Pregenerated sensors for TCAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007877Ensembl transcript IDs: ENSMUST00000008021.3
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGGCTGAGCATTTATTGCAGTGCTACCAGAGGGTGCTGGGGGCCTaGCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTT | + |
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Preference number: 1 (lower is better) Translates to: MAEHLLQCYQRVLGA*PLPPSSHPPPFQSV Trigger: AACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGCCCCCAGCACCCTCTGGTAGCACTGCAATAAATGCTCAGCCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| 3UTR-3UTR CCA 90 bp | GGCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACATCGCTCCCTTCCCTGTaGGGACTCAGGACACCTAGG | + |
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Preference number: 2 (lower is better) Translates to: GLPTSTLFTSPSFPERCTSLPSL*GLRTPR Trigger: CCTAGGTGTCCTGAGTCCCCACAGGGAAGGGAGCGA...TGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| 3UTR CAA 90 bp | CCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTaGCACATCCTTCTCCTAGTCCATCTGTTCCCGAGCAGGCCATTC | + |
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Preference number: 2 (lower is better) Translates to: PAHFHPLHIPLLSRA*HILLLVHLFPSRPF Trigger: GAATGGCCTGCTCGGGAACAGATGGACTAGGAGAAGGATGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACATCCAGGAAGTGCCTAGCCTaGGACAGACACAGTGGAGTC | + |
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Preference number: 2 (lower is better) Translates to: LPTSTLFTSPSFPERCTSRKCLA*DRHSGV Trigger: GACTCCACTGTGTCTGTCTCAGGCTAGGCACTTCCT...GGATGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| 3UTR-3UTR CAA 90 bp | GGCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACATCTCACCAGGATCTCTaGTCTCTTCTTCTGGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: GLPTSTLFTSPSFPERCTSHQDL*SLLLGL Trigger: CAGCCCCAGAAGAAGAGACAAGAGATCCTGGTGAGA...TGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CCA 90 bp | GGGGCTGAGGGTGCTCAGCTCTCCACTCCTAGTGCCCGCCATCCTCGCTCCCTTCCTCGCGCTCCTCCTTaGAGGCCCCCACCTTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: GAEGAQLSTPSARHPRSLPRAPP*RPPPWW Trigger: CCACCAAGGTGGGGGCCTCCAAGGAGGAGCGCGAGG...AAGGGAGCGAGGATGGCGGGCACTAGGAGTGGAGAGCTGAGCACCCTCAGCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CCA 90 bp | GGGGCTGAGGGTGCTCAGCTCTCCACTCCTAGTGCCCGCCATCCTCGCTCCCTTATCTCAGCCACGTCCTaGCGCTCCACGCACTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GAEGAQLSTPSARHPRSLISATS*RSTHWP Trigger: CGGCCAGTGCGTGGAGCGCCAGGACGTGGCTGAGAT...AAGGGAGCGAGGATGGCGGGCACTAGGAGTGGAGAGCTGAGCACCCTCAGCCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR TCA 90 bp | GGGGCTGAGGGTGCTCAGCTCTCCACTCCTAGTGCCCGCCATCCTCGCTCCCTTGGGGAAGCTGCTTTGTaGTCTCAGCCACGTCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GAEGAQLSTPSARHPRSLGEAAL*SQPRPG Trigger: GCCAGGACGTGGCTGAGATCACAAAGCAGCTTCCCC...AAGGGAGCGAGGATGGCGGGCACTAGGAGTGGAGAGCTGAGCACCCTCAGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR TCA 90 bp | GCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACATGGGGCCCGGGTTTGCTaGCTGGCACCACAGGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ACPLPPSSHPPPFQSVAHGARVC*LAPQGE Trigger: TTCCCCCTGTGGTGCCAGTCAGCAAACCCGGGCCCC...ATGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CCA 90 bp | GGCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACAAGGGGCAGCACCCGCTaGTACGGCAGCTGGTATTCC | + |
