Pregenerated sensors for TCEANC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051224Ensembl transcript IDs: ENSMUST00000112187.2, ENSMUST00000112188.8, ENSMUST00000180322.2
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAGGTGCGCCTATAATGCAAGCACTCATGAGACTGGGCCACCTTTaGCTATATAATGACATCTTTCATGAACTAAAACCCAAAGGCAAA | + |
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Preference number: 1 (lower is better) Translates to: PGAPIMQALMRLGHL*LYNDIFHELKPKGK Trigger: TTTGCCTTTGGGTTTTAGTTCATGAAAGATGTCATTATATAGCCAAAGGTGGCCCAGTCTCATGAGTGCTTGCATTATAGGCGCACCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CCA 90 bp | GATCAGTGTGAAGCCGACTACATACAGTTGTGTAACCTGGGCAAGTaGGCTGCTTTCCTCATCTGTAAACTCCAGAATAACATTAATTTC | + |
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Preference number: 1 (lower is better) Translates to: DQCEADYIQLCNLGK*AAFLICKLQNNINF Trigger: GAAATTAATGTTATTCTGGAGTTTACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGCTTCACACTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | GAGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTGGAGGCAGAAGCAGGTaGATTTCTCAGTTCGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: EFGSVSLSNSGCPQLWDSGGRSR*ISQFEA Trigger: GGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCC...AGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGCCAATCATAGCACTCTGGAGGTTAAGGCCAGCCAGTGTGAGTTTGAACCCAGCAGTGTTGATTACTaGGTCCAGGCCATAGGTTCA | + |
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Preference number: 2 (lower is better) Translates to: TANHSTLEVKASQCEFEPSSVDY*VQAIGS Trigger: TGAACCTATGGCCTGGACCCAGTAATCAACACTGCT...GGGTTCAAACTCACACTGGCTGGCCTTAACCTCCAGAGTGCTATGATTGGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAAAGTTCGAGGCCAGCCTaGTCTCCAGGACAGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: EMFASFMQLLGNCHTEVKSSRPA*SPGQPG Trigger: CCCTGGCTGTCCTGGAGACCAGGCTGGCCTCGAACT...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCTTTAGTCCCAGCACTTaGGAGGCAGAAGCAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: SFETGTLQVKLAGTHINPFSPST*EAEAGG Trigger: TCCACCTGCTTCTGCCTCCCAAGTGCTGGGACTAAA...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR GCA 90 bp | GCCGACTACATACAGTTGTGTAACCTGGGCAAGTGGGCTGCTTTCCTCATCTGTGTTCCTAACTCTAACTaGAACTTAACAGGAACCAAG | + |
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Preference number: 2 (lower is better) Translates to: ADYIQLCNLGKWAAFLICVPNSN*NLTGTK Trigger: CTTGGTTCCTGTTAAGTTGCAGTTAGAGTTAGGAAC...ACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCGTAAGCTGGAAAACCTaGGATCAGTGTGAAGCCGAC | + |
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Preference number: 2 (lower is better) Translates to: SFETGTLQVKLAGTHINPVSWKT*DQCEAD Trigger: GTCGGCTTCACACTGATCCCAGGTTTTCCAGCTTAC...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR GCA 90 bp | GAGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTTTGAGACAGGAACTTTaGAAGTCAAACTGGCCGGAA | + |
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Preference number: 2 (lower is better) Translates to: EFGSVSLSNSGCPQLWDSLRQEL*KSNWPE Trigger: TTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAA...AGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR GCA 90 bp | GAGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTGTATATAAAGCCAGGTaGGCCTATAATGCAAGCACT | + |
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Preference number: 2 (lower is better) Translates to: EFGSVSLSNSGCPQLWDSVYKAR*AYNAST Trigger: AGTGCTTGCATTATAGGCGCACCTGGCTTTATATAC...AGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAATGTAACCTGGGCAAGTaGGCTGCTTTCCTCATCTGT | + |
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Preference number: 2 (lower is better) Translates to: EMFASFMQLLGNCHTEVKCNLGK*AAFLIC Trigger: ACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACA...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACTGTTTGCTAGTTTTATaGAACTATTGGGGAACTGTC | + |
