RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TCERG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024498

Ensembl transcript IDs: ENSMUST00000025375.15, ENSMUST00000173642.2, ENSMUST00000236088.2, ENSMUST00000236418.2, ENSMUST00000237390.2, ENSMUST00000237602.2, ENSMUST00000237646.2

Found 352 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTaGACAAATACAACTAAACTGCTCTTTAGAGACAAAGGTAAAAGT +
Preference number: 1 (lower is better)
Translates to: KTWPITPEGRIKAHT*TNTTKLLFRDKGKS
Trigger: ACTTTTACCTTTGTCTCTAAAGAGCAGTTTAGTTGTATTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR TCA 90 bp GATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTaGGAAGAAATTACTAAATACATCTTCTCCTGGGGTAAACAAGAC +
Preference number: 1 (lower is better)
Translates to: DSTLANMLVMNVVHT*EEITKYIFSWGKQD
Trigger: GTCTTGTTTACCCCAGGAGAAGATGTATTTAGTAATTTCTTCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR GCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTCAGAGGACTTCAGTCTaGGGGGCTGCCAATCCCAGC +
Preference number: 2 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPQRTSV*GAANPS
Trigger: GCTGGGATTGGCAGCCCCGCAGACTGAAGTCCTCTG...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
3UTR-3UTR GCA 90 bp AGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCACTTTCTCCTGCGTTCTTCCTCTaGTCTGGTCTTGACATACTG +
Preference number: 2 (lower is better)
Translates to: RSSLIDELSTALYRGSLSPAFFL*SGLDIL
Trigger: CAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGG...AGAAAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
3UTR-3UTR TCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTCTTCTGTTCGTCAGGTaGTTTTGCAATAGGTTGACT +
Preference number: 2 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLLLFVR*FCNRLT
Trigger: AGTCAACCTATTGCAAAATCACCTGACGAACAGAAG...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR CCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTACATCACCAAGTCACTaGCTTCCACACCTTATAAAA +
Preference number: 2 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSTSPSH*LPHLIK
Trigger: TTTTATAAGGTGTGGAAGCCAGTGACTTGGTGATGT...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR CCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTACATCACCAAGTCACTaGCTTCCACACCTTATAAAA +
Preference number: 2 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLTSPSH*LPHLIK
Trigger: TTTTATAAGGTGTGGAAGCCAGTGACTTGGTGATGT...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGGGGGTAAACAAGACTTaGCCTATAACTCCGGAGGGG +
Preference number: 2 (lower is better)
Translates to: ENKECLNQDSTLANMLVMGVNKT*PITPEG
Trigger: CCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACCCC...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTATTTGGATCTGTTCTGTaGATGAACAGAGGACTTCAG +
Preference number: 2 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLFGSVL*MNRGLQ
Trigger: CTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
3UTR-3UTR TCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAGAGACAGCCTATATTTaGGTATGTATGTCAGTCATG +
Preference number: 2 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLETAYI*VCMSVM
Trigger: CATGACTGACATACATACTCAAATATAGGCTGTCTC...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGTATGTATGTCAGTCATaGCACACAAAGAAAAGCATT +
Preference number: 2 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVYVCQS*HTKKSI
Trigger: AATGCTTTTCTTTGTGTGGCATGACTGACATACATA...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR GCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTTATGTATGTCAGTCATaGCACACAAAGAAAAGCATT +
Preference number: 2 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSYVCQS*HTKKSI
Trigger: AATGCTTTTCTTTGTGTGGCATGACTGACATACATA...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR TCA 90 bp TTCTCGATGTACTGTTTGAAAAGGTCTTCTCTCATTGATGAACTATCCACCGCTCTCTTTCTCCCATGTTaGAAAAGCAGACACCTTAGA +
Preference number: 2 (lower is better)
Translates to: FSMYCLKRSSLIDELSTALFLPC*KSRHLR
Trigger: TCTAAGGTGTCTGCTTTTTCAACATGGGAGAAAGAG...AGCGGTGGATAGTTCATCAATGAGAGAAGACCTTTTCAAACAGTACATCGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
3UTR-3UTR TCA 90 bp TTGAAAAGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCACTGGTCTTGACATACTaGTCAAACACCTGTTTTCTT +
Preference number: 2 (lower is better)
Translates to: LKRSSLIDELSTALYRGSLVLTY*SNTCFL
Trigger: AAGAAAACAGGTGTTTGATCAGTATGTCAAGACCAG...TGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCTTTTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
3UTR-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACTTGGATTAACTTTTTaGATCTGTTCTGTGGATGAA +
Preference number: 2 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLLGLTF*ICSVDE
Trigger: TTCATCCACAGAACAGATCCAAAAAGTTAATCCAAG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
3UTR-3UTR TCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCTTCTGTTCGTCAGGTaGTTTTGCAATAGGTTGACT +
Preference number: 2 (lower is better)
Translates to: ENKECLNQDSTLANMLVMLLFVR*FCNRLT
Trigger: AGTCAACCTATTGCAAAATCACCTGACGAACAGAAG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR TCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTGAGACAGCCTATATTTaGGTATGTATGTCAGTCATG +
Preference number: 2 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCETAYI*VCMSVM
Trigger: CATGACTGACATACATACTCAAATATAGGCTGTCTC...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR GCA 90 bp AAAAGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCACTTTCAAATACTATCTTGTaGAACTCTTTCTCCCATGTT +
Preference number: 2 (lower is better)
Translates to: KRSSLIDELSTALYRGSLSNTIL*NSFSHV
Trigger: AACATGGGAGAAAGAGTTGCACAAGATAGTATTTGA...AAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
3UTR GCA 72 bp TGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTaGGGGGCTGCCAATCCCAGCATCTTTCACAAGCTT +
Preference number: 3 (lower is better)
Translates to: WICSVDEQRTSV*GAANPSIFHKL
Trigger: AAGCTTGTGAAAGATGCTGGGATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
3UTR-3UTR CAA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGAACAAACTCTCCTGTCTaGCTGAGTAACACTGCTAGT +
Preference number: 3 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRTNSPV*LSNTAS
Trigger: ACTAGCAGTGTTACTCAGCAAGACAGGAGAGTTTGT...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR CCA 72 bp TTACTAAATACATCTTCTCCTGGGGTAAACAAGACTTaGCCTATAACTCCGGAGGGGAGAATCAAAGCACAT +
Preference number: 3 (lower is better)
Translates to: LLNTSSPGVNKT*PITPEGRIKAH
Trigger: ATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACCCCAGGAGAAGATGTATTTAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR CAA 90 bp TTGAAAAGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCATTTCTTTCTTTAGGATaGAGAAGCAAGTACCGAGGG +
Preference number: 3 (lower is better)
Translates to: LKRSSLIDELSTALYRGSFLSLG*RSKYRG
Trigger: CCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGAAA...TGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCTTTTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
3UTR-3UTR CAA 90 bp AGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCACTTTCTTTTGCTCCATCGAGATaGACTATCCAAGTGATGATT +
Preference number: 3 (lower is better)
Translates to: RSSLIDELSTALYRGSLSFAPSR*TIQVMI
Trigger: AATCATCACTTGGATAGTCAATCTCGATGGAGCAAA...AGAAAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
3UTR-3UTR CAA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAAGAGACAGCCTATATTaGAGTATGTATGTCAGTCAT +
Preference number: 3 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLRDSLY*SMYVSH
Trigger: ATGACTGACATACATACTCAAATATAGGCTGTCTCT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR-3UTR CAA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTACAAACTCTCCTGTCTaGCTGAGTAACACTGCTAGT +
Preference number: 3 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVTNSPV*LSNTAS
Trigger: ACTAGCAGTGTTACTCAGCAAGACAGGAGAGTTTGT...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTGCCTGGGCTTGGGCCTaGGCTTGTGCTTGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPAWAWA*ACACAW
Trigger: CCAAGCGCAAGCACAAGCCCAGGCCCAAGCCCAGGC...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCGCCTGGGCCTGGGCCTaGACCTGTGCTTGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCAWAWA*TCAWAA
Trigger: TGCAGCCCAAGCACAGGTTCAGGCCCAGGCCCAGGC...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGCCTGGGCCTGGGCCTaGACCTGTGCTTGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVAWAWA*TCAWAA
Trigger: TGCAGCCCAAGCACAGGTTCAGGCCCAGGCCCAGGC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCTTGGGCCTGGGCTTGTaGTTGCGCTTGGGCTTGGGC +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPILGLGL*LRLGLG
Trigger: GCCCAAGCCCAAGCGCAAGCACAAGCCCAGGCCCAA...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTCGCATCACGGCATTTaGTGGGGGAGCTGGGCCTCG +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPSHHGI*WGSWAS
Trigger: CGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACTGGGCCTGAGCCTGTaGTTGGGCCTGGGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLLGLSL*LGLGLG
Trigger: GCCCAGGCCCAGGCCCAAGCACAGGCTCAGGCCCAG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGCCTGGGCTTGGGCCTaGGCTTGTGCTTGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVAWAWA*ACACAW
Trigger: CCAAGCGCAAGCACAAGCCCAGGCCCAAGCCCAGGC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAAGCCTGGGCCTGGGCTTaGGCCTGGGCTTGTGCTTGC +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKAWAWA*AWACAC
Trigger: GCAAGCACAAGCCCAGGCCCAAGCCCAGGCCCAGGC...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCTGGGCCTGGGCTTaGGCCTGGGCTTGTGCTTGC +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAAWAWA*AWACAC
Trigger: GCAAGCACAAGCCCAGGCCCAAGCCCAGGCCCAGGC...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTTCGTCTAGTGGGCTCTaGTGCTGTGGGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSSSSGL*CCGRWG
Trigger: CCCCCACCTCCCACAGCATCAGAGCCCACTAGACGA...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTGGCTGGGGTACGGTTTaGACAGGTGTGGCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPGWGTV*TGVAVG
Trigger: TCCTACAGCCACACCTGTGCAAACCGTACCCCAGCC...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTCTCAAGGCCTGCTGTTaGGCCATCCTCAGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLLKACC*AILSSP
Trigger: GGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAG...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGCTCAAGGCCTGCTGTTaGGCCATCCTCAGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGLKACC*AILSSP
Trigger: GGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAG...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTTCGTCTAGTGGGCTCTaGTGCTGTGGGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLSSSGL*CCGRWG
Trigger: CCCCCACCTCCCACAGCATCAGAGCCCACTAGACGA...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTTTGGGCCTGGGCTTGTaGTTGCGCTTGGGCTTGGGC +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLLGLGL*LRLGLG
