Pregenerated sensors for TCEAL9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042712

Ensembl transcript IDs: ENSMUST00000048687.11, ENSMUST00000113115.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	GATGGGCAAAGGTCTTATCAGGAAAATGCTAATGAAAAGAAAGCTAGATCGCAATGTTTCTCACTTTCCTaGTCTCATCTAGCTCCTCCA	+
Preference number: 4 (lower is better) Translates to: DGQRSYQENANEKKARSQCFSLS*SHLAPP Trigger: TGGAGGAGCTAGATGAGATCAGGAAAGTGAGAAACA...TTGCGATCTAGCTTTCTTTTCATTAGCATTTTCCTGATAAGACCTTTGCCCATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS-3UTR TCA 90 bp	CAACAGATTCAAAGTAGGAAGATGGGCAAAGGTCTTATCAGGAAAATGCTAATGTGTTTCTCACTTTCCTaGTCTCATCTAGCTCCTCCA	+
Preference number: 4 (lower is better) Translates to: QQIQSRKMGKGLIRKMLMCFSLS*SHLAPP Trigger: TGGAGGAGCTAGATGAGATCAGGAAAGTGAGAAACA...CATTAGCATTTTCCTGATAAGACCTTTGCCCATCTTCCTACTTTGAATCTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS-3UTR TCA 90 bp	ATTCAAAGTAGGAAGATGGGCAAAGGTCTTATCAGGAAAATGCTAATGAAAAGATTGTGTATATCCTCCTaGAAATCCTGCAGAGACCGG	+
Preference number: 4 (lower is better) Translates to: IQSRKMGKGLIRKMLMKRLCISS*KSCRDR Trigger: CCGGTCTCTGCAGGATTTTCAGGAGGATATACACAA...TCTTTTCATTAGCATTTTCCTGATAAGACCTTTGCCCATCTTCCTACTTTGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS-3UTR TCA 90 bp	CTTATCAGGAAAATGCTAATGAAAAGAAAGCTAGATCGCAATGGTAACATCAGATTGTGTATATCCTCCTaGAAATCCTGCAGAGACCGG	+
Preference number: 4 (lower is better) Translates to: LIRKMLMKRKLDRNGNIRLCISS*KSCRDR Trigger: CCGGTCTCTGCAGGATTTTCAGGAGGATATACACAA...TCTGATGTTACCATTGCGATCTAGCTTTCTTTTCATTAGCATTTTCCTGATAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS TCA 90 bp	CTAAACAGATCATCACTGCTCAGGTGCCTGTTGTGTATATCCTCCTaGAAATCCTGCAGAGACCGGATCAGCCTCTCCCGAAAAGTTTCT	+
Preference number: 5 (lower is better) Translates to: LNRSSLLRCLLCISS*KSCRDRISLSRKVS Trigger: AGAAACTTTTCGGGAGAGGCTGATCCGGTCTCTGCAGGATTTTCAGGAGGATATACACAACAGGCACCTGAGCAGTGATGATCTGTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS-3UTR CAA 90 bp	CAACAGATTCAAAGTAGGAAGATGGGCAAAGGTCTTATCAGGAAAATGCTAATGCGCGTCACTATAAGTTaGTTTCTCACTTTCCTGATC	+
Preference number: 5 (lower is better) Translates to: QQIQSRKMGKGLIRKMLMRVTIS*FLTFLI Trigger: GATCAGGAAAGTGAGAAACAAACTTATAGTGACGCG...CATTAGCATTTTCCTGATAAGACCTTTGCCCATCTTCCTACTTTGAATCTGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS-3UTR CAA 90 bp	CTTATCAGGAAAATGCTAATGAAAAGAAAGCTAGATCGCAATGGTAACATCAGACGCGTCACTATAAGTTaGTTTCTCACTTTCCTGATC	+
Preference number: 5 (lower is better) Translates to: LIRKMLMKRKLDRNGNIRRVTIS*FLTFLI Trigger: GATCAGGAAAGTGAGAAACAAACTTATAGTGACGCG...TCTGATGTTACCATTGCGATCTAGCTTTCTTTTCATTAGCATTTTCCTGATAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS TCA 72 bp	TCATCACTGCTCAGGTGCCTGTTGTGTATATCCTCCTaGAAATCCTGCAGAGACCGGATCAGCCTCTCCCGA	+
Preference number: 6 (lower is better) Translates to: SSLLRCLLCISS*KSCRDRISLSR Trigger: TCGGGAGAGGCTGATCCGGTCTCTGCAGGATTTTCAGGAGGATATACACAACAGGCACCTGAGCAGTGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2
CDS CAA 72 bp	TGGCTTCGGTTAGCCTTCCAACGCGTCACTATAAGTTaGTTTCTCACTTTCCTGATCTCATCTAGCTCCTCC	+
Preference number: 6 (lower is better) Translates to: WLRLAFQRVTIS*FLTFLISSSSS Trigger: GGAGGAGCTAGATGAGATCAGGAAAGTGAGAAACAAACTTATAGTGACGCGTTGGAAGGCTAACCGAAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048687.11 ENSMUST00000113115.2

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