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Preference number: 2 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHCLLVL*NYWGTV Trigger: GACAGTTCCCCAATAGTTGCATAAAACTAGCAAACA...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR GCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAAGTTTCATCTCTAACATaGTCTCAGGTAGTGTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: EMFASFMQLLGNCHTEVKVSSLT*SQVVWS Trigger: GCTCCACACTACCTGAGAGCATGTTAGAGATGAAAC...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | TACGGAGGTAAAAATATAAAGAAAAGCCTACAGATCCCAATGAAGGAATACTGGATTCTCCCTAGTATTTaGACCACAGGCATGTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: YGGKNIKKSLQIPMKEYWILPSI*TTGMCH Trigger: ATGGCACATGCCTGTGGTCCAAATACTAGGGAGAAT...CCAGTATTCCTTCATTGGGATCTGTAGGCTTTTCTTTATATTTTTACCTCCGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CAA 90 bp | TTTAGACAAATGAAACAAGGTTTTTATAGGCTGTGTGTGCTGCTCTaGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACATG | + |
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Preference number: 2 (lower is better) Translates to: FRQMKQGFYRLCVLL*HNHCLGFKIIPSHM Trigger: CATGTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACACAGCCTATAAAAACCTTGTTTCATTTGTCTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CAA 90 bp | AGAGTAAAACTCCGGTCACATAAGCTTAGAGGTCCCAAACACTATTaGCTTAGCACCTATTTCCAAGAGTATACTTCTTACAAAGTCAAT | + |
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Preference number: 2 (lower is better) Translates to: RVKLRSHKLRGPKHY*LSTYFQEYTSYKVN Trigger: ATTGACTTTGTAAGAAGTATACTCTTGGAAATAGGTGCTAAGCAAATAGTGTTTGGGACCTCTAAGCTTATGTGACCGGAGTTTTACTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAAGATAAAATCAATGAATaGTGGCTTACACTGCCAATC | + |
|
Preference number: 2 (lower is better) Translates to: EMFASFMQLLGNCHTEVKDKINE*WLTLPI Trigger: GATTGGCAGTGTAAGCCACCATTCATTGATTTTATC...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CCA 72 bp | CGGGCAGTGGTGGCGGACACCTTTAGTCCCAGCACTTaGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGG | + |
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Preference number: 3 (lower is better) Translates to: RAVVADTFSPST*EAEAGGFLSSR Trigger: CCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTCCGCCACCACTGCCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR GCA 72 bp | TGCCTCATTCTCCCTAGTATTTGGACCACAGGCATGTaGCATCACACCTGCTTGAGAAGTAAGCTGGAAAAC | + |
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Preference number: 3 (lower is better) Translates to: CLILPSIWTTGM*HHTCLRSKLEN Trigger: GTTTTCCAGCTTACTTCTCAAGCAGGTGTGATGGCACATGCCTGTGGTCCAAATACTAGGGAGAATGAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CCA 72 bp | ATCAGTGTGAAGCCGACTACATACAGTTGTGTAACCTaGGCAAGTGGGCTGCTTTCCTCATCTGTAAACTCC | + |
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Preference number: 3 (lower is better) Translates to: ISVKPTTYSCVT*ASGLLSSSVNS Trigger: GGAGTTTACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGCTTCACACTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CCA 72 bp | GAAGCCGACTACATACAGTTGTGTAACCTGGGCAAGTaGGCTGCTTTCCTCATCTGTAAACTCCAGAATAAC | + |
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Preference number: 3 (lower is better) Translates to: EADYIQLCNLGK*AAFLICKLQNN Trigger: GTTATTCTGGAGTTTACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR GCA 72 bp | TTTGAGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTaGCCTCAACTATGGGATTCTGCCTTAGCATTCCCA | + |
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Preference number: 3 (lower is better) Translates to: FEFGSVSLSNSG*PQLWDSALAFP Trigger: TGGGAATGCTAAGGCAGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR CCA 72 bp | CCTATAATGCAAGCACTCATGAGACTGGGCCACCTTTaGCTATATAATGACATCTTTCATGAACTAAAACCC | + |
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Preference number: 3 (lower is better) Translates to: PIMQALMRLGHL*LYNDIFHELKP Trigger: GGGTTTTAGTTCATGAAAGATGTCATTATATAGCCAAAGGTGGCCCAGTCTCATGAGTGCTTGCATTATAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR GCA 72 bp | TCCGGTCACATAAGCTTAGAGGTCCCAAACACTATTTaGTTAGCACCTATTTCCAAGAGTATACTTCTTACA | + |