Trigger: GCCCAAGCCCAAGCGCAAGCACAAGCCCAGGCCCAA...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCTCCTCCCGTTTGTGCTaGTCTCTCTCCCGATCGATC +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPISSRLC*SLSRSI
Trigger: GATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGA...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGCCTCCTCCCGTTTGTaGTGCTCTCTCTCCCGATCG +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVASSRL*CSLSRS
Trigger: CGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTATTTGGTGGGGGAGCTaGGCCTCGGAACCTCAAGGC +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSIWWGS*ASEPQG
Trigger: GCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAAT...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGCCCCGGAGGCATTCCTaGTGGGAACATCATACCCGG +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVPRRHS*WEHHTR
Trigger: CCGGGTATGATGTTCCCACCAGGAATGCCTCCGGGG...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGAGCCTGGGCTTGGGCCTaGGCTTGTGCTTGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRAWAWA*ACACAW
Trigger: CCAAGCGCAAGCACAAGCCCAGGCCCAAGCCCAGGC...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTATGTGGGAGGTGGGGGTaGACCTCGGCGATCCAGGTC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLCGRWG*TSAIQV
Trigger: GACCTGGATCGCCGAGGTCCACCCCCACCTCCCACA...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTGCTACACCTGGAAGTaGGATTGGCATGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPCYTWK*DWHARQ
Trigger: CTGCCTGGCATGCCAATCCCACTTCCAGGTGTAGCA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGGCCTGGGCCTGGGCCTaGACCTGTGCTTGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQAWAWA*TCAWAA
Trigger: TGCAGCCCAAGCACAGGTTCAGGCCCAGGCCCAGGC...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAGCAGGTATTGCTGCTaGCGGCTGAGGTACCGAGTG +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVSRYCC*RLRYRV
Trigger: CACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCT...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGAAGTGGGATTGGCATaGCAGGCAGGGGCACACGGA +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGEVGLA*QAGAHG
Trigger: TCCGTGTGCCCCTGCCTGGCATGCCAATCCCACTTC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCGCCTCAATGCGGGCTTaGCTCTCCAGCTCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIASMRA*LSSSFS
Trigger: AGAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGC...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGCCGTTCTCGAAGGCTTaGCTCAATGCGGGCTTGCCT +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVPFSKA*LNAGLP
Trigger: AGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGG...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTCCCCGGAGGCATTCCTaGTGGGAACATCATACCCGG +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAPRRHS*WEHHTR
Trigger: CCGGGTATGATGTTCCCACCAGGAATGCCTCCGGGG...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGGACACTGCAGGTGCTaGGCTACTGGTGGTAGGGGT +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGGHCRC*ATGGRG
Trigger: ACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAAGGACACTGCAGGTGCTaGGCTACTGGTGGTAGGGGT +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKGHCRC*ATGGRG
Trigger: ACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCC...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGTCTGTGGGTGCGGCTaGGGTACGGTTTGCACAGGT +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAVCGCG*GTVCTG
Trigger: ACCTGTGCAAACCGTACCCCAGCCGCACCCACAGAC...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAAACCTGGAAGTGGGATTaGCATGCCAGGCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKTWKWD*HARQGH
Trigger: GTGCCCCTGCCTGGCATGCCAATCCCACTTCCAGGT...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCAGGAGTAGTAGCTACTaGCTTTGCCTTCTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIRSSSY*LCLLGS
Trigger: GCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCT...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGCCAGATTCCCAGCGGTaGTCTTTCCGGAGGGTCCTC +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGPDSQR*SFRRVL
Trigger: GAGGACCCTCCGGAAAGACCACCGCTGGGAATCTGG...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGGTAGATGTCGGAGTTaGCGTGGACACTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGGRCRS*RGHCRC
Trigger: GCACCTGCAGTGTCCACGTCAACTCCGACATCTACC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCCTAGCAGCATGTCCTTaGACTGCTTCATTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPILAACP*TASFEP
Trigger: AGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAG...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCTGGGCCTGAGCCTGTaGTTGGGCCTGGGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMLGLSL*LGLGLG
Trigger: GCCCAGGCCCAGGCCCAAGCACAGGCTCAGGCCCAG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTAGCGCCTACTGCTTGTaGTTGGACTTGTGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGASAYCL*LDLCLG
Trigger: GCCCAGGCACAAGTCCAAGCACAAGCAGTAGGCGCT...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACGTGGACACTGCAGGTaGTGGGCTACTGGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLRGHCR*WATGGR
Trigger: CCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACGTGGACACTGCAGGTaGTGGGCTACTGGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRRGHCR*WATGGR
Trigger: CCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGGCTGGGGTACGGTTTaGACAGGTGTGGCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLGWGTV*TGVAVG
Trigger: TCCTACAGCCACACCTGTGCAAACCGTACCCCAGCC...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGAGGTAACGTCTGTGGGTaGGGCTGGGGTACGGTTTGC +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRGNVCG*GWGTVC
Trigger: GCAAACCGTACCCCAGCCGCACCCACAGACGTTACC...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTCCGTTCTCGAAGGCTTaGCTCAATGCGGGCTTGCCT +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLPFSKA*LNAGLP
Trigger: AGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGG...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGAGCCTCCTCCCGTTTGTaGTGCTCTCTCTCCCGATCG +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRASSRL*CSLSRS
Trigger: CGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGC...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAATTTGGTGGGGGAGCTaGGCCTCGGAACCTCAAGGC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLIWWGS*ASEPQG
Trigger: GCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAAT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTCGGAGGCATTCCTGGTaGGAACATCATACCCGGAGG +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGARRHSW*EHHTRR
Trigger: CCTCCGGGTATGATGTTCCCACCAGGAATGCCTCCG...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTCGGAGGCATTCCTGGTaGGAACATCATACCCGGAGG +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLRRHSW*EHHTRR
Trigger: CCTCCGGGTATGATGTTCCCACCAGGAATGCCTCCG...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGCCTGGGCCTGGGCTTaGGCCTGGGCTTGTGCTTGC +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVAWAWA*AWACAC
Trigger: GCAAGCACAAGCCCAGGCCCAAGCCCAGGCCCAGGC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTAGTCTCCATTGGCAATaGCTCTTCAGAGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPSLHWQ*LFRGLL
Trigger: AAGGAGGCCTCTGAAGAGCCATTGCCAATGGAGACT...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACCAGATTCCCAGCGGTaGTCTTTCCGGAGGGTCCTC +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRPDSQR*SFRRVL
Trigger: GAGGACCCTCCGGAAAGACCACCGCTGGGAATCTGG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGCCATGGGTGGAGGCATaGAAGGTGGTCTCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGPWVEA*KVVSVG
Trigger: ACCTACAGAGACCACCTTTCATGCCTCCACCCATGG...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCTACTGTCTGTGCAACTaGAGTAGCAGTTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIYCLCN*SSSCRG
Trigger: ACCACGACAACTGCTACTTCAGTTGCACAGACAGTA...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTCTCTTTCTCCCATGTTaGAAAAGCAGACACCCCTCT +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPLFLPC*KSRHPS
Trigger: AGAGGGGTGTCTGCTTTTTCAACATGGGAGAAAGAG...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTATCTGGCTTGGTCCATaGAGATTCACGAGTCCGAGC +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSIWLGP*RFTSPS
Trigger: GCTCGGACTCGTGAATCTGCATGGACCAAGCCAGAT...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGAAGCGCCTACTGCTTGTaGTTGGACTTGTGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRSAYCL*LDLCLG
Trigger: GCCCAGGCACAAGTCCAAGCACAAGCAGTAGGCGCT...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGAAAGCAGGTATTGCTaGTGCCGGCTGAGGTACCGA +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGESRYC*CRLRYR
Trigger: TCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAATGGGAAAGCAGGTATTaGTGCTGCCGGCTGAGGTAC +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKWESRY*CCRLRY
Trigger: GTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCA...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTAGCATGTCCTTGAACTaGTTCATTCGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPSMSLN*FIRASR
Trigger: TCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCT...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCGGGCAGCTGACTATTTaGATCATTGCTACACCTGGA +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIGQLTI*IIATPG
Trigger: TCCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCC...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGCATAGCTCCCATGGGTaGAGGCATGAAAGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVHSSHG*RHERWS
Trigger: AGACCACCTTTCATGCCTCCACCCATGGGAGCTATG...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACCTCCAGAGGGACAATaGCCCTTTCTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLPPEGQ*PFLGQL
Trigger: AAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTGGGAGGTGGGGGTaGACCTCGGCGATCCAGGTC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCCGRWG*TSAIQV
Trigger: GACCTGGATCGCCGAGGTCCACCCCCACCTCCCACA...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTCAAGGCCTGCTGTTaGGCCATCCTCAGCTCCCCC +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCLKACC*AILSSP
Trigger: GGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAG...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACCATGGGTGGAGGCATaGAAGGTGGTCTCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLPWVEA*KVVSVG
Trigger: ACCTACAGAGACCACCTTTCATGCCTCCACCCATGG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTCTAGCAGCATGTCCTTaGACTGCTTCATTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSLAACP*TASFEP
Trigger: AGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAG...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTTGGGCCTGGGCTTGTaGTTGCGCTTGGGCTTGGGC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCLGLGL*LRLGLG
Trigger: GCCCAAGCCCAAGCGCAAGCACAAGCCCAGGCCCAA...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGGGTAACGTCTGTGGGTaGGGCTGGGGTACGGTTTGC +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQGNVCG*GWGTVC
