Pregenerated sensors for TCEAL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044550Ensembl transcript IDs: ENSMUST00000060904.11, ENSMUST00000113100.2, ENSMUST00000128040.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCAGCAGGGCGCTTTTCTaGAGCCCGCGCCTCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GKRGQQCSFSSERSELKASRALF*SPRLAG Trigger: GCCAGCGAGGCGCGGGCTGCAGAAAAGCGCCCTGCT...GGCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | TATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGACCTCCTCCTCTGGCTTaGCCTGGCGTGGTGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: YLPGKAGPAVFFLLREVRPPPLA*PGVVLA Trigger: AGCCAGCACCACGCCAGGGCAAGCCAGAGGAGGAGG...TCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CCA 90 bp | GGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCTCCCCGAGGGCCCCTaGGGACTAAAGCATCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GKAGPAVFFLLREVRIEGLPEGP*GLKHPV Trigger: CACAGGATGCTTTAGTCCCCAGGGGCCCTCGGGGAG...GCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | GGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCTCTCCCCTTGGCGCTTaGCCTCCCCGTCAGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: GKRGQQCSFSSERSELKASPLGA*PPRQTF Trigger: GAAAGTCTGACGGGGAGGGCAAGCGCCAAGGGGAGA...GGCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | TATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGATCTCCCCTTGGCGCTTaGCCTCCCCGTCAGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: YLPGKAGPAVFFLLREVRSPLGA*PPRQTF Trigger: GAAAGTCTGACGGGGAGGGCAAGCGCCAAGGGGAGA...TCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | GGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCTTGCCCTGGCGTGGTaGTGGCTTTGCTTTCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: GKAGPAVFFLLREVRIEGLALAW*WLCFLV Trigger: GACAAGAAAGCAAAGCCAGCACCACGCCAGGGCAAG...GCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | TACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGCTTGCCCTGGCGTGGTaGTGGCTTTGCTTTCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: YQGKRGQQCSFSSERSELLALAW*WLCFLV Trigger: GACAAGAAAGCAAAGCCAGCACCACGCCAGGGCAAG...CAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CCA 90 bp | TACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGTTGCCCTTGCTCATCTaGCTTTGCCTCCTCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: YQGKRGQQCSFSSERSELLPLLI*LCLLLW Trigger: CCAGAGGAGGAGGCAAAGCCAGATGAGCAAGGGCAA...CAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CCA 90 bp | CTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTTTGCCCTTGCTCATCTaGCTTTGCCTCCTCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LPGKAGPAVFFLLREVRILPLLI*LCLLLW Trigger: CCAGAGGAGGAGGCAAAGCCAGATGAGCAAGGGCAA...AATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | AAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCGCGTGGTGCTGGCTTTaGTTTCTTGTCTGGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KYLPGKAGPAVFFLLREVAWCWL*FLVWLL Trigger: GAGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGC...GACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | CTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGCGTGGTGCTGGCTTTaGTTTCTTGTCTGGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: LPGKAGPAVFFLLREVRIAWCWL*FLVWLL Trigger: GAGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGC...AATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR GCA 90 bp | TATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAGGCTTCCCCTCATCTTaGCCTTGCTCATCTGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: YLPGKAGPAVFFLLREVRGFPSS*PCSSGF Trigger: AAAGCCAGATGAGCAAGGGCAAGATGAGGGGAAGCC...TCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR TCA 90 bp | GGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCTTCTCGTCCTCGTCTaGCTTTTCTTCATCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GKAGPAVFFLLREVRIEGLLVLV*LFFIFR Trigger: CCTGAAGATGAAGAAAAGTCAGACGAGGACGAGAAG...GCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR TCA 90 bp | AAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCCTTCTCGTCCTCGTCTaGCTTTTCTTCATCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: KYLPGKAGPAVFFLLREVLLVLV*LFFIFR Trigger: CCTGAAGATGAAGAAAAGTCAGACGAGGACGAGAAG...GACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | GGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCGCCTCCTCCTCTGGCTaGCCCTGGCGTGGTGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: GKRGQQCSFSSERSELKAASSSG*PWRGAG Trigger: GCCAGCACCACGCCAGGGCAAGCCAGAGGAGGAGGC...GGCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS GCA 90 bp | CCGTCAGACTTTCCCTGCTTCTCGGGCTTCCCCTCATCTTGCCCTTaGTCATCTGGCTTTGCCTCCTCCTCTGGCTTGCCCTGGCGTGGT | + |
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Preference number: 5 (lower is better) Translates to: PSDFPCFSGFPSSCP*SSGFASSSGLPWRG Trigger: ACCACGCCAGGGCAAGCCAGAGGAGGAGGCAAAGCCAGATGAGCAAGGGCAAGATGAGGGGAAGCCCGAGAAGCAGGGAAAGTCTGACGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 ENSMUST00000128040.2 |
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| CDS CCA 90 bp | CTTTCCCTGCTTCTCGGGCTTCCCCTCATCTTGCCCTTGCTCATCTaGCTTTGCCTCCTCCTCTGGCTTGCCCTGGCGTGGTGCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: LSLLLGLPLILPLLI*LCLLLWLALAWCWL Trigger: AAGCCAGCACCACGCCAGGGCAAGCCAGAGGAGGAGGCAAAGCCAGATGAGCAAGGGCAAGATGAGGGGAAGCCCGAGAAGCAGGGAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 ENSMUST00000128040.2 |