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Preference number: 3 (lower is better) Translates to: SGHISLEVPNTI*LAPISKSILLT Trigger: TGTAAGAAGTATACTCTTGGAAATAGGTGCTAAGCAAATAGTGTTTGGGACCTCTAAGCTTATGTGACCGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR TCA 72 bp | GAGAGACTTCCTCTAACAACTAGTGCCATTTTCACATaGTCAGAATTTGAATTTCAATCCCAACACACATGC | + |
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Preference number: 3 (lower is better) Translates to: ERLPLTTSAIFT*SEFEFQSQHTC Trigger: GCATGTGTGTTGGGATTGAAATTCAAATTCTGATCATGTGAAAATGGCACTAGTTGTTAGAGGAAGTCTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| 3UTR-3UTR CAA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAATCCCTTTTAACAGTTTaGAGACAGGAACTTTGCAAG | + |
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Preference number: 3 (lower is better) Translates to: EMFASFMQLLGNCHTEVKSLLTV*RQELCK Trigger: CTTGCAAAGTTCCTGTCTCAAAACTGTTAAAAGGGA...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | ACAAGCCGGGCAGTGGTGGCGGACACCTTTAGTCCCAGCACTTGGGAGGCAGAAACTTTCAGATCCAATTaGTGCAGCAGGCTTTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TSRAVVADTFSPSTWEAETFRSN*CSRLCS Trigger: GCTGCAAAGCCTGCTGCAGCAATTGGATCTGAAAGT...TTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTCCGCCACCACTGCCCGGCTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR TCA 90 bp | ACTTGGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTCCATCCTGGCTTACATCCTaGGAAACTGCTGCACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSPSWLTS*ETAALS Trigger: AGAAAGTGCAGCAGTTTCTCAGGATGTAAGCCAGGA...TGGAGACCAGGCTGGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR CCA 90 bp | ACTTGGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTCCACCCATGATCTCACTATaGCTAGAGCCTGAGGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSPPMISL*LEPEVS Trigger: TGAAACCTCAGGCTCTAGCCATAGTGAGATCATGGG...TGGAGACCAGGCTGGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | ACAAGCCGGGCAGTGGTGGCGGACACCTTTAGTCCCAGCACTTGGGAGGCAGAATTTCCATTTGAGCAGTaGTACTTTCAGATCCAATTG | + |
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Preference number: 4 (lower is better) Translates to: TSRAVVADTFSPSTWEAEFPFEQ*YFQIQL Trigger: CAATTGGATCTGAAAGTAGCACTGCTCAAATGGAAA...TTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTCCGCCACCACTGCCCGGCTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | ACTTGGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTCCAGGCAATGTTCTTGAATaGTGGATTCTGTGTAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSPGNVLE*WILCRK Trigger: CTTCCTACACAGAATCCAGCATTCAAGAACATTGCC...TGGAGACCAGGCTGGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR CCA 90 bp | ACTTGGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTCCATTTAGGGCTTTGCCTTaGTTTGCAGTGTGTACTCTT | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSPFRALP*FAVCTL Trigger: AAGAGTACACACTGCAAACCAAGGCAAAGCCCTAAA...TGGAGACCAGGCTGGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR TCA 90 bp | GCCGACTACATACAGTTGTGTAACCTGGGCAAGTGGGCTGCTTTCCTCATCTGTAGGAAGCCCTGGCAATaGTTTGGTTCTTGTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: ADYIQLCNLGKWAAFLICRKPWQ*FGSCQT Trigger: TGTCTGACAAGAACCAAATCATTGCCAGGGCTTCCT...ACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR CCA 90 bp | GCCGACTACATACAGTTGTGTAACCTGGGCAAGTGGGCTGCTTTCCTCATCTGTAGTTGCTTGAGTTCCTaGCTTGCCATGTCCAAGACA | + |
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Preference number: 4 (lower is better) Translates to: ADYIQLCNLGKWAAFLICSCLSS*LAMSKT Trigger: TGTCTTGGACATGGCAAGCCAGGAACTCAAGCAACT...ACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | ACTGCCAATCATAGCACTCTGGAGGTTAAGGCCAGCCAGTGTGAGTTTGAACCCACTACATCTGTCTCCTaGAGATGCTCCTTAGACACA | + |
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Preference number: 4 (lower is better) Translates to: TANHSTLEVKASQCEFEPTTSVS*RCSLDT Trigger: TGTGTCTAAGGAGCATCTGCAGGAGACAGATGTAGT...GGGTTCAAACTCACACTGGCTGGCCTTAACCTCCAGAGTGCTATGATTGGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | ACTTGGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTCCAATCCTGAGAAACTGCTaGACTTTCTTCTTTATTAGC | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSPILRNC*TFFFIS Trigger: GCTAATAAAGAAGAAAGTGCAGCAGTTTCTCAGGAT...TGGAGACCAGGCTGGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | AGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTGCTGAGCTCTTGCGAGTaGATTCAGAGTCATCACCCT | + |