Trigger: GCAAACCGTACCCCAGCCGCACCCACAGACGTTACC...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGAGAAAGCAGGTATTGCTaGTGCCGGCTGAGGTACCGA +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRESRYC*CRLRYR
Trigger: TCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTC...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGCGCTCATTGAGAACTaGCACTTTTGGATGGACAGC +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVALIEN*HFWMDS
Trigger: GCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCGC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCCCTGCGTTCTTCCTCTaGTCTGGTCTTGACATACTG +
Preference number: 4 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCPAFFL*SGLDIL
Trigger: CAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGG...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTATCCTCCCGTTTGTGCTaGTCTCTCTCCCGATCGATC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLSSRLC*SLSRSI
Trigger: GATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGA...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGGCCTCCTCCCGTTTGTaGTGCTCTCTCTCCCGATCG +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQASSRL*CSLSRS
Trigger: CGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGC...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTGGAGGAGGCATTGGTaGCATATTAGGATCAAAAGG +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPWRRHW*HIRIKR
Trigger: CCTTTTGATCCTAATATGCCACCAATGCCTCCTCCA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAATGGAGGTATTCCTCCTaGAGGAGGCATTGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKWRYSS*RRHWWH
Trigger: ATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCA...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCAACCTTAACTCCATCTaGCTTGGTCCATGCAGATTC +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPINLNSI*LGPCRF
Trigger: GAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTT...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTCTTGGGCTGCAAGCATaGGCGTCAGTTCTGATTGCT +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGALGLQA*ASVLIA
Trigger: AGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAG...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTCTGGTCTTGTGTTGTaGGTGTTGATACTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPSGLVL*VLILSV
Trigger: CACAGACAGTATCAACACCCACAACACAAGACCAGA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGCAGAACTTGGGGTCTaGTCTTGTGTTGTGGGTGTT +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVAELGV*SCVVGV
Trigger: AACACCCACAACACAAGACCAGACCCCAAGTTCTGC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTGCAGAACTTGGGGTCTaGTCTTGTGTTGTGGGTGTT +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSAELGV*SCVVGV
Trigger: AACACCCACAACACAAGACCAGACCCCAAGTTCTGC...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGACCTGGAAGTGGGATTaGCATGCCAGGCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQTWKWD*HARQGH
Trigger: GTGCCCCTGCCTGGCATGCCAATCCCACTTCCAGGT...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGCTCCTCAGTCTCCATTaGCAATGGCTCTTCAGAGGC +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGLLSLH*QWLFRG
Trigger: GCCTCTGAAGAGCCATTGCCAATGGAGACTGAGGAG...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTACTGCCACTTTTGGATaGACAGCATTGTCGGAGCCG +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLTATFG*TALSEP
Trigger: CGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGT...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTACTGCCACTTTTGGATaGACAGCATTGTCGGAGCCG +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGATATFG*TALSEP
Trigger: CGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGT...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCCTCTTTCTCCCATGTTaGAAAAGCAGACACCCCTCT +
Preference number: 4 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCLFLPC*KSRHPS
Trigger: AGAGGGGTGTCTGCTTTTTCAACATGGGAGAAAGAG...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAATCTGGCTTGGTCCATaGAGATTCACGAGTCCGAGC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLIWLGP*RFTSPS
Trigger: GCTCGGACTCGTGAATCTGCATGGACCAAGCCAGAT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCGTGGACACTGCAGGTaGTGGGCTACTGGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCRGHCR*WATGGR
Trigger: CCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACG...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGCAGGTATTGCTGCTaGCGGCTGAGGTACCGAGTG +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQSRYCC*RLRYRV
Trigger: CACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCT...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATGAAGTGGGATTGGCATaGCAGGCAGGGGCACACGGA +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHEVGLA*QAGAHG
Trigger: TCCGTGTGCCCCTGCCTGGCATGCCAATCCCACTTC...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAGCATGTCCTTGAACTaGTTCATTCGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVSMSLN*FIRASR
Trigger: TCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCT...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp CTTTTCCCTGCGTTCTTCCTCTGCTCTGGTCTTGACATACTGATCAAACACCTGAGCATGTCCTTGAACTaGTTCATTCGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: LFPAFFLCSGLDILIKHLSMSLN*FIRASR
Trigger: TCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCT...CAGGTGTTTGATCAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGGGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
CDS-3UTR GCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGCCTGCGTTCTTCCTCTaGTCTGGTCTTGACATACTG +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGPAFFL*SGLDIL
Trigger: CAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGG...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGCCGTTCTCGAAGGCTTaGCTCAATGCGGGCTTGCCT +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQPFSKA*LNAGLP
Trigger: AGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGG...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTATTTGGTGGGGGAGCTaGGCCTCGGAACCTCAAGGC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCIWWGS*ASEPQG
Trigger: GCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAAT...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGTCGCATCACGGCATTTaGTGGGGGAGCTGGGCCTCG +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMSHHGI*WGSWAS
Trigger: CGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGA...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGTGGGCCCATAGGTaGAGGTATTCCTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQRWAHR*RYSSWR
Trigger: CCTCCAGGAGGAATACCTCCACCTATGGGCCCACCT...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACATAGCTCCCATGGGTaGAGGCATGAAAGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLHSSHG*RHERWS
Trigger: AGACCACCTTTCATGCCTCCACCCATGGGAGCTATG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACTTGGGCTGCAAGCATaGGCGTCAGTTCTGATTGCT +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRLGLQA*ASVLIA
Trigger: AGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTGGACACTGCAGGTGCTaGGCTACTGGTGGTAGGGGT +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCGHCRC*ATGGRG
Trigger: ACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCC...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTGTGGGTGCGGCTaGGGTACGGTTTGCACAGGT +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVVCGCG*GTVCTG
Trigger: ACCTGTGCAAACCGTACCCCAGCCGCACCCACAGAC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTGTCTGTGGGTGCGGCTaGGGTACGGTTTGCACAGGT +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCVCGCG*GTVCTG
Trigger: ACCTGTGCAAACCGTACCCCAGCCGCACCCACAGAC...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTAGGCACCATTACTGGTaGGAAAGCAGGTATTGCTGC +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGARHHYW*ESRYCC
Trigger: GCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCT...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCAATAGCAACCTaGGGATGGATCATGGGTACT +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGAAIAT*GWIMGT
Trigger: AGTACCCATGATCCATCCCCAGGTTGCTATTGCAGC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACTCCTCAGTCTCCATTaGCAATGGCTCTTCAGAGGC +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRLLSLH*QWLFRG
Trigger: GCCTCTGAAGAGCCATTGCCAATGGAGACTGAGGAG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAAGGAGTAGTAGCTACTaGCTTTGCCTTCTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLRSSSY*LCLLGS
Trigger: GCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAACTGCCACTTTTGGATaGACAGCATTGTCGGAGCCG +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLTATFG*TALSEP
Trigger: CGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGAGAACTGCCACTTTTaGATGGACAGCATTGTCGGA +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVENCHF*MDSIVG
Trigger: TCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGCATCATTGCTACACCTaGAAGTGGGATTGGCATGCC +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGHHCYT*KWDWHA
Trigger: GGCATGCCAATCCCACTTCCAGGTGTAGCAATGATG...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGGTAGATGTCGGAGTTaGCGTGGACACTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVGRCRS*RGHCRC
Trigger: GCACCTGCAGTGTCCACGTCAACTCCGACATCTACC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATGGTAGATGTCGGAGTTaGCGTGGACACTGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHGRCRS*RGHCRC
Trigger: GCACCTGCAGTGTCCACGTCAACTCCGACATCTACC...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp AGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCACTTTCTCTAGCAGCATGTCCTTaGACTGCTTCATTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: RSSLIDELSTALYRGSLSLAACP*TASFEP
Trigger: AGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAG...AGAAAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
CDS-3UTR TCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTCTGGTCTTGACATACTaGTCAAACACCTGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPLVLTY*SNTCFL
Trigger: AAGAAAACAGGTGTTTGATCAGTATGTCAAGACCAG...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAACCTCTGCTCTGGTCTTaGCATACTGATCAAACACCT +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKPLLWS*HTDQTP
Trigger: AGGTGTTTGATCAGTATGTCAAGACCAGAGCAGAGG...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTGGCTGGGGTACGGTTTaGACAGGTGTGGCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCGWGTV*TGVAVG
Trigger: TCCTACAGCCACACCTGTGCAAACCGTACCCCAGCC...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTGGTAACGTCTGTGGGTaGGGCTGGGGTACGGTTTGC +
Preference number: 4 (lower is better)
Translates to: SLQEHPEREFCCLIENIGGNVCG*GWGTVC
Trigger: GCAAACCGTACCCCAGCCGCACCCACAGACGTTACC...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATAGCAGGTATTGCTGCTaGCGGCTGAGGTACCGAGTG +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHSRYCC*RLRYRV
Trigger: CACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCT...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGTGGGAAAGCAGGTATTaGTGCTGCCGGCTGAGGTAC +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQWESRY*CCRLRY