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| CDS-3UTR CAA 90 bp | GGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCCCTCGCTGGCTGACTTaGCCTGGGAATCGGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: GKRGQQCSFSSERSELKAPRWLT*PGNRAC Trigger: GCAAGCCCGATTCCCAGGCAAAGTCAGCCAGCGAGG...GGCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | CTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTCCTCGCTGGCTGACTTaGCCTGGGAATCGGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: LPGKAGPAVFFLLREVRIPRWLT*PGNRAC Trigger: GCAAGCCCGATTCCCAGGCAAAGTCAGCCAGCGAGG...AATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | AAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCCCCCTCATCTTGCCCTaGCTCATCTGGCTTTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: KYLPGKAGPAVFFLLREVPLILP*LIWLCL Trigger: GAGGCAAAGCCAGATGAGCAAGGGCAAGATGAGGGG...GACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | CTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTCCCCTCATCTTGCCCTaGCTCATCTGGCTTTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LPGKAGPAVFFLLREVRIPLILP*LIWLCL Trigger: GAGGCAAAGCCAGATGAGCAAGGGCAAGATGAGGGG...AATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | AAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCGGGCTTCCCCTCATCTaGCCCTTGCTCATCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: KYLPGKAGPAVFFLLREVGLPLI*PLLIWL Trigger: AAGCCAGATGAGCAAGGGCAAGATGAGGGGAAGCCC...GACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | GGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCTCCTCCTGGGAGTTCTaGGGAGAATCATCTGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: GKRGQQCSFSSERSELKASSWEF*GESSVP Trigger: GGGGACAGATGATTCTCCCAAGAACTCCCAGGAGGA...GGCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | CAAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTGCTGGCTTTGCTTTCTaGTCTGGCTTCTCGTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: QVSTRESGASSVLSPQRGAGFAF*SGFSSS Trigger: CGAGGACGAGAAGCCAGACAAGAAAGCAAAGCCAGC...ACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | TATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAGCTGGCTTTGCTTTCTaGTCTGGCTTCTCGTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: YLPGKAGPAVFFLLREVRAGFAF*SGFSSS Trigger: CGAGGACGAGAAGCCAGACAAGAAAGCAAAGCCAGC...TCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | CAAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTGGCGTGGTGCTGGCTTaGCTTTCTTGTCTGGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QVSTRESGASSVLSPQRGGVVLA*LSCLAS Trigger: AGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGCC...ACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | TACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGGGCGTGGTGCTGGCTTaGCTTTCTTGTCTGGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: YQGKRGQQCSFSSERSELGVVLA*LSCLAS Trigger: AGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGCC...CAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | AAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCTCCTCCTGGGAGTTCTaGGGAGAATCATCTGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: KYLPGKAGPAVFFLLREVSSWEF*GESSVP Trigger: GGGGACAGATGATTCTCCCAAGAACTCCCAGGAGGA...GACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | GGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCAGAATTGAAGGCCCATCCTGTGCATCTCTaGGCACCCAGTGAAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: GKRGQQCSFSSERSELKAHPVHL*APSENH Trigger: GTGGTTTTCACTGGGTGCCAAGAGATGCACAGGATG...GGCCTTCAATTCTGACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS-3UTR CAA 90 bp | CAAGTATCTACCAGGGAAAGCGGGGCCAGCAGTGTTCTTTCTCCTCAGAGAGGTCATCCTGTGCATCTCTaGGCACCCAGTGAAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: QVSTRESGASSVLSPQRGHPVHL*APSENH Trigger: GTGGTTTTCACTGGGTGCCAAGAGATGCACAGGATG...ACCTCTCTGAGGAGAAAGAACACTGCTGGCCCCGCTTTCCCTGGTAGATACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 |
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| CDS GCA 72 bp | TGGCTTTGCCTCCTCCTCTGGCTTGCCCTGGCGTGGTaGTGGCTTTGCTTTCTTGTCTGGCTTCTCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: WLCLLLWLALAW*WLCFLVWLLVL Trigger: GAGGACGAGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGCCAGGGCAAGCCAGAGGAGGAGGCAAAGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 ENSMUST00000128040.2 |
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| CDS GCA 72 bp | TTTCCCTGCTTCTCGGGCTTCCCCTCATCTTGCCCTTaGTCATCTGGCTTTGCCTCCTCCTCTGGCTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: FPCFSGFPSSCP*SSGFASSSGLP Trigger: GGGCAAGCCAGAGGAGGAGGCAAAGCCAGATGAGCAAGGGCAAGATGAGGGGAAGCCCGAGAAGCAGGGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 ENSMUST00000128040.2 |
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| CDS CCA 72 bp | CTTTGCCTCCTCCTCTGGCTTGCCCTGGCGTGGTGCTaGCTTTGCTTTCTTGTCTGGCTTCTCGTCCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: LCLLLWLALAWC*LCFLVWLLVLV Trigger: GACGAGGACGAGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGCCAGGGCAAGCCAGAGGAGGAGGCAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 ENSMUST00000128040.2 |
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| CDS CCA 72 bp | ATCTGGCTTTGCCTCCTCCTCTGGCTTGCCCTGGCGTaGTGCTGGCTTTGCTTTCTTGTCTGGCTTCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: IWLCLLLWLALA*CWLCFLVWLLV Trigger: GACGAGAAGCCAGACAAGAAAGCAAAGCCAGCACCACGCCAGGGCAAGCCAGAGGAGGAGGCAAAGCCAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000060904.11 ENSMUST00000113100.2 ENSMUST00000128040.2 |
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