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Preference number: 4 (lower is better) Translates to: SLAVFLYLTQAALNYGILLSSCE*IQSHHP Trigger: AGGGTGATGACTCTGAATGCACTCGCAAGAGCTCAG...CAGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR TCA 90 bp | GAGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTCTGATGGGCAGTTTTTaGGGACTCTGTAAACAGCTC | + |
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Preference number: 4 (lower is better) Translates to: EFGSVSLSNSGCPQLWDSLMGSF*GLCKQL Trigger: GAGCTGTTTACAGAGTCCTCAAAAACTGCCCATCAG...AGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR TCA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCACTATGGCTAGAGCCTaGGGTTTCATCCTGGCTTAC | + |
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Preference number: 4 (lower is better) Translates to: SFETGTLQVKLAGTHINPTMARA*GFILAY Trigger: GTAAGCCAGGATGAAACCTCAGGCTCTAGCCATAGT...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | AGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTGTTCAGCAAACTCCCTTaGAGACATGGTTCCAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: SLAVFLYLTQAALNYGILFSKLP*RHGSRE Trigger: CTCTCTGGAACCATGTCTGCAAGGGAGTTTGCTGAA...CAGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR CCA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACGGCTTTGCAGCATCTTaGGGTAACAGCCTAGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHGFAAS*GNSLER Trigger: TCTCTCTAGGCTGTTACCCCAAGATGCTGCAAAGCC...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR TCA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACCTCTGTAAACAGCTCTaGCTACATCTGTCTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHLCKQL*LHLSPA Trigger: TGCAGGAGACAGATGTAGTCAGAGCTGTTTACAGAG...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACTTCAGATCCAATTGCTaGAGCAGGCTTTGCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHFRSNC*SRLCSI Trigger: GATGCTGCAAAGCCTGCTGCAGCAATTGGATCTGAA...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR TCA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCATGTGCACTTCTGTGTaGTCTGTGCAAGAACTAGCT | + |
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Preference number: 4 (lower is better) Translates to: SFETGTLQVKLAGTHINPMCTSV*SVQELA Trigger: AGCTAGTTCTTGCACAGATCACACAGAAGTGCACAT...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | ACTGCCAATCATAGCACTCTGGAGGTTAAGGCCAGCCAGTGTGAGTTTGAACCCTACATCCTGAGAAACTaGTGCACTTTCTTCTTTATT | + |
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Preference number: 4 (lower is better) Translates to: TANHSTLEVKASQCEFEPYILRN*CTFFFI Trigger: AATAAAGAAGAAAGTGCAGCAGTTTCTCAGGATGTA...GGGTTCAAACTCACACTGGCTGGCCTTAACCTCCAGAGTGCTATGATTGGCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR CCA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACACTCCCTTGCAGACATaGTTCCAGAGAGGAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHTPLQT*FQRGSF Trigger: AAAACTTCCTCTCTGGAACCATGTCTGCAAGGGAGT...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
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| CDS-3UTR GCA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCTCTCTTGCTAAGTTCTaGCATATGTGCACTTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SFETGTLQVKLAGTHINPSLAKF*HMCTSV Trigger: CACAGAAGTGCACATATGGCAGAACTTAGCAAGAGA...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR TCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAACCATGTGCCATCAACTaGTTGGGGAAGGCAATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: EMFASFMQLLGNCHTEVKPCAIN*LGKAMF Trigger: GAACATTGCCTTCCCCAATCAGTTGATGGCACATGG...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CCA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCAATGTTCTTGAATGCTaGATTCTGTGTAGGAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SFETGTLQVKLAGTHINPNVLEC*ILCRKL Trigger: GAGCTTCCTACACAGAATCCAGCATTCAAGAACATT...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| 3UTR CAA 72 bp | CTCCGGTCACATAAGCTTAGAGGTCCCAAACACTATTaGCTTAGCACCTATTTCCAAGAGTATACTTCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: LRSHKLRGPKHY*LSTYFQEYTSY Trigger: GTAAGAAGTATACTCTTGGAAATAGGTGCTAAGCAAATAGTGTTTGGGACCTCTAAGCTTATGTGACCGGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR GCA 90 bp | TACGGAGGTAAAAATATAAAGAAAAGCCTACAGATCCCAATGAAGGAATACTGGACACACCTGAGCTCTTaGGAGTGCATTCAGAGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: YGGKNIKKSLQIPMKEYWTHLSS*ECIQSH Trigger: ATGACTCTGAATGCACTCGCAAGAGCTCAGGTGTGT...CCAGTATTCCTTCATTGGGATCTGTAGGCTTTTCTTTATATTTTTACCTCCGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAACATACCCAGTTGTTATaGTACCACTGCTCCCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: EMFASFMQLLGNCHTEVKHTQLL*YHCSPH Trigger: ATGTGGGGAGCAGTGGTACCATAACAACTGGGTATG...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAATGGCCAGCAGACACTTaGCCTTCTTCTTTAAAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EMFASFMQLLGNCHTEVKWPADT*PSSLKS Trigger: TGACTTTAAAGAAGAAGGCCAAGTGTCTGCTGGCCA...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| 3UTR CAA 72 bp | ATGAAACAAGGTTTTTATAGGCTGTGTGTGCTGCTCTaGCACAACCACTGTCTAGGTTTTAAGATCATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: MKQGFYRLCVLL*HNHCLGFKIIP Trigger: TGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACACAGCCTATAAAAACCTTGTTTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CCA 90 bp | GAAATGTTTGCTAGTTTTATGCAACTATTGGGGAACTGTCATACGGAGGTAAAAATTCTGCACCCAACTTaGAAGGAAAAGTGTTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: EMFASFMQLLGNCHTEVKILHPT*KEKCSS Trigger: AGAGGAACACTTTTCCTTCCAAGTTGGGTGCAGAAT...TTTTACCTCCGTATGACAGTTCCCCAATAGTTGCATAAAACTAGCAAACATTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | ACAAGCCGGGCAGTGGTGGCGGACACCTTTAGTCCCAGCACTTGGGAGGCAGAATTGCTGCAGCAGGCTTaGCAGCATCTTGGGGTAACA | + |
|
Preference number: 5 (lower is better) Translates to: TSRAVVADTFSPSTWEAELLQQA*QHLGVT Trigger: TGTTACCCCAAGATGCTGCAAAGCCTGCTGCAGCAA...TTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTCCGCCACCACTGCCCGGCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | ACTTGGGAGGCAGAAGCAGGTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTCCAAATTCTGCACCCAACTaGGAAGGAAAAGTGTTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: TWEAEAGGFLSSRPAWSPNSAPN*EGKVFL Trigger: GAGGAACACTTTTCCTTCCAAGTTGGGTGCAGAATT...TGGAGACCAGGCTGGCCTCGAACTGAGAAATCCACCTGCTTCTGCCTCCCAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS CCA 90 bp | GTGCTACTTTCAGATCCAATTGCTGCAGCAGGCTTTGCAGCATCTTaGGGTAACAGCCTAGAGAGAGAACTGCAGAGACCCATGATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: VLLSDPIAAAGFAAS*GNSLERELQRPMIS Trigger: TGAGATCATGGGTCTCTGCAGTTCTCTCTCTAGGCTGTTACCCCAAGATGCTGCAAAGCCTGCTGCAGCAATTGGATCTGAAAGTAGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS GCA 90 bp | GCTGGATTCTGTGTAGGAAGCTCTCAGTTGCTTGAGTTCCTGGCTTaGCATGTCCAAGACACTCATTTCAGCAAACTCCCTTGCAGACAT | + |
|
Preference number: 5 (lower is better) Translates to: AGFCVGSSQLLEFLA*HVQDTHFSKLPCRH Trigger: ATGTCTGCAAGGGAGTTTGCTGAAATGAGTGTCTTGGACATGGCAAGCCAGGAACTCAAGCAACTGAGAGCTTCCTACACAGAATCCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS-3UTR CAA 90 bp | GCCGACTACATACAGTTGTGTAACCTGGGCAAGTGGGCTGCTTTCCTCATCTGTGCAATCACAGTGACCTaGCAGTTGTATTTATCACAG | + |
|
Preference number: 5 (lower is better) Translates to: ADYIQLCNLGKWAAFLICAITVT*QLYLSQ Trigger: CTGTGATAAATACAACTGCAAGGTCACTGTGATTGC...ACAGATGAGGAAAGCAGCCCACTTGCCCAGGTTACACAACTGTATGTAGTCGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS CCA 90 bp | TTTGCCTTGGTTTGCAGTGTGTACTCTTATAGAAACCTCTCCACTTaGCCAGCAGACACTTGGCCTTCTTCTTTAAAGTCACTGATGGGC | + |
|
Preference number: 5 (lower is better) Translates to: FALVCSVYSYRNLST*PADTWPSSLKSLMG Trigger: GCCCATCAGTGACTTTAAAGAAGAAGGCCAAGTGTCTGCTGGCCAAGTGGAGAGGTTTCTATAAGAGTACACACTGCAAACCAAGGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS-3UTR CAA 90 bp | GAGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTTTGGCCAGCAGACACTaGGCCTTCTTCTTTAAAGTC | + |
|
Preference number: 5 (lower is better) Translates to: EFGSVSLSNSGCPQLWDSLASRH*AFFFKV Trigger: GACTTTAAAGAAGAAGGCCAAGTGTCTGCTGGCCAA...AGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACAACACACCTGAGCTCTaGCGAGTGCATTCAGAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHNTPEL*RVHSES Trigger: TGACTCTGAATGCACTCGCAAGAGCTCAGGTGTGTT...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | ACTGCCAATCATAGCACTCTGGAGGTTAAGGCCAGCCAGTGTGAGTTTGAACCCGCTCTTCAATTTCTCTaGCTAAGTTCTGCCATATGT | + |
|
Preference number: 5 (lower is better) Translates to: TANHSTLEVKASQCEFEPALQFL*LSSAIC Trigger: ACATATGGCAGAACTTAGCAAGAGAAATTGAAGAGC...GGGTTCAAACTCACACTGGCTGGCCTTAACCTCCAGAGTGCTATGATTGGCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | AGTTTTGAGACAGGAACTTTGCAAGTCAAACTGGCCGGAACTCACATAAATCCCCACAAGCATACCCAGTaGTTATGGTACCACTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SFETGTLQVKLAGTHINPHKHTQ*LWYHCS Trigger: GGAGCAGTGGTACCATAACAACTGGGTATGCTTGTG...GGGATTTATGTGAGTTCCGGCCAGTTTGACTTGCAAAGTTCCTGTCTCAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | TTCCTGAGAACTTCAGGCCTAATGCTATGTATGTCAGTGATTCTCAAAATACCCGAAGCTCTCAGTTGCTaGAGTTCCTGGCTTGCCATG | + |
|
Preference number: 5 (lower is better) Translates to: FLRTSGLMLCMSVILKIPEALSC*SSWLAM Trigger: CATGGCAAGCCAGGAACTCAAGCAACTGAGAGCTTC...GGGTATTTTGAGAATCACTGACATACATAGCATTAGGCCTGAAGTTCTCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS-3UTR CAA 90 bp | AGTTTGGCAGTGTTTCTCTATCTAACTCAGGCTGCCCTCAACTATGGGATTCTGGGGAAGGCAATGTTCTaGAATGCTGGATTCTGTGTA | + |
|
Preference number: 5 (lower is better) Translates to: SLAVFLYLTQAALNYGILGKAMF*NAGFCV Trigger: TACACAGAATCCAGCATTCAAGAACATTGCCTTCCC...CAGAATCCCATAGTTGAGGGCAGCCTGAGTTAGATAGAGAAACACTGCCAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS TCA 90 bp | AATGTTCTTGAATGCTGGATTCTGTGTAGGAAGCTCTCAGTTGCTTaGGTTCCTGGCTTGCCATGTCCAAGACACTCATTTCAGCAAACT | + |
|
Preference number: 5 (lower is better) Translates to: NVLECWILCRKLSVA*VPGLPCPRHSFQQT Trigger: AGTTTGCTGAAATGAGTGTCTTGGACATGGCAAGCCAGGAACTCAAGCAACTGAGAGCTTCCTACACAGAATCCAGCATTCAAGAACATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS-3UTR CAA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACTTTGTTCATCTGGGTTaGAATTCTGCACCCAACTTG | + |
|
Preference number: 5 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHFVHLG*NSAPNL Trigger: CAAGTTGGGTGCAGAATTCAAACCCAGATGAACAAA...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS TCA 90 bp | ATCACAGCGCCTACACTTAATTTTATTTGTCCATGTGCCATCAACTaGTTGGGGAAGGCAATGTTCTTGAATGCTGGATTCTGTGTAGGA | + |
|
Preference number: 5 (lower is better) Translates to: ITAPTLNFICPCAIN*LGKAMFLNAGFCVG Trigger: TCCTACACAGAATCCAGCATTCAAGAACATTGCCTTCCCCAATCAGTTGATGGCACATGGACAAATAAAATTAAGTGTAGGCGCTGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CCA 90 bp | TTCTTCTTTATTAGCATTTGTGTGGAGTACTTTAGGGCTTTGCCTTaGTTTGCAGTGTGTACTCTTATAGAAACCTCTCCACTTGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: FFFISICVEYFRALP*FAVCTLIETSPLGQ Trigger: CTGGCCAAGTGGAGAGGTTTCTATAAGAGTACACACTGCAAACCAAGGCAAAGCCCTAAAGTACTCCACACAAATGCTAATAAAGAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS-3UTR CAA 90 bp | TGTGTGCTGCTCTTGCACAACCACTGTCTAGGTTTTAAGATCATTCCAAGTCACCTGGGGTTTTTCAAATaGGCAACTTTGCTTCGAATA | + |
|
Preference number: 5 (lower is better) Translates to: CVLLLHNHCLGFKIIPSHLGFFK*ATLLRI Trigger: TATTCGAAGCAAAGTTGCCAATTTGAAAAACCCCAG...GTGACTTGGAATGATCTTAAAACCTAGACAGTGGTTGTGCAAGAGCAGCACACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112188.8 |
||
| CDS TCA 90 bp | CATTCAGAGTCATCACCCTTCAAATATCCTTCATTAATTTCCATTTaGGCAGTGCTACTTTCAGATCCAATTGCTGCAGCAGGCTTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: HSESSPFKYPSLISI*AVLLSDPIAAAGFA Trigger: TGCAAAGCCTGCTGCAGCAATTGGATCTGAAAGTAGCACTGCTCAAATGGAAATTAATGAAGGATATTTGAAGGGTGATGACTCTGAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS GCA 90 bp | GTAAGCTGTTTACCAATATCCTCAAAATACCTTTTAGACACCAGTTaGTCAATCAAGGAAGCCCTGGCAATGATTTGGTTCTTGTCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: VSCLPISSKYLLDTS*SIKEALAMIWFLSD Trigger: GTCTGACAAGAACCAAATCATTGCCAGGGCTTCCTTGATTGAGCAACTGGTGTCTAAAAGGTATTTTGAGGATATTGGTAAACAGCTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112187.2 ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CCA 72 bp | TCAGATCCAATTGCTGCAGCAGGCTTTGCAGCATCTTaGGGTAACAGCCTAGAGAGAGAACTGCAGAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: SDPIAAAGFAAS*GNSLERELQRP Trigger: GGGTCTCTGCAGTTCTCTCTCTAGGCTGTTACCCCAAGATGCTGCAAAGCCTGCTGCAGCAATTGGATCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS TCA 72 bp | ACTGCAGAGACCCATGATCTCACTATGGCTAGAGCCTaGGGTTTCATCCTGGCTTACATCCTGAGAAACTGC | + |