Trigger: GTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCA...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAAGTAGCTACTGGCTTTaGCTTCTGGGCAGCCTTTTC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLSSYWL*LLGSLF
Trigger: GAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAGCGCTCATTGAGAACTaGCACTTTTGGATGGACAGC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLALIEN*HFWMDS
Trigger: GCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCGC...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCAGAAGCTGCCTAAAGTaGTCCCTTTTCTTTTTGGTA +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIRSCLK*SLFFLV
Trigger: TACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCT...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGTGGAGGAGGCATTGGTaGCATATTAGGATCAAAAGG +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVWRRHW*HIRIKR
Trigger: CCTTTTGATCCTAATATGCCACCAATGCCTCCTCCA...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTAGGTGGGCCCATAGGTaGAGGTATTCCTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCRWAHR*RYSSWR
Trigger: CCTCCAGGAGGAATACCTCCACCTATGGGCCCACCT...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATAGGTGGGCCCATAGGTaGAGGTATTCCTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHRWAHR*RYSSWR
Trigger: CCTCCAGGAGGAATACCTCCACCTATGGGCCCACCT...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTCGGAGGCATTCCTGGTaGGAACATCATACCCGGAGG +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCRRHSW*EHHTRR
Trigger: CCTCCGGGTATGATGTTCCCACCAGGAATGCCTCCG...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCCCCGGAGGCATTCCTaGTGGGAACATCATACCCGG +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMPRRHS*WEHHTR
Trigger: CCGGGTATGATGTTCCCACCAGGAATGCCTCCGGGG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTAACCTTAACTCCATCTaGCTTGGTCCATGCAGATTC +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSNLNSI*LGPCRF
Trigger: GAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTT...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTCTGGTCTTGTGTTGTaGGTGTTGATACTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCSGLVL*VLILSV
Trigger: CACAGACAGTATCAACACCCACAACACAAGACCAGA...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGACCTGGAAGTGGGATTaGCATGCCAGGCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMTWKWD*HARQGH
Trigger: GTGCCCCTGCCTGGCATGCCAATCCCACTTCCAGGT...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTCCAAACAACACACCATaGAGTACCAGGAATAGGAGT +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSPNNTP*STRNRS
Trigger: ACTCCTATTCCTGGTACTCCATGGTGTGTTGTTTGG...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGAGAACTGCCACTTTTaGATGGACAGCATTGTCGGA +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGENCHF*MDSIVG
Trigger: TCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTCCTCCAGAGGGACAATaGCCCTTTCTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVPPEGQ*PFLGQL
Trigger: AAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGG...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTCCTCCAGAGGGACAATaGCCCTTTCTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCPPEGQ*PFLGQL
Trigger: AAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGG...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTTCTTTCTTTAGGATTGAGAAGCAAGTACCGAGGGTCAAATACTATCTTGTGCCCTCCAGAGGGACAATaGCCCTTTCTCGGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: FLSLGLRSKYRGSNTILCPPEGQ*PFLGQL
Trigger: AAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGG...GCACAAGATAGTATTTGACCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
CDS-3UTR CCA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTCCAGATTCCCAGCGGTaGTCTTTCCGGAGGGTCCTC +
Preference number: 4 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIPDSQR*SFRRVL
Trigger: GAGGACCCTCCGGAAAGACCACCGCTGGGAATCTGG...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAACATGGGCGTCAGTTCTaGTTGCTGAATAACCTTAAC +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKHGRQF*LLNNLN
Trigger: GTTAAGGTTATTCAGCAATCAGAACTGACGCCCATG...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCGGCAGCTTCTTTCTCTaGATCAATGTCTTTATTATC +
Preference number: 4 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIGSFFL*INVFII
Trigger: GATAATAAAGACATTGATTCAGAGAAAGAAGCTGCC...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTTACATACGGGCAGCTaGCTATTTGCATCATTGCTA +
Preference number: 4 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCLHTGS*LFASLL
Trigger: TAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAA...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAGCGCCTACTGCTTGTaGTTGGACTTGTGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMSAYCL*LDLCLG
Trigger: GCCCAGGCACAAGTCCAAGCACAAGCAGTAGGCGCT...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGAAAGCAGGTATTGCTaGTGCCGGCTGAGGTACCGA +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVESRYC*CRLRYR
Trigger: TCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATTGGGAAAGCAGGTATTaGTGCTGCCGGCTGAGGTAC +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHWESRY*CCRLRY
Trigger: GTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCA...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAAGCATGTCCTTGAACTaGTTCATTCGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLSMSLN*FIRASR
Trigger: TCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCT...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGTGGAGGTATTCCTCCTaGAGGAGGCATTGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQWRYSS*RRHWWH
Trigger: ATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCA...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGCATAGCTCCCATGGGTaGAGGCATGAAAGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQHSSHG*RHERWS
Trigger: AGACCACCTTTCATGCCTCCACCCATGGGAGCTATG...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAAATAGCAACCTGGGGATaGATCATGGGTACTATAGGA +
Preference number: 4 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKIATWG*IMGTIG
Trigger: TCCTATAGTACCCATGATCCATCCCCAGGTTGCTAT...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTTGCTACACCTGGAAGTaGGATTGGCATGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVCYTWK*DWHARQ
Trigger: CTGCCTGGCATGCCAATCCCACTTCCAGGTGTAGCA...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACATGGGCGTCAGTTCTaGTTGCTGAATAACCTTAAC +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLHGRQF*LLNNLN
Trigger: GTTAAGGTTATTCAGCAATCAGAACTGACGCCCATG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTCTGGTCTTGACATACTaGTCAAACACCTGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSLVLTY*SNTCFL
Trigger: AAGAAAACAGGTGTTTGATCAGTATGTCAAGACCAG...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCCTGGTCTTGACATACTaGTCAAACACCTGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCLVLTY*SNTCFL
Trigger: AAGAAAACAGGTGTTTGATCAGTATGTCAAGACCAG...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp AAAAGGTCTTCTCTCATTGATGAACTATCCACCGCTTTATATCGGGGGTCACTTCCAAAGATTGTTTTCTaGCCCCTCTCTCTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: KRSSLIDELSTALYRGSLPKIVF*PLSLAA
Trigger: TGCTGCTAGAGAGAGGGGTCAGAAAACAATCTTTGG...AAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAGAGAAGACCTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
CDS-3UTR GCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTATCTGGCTTGGTCCATaGAGATTCACGAGTCCGAGC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCIWLGP*RFTSPS
Trigger: GCTCGGACTCGTGAATCTGCATGGACCAAGCCAGAT...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGGCGCTCATTGAGAACTaGCACTTTTGGATGGACAGC +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQALIEN*HFWMDS
Trigger: GCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCGC...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGCCTCAATGCGGGCTTaGCTCTCCAGCTCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVASMRA*LSSSFS
Trigger: AGAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGACTATTTGCATCATTaGTACACCTGGAAGTGGGAT +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGADYLHH*YTWKWD
Trigger: ATCCCACTTCCAGGTGTAGCAATGATGCAAATAGTC...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGGCAGAACTTGGGGTCTaGTCTTGTGTTGTGGGTGTT +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQAELGV*SCVVGV
Trigger: AACACCCACAACACAAGACCAGACCCCAAGTTCTGC...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTCTCCTCAGTCTCCATTaGCAATGGCTCTTCAGAGGC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCLLSLH*QWLFRG
Trigger: GCCTCTGAAGAGCCATTGCCAATGGAGACTGAGGAG...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTAGGAGTAGTAGCTACTaGCTTTGCCTTCTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCRSSSY*LCLLGS
Trigger: GCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCT...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACCAAACAACACACCATaGAGTACCAGGAATAGGAGT +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLPNNTP*STRNRS
Trigger: ACTCCTATTCCTGGTACTCCATGGTGTGTTGTTTGG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTCTGAGTCTAAATTCTTaGCTATTTTCTCGATGTACT +
Preference number: 4 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPLSLNS*LFSRCT
Trigger: AGTACATCGAGAAAATAGCCAAGAATTTAGACTCAG...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGTCAGTTCTGATTGCTaGATAACCTTAACTCCATCT +
Preference number: 4 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAVSSDC*ITLTPS
Trigger: AGATGGAGTTAAGGTTATTCAGCAATCAGAACTGAC...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR TCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGGCAGCTTCTTTCTCTaGATCAATGTCTTTATTATC +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVGSFFL*INVFII
Trigger: GATAATAAAGACATTGATTCAGAGAAAGAAGCTGCC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTGGCAGCTTCTTTCTCTaGATCAATGTCTTTATTATC +
Preference number: 4 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSGSFFL*INVFII
Trigger: GATAATAAAGACATTGATTCAGAGAAAGAAGCTGCC...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATCTAGCAGCATGTCCTTaGACTGCTTCATTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHLAACP*TASFEP
Trigger: AGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAG...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGCCTCTGCTCTGGTCTTaGCATACTGATCAAACACCT +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQPLLWS*HTDQTP
Trigger: AGGTGTTTGATCAGTATGTCAAGACCAGAGCAGAGG...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATAGTAGCTACTGGCTTTaGCTTCTGGGCAGCCTTTTC +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHSSYWL*LLGSLF
Trigger: GAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACT...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTAGTAGCTACTGGCTTTaGCTTCTGGGCAGCCTTTTC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCSSYWL*LLGSLF
Trigger: GAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACT...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTTGGAGGTATTCCTCCTaGAGGAGGCATTGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SLQEHPEREFCCLIENIGWRYSS*RRHWWH
Trigger: ATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCA...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCTTGGGCTGCAAGCATaGGCGTCAGTTCTGATTGCT +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMLGLQA*ASVLIA
Trigger: AGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTAGGCACCATTACTGGTaGGAAAGCAGGTATTGCTGC +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCRHHYW*ESRYCC
Trigger: GCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCT...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTGCTGCAATAGCAACCTaGGGATGGATCATGGGTACT +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCAAIAT*GWIMGT
Trigger: AGTACCCATGATCCATCCCCAGGTTGCTATTGCAGC...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTAGTCTCCATTGGCAATaGCTCTTCAGAGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCSLHWQ*LFRGLL
Trigger: AAGGAGGCCTCTGAAGAGCCATTGCCAATGGAGACT...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
3UTR CAA 72 bp ATTACTAAATACATCTTCTCCTGGGGTAAACAAGACTaGGCCTATAACTCCGGAGGGGAGAATCAAAGCACA +
Preference number: 4 (lower is better)
Translates to: ITKYIFSWGKQD*AYNSGGENQST
Trigger: TGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACCCCAGGAGAAGATGTATTTAGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTACTGTCTGTGCAACTaGAGTAGCAGTTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCYCLCN*SSSCRG
Trigger: ACCACGACAACTGCTACTTCAGTTGCACAGACAGTA...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTCTCTTTCTCCCATGTTaGAAAAGCAGACACCCCTCT +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVLFLPC*KSRHPS
Trigger: AGAGGGGTGTCTGCTTTTTCAACATGGGAGAAAGAG...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTCCTCTGCTCTGGTCTTaGCATACTGATCAAACACCT +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCPLLWS*HTDQTP
Trigger: AGGTGTTTGATCAGTATGTCAAGACCAGAGCAGAGG...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAGTACGTCTTCCCATCTaGTGTTTTATATTCAGTCCA +
Preference number: 4 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLVRLPI*CFIFSP
Trigger: TGGACTGAATATAAAACAGCAGATGGGAAGACGTAC...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCCTGCGTTCTTCCTCTaGTCTGGTCTTGACATACTG +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMPAFFL*SGLDIL
Trigger: CAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGCTTTGTCTTTTACTTTaGTCCATCGAGATTGACTAT +
Preference number: 4 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVLCLLL*SIEIDY
Trigger: ATAGTCAATCTCGATGGAGCAAAGTAAAAGACAAAG...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAGGCACCATTACTGGTaGGAAAGCAGGTATTGCTGC +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMRHHYW*ESRYCC
Trigger: GCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCT...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGATAGCAACCTGGGGATaGATCATGGGTACTATAGGA +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQIATWG*IMGTIG
Trigger: TCCTATAGTACCCATGATCCATCCCCAGGTTGCTAT...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CCA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTGCTGCAATAGCAACCTaGGGATGGATCATGGGTACT +
Preference number: 4 (lower is better)
Translates to: SLQEHPEREFCCLIENIGAAIAT*GWIMGT
Trigger: AGTACCCATGATCCATCCCCAGGTTGCTATTGCAGC...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTAGTCTCCATTGGCAATaGCTCTTCAGAGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSISLHWQ*LFRGLL
Trigger: AAGGAGGCCTCTGAAGAGCCATTGCCAATGGAGACT...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCATCATTGCTACACCTaGAAGTGGGATTGGCATGCC +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMHHCYT*KWDWHA
Trigger: GGCATGCCAATCCCACTTCCAGGTGTAGCAATGATG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTTACTGTCTGTGCAACTaGAGTAGCAGTTGTCGTGGT +
Preference number: 4 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIYCLCN*SSSCRG
Trigger: ACCACGACAACTGCTACTTCAGTTGCACAGACAGTA...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGTTACATACGGGCAGCTaGCTATTTGCATCATTGCTA +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQLHTGS*LFASLL
Trigger: TAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAA...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGTCAAATACTATCTTGTaGAACTCTTTCTCCCATGTT +
Preference number: 4 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGSNTIL*NSFSHV
Trigger: AACATGGGAGAAAGAGTTGCACAAGATAGTATTTGA...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTGGGCAGCTGACTATTTaGATCATTGCTACACCTGGA +
Preference number: 4 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIGQLTI*IIATPG
Trigger: TCCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCC...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTTGGAGGAGGCATTGGTaGCATATTAGGATCAAAAGG +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCWRRHW*HIRIKR
Trigger: CCTTTTGATCCTAATATGCCACCAATGCCTCCTCCA...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTAACCTTAACTCCATCTaGCTTGGTCCATGCAGATTC +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVNLNSI*LGPCRF
Trigger: GAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTT...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTCTGGTCTTGTGTTGTaGGTGTTGATACTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCSGLVL*VLILSV
Trigger: CACAGACAGTATCAACACCCACAACACAAGACCAGA...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTATAGCAACCTGGGGATaGATCATGGGTACTATAGGA +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCIATWG*IMGTIG
Trigger: TCCTATAGTACCCATGATCCATCCCCAGGTTGCTAT...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCCAAACAACACACCATaGAGTACCAGGAATAGGAGT +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCPNNTP*STRNRS
Trigger: ACTCCTATTCCTGGTACTCCATGGTGTGTTGTTTGG...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTGAGAACTGCCACTTTTaGATGGACAGCATTGTCGGA +
Preference number: 4 (lower is better)
Translates to: SLQEHPEREFCCLIENIGENCHF*MDSIVG
Trigger: TCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTC...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTCTGAGTCTAAATTCTTaGCTATTTTCTCGATGTACT +
Preference number: 4 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLLSLNS*LFSRCT
Trigger: AGTACATCGAGAAAATAGCCAAGAATTTAGACTCAG...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCATGGGCGTCAGTTCTaGTTGCTGAATAACCTTAAC +
Preference number: 4 (lower is better)
Translates to: ENKECLNQDSTLANMLVMHGRQF*LLNNLN
Trigger: GTTAAGGTTATTCAGCAATCAGAACTGACGCCCATG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGTCTCGATGTACTGTTTaGAAAGGTCTTCTCTCATTG +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQSRCTV*KGLLSL
Trigger: CAATGAGAGAAGACCTTTTCAAACAGTACATCGAGA...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACTTTGTCTTTTACTTTaGTCCATCGAGATTGACTAT +
Preference number: 4 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRLCLLL*SIEIDY
Trigger: ATAGTCAATCTCGATGGAGCAAAGTAAAAGACAAAG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATGTCAGTTCTGATTGCTaGATAACCTTAACTCCATCT +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHVSSDC*ITLTPS
Trigger: AGATGGAGTTAAGGTTATTCAGCAATCAGAACTGAC...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTGTCAGTTCTGATTGCTaGATAACCTTAACTCCATCT +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCVSSDC*ITLTPS
Trigger: AGATGGAGTTAAGGTTATTCAGCAATCAGAACTGAC...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTTCTCGATGTACTGTTTaGAAAGGTCTTCTCTCATTG +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCSRCTV*KGLLSL
Trigger: CAATGAGAGAAGACCTTTTCAAACAGTACATCGAGA...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATGTACGTCTTCCCATCTaGTGTTTTATATTCAGTCCA +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHVRLPI*CFIFSP
Trigger: TGGACTGAATATAAAACAGCAGATGGGAAGACGTAC...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTGTACGTCTTCCCATCTaGTGTTTTATATTCAGTCCA +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCVRLPI*CFIFSP
Trigger: TGGACTGAATATAAAACAGCAGATGGGAAGACGTAC...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATAGAAGCTGCCTAAAGTaGTCCCTTTTCTTTTTGGTA +
Preference number: 4 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHRSCLK*SLFFLV
Trigger: TACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCT...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTGACTATTTGCATCATTaGTACACCTGGAAGTGGGAT +
Preference number: 4 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIDYLHH*YTWKWD
Trigger: ATCCCACTTCCAGGTGTAGCAATGATGCAAATAGTC...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR TCA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTTCTCGATGTACTGTTTaGAAAGGTCTTCTCTCATTG +
Preference number: 4 (lower is better)
Translates to: SLQEHPEREFCCLIENIGSRCTV*KGLLSL
Trigger: CAATGAGAGAAGACCTTTTCAAACAGTACATCGAGA...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGCTTTGTCTTTTACTTTaGTCCATCGAGATTGACTAT +
Preference number: 4 (lower is better)
Translates to: GADQILGLTFWICSVDEQLCLLL*SIEIDY
Trigger: ATAGTCAATCTCGATGGAGCAAAGTAAAAGACAAAG...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR GCA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTAGAAGCTGCCTAAAGTaGTCCCTTTTCTTTTTGGTA +
Preference number: 4 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIRSCLK*SLFFLV
Trigger: TACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCT...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTTCAAATACTATCTTGTaGAACTCTTTCTCCCATGTT +
Preference number: 4 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCSNTIL*NSFSHV
Trigger: AACATGGGAGAAAGAGTTGCACAAGATAGTATTTGA...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR GCA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTCAAATACTATCTTGTaGAACTCTTTCTCCCATGTT +
Preference number: 4 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCSNTIL*NSFSHV
Trigger: AACATGGGAGAAAGAGTTGCACAAGATAGTATTTGA...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CCA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTCTGAGTCTAAATTCTTaGCTATTTTCTCGATGTACT +
Preference number: 4 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVLSLNS*LFSRCT
Trigger: AGTACATCGAGAAAATAGCCAAGAATTTAGACTCAG...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS CCA 90 bp CATGAGAGGTGGCGGGCCTCGCATCACGGCATTTGGTGGGGGAGCTaGGCCTCGGAACCTCAAGGCCTGCTGTTGAGCCATCCTCAGCTC +
Preference number: 5 (lower is better)
Translates to: HERWRASHHGIWWGS*ASEPQGLLLSHPQL
Trigger: GAGCTGAGGATGGCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 90 bp AGGAGGTGGTCTCATGAGAGGTGGCGGGCCTCGCATCACGGCATTTaGTGGGGGAGCTGGGCCTCGGAACCTCAAGGCCTGCTGTTGAGC +
Preference number: 5 (lower is better)
Translates to: RRWSHERWRASHHGI*WGSWASEPQGLLLS
Trigger: GCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATGAGACCACCTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 90 bp AGGGCCTCTCATCATGCCGAAAGGAGGAGGTGGTCTCATGAGAGGTaGCGGGCCTCGCATCACGGCATTTGGTGGGGGAGCTGGGCCTCG +