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Preference number: 4 (lower is better) Translates to: GLPTSTLFTSPSFPERCTRGSTR*YGSWYS Trigger: GGAATACCAGCTGCCGTACCAGCGGGTGCTGCCCCT...TGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CCA 90 bp | GGCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACACCCGGGTTTGCTGACTaGCACCACAGGGGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: GLPTSTLFTSPSFPERCTPGFAD*HHRGKL Trigger: CAGCTTCCCCCTGTGGTGCCAGTCAGCAAACCCGGG...TGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR GCA 90 bp | TCCATCTGTTCCCGAGCAGGCCATTCCCAGGGGCCTCTCCTCTCACCAGGATCTACCACAGGGGGAAGCTaGTTTGTGATCTCAGCCACG | + |
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Preference number: 4 (lower is better) Translates to: SICSRAGHSQGPLLSPGSTTGGS*FVISAT Trigger: CGTGGCTGAGATCACAAAGCAGCTTCCCCCTGTGGT...AGATCCTGGTGAGAGGAGAGGCCCCTGGGAATGGCCTGCTCGGGAACAGATGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CCA 90 bp | GGCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACAGCTTCCCTGCGTTCCTaGTTCTCCTCAGACACTTGG | + |
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Preference number: 4 (lower is better) Translates to: GLPTSTLFTSPSFPERCTASLRS*FSSDTW Trigger: CCAAGTGTCTGAGGAGAACCAGGAACGCAGGGAAGC...TGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR TCA 90 bp | CAAACTACAAAGCAGCCACTGCCAGCAGCTCTCCTCCATTGTCCTAGCCAGGAACCACCTTGGTGGGCGTaGAGATGGGTAGGGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: QTTKQPLPAALLHCPSQEPPWWA*RWVGAA Trigger: TGCTGCCCCTACCCATCTTCACGCCCACCAAGGTGG...TTCCTGGCTAGGACAATGGAGGAGAGCTGCTGGCAGTGGCTGCTTTGTAGTTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CCA 90 bp | CAGGGGCCTCTCCTCTCACCAGGATCTCTTGTCTCTTCTTCTGGGGCTGAGGGTGAGCTTCCTGAGACATaGATCGAGACAGGGTACGGC | + |
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Preference number: 4 (lower is better) Translates to: QGPLLSPGSLVSSSGAEGELPET*IETGYG Trigger: GCCGTACCCTGTCTCGATCCATGTCTCAGGAAGCTC...ACCCTCAGCCCCAGAAGAAGAGACAAGAGATCCTGGTGAGAGGAGAGGCCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR GCA 90 bp | GCCTGCCCACTTCCACCCTCTTCACATCCCCCTCCTTTCCAGAGCGTTGCACATTGTGTATCCTCCTCGTaGAAGGAGCATCCCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: ACPLPPSSHPPPFQSVAHCVSSS*KEHPSS Trigger: GGAAGAGGGATGCTCCTTGCACGAGGAGGATACACA...ATGTGCAACGCTCTGGAAAGGAGGGGGATGTGAAGAGGGTGGAAGTGGGCAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS GCA 90 bp | CGGCGCAGGGGCCCGGGTTTGCTGACTGGCACCACAGGGGGAAGCTaGTTTGTGATCTCAGCCACGTCCTGGCGCTCCACGCACTGGCCG | + |
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Preference number: 5 (lower is better) Translates to: RRRGPGLLTGTTGGS*FVISATSWRSTHWP Trigger: CGGCCAGTGCGTGGAGCGCCAGGACGTGGCTGAGATCACAAAGCAGCTTCCCCCTGTGGTGCCAGTCAGCAAACCCGGGCCCCTGCGCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 90 bp | ACTGGCACCACAGGGGGAAGCTGCTTTGTGATCTCAGCCACGTCCTaGCGCTCCACGCACTGGCCGCCCAGGGCCGTCTCCAGGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TGTTGGSCFVISATS*RSTHWPPRAVSRAS Trigger: GCTGGCCCTGGAGACGGCCCTGGGCGGCCAGTGCGTGGAGCGCCAGGACGTGGCTGAGATCACAAAGCAGCTTCCCCCTGTGGTGCCAGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS TCA 90 bp | GGGTCTCCTCGCGCTCCTCCTTGGAGGCCCCCACCTTGGTGGGCGTaGAGATGGGTAGGGGCAGCACCCGCTGGTACGGCAGCTGGTATT | + |
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Preference number: 5 (lower is better) Translates to: GSPRAPPWRPPPWWA*RWVGAAPAGTAAGI Trigger: AATACCAGCTGCCGTACCAGCGGGTGCTGCCCCTACCCATCTTCACGCCCACCAAGGTGGGGGCCTCCAAGGAGGAGCGCGAGGAGACCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 90 bp | GCCCCCACCTTGGTGGGCGTGAAGATGGGTAGGGGCAGCACCCGCTaGTACGGCAGCTGGTATTCCTGTAGCCCACGGCCGAGGATACCC | + |