|
Preference number: 6 (lower is better) Translates to: TAETHDLTMARA*GFILAYILRNC Trigger: GCAGTTTCTCAGGATGTAAGCCAGGATGAAACCTCAGGCTCTAGCCATAGTGAGATCATGGGTCTCTGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS GCA 72 bp | TGTGTAGGAAGCTCTCAGTTGCTTGAGTTCCTGGCTTaGCATGTCCAAGACACTCATTTCAGCAAACTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: CVGSSQLLEFLA*HVQDTHFSKLP Trigger: AGGGAGTTTGCTGAAATGAGTGTCTTGGACATGGCAAGCCAGGAACTCAAGCAACTGAGAGCTTCCTACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CAA 72 bp | TTCTTGAATGCTGGATTCTGTGTAGGAAGCTCTCAGTaGCTTGAGTTCCTGGCTTGCCATGTCCAAGACACT | + |
|
Preference number: 6 (lower is better) Translates to: FLNAGFCVGSSQ*LEFLACHVQDT Trigger: AGTGTCTTGGACATGGCAAGCCAGGAACTCAAGCAACTGAGAGCTTCCTACACAGAATCCAGCATTCAAGAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS TCA 72 bp | TCTACGCACTTAGATCTCACAGACACTAAAGTACCTTaGAACACACCTGAGCTCTTGCGAGTGCATTCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: STHLDLTDTKVP*NTPELLRVHSE Trigger: CTCTGAATGCACTCGCAAGAGCTCAGGTGTGTTTCAAGGTACTTTAGTGTCTGTGAGATCTAAGTGCGTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS TCA 72 bp | AACTTGGAAGGAAAAGTGTTCCTCTGGCAATCACAGTaGCCTTGCAGTTGTATTTATCACAGCGCCTACACT | + |
|
Preference number: 6 (lower is better) Translates to: NLEGKVFLWQSQ*PCSCIYHSAYT Trigger: AGTGTAGGCGCTGTGATAAATACAACTGCAAGGTCACTGTGATTGCCAGAGGAACACTTTTCCTTCCAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS GCA 72 bp | CAGACACTAAAGTACCTTGAAACACACCTGAGCTCTTaGGAGTGCATTCAGAGTCATCACCCTTCAAATATC | + |
|
Preference number: 6 (lower is better) Translates to: QTLKYLETHLSS*ECIQSHHPSNI Trigger: GATATTTGAAGGGTGATGACTCTGAATGCACTCGCAAGAGCTCAGGTGTGTTTCAAGGTACTTTAGTGTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CCA 72 bp | TCTTATAGAAACCTCTCCACTTGGCCAGCAGACACTTaGCCTTCTTCTTTAAAGTCACTGATGGGCAGTTTT | + |
|
Preference number: 6 (lower is better) Translates to: SYRNLSTWPADT*PSSLKSLMGSF Trigger: AAAACTGCCCATCAGTGACTTTAAAGAAGAAGGCCAAGTGTCTGCTGGCCAAGTGGAGAGGTTTCTATAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CCA 72 bp | GTTTGCAGTGTGTACTCTTATAGAAACCTCTCCACTTaGCCAGCAGACACTTGGCCTTCTTCTTTAAAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: VCSVYSYRNLST*PADTWPSSLKS Trigger: TGACTTTAAAGAAGAAGGCCAAGTGTCTGCTGGCCAAGTGGAGAGGTTTCTATAAGAGTACACACTGCAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CAA 72 bp | TTGCCATGTCCAAGACACTCATTTCAGCAAACTCCCTaGCAGACATGGTTCCAGAGAGGAAGTTTTGTTGTA | + |
|
Preference number: 6 (lower is better) Translates to: LPCPRHSFQQTP*QTWFQRGSFVV Trigger: TACAACAAAACTTCCTCTCTGGAACCATGTCTGCAAGGGAGTTTGCTGAAATGAGTGTCTTGGACATGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CAA 90 bp | GTTCCTGGCTTGCCATGTCCAAGACACTCATTTCAGCAAACTCCCTaGCAGACATGGTTCCAGAGAGGAAGTTTTGTTGTAAATGAAAAT | + |
|
Preference number: 6 (lower is better) Translates to: VPGLPCPRHSFQQTP*QTWFQRGSFVVNEN Trigger: ATTTTCATTTACAACAAAACTTCCTCTCTGGAACCATGTCTGCAAGGGAGTTTGCTGAAATGAGTGTCTTGGACATGGCAAGCCAGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS TCA 72 bp | TGGCTAGAGCCTGAGGTTTCATCCTGGCTTACATCCTaGGAAACTGCTGCACTTTCTTCTTTATTAGCATTT | + |
|
Preference number: 6 (lower is better) Translates to: WLEPEVSSWLTS*ETAALSSLLAF Trigger: AAATGCTAATAAAGAAGAAAGTGCAGCAGTTTCTCAGGATGTAAGCCAGGATGAAACCTCAGGCTCTAGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS GCA 72 bp | CTAAAGTACCTTGAAACACACCTGAGCTCTTGCGAGTaGATTCAGAGTCATCACCCTTCAAATATCCTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LKYLETHLSSCE*IQSHHPSNILH Trigger: ATGAAGGATATTTGAAGGGTGATGACTCTGAATGCACTCGCAAGAGCTCAGGTGTGTTTCAAGGTACTTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CAA 90 bp | GCATTCAGAGTCATCACCCTTCAAATATCCTTCATTAATTTCCATTaGAGCAGTGCTACTTTCAGATCCAATTGCTGCAGCAGGCTTTGC | + |