Preference number: 5 (lower is better)
Translates to: RASHHAERRRWSHER*RASHHGIWWGSWAS
Trigger: CGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATGAGACCACCTCCTCCTTTCGGCATGATGAGAGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS TCA 90 bp GTGGAGGAGGGCCTCTCATCATGCCGAAAGGAGGAGGTGGTCTCATaGGAGGTGGCGGGCCTCGCATCACGGCATTTGGTGGGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: VEEGLSSCRKEEVVS*EVAGLASRHLVGEL
Trigger: CAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATGAGACCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 90 bp AGGTGGTCTCATGAGAGGTGGCGGGCCTCGCATCACGGCATTTGGTaGGGGAGCTGGGCCTCGGAACCTCAAGGCCTGCTGTTGAGCCAT +
Preference number: 5 (lower is better)
Translates to: RWSHERWRASHHGIW*GSWASEPQGLLLSH
Trigger: ATGGCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATGAGACCACCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 90 bp AGGCAGTGCTGGAGCACCAGGAGCAGTCCCCGGAGGCATTCCTGGTaGGAACATCATACCCGGAGGAGGAGGCATAGCTCCCATGGGTGG +
Preference number: 5 (lower is better)
Translates to: RQCWSTRSSPRRHSW*EHHTRRRRHSSHGW
Trigger: CCACCCATGGGAGCTATGCCTCCTCCTCCGGGTATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS GCA 90 bp GGAACAGCAGGAGGTAACGTCTGTGGGTGCGGCTGGGGTACGGTTTaGACAGGTGTGGCTGTAGGAGCAGGAGCTGAAACACTAACTGTA +
Preference number: 5 (lower is better)
Translates to: GTAGGNVCGCGWGTV*TGVAVGAGAETLTV
Trigger: TACAGTTAGTGTTTCAGCTCCTGCTCCTACAGCCACACCTGTGCAAACCGTACCCCAGCCGCACCCACAGACGTTACCTCCTGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCCCTCAAGGCCTGCTGTaGAGCCATCCTCAGCTCCCC +
Preference number: 5 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIPQGLL*SHPQLP
Trigger: GGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGG...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCCCCGTTCTCGAAGGCTaGCCTCAATGCGGGCTTGCC +
Preference number: 5 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIPVLEG*PQCGLA
Trigger: GGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGG...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS TCA 90 bp TCTCTCTCCCGATCGATCTCTTTCGTCTGCTCAGAGCGCGCCTTCTaGACTTCTCTTTCCCGTTCTCGAAGGCTTGCCTCAATGCGGGCT +
Preference number: 5 (lower is better)
Translates to: SLSRSISFVCSERAF*TSLSRSRRLASMRA
Trigger: AGCCCGCATTGAGGCAAGCCTTCGAGAACGGGAAAGAGAAGTTCAGAAGGCGCGCTCTGAGCAGACGAAAGAGATCGATCGGGAGAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGCTCGCATCACGGCATTaGGTGGGGGAGCTGGGCCTC +
Preference number: 5 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVLASRH*VGELGL
Trigger: GAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAG...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTCGCTTGGGCTTGGGCTaGAGCCTGAGCCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLRLGLG*SLSLGL
Trigger: CAGGCCCAGGCTCAGGCTCAAGCCCAAGCCCAAGCG...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCCCTCAAGGCCTGCTGTaGAGCCATCCTCAGCTCCCC +
Preference number: 5 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCPQGLL*SHPQLP
Trigger: GGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGG...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTTGCTTGCGCTTGGGCTaGGGCTTGAGCCTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSCLRLG*GLSLSL
Trigger: CAGGCTCAGGCTCAAGCCCAAGCCCAAGCGCAAGCA...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS TCA 90 bp CTGGGCCTGAACCTGTGCTTGGGCTGCAAGCATGGGCGTCAGTTCTaGTTGCTGAATAACCTTAACTCCATCTGGCTTGGTCCATGCAGA +
Preference number: 5 (lower is better)
Translates to: LGLNLCLGCKHGRQF*LLNNLNSIWLGPCR
Trigger: TCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAGCACAGGTTCAGGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACTCGCATCACGGCATTaGGTGGGGGAGCTGGGCCTC +
Preference number: 5 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLLASRH*VGELGL
Trigger: GAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGGCCTGAACCTGTGCTaGGGCTGCAAGCATGGGCGT +
Preference number: 5 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAGLNLC*GCKHGR
Trigger: ACGCCCATGCTTGCAGCCCAAGCACAGGTTCAGGCC...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAAGGCCTGAACCTGTGCTaGGGCTGCAAGCATGGGCGT +
Preference number: 5 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKGLNLC*GCKHGR
Trigger: ACGCCCATGCTTGCAGCCCAAGCACAGGTTCAGGCC...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAATGCTTGCGCTTGGGCTaGGGCTTGAGCCTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKCLRLG*GLSLSL
Trigger: CAGGCTCAGGCTCAAGCCCAAGCCCAAGCGCAAGCA...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTGCCTCAATGCGGGCTaGCCTCTCCAGCTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPCLNAG*PLQLFF
Trigger: GAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGCA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACCTCAAGGCCTGCTGTaGAGCCATCCTCAGCTCCCC +
Preference number: 5 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRPQGLL*SHPQLP
Trigger: GGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGCGCTTGGGCTTGGGCTaGAGCCTGAGCCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: GADQILGLTFWICSVDEQRLGLG*SLSLGL
Trigger: CAGGCCCAGGCTCAGGCTCAAGCCCAAGCCCAAGCG...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGGTGGGAAAGCAGGTATaGCTGCTGCCGGCTGAGGTA +
Preference number: 5 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVVGKQV*LLPAEV
Trigger: TACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCAC...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACCCGTTCTCGAAGGCTaGCCTCAATGCGGGCTTGCC +
Preference number: 5 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRPVLEG*PQCGLA
Trigger: GGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTAGCCTACTGCTTGTGCTaGGACTTGTGCCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLAYCLC*DLCLGL
Trigger: CAGGCCCAGGCACAAGTCCAAGCACAAGCAGTAGGC...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGTGGGAAAGCAGGTATaGCTGCTGCCGGCTGAGGTA +
Preference number: 5 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAVGKQV*LLPAEV
Trigger: TACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCAC...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTCCTCCTCAGTCTCCATaGGCAATGGCTCTTCAGAGG +
Preference number: 5 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSPPQSP*AMALQR
Trigger: CCTCTGAAGAGCCATTGCCAATGGAGACTGAGGAGG...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTTTGGATGGACAGCATaGTCGGAGCCGGGTGCCTTA +
Preference number: 5 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCFGWTA*SEPGAL
Trigger: TAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAA...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGCCTCAATGCGGGCTaGCCTCTCCAGCTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: FPGVCGISKLLPQTLLSCCLNAG*PLQLFF
Trigger: GAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGCA...GCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTATAGCCTCCTCCCGTTaGTGCTGCTCTCTCTCCCGA +
Preference number: 5 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAIASSR*CCSLSR
Trigger: TCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTAT...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGCGCTTGGGCTTGGGCTaGAGCCTGAGCCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: ENKECLNQDSTLANMLVMRLGLG*SLSLGL
Trigger: CAGGCCCAGGCTCAGGCTCAAGCCCAAGCCCAAGCG...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGTGCTTGCGCTTGGGCTaGGGCTTGAGCCTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: GADQILGLTFWICSVDEQCLRLG*GLSLSL
Trigger: CAGGCTCAGGCTCAAGCCCAAGCCCAAGCGCAAGCA...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATGGCCTGAACCTGTGCTaGGGCTGCAAGCATGGGCGT +
Preference number: 5 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHGLNLC*GCKHGR
Trigger: ACGCCCATGCTTGCAGCCCAAGCACAGGTTCAGGCC...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGGGGAGCGCCTACTGCTaGTGCTTGGACTTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: GADQILGLTFWICSVDEQGSAYC*CLDLCL
Trigger: CAGGCACAAGTCCAAGCACAAGCAGTAGGCGCTCCC...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGACCTCCTCAGTCTCCATaGGCAATGGCTCTTCAGAGG +
Preference number: 5 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRPPQSP*AMALQR
Trigger: CCTCTGAAGAGCCATTGCCAATGGAGACTGAGGAGG...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTACCTCCTCAGTCTCCATaGGCAATGGCTCTTCAGAGG +
Preference number: 5 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLPPQSP*AMALQR
Trigger: CCTCTGAAGAGCCATTGCCAATGGAGACTGAGGAGG...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTATTTGGATGGACAGCATaGTCGGAGCCGGGTGCCTTA +
Preference number: 5 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLFGWTA*SEPGAL
Trigger: TAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAA...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTTCTAGCAGCATGTCCTaGAACTGCTTCATTCGAGCC +
Preference number: 5 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSSSSMS*NCFIRA
Trigger: GGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGA...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp CCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATACCTGAGATGCCTCAATGCGGGCTaGCCTCTCCAGCTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: PGFHSGQHVSYECGSYLRCLNAG*PLQLFF
Trigger: GAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGCA...TCTCAGGTATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATCCCGTTCTCGAAGGCTaGCCTCAATGCGGGCTTGCC +
Preference number: 5 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHPVLEG*PQCGLA
Trigger: GGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGG...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGGTAGTACACCGGTCTaGGTGGTAGCGACTGTCTTT +
Preference number: 5 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGGSTPV*VVATVF
Trigger: AAAGACAGTCGCTACCACCAAGACCGGTGTACTACC...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGCCTACTGCTTGTGCTaGGACTTGTGCCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVAYCLC*DLCLGL
Trigger: CAGGCCCAGGCACAAGTCCAAGCACAAGCAGTAGGC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGGGAGCGCCTACTGCTaGTGCTTGGACTTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVGSAYC*CLDLCL
Trigger: CAGGCACAAGTCCAAGCACAAGCAGTAGGCGCTCCC...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCAAAGGTCTTCTCTCATaGATGAACTATCCACCGCTT +
Preference number: 5 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPIKGLLS*MNYPPL
Trigger: AAGCGGTGGATAGTTCATCAATGAGAGAAGACCTTT...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS CCA 90 bp AACTCTTGTTCTTCTTTAATTGCGCTCATTGAGAACTGCCACTTTTaGATGGACAGCATTGTCGGAGCCGGGTGCCTTAGCTTCTTCATG +
Preference number: 5 (lower is better)
Translates to: NSCSSLIALIENCHF*MDSIVGAGCLSFFM
Trigger: CATGAAGAAGCTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCGCAATTAAAGAAGAACAAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGTTAACTCCATCTGGCTaGGTCCATGCAGATTCACGA +