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Preference number: 5 (lower is better) Translates to: APTLVGVKMGRGSTR*YGSWYSCSPRPRIP Trigger: GGGTATCCTCGGCCGTGGGCTACAGGAATACCAGCTGCCGTACCAGCGGGTGCTGCCCCTACCCATCTTCACGCCCACCAAGGTGGGGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CAA 90 bp | CTCAGCTCTCCACTCCTAGTGCCCGCCATCCTCGCTCCCTTCCCTGTGGGGACTTCCTCGCGCTCCTCCTaGGAGGCCCCCACCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LSSPLLVPAILAPFPVGTSSRSS*EAPTLV Trigger: CACCAAGGTGGGGGCCTCCAAGGAGGAGCGCGAGGA...AGTCCCCACAGGGAAGGGAGCGAGGATGGCGGGCACTAGGAGTGGAGAGCTGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 90 bp | GTGGGCGTGAAGATGGGTAGGGGCAGCACCCGCTGGTACGGCAGCTaGTATTCCTGTAGCCCACGGCCGAGGATACCCAGGCGCATCACC | + |
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Preference number: 5 (lower is better) Translates to: VGVKMGRGSTRWYGS*YSCSPRPRIPRRIT Trigger: GGTGATGCGCCTGGGTATCCTCGGCCGTGGGCTACAGGAATACCAGCTGCCGTACCAGCGGGTGCTGCCCCTACCCATCTTCACGCCCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 90 bp | CATGGATCGAGACAGGGTACGGCGCAGGGGCCCGGGTTTGCTGACTaGCACCACAGGGGGAAGCTGCTTTGTGATCTCAGCCACGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: HGSRQGTAQGPGFAD*HHRGKLLCDLSHVL Trigger: CAGGACGTGGCTGAGATCACAAAGCAGCTTCCCCCTGTGGTGCCAGTCAGCAAACCCGGGCCCCTGCGCCGTACCCTGTCTCGATCCATG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CAA 90 bp | CTGGGCAAACTACAAAGCAGCCACTGCCAGCAGCTCTCCTCCATTGTCCTAGCCCGCAGGGGCCCGGGTTaGCTGACTGGCACCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: LGKLQSSHCQQLSSIVLARRGPG*LTGTTG Trigger: CCCTGTGGTGCCAGTCAGCAAACCCGGGCCCCTGCG...GGCTAGGACAATGGAGGAGAGCTGCTGGCAGTGGCTGCTTTGTAGTTTGCCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS-3UTR CAA 90 bp | GGCCTCTCCTCTCACCAGGATCTCTTGTCTCTTCTTCTGGGGCTGAGGGTGCTCTTGGAGGCCCCCACCTaGGTGGGCGTGAAGATGGGT | + |
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Preference number: 5 (lower is better) Translates to: GLSSHQDLLSLLLGLRVLLEAPT*VGVKMG Trigger: ACCCATCTTCACGCCCACCAAGGTGGGGGCCTCCAA...GAGCACCCTCAGCCCCAGAAGAAGAGACAAGAGATCCTGGTGAGAGGAGAGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 72 bp | GGGCCGTCTCCAGGGCCAGCAGCTCCCGAAGCTGGATaGGGGTCTCCTCGCGCTCCTCCTTGGAGGCCCCCA | + |
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Preference number: 6 (lower is better) Translates to: GPSPGPAAPEAG*GSPRAPPWRPP Trigger: TGGGGGCCTCCAAGGAGGAGCGCGAGGAGACCCCCATCCAGCTTCGGGAGCTGCTGGCCCTGGAGACGGCCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 72 bp | CCCAGGGCCGTCTCCAGGGCCAGCAGCTCCCGAAGCTaGATGGGGGTCTCCTCGCGCTCCTCCTTGGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: PRAVSRASSSRS*MGVSSRSSLEA Trigger: GGCCTCCAAGGAGGAGCGCGAGGAGACCCCCATCCAGCTTCGGGAGCTGCTGGCCCTGGAGACGGCCCTGGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 72 bp | ACAGGGGGAAGCTGCTTTGTGATCTCAGCCACGTCCTaGCGCTCCACGCACTGGCCGCCCAGGGCCGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TGGSCFVISATS*RSTHWPPRAVS Trigger: GGAGACGGCCCTGGGCGGCCAGTGCGTGGAGCGCCAGGACGTGGCTGAGATCACAAAGCAGCTTCCCCCTGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS TCA 72 bp | ACGGCCGAGGATACCCAGGCGCATCACCAGCCATGGTaGGCGCTGTACCACCGCCTGACACTGTCCCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: TAEDTQAHHQPW*ALYHRLTLSLP Trigger: CGGCAGGGACAGTGTCAGGCGGTGGTACAGCGCTCACCATGGCTGGTGATGCGCCTGGGTATCCTCGGCCGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CAA 72 bp | TCCCGAAGCTGGATGGGGGTCTCCTCGCGCTCCTCCTaGGAGGCCCCCACCTTGGTGGGCGTGAAGATGGGT | + |
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Preference number: 6 (lower is better) Translates to: SRSWMGVSSRSS*EAPTLVGVKMG Trigger: ACCCATCTTCACGCCCACCAAGGTGGGGGCCTCCAAGGAGGAGCGCGAGGAGACCCCCATCCAGCTTCGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS GCA 72 bp | GGCCCGGGTTTGCTGACTGGCACCACAGGGGGAAGCTaGTTTGTGATCTCAGCCACGTCCTGGCