDGKNDLGPLL Trigger: GAGGAGCGGGCCAAGATCATTTTTGCCATCGACCAAGATTTGGAGGAGAAAACTCGAGCCCTCATGGCCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS GCA 72 bp | TCTGCAGGGACTCCTGGTCTATGTTCTCAAAGATGTTaGCCACAGCTTTCTTGCGAGCGGCTGTGTCGAAGT | + |
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Preference number: 6 (lower is better) Translates to: SAGTPGLCSQRC*PQLSCERLCRS Trigger: ACTTCGACACAGCCGCTCGCAAGAAAGCTGTGGGCAACATCTTTGAGAACATAGACCAGGAGTCCCTGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CCA 72 bp | AGGGCCATGAGGGCTCGAGTTTTCTCCTCCAAATCTTaGTCGATGGCAAAAATGATCTTGGCCCGCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RAMRARVFSSKS*SMAKMILARSS Trigger: AGAGGAGCGGGCCAAGATCATTTTTGCCATCGACCAAGATTTGGAGGAGAAAACTCGAGCCCTCATGGCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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| CDS CAA 90 bp | CCTCTTCTTCAGGGCCATGAGGGCTCGAGTTTTCTCCTCCAAATCTaGGTCGATGGCAAAAATGATCTTGGCCCGCTCCTCTGCCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PLLQGHEGSSFLLQI*VDGKNDLGPLLCLL Trigger: AAGAAGGCAGAGGAGCGGGCCAAGATCATTTTTGCCATCGACCAAGATTTGGAGGAGAAAACTCGAGCCCTCATGGCCCTGAAGAAGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052622.6 |
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