Preference number: 5 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGLTPSG*VHADSR
Trigger: TCGTGAATCTGCATGGACCAAGCCAGATGGAGTTAA...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTGCCTACTGCTTGTGCTaGGACTTGTGCCTGGGCCTG +
Preference number: 5 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIAYCLC*DLCLGL
Trigger: CAGGCCCAGGCACAAGTCCAAGCACAAGCAGTAGGC...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTGGGAGCGCCTACTGCTaGTGCTTGGACTTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: SLQEHPEREFCCLIENIGGSAYC*CLDLCL
Trigger: CAGGCACAAGTCCAAGCACAAGCAGTAGGCGCTCCC...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATGTGGGAAAGCAGGTATaGCTGCTGCCGGCTGAGGTA +
Preference number: 5 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHVGKQV*LLPAEV
Trigger: TACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCAC...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCCTTATGAGGGGGCTCTaGAATAATTTTGTCAACATC +
Preference number: 5 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPILMRGL*NNFVNI
Trigger: GATGTTGACAAAATTATTCAAGAGCCCCCTCATAAG...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp ATCTGGCTCATGCAAGCATTTTCAATTAACAGCGAGCCCGTGGAAGGGTATTTATCTAGCAGCATGTCCTaGAACTGCTTCATTCGAGCC +
Preference number: 5 (lower is better)
Translates to: IWLMQAFSINSEPVEGYLSSSMS*NCFIRA
Trigger: GGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGA...TAAATACCCTTCCACGGGCTCGCTGTTAATTGAAAATGCTTGCATGAGCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTATAGCCTCCTCCCGTTaGTGCTGCTCTCTCTCCCGA +
Preference number: 5 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCIASSR*CCSLSR
Trigger: TCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTAT...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTGCTCCCTTTTCTTTTaGGTAAGCGCTTCAATATGT +
Preference number: 5 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPCSLFF*VSASIC
Trigger: ACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATTTTGGATGGACAGCATaGTCGGAGCCGGGTGCCTTA +
Preference number: 5 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHFGWTA*SEPGAL
Trigger: TAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAA...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTAAAGGTCTTCTCTCATaGATGAACTATCCACCGCTT +
Preference number: 5 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSKGLLS*MNYPPL
Trigger: AAGCGGTGGATAGTTCATCAATGAGAGAAGACCTTT...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GACCTCGGCGATCCAGGTCATCAACATAGGCCACAATTAGTTTCCTCCTCTCCTTTCTCGATGTACTGTTaGAAAAGGTCTTCTCTCATT +
Preference number: 5 (lower is better)
Translates to: DLGDPGHQHRPQLVSSSPFSMYC*KRSSLI
Trigger: AATGAGAGAAGACCTTTTCAAACAGTACATCGAGAA...AGGAGAGGAGGAAACTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp TTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTGCCAATCTCTGAGTCTAAATTCTaGGCTATTTTCTCGATGTAC +
Preference number: 5 (lower is better)
Translates to: FGSVLWMNRGLQSAGLPISESKF*AIFSMY
Trigger: GTACATCGAGAAAATAGCCAAGAATTTAGACTCAGA...GATTGGCAGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp AGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTAATTGAGAATATTGGTATAGCCTCCTCCCGTTaGTGCTGCTCTCTCTCCCGA +
Preference number: 5 (lower is better)
Translates to: SLQEHPEREFCCLIENIGIASSR*CCSLSR
Trigger: TCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTAT...ACCAATATTCTCAATTAGACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGTGCTGATCAGATTCTTGGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGCGGGCAGCTGACTATTaGCATCATTGCTACACCTGG +
Preference number: 5 (lower is better)
Translates to: GADQILGLTFWICSVDEQRAADY*HHCYTW
Trigger: CCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCG...CTGTTCATCCACAGAACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp ACTATCCACCGCTTTATATCGGGGGTCACTTTCTACTTTGTCTTTTACTTTGCTTCTAGCAGCATGTCCTaGAACTGCTTCATTCGAGCC +
Preference number: 5 (lower is better)
Translates to: TIHRFISGVTFYFVFYFASSSMS*NCFIRA
Trigger: GGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGA...AGCAAAGTAAAAGACAAAGTAGAAAGTGACCCCCGATATAAAGCGGTGGATAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237646.2
CDS-3UTR CAA 90 bp TTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGGCTTTTCTTTCTTTAGGATaGAGAAGCAAGTACCGAGGG +
Preference number: 5 (lower is better)
Translates to: LTFWICSVDEQRTSVCGAFLSLG*RSKYRG
Trigger: CCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGAAA...AGCCCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp GGTAAACAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGTGCTCCCTTTTCTTTTaGGTAAGCGCTTCAATATGT +
Preference number: 5 (lower is better)
Translates to: GKQDLAYNSGGENQSTYVCSLFF*VSASIC
Trigger: ACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCA...CACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTGTTTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATTCTAGCAGCATGTCCTaGAACTGCTTCATTCGAGCC +
Preference number: 5 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHSSSMS*NCFIRA
Trigger: GGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGA...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GGATTAACTTTTTGGATCTGTTCTGTGGATGAACAGAGGACTTCAGTCTGCGGGTTTGCTCCATCGAGATaGACTATCCAAGTGATGATT +
Preference number: 5 (lower is better)
Translates to: GLTFWICSVDEQRTSVCGFAPSR*TIQVMI
Trigger: AATCATCACTTGGATAGTCAATCTCGATGGAGCAAA...CCCGCAGACTGAAGTCCTCTGTTCATCCACAGAACAGATCCAAAAAGTTAATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173642.2
CDS-3UTR CAA 90 bp CAAGACTTGGCCTATAACTCCGGAGGGGAGAATCAAAGCACATACGTGAACAAATTTGCTCCATCGAGATaGACTATCCAAGTGATGATT +
Preference number: 5 (lower is better)
Translates to: QDLAYNSGGENQSTYVNKFAPSR*TIQVMI
Trigger: AATCATCACTTGGATAGTCAATCTCGATGGAGCAAA...TTTGTTCACGTATGTGCTTTGATTCTCCCCTCCGGAGTTATAGGCCAAGTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTTTCTCGATGTACTGTTaGAAAAGGTCTTCTCTCATT +
Preference number: 5 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSFSMYC*KRSSLI
Trigger: AATGAGAGAAGACCTTTTCAAACAGTACATCGAGAA...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTGCTGAGTTCTGAGTCTAAATTCTaGGCTATTTTCTCGATGTAC +
Preference number: 5 (lower is better)
Translates to: WSLWYFQAPTTNSPVLLSSESKF*AIFSMY
Trigger: GTACATCGAGAAAATAGCCAAGAATTTAGACTCAGA...ACTCAGCAAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GTTTTCCTGGAGTCTGTGGTATTTCCAAGCTCCTACCACAAACTCTCCTGTCTTTGCTCCCTTTTCTTTTaGGTAAGCGCTTCAATATGT +
Preference number: 5 (lower is better)
Translates to: VFLESVVFPSSYHKLSCLCSLFF*VSASIC
Trigger: ACATATTGAAGCGCTTACCAAAAAGAAAAGGGAGCA...AAGACAGGAGAGTTTGTGGTAGGAGCTTGGAAATACCACAGACTCCAGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTCGGGCAGCTGACTATTaGCATCATTGCTACACCTGG +
Preference number: 5 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSIRAADY*HHCYTW
Trigger: CCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCG...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGGGTAGTACACCGGTCTaGGTGGTAGCGACTGTCTTT +
Preference number: 5 (lower is better)
Translates to: ENKECLNQDSTLANMLVMGSTPV*VVATVF
Trigger: AAAGACAGTCGCTACCACCAAGACCGGTGTACTACC...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTTTAACTCCATCTGGCTaGGTCCATGCAGATTCACGA +
Preference number: 5 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCLTPSG*VHADSR
Trigger: TCGTGAATCTGCATGGACCAAGCCAGATGGAGTTAA...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp GAGAATAAAGAATGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGTTAACTCCATCTGGCTaGGTCCATGCAGATTCACGA +
Preference number: 5 (lower is better)
Translates to: ENKECLNQDSTLANMLVMLTPSG*VHADSR
Trigger: TCGTGAATCTGCATGGACCAAGCCAGATGGAGTTAA...CATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACATTCTTTATTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTTTTCTTTCTTTAGGATaGAGAAGCAAGTACCGAGGG +
Preference number: 5 (lower is better)
Translates to: SNIQTGVVYRNTQKGSFVFLSLG*RSKYRG
Trigger: CCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGAAA...AACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTTTTCTTTCTTTAGGATaGAGAAGCAAGTACCGAGGG +
Preference number: 5 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCFLSLG*RSKYRG
Trigger: CCCTCGGTACTTGCTTCTCAATCCTAAAGAAAGAAA...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTCTTATGAGGGGGCTCTaGAATAATTTTGTCAACATC +
Preference number: 5 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCLMRGL*NNFVNI
Trigger: GATGTTGACAAAATTATTCAAGAGCCCCCTCATAAG...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TGTTTAAACCAGGATTCCACTCTGGCCAACATGTTAGTTATGAATGTGGTTCATTTTGCTCCATCGAGATaGACTATCCAAGTGATGATT +
Preference number: 5 (lower is better)
Translates to: CLNQDSTLANMLVMNVVHFAPSR*TIQVMI
Trigger: AATCATCACTTGGATAGTCAATCTCGATGGAGCAAA...ATGAACCACATTCATAACTAACATGTTGGCCAGAGTGGAATCCTGGTTTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AGACAGCCTATATTTGAGTATGTATGTCAGTCATGCCACACAAAGAAAAGCATTCTTATGAGGGGGCTCTaGAATAATTTTGTCAACATC +
Preference number: 5 (lower is better)
Translates to: RQPIFEYVCQSCHTKKSILMRGL*NNFVNI
Trigger: GATGTTGACAAAATTATTCAAGAGCCCCCTCATAAG...AATGCTTTTCTTTGTGTGGCATGACTGACATACATACTCAAATATAGGCTGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp TTCAAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTTCTCGATGTACTGTTaGAAAAGGTCTTCTCTCATT +
Preference number: 5 (lower is better)
Translates to: FKHSNRSSLQEHPEREFCFSMYC*KRSSLI
Trigger: AATGAGAGAAGACCTTTTCAAACAGTACATCGAGAA...ACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS-3UTR CAA 90 bp AAACATTCAAACAGGAGTAGTTTACAGGAACACCCAGAAAGGGAGTTTTGTTGTTCTGAGTCTAAATTCTaGGCTATTTTCTCGATGTAC +
Preference number: 5 (lower is better)
Translates to: KHSNRSSLQEHPEREFCCSESKF*AIFSMY
Trigger: GTACATCGAGAAAATAGCCAAGAATTTAGACTCAGA...ACAACAAAACTCCCTTTCTGGGTGTTCCTGTAAACTACTCCTGTTTGAATGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025375.15
ENSMUST00000237602.2
CDS CAA 90 bp TGCCTGGGCCTGAGCCTGGGCCTGGGCTTGGGCCTGGGCTTGTGCTaGCGCTTGGGCTTGGGCTTGAGCCTGAGCCTGGGCCTGGGCCTG +
Preference number: 6 (lower is better)
Translates to: CLGLSLGLGLGLGLC*RLGLGLSLSLGLGL
Trigger: CAGGCCCAGGCCCAGGCTCAGGCTCAAGCCCAAGCCCAAGCGCAAGCACAAGCCCAGGCCCAAGCCCAGGCCCAGGCTCAGGCCCAGGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS TCA 72 bp GGGGGAGCTGGGCCTCGGAACCTCAAGGCCTGCTGTTaGGCCATCCTCAGCTCCCCCGGGTTGAACCGCTCG +
Preference number: 6 (lower is better)
Translates to: GGAGPRNLKACC*AILSSPGLNRS
Trigger: CGAGCGGTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CAA 90 bp GGCATTTGGTGGGGGAGCTGGGCCTCGGAACCTCAAGGCCTGCTGTaGAGCCATCCTCAGCTCCCCCGGGTTGAACCGCTCGCCTTCCCC +
Preference number: 6 (lower is better)
Translates to: GIWWGSWASEPQGLL*SHPQLPRVEPLAFP
Trigger: GGGGAAGGCGAGCGGTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp CATGAGAGGTGGCGGGCCTCGCATCACGGCATTTGGTaGGGGAGCTGGGCCTCGGAACCTCAAGGCCTGCTG +
Preference number: 6 (lower is better)
Translates to: HERWRASHHGIW*GSWASEPQGLL
