Pregenerated sensors for TCEAL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054034Ensembl transcript IDs: ENSMUST00000066819.11, ENSMUST00000151592.8
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ACAGTATACCATGAACATCTCTTCCATGCACATGGGTaGAAGTCCTTTACTAAAAGACATAGTGCTGTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: TVYHEHLFHAHG*KSFTKRHSAVC Trigger: GCAGACAGCACTATGTCTTTTAGTAAAGGACTTTCACCCATGTGCATGGAAGAGATGTTCATGGTATACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS-3UTR GCA 90 bp | GGTGAAAGTCCTTTACTAAAAGACATAGTGCTGTCTGCTGGTAACAGGAGTGACCCTTTCTGCTGTGCCTaGTCACCTGGCCCTCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GESPLLKDIVLSAGNRSDPFCCA*SPGPPS Trigger: GGAGGGAGGGCCAGGTGAGCAGGCACAGCAGAAAGG...GTCACTCCTGTTACCAGCAGACAGCACTATGTCTTTTAGTAAAGGACTTTCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS-3UTR CCA 90 bp | GGTGAAAGTCCTTTACTAAAAGACATAGTGCTGTCTGCTGGTAACAGGAGTGACTCTTCTAAGTCCTTCTaGCCCCTGCCTCCGCCGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GESPLLKDIVLSAGNRSDSSKSF*PLPPPP Trigger: GGGCGGCGGAGGCAGGGGCCAGAAGGACTTAGAAGA...GTCACTCCTGTTACCAGCAGACAGCACTATGTCTTTTAGTAAAGGACTTTCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS-3UTR TCA 90 bp | GGTGAAAGTCCTTTACTAAAAGACATAGTGCTGTCTGCTGGTAACAGGAGTGACTTCCTCAGCTCTTCCTaGGCCCTAGTCATATCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: GESPLLKDIVLSAGNRSDFLSSS*ALVISA Trigger: CGCAGATATGACTAGGGCTCAGGAAGAGCTGAGGAA...GTCACTCCTGTTACCAGCAGACAGCACTATGTCTTTTAGTAAAGGACTTTCACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS-3UTR GCA 90 bp | GAAAGCAGGGCTGGTAATATTTCCCATCAGAGAATCCAGAAGGAAAGGCTGAAGACTTCCTTCGTCTTCTaGCCTTCCCTTGTTTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ESRAGNISHQRIQKERLKTSFVF*PSLVFW Trigger: CCAGAAAACAAGGGAAGGGCAGAAGACGAAGGAAGT...CTTCAGCCTTTCCTTCTGGATTCTCTGATGGGAAATATTACCAGCCCTGCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS-3UTR TCA 90 bp | GGTGAAAGTCCTTTACTAAAAGACATAGTGCTGTCTGCTGGTAACAGGAGTGACCTTCCCCTCTGCATCTaGCTTGTCTTCATCTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: GESPLLKDIVLSAGNRSDLPLCI*LVFICF Trigger: AAAGCAGATGAAGACAAGTCAGATGCAGAGGGGAAG...GTCACTCCTGTTACCAGCAGACAGCACTATGTCTTTTAGTAAAGGACTTTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS GCA 90 bp | GACTTTCCCTGCTTCTCGGGCTTCCCCTCACCTTTCTGCTGTGCCTaGTCACCTGGCCCTCCCTCCACCTCTAGCTTGCCCTGGCGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: DFPCFSGFPSPFCCA*SPGPPSTSSLPWRA Trigger: AGCACGCCAGGGCAAGCTAGAGGTGGAGGGAGGGCCAGGTGAGCAGGCACAGCAGAAAGGTGAGGGGAAGCCCGAGAAGCAGGGAAAGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS GCA 90 bp | TCCCCGTCAGACTTTCCCTGCTTCTCGGGCTTCCCCTCACCTTTCTaGTGTGCCTGCTCACCTGGCCCTCCCTCCACCTCTAGCTTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: SPSDFPCFSGFPSPF*CACSPGPPSTSSLP Trigger: GGGCAAGCTAGAGGTGGAGGGAGGGCCAGGTGAGCAGGCACAGCAGAAAGGTGAGGGGAAGCCCGAGAAGCAGGGAAAGTCTGACGGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS-3UTR CAA 90 bp | GGTGAAAGTCCTTTACTAAAAGACATAGTGCTGTCTGCTGGTAACAGGAGTGACCCCTCTGCATCTGACTaGTCTTCATCTGCTTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: GESPLLKDIVLSAGNRSDPSASD*SSSAFP Trigger: AGGAAAAGCAGATGAAGACAAGTCAGATGCAGAGGG...GTCACTCCTGTTACCAGCAGACAGCACTATGTCTTTTAGTAAAGGACTTTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS CCA 72 bp | TTTTCTGCAGCCCGCGCCTCGCTGGCTGACTTTGCCTaGGAATCGGGCTTGCTCTCCCCTTGGCGCTTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: FSAARASLADFA*ESGLLSPWRLP Trigger: GGGCAAGCGCCAAGGGGAGAGCAAGCCCGATTCCCAGGCAAAGTCAGCCAGCGAGGCGCGGGCTGCAGAAAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066819.11 |
||
| CDS CCA 72 bp | TGCTCACCTGGCCCTCCCTCCACCTCTAGCTTGCCCTaGCGTGCTGGCTTCCCCTCTGCATCTGACTTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: CSPGPPSTSSLP*RAGFPSASDLS Trigger: AGACAAGTCAGATGCAGAGGGGAAGCCAGCACGCCAGGGCAAGCTAGAGGTGGAGGGAGGGCCAGGTGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066819.11 ENSMUST00000151592.8 |
||