|
Preference number: 6 (lower is better) Translates to: AFRVITLQISFINFH*SSATFRSNCCSRLC Trigger: GCAAAGCCTGCTGCAGCAATTGGATCTGAAAGTAGCACTGCTCAAATGGAAATTAATGAAGGATATTTGAAGGGTGATGACTCTGAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CCA 72 bp | ATTAGCATTTGTGTGGAGTACTTTAGGGCTTTGCCTTaGTTTGCAGTGTGTACTCTTATAGAAACCTCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: ISICVEYFRALP*FAVCTLIETSP Trigger: TGGAGAGGTTTCTATAAGAGTACACACTGCAAACCAAGGCAAAGCCCTAAAGTACTCCACACAAATGCTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CCA 72 bp | GAAACTGCTGCACTTTCTTCTTTATTAGCATTTGTGTaGAGTACTTTAGGGCTTTGCCTTGGTTTGCAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: ETAALSSLLAFV*STLGLCLGLQC Trigger: ACACTGCAAACCAAGGCAAAGCCCTAAAGTACTCCACACAAATGCTAATAAAGAAGAAAGTGCAGCAGTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CAA 90 bp | CTTGGAAGGAAAAGTGTTCCTCTGGCAATCACAGTGACCTTGCAGTaGTATTTATCACAGCGCCTACACTTAATTTTATTTGTCCATGTG | + |
|
Preference number: 6 (lower is better) Translates to: LGRKSVPLAITVTLQ*YLSQRLHLILFVHV Trigger: CACATGGACAAATAAAATTAAGTGTAGGCGCTGTGATAAATACAACTGCAAGGTCACTGTGATTGCCAGAGGAACACTTTTCCTTCCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CAA 90 bp | ACCCAACTTGGAAGGAAAAGTGTTCCTCTGGCAATCACAGTGACCTaGCAGTTGTATTTATCACAGCGCCTACACTTAATTTTATTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: TQLGRKSVPLAITVT*QLYLSQRLHLILFV Trigger: GACAAATAAAATTAAGTGTAGGCGCTGTGATAAATACAACTGCAAGGTCACTGTGATTGCCAGAGGAACACTTTTCCTTCCAAGTTGGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
||
| CDS CAA 90 bp | AGTAAGCTGTTTACCAATATCCTCAAAATACCTTTTAGACACCAGTaGCTCAATCAAGGAAGCCCTGGCAATGATTTGGTTCTTGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SKLFTNILKIPFRHQ*LNQGSPGNDLVLVR Trigger: TCTGACAAGAACCAAATCATTGCCAGGGCTTCCTTGATTGAGCAACTGGTGTCTAAAAGGTATTTTGAGGATATTGGTAAACAGCTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112187.2 ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CAA 90 bp | TGCACTTTCTTCTTTATTAGCATTTGTGTGGAGTACTTTAGGGCTTaGCCTTGGTTTGCAGTGTGTACTCTTATAGAAACCTCTCCACTT | + |
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Preference number: 6 (lower is better) Translates to: CTFFFISICVEYFRA*PWFAVCTLIETSPL Trigger: AAGTGGAGAGGTTTCTATAAGAGTACACACTGCAAACCAAGGCAAAGCCCTAAAGTACTCCACACAAATGCTAATAAAGAAGAAAGTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CAA 72 bp | GTCATCACCCTTCAAATATCCTTCATTAATTTCCATTaGAGCAGTGCTACTTTCAGATCCAATTGCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VITLQISFINFH*SSATFRSNCCS Trigger: GCTGCAGCAATTGGATCTGAAAGTAGCACTGCTCAAATGGAAATTAATGAAGGATATTTGAAGGGTGATGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CAA 72 bp | TTTACCAATATCCTCAAAATACCTTTTAGACACCAGTaGCTCAATCAAGGAAGCCCTGGCAATGATTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: FTNILKIPFRHQ*LNQGSPGNDLV Trigger: AACCAAATCATTGCCAGGGCTTCCTTGATTGAGCAACTGGTGTCTAAAAGGTATTTTGAGGATATTGGTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112187.2 ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CAA 72 bp | TTCTTTATTAGCATTTGTGTGGAGTACTTTAGGGCTTaGCCTTGGTTTGCAGTGTGTACTCTTATAGAAACC | + |
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Preference number: 6 (lower is better) Translates to: FFISICVEYFRA*PWFAVCTLIET Trigger: GGTTTCTATAAGAGTACACACTGCAAACCAAGGCAAAGCCCTAAAGTACTCCACACAAATGCTAATAAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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| CDS CAA 72 bp | AAAAGTGTTCCTCTGGCAATCACAGTGACCTTGCAGTaGTATTTATCACAGCGCCTACACTTAATTTTATTT | + |
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Preference number: 6 (lower is better) Translates to: KSVPLAITVTLQ*YLSQRLHLILF Trigger: AAATAAAATTAAGTGTAGGCGCTGTGATAAATACAACTGCAAGGTCACTGTGATTGCCAGAGGAACACTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112188.8 ENSMUST00000180322.2 |
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