Trigger: CAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CAA 72 bp TGGGGGAGCTGGGCCTCGGAACCTCAAGGCCTGCTGTaGAGCCATCCTCAGCTCCCCCGGGTTGAACCGCTC +
Preference number: 6 (lower is better)
Translates to: WGSWASEPQGLL*SHPQLPRVEPL
Trigger: GAGCGGTTCAACCCGGGGGAGCTGAGGATGGCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp TGGCGGGCCTCGCATCACGGCATTTGGTGGGGGAGCTaGGCCTCGGAACCTCAAGGCCTGCTGTTGAGCCAT +
Preference number: 6 (lower is better)
Translates to: WRASHHGIWWGS*ASEPQGLLLSH
Trigger: ATGGCTCAACAGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp TCTCATGAGAGGTGGCGGGCCTCGCATCACGGCATTTaGTGGGGGAGCTGGGCCTCGGAACCTCAAGGCCTG +
Preference number: 6 (lower is better)
Translates to: SHERWRASHHGI*WGSWASEPQGL
Trigger: CAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATGAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp TGGAGGAGGGCCTCTCATCATGCCGAAAGGAGGAGGTaGTCTCATGAGAGGTGGCGGGCCTCGCATCACGGC +
Preference number: 6 (lower is better)
Translates to: WRRASHHAERRR*SHERWRASHHG
Trigger: GCCGTGATGCGAGGCCCGCCACCTCTCATGAGACCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp TGGAGCACCAGGAGCAGTCCCCGGAGGCATTCCTGGTaGGAACATCATACCCGGAGGAGGAGGCATAGCTCC +
Preference number: 6 (lower is better)
Translates to: WSTRSSPRRHSW*EHHTRRRRHSS
Trigger: GGAGCTATGCCTCCTCCTCCGGGTATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp TGCTGGAGCACCAGGAGCAGTCCCCGGAGGCATTCCTaGTGGGAACATCATACCCGGAGGAGGAGGCATAGC +
Preference number: 6 (lower is better)
Translates to: CWSTRSSPRRHS*WEHHTRRRRHS
Trigger: GCTATGCCTCCTCCTCCGGGTATGATGTTCCCACCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS TCA 72 bp GGCCTCTCATCATGCCGAAAGGAGGAGGTGGTCTCATaGGAGGTGGCGGGCCTCGCATCACGGCATTTGGTG +
Preference number: 6 (lower is better)
Translates to: GLSSCRKEEVVS*EVAGLASRHLV
Trigger: CACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCATGAGACCACCTCCTCCTTTCGGCATGATGAGAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp AGGCAGGGGCACACGGAACGGAGGCACCATTACTGGTaGGAAAGCAGGTATTGCTGCTGCCGGCTGAGGTAC +
Preference number: 6 (lower is better)
Translates to: RQGHTERRHHYW*ESRYCCCRLRY
Trigger: GTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTCCGTGTGCCCCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS CAA 90 bp GGGGCACACGGAACGGAGGCACCATTACTGGTGGGAAAGCAGGTATaGCTGCTGCCGGCTGAGGTACCGAGTGAGGAACAGCAGGAGGTA +
Preference number: 6 (lower is better)
Translates to: GAHGTEAPLLVGKQV*LLPAEVPSEEQQEV
Trigger: TACCTCCTGCTGTTCCTCACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTCCGTGTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS GCA 72 bp CGGAGGCACCATTACTGGTGGGAAAGCAGGTATTGCTaGTGCCGGCTGAGGTACCGAGTGAGGAACAGCAGG +
Preference number: 6 (lower is better)
Translates to: RRHHYWWESRYC*CRLRYRVRNSR
Trigger: CCTGCTGTTCCTCACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS GCA 72 bp AGGCACCATTACTGGTGGGAAAGCAGGTATTGCTGCTaGCGGCTGAGGTACCGAGTGAGGAACAGCAGGAGG +
Preference number: 6 (lower is better)
Translates to: RHHYWWESRYCC*RLRYRVRNSRR
Trigger: CCTCCTGCTGTTCCTCACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS GCA 72 bp GAACGGAGGCACCATTACTGGTGGGAAAGCAGGTATTaGTGCTGCCGGCTGAGGTACCGAGTGAGGAACAGC +
Preference number: 6 (lower is better)
Translates to: ERRHHYWWESRY*CCRLRYRVRNS
Trigger: GCTGTTCCTCACTCGGTACCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS CCA 72 bp ATTTTCTACCCATATCTCCTCAGTGGGAGGCAGTGCTaGAGCACCAGGAGCAGTCCCCGGAGGCATTCCTGG +
Preference number: 6 (lower is better)
Translates to: IFYPYLLSGRQC*STRSSPRRHSW
Trigger: CCAGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCTCCCACTGAGGAGATATGGGTAGAAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS GCA 72 bp CGCCTTCTGAACTTCTCTTTCCCGTTCTCGAAGGCTTaGCTCAATGCGGGCTTGCCTCTCCAGCTCTTTTTC +
Preference number: 6 (lower is better)
Translates to: RLLNFSFPFSKA*LNAGLPLQLFF
Trigger: GAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGGAAAGAGAAGTTCAGAAGGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS GCA 72 bp GCCTTGAAGTTCTGGATAGCCTCCTCCCGTTTGTGCTaGTCTCTCTCCCGATCGATCTCTTTCGTCTGCTCA +
Preference number: 6 (lower is better)
Translates to: ALKFWIASSRLC*SLSRSISFVCS
Trigger: TGAGCAGACGAAAGAGATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTATCCAGAACTTCAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS GCA 72 bp AGAGCCTTGAAGTTCTGGATAGCCTCCTCCCGTTTGTaGTGCTCTCTCTCCCGATCGATCTCTTTCGTCTGC +
Preference number: 6 (lower is better)
Translates to: RALKFWIASSRL*CSLSRSISFVC
Trigger: GCAGACGAAAGAGATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTATCCAGAACTTCAAGGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS CCA 72 bp TCCTCTCTTTCCAATAAGGACCCAGATTCCCAGCGGTaGTCTTTCCGGAGGGTCCTCCTAGTATCAGACCAG +
Preference number: 6 (lower is better)
Translates to: SSLSNKDPDSQR*SFRRVLLVSDQ
Trigger: CTGGTCTGATACTAGGAGGACCCTCCGGAAAGACCACCGCTGGGAATCTGGGTCCTTATTGGAAAGAGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS CAA 72 bp GCGCCTTCTGAACTTCTCTTTCCCGTTCTCGAAGGCTaGCCTCAATGCGGGCTTGCCTCTCCAGCTCTTTTT +
Preference number: 6 (lower is better)
Translates to: APSELLFPVLEG*PQCGLASPALF
Trigger: AAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGGAAAGAGAAGTTCAGAAGGCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS CAA 90 bp GCTCAGAGCGCGCCTTCTGAACTTCTCTTTCCCGTTCTCGAAGGCTaGCCTCAATGCGGGCTTGCCTCTCCAGCTCTTTTTCTTTTTCTG +
Preference number: 6 (lower is better)
Translates to: AQSAPSELLFPVLEG*PQCGLASPALFLFL
Trigger: CAGAAAAAGAAAAAGAGCTGGAGAGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGGAAAGAGAAGTTCAGAAGGCGCGCTCTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS CCA 72 bp CATAGGTGGAGGTATTCCTCCTGGAGGAGGCATTGGTaGCATATTAGGATCAAAAGGAGGCCGTCCAAAGGG +
Preference number: 6 (lower is better)
Translates to: HRWRYSSWRRHW*HIRIKRRPSKG
Trigger: CCCTTTGGACGGCCTCCTTTTGATCCTAATATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCACCTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp GCCCATAGGTGGAGGTATTCCTCCTGGAGGAGGCATTaGTGGCATATTAGGATCAAAAGGAGGCCGTCCAAA +
Preference number: 6 (lower is better)
Translates to: AHRWRYSSWRRH*WHIRIKRRPSK
Trigger: TTTGGACGGCCTCCTTTTGATCCTAATATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCACCTATGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CAA 72 bp AGAAGAGCCTTGAAGTTCTGGATAGCCTCCTCCCGTTaGTGCTGCTCTCTCTCCCGATCGATCTCTTTCGTC +
Preference number: 6 (lower is better)
Translates to: RRALKFWIASSR*CCSLSRSISFV
Trigger: GACGAAAGAGATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTATCCAGAACTTCAAGGCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS TCA 72 bp GCTTGGGCTGCAAGCATGGGCGTCAGTTCTGATTGCTaGATAACCTTAACTCCATCTGGCTTGGTCCATGCA +
Preference number: 6 (lower is better)
Translates to: AWAASMGVSSDC*ITLTPSGLVHA
Trigger: TGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS TCA 72 bp AAAAAGCAGACACCCCTCTCTCTAGCAGCATGTCCTTaGACTGCTTCATTCGAGCCTCCAGAGGGACAATGG +
Preference number: 6 (lower is better)
Translates to: KKQTPLSLAACP*TASFEPPEGQW
Trigger: CCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGAGAGAGGGGTGTCTGCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CAA 72 bp CGCTCATTGAGAACTGCCACTTTTGGATGGACAGCATaGTCGGAGCCGGGTGCCTTAGCTTCTTCATGTCTT +
Preference number: 6 (lower is better)
Translates to: RSLRTATFGWTA*SEPGALASSCL
Trigger: AAGACATGAAGAAGCTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS TCA 72 bp AACCTGTGCTTGGGCTGCAAGCATGGGCGTCAGTTCTaGTTGCTGAATAACCTTAACTCCATCTGGCTTGGT +
Preference number: 6 (lower is better)
Translates to: NLCLGCKHGRQF*LLNNLNSIWLG
Trigger: ACCAAGCCAGATGGAGTTAAGGTTATTCAGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAGCACAGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp GTAGGTGTGGCAACTGAAACAGCAGAACTTGGGGTCTaGTCTTGTGTTGTGGGTGTTGATACTGTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: VGVATETAELGV*SCVVGVDTVCA
Trigger: TGCACAGACAGTATCAACACCCACAACACAAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACACCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CCA 72 bp TCTTCTTTAATTGCGCTCATTGAGAACTGCCACTTTTaGATGGACAGCATTGTCGGAGCCGGGTGCCTTAGC +
Preference number: 6 (lower is better)
Translates to: SSLIALIENCHF*MDSIVGAGCLS
Trigger: GCTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCGCAATTAAAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS GCA 72 bp TGCCACTTTTGGATGGACAGCATTGTCGGAGCCGGGTaGCTTAGCTTCTTCATGTCTTCCAATCCTTTCTTA +
Preference number: 6 (lower is better)
Translates to: CHFWMDSIVGAG*LSFFMSSNPFL
Trigger: TAAGAAAGGATTGGAAGACATGAAGAAGCTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS GCA 72 bp GTAGCGACTGTCTTTACATACGGGCAGCTGACTATTTaGATCATTGCTACACCTGGAAGTGGGATTGGCATG +
Preference number: 6 (lower is better)
Translates to: VATVFTYGQLTI*IIATPGSGIGM
Trigger: CATGCCAATCCCACTTCCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAAAGACAGTCGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000173642.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS CAA 72 bp GGTAGCGACTGTCTTTACATACGGGCAGCTGACTATTaGCATCATTGCTACACCTGGAAGTGGGATTGGCAT +
Preference number: 6 (lower is better)
Translates to: GSDCLYIRAADY*HHCYTWKWDWH
Trigger: ATGCCAATCCCACTTCCAGGTGTAGCAATGATGCAAATAGTCAGCTGCCCGTATGTAAAGACAGTCGCTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000173642.2
ENSMUST00000237390.2
ENSMUST00000237602.2
CDS GCA 72 bp AACTCTTGTTCTTCTTTAATTGCGCTCATTGAGAACTaGCACTTTTGGATGGACAGCATTGTCGGAGCCGGG +
Preference number: 6 (lower is better)
Translates to: NSCSSLIALIEN*HFWMDSIVGAG
Trigger: CCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCTCAATGAGCGCAATTAAAGAAGAACAAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS GCA 72 bp TTGCTGAATAACCTTAACTCCATCTGGCTTGGTCCATaGAGATTCACGAGTCCGAGCATTGTAGTAATAAAC +
Preference number: 6 (lower is better)
Translates to: LLNNLNSIWLGP*RFTSPSIVVIN
Trigger: GTTTATTACTACAATGCTCGGACTCGTGAATCTGCATGGACCAAGCCAGATGGAGTTAAGGTTATTCAGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000237602.2
CDS CAA 72 bp CTTCATGTCTTCCAATCCTTTCTTATGAGGGGGCTCTaGAATAATTTTGTCAACATCCGCCCTTCCAATCAA +
Preference number: 6 (lower is better)
Translates to: LHVFQSFLMRGL*NNFVNIRPSNQ
Trigger: TTGATTGGAAGGGCGGATGTTGACAAAATTATTCAAGAGCCCCCTCATAAGAAAGGATTGGAAGACATGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000236088.2
ENSMUST00000236418.2
ENSMUST00000237602.2
CDS TCA 72 bp AGTCTAAATTCTTGGCTATTTTCTCGATGTACTGTTTaGAAAGGTCTTCTCTCATTGATGAACTATCCACCG +
Preference number: 6 (lower is better)
Translates to: SLNSWLFSRCTV*KGLLSLMNYPP
Trigger: CGGTGGATAGTTCATCAATGAGAGAAGACCTTTTCAAACAGTACATCGAGAAAATAGCCAAGAATTTAGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2
CDS CAA 72 bp GAGTCTAAATTCTTGGCTATTTTCTCGATGTACTGTTaGAAAAGGTCTTCTCTCATTGATGAACTATCCACC +
Preference number: 6 (lower is better)
Translates to: ESKFLAIFSMYC*KRSSLIDELST
Trigger: GGTGGATAGTTCATCAATGAGAGAAGACCTTTTCAAACAGTACATCGAGAAAATAGCCAAGAATTTAGACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025375.15
ENSMUST00000173642.2
ENSMUST00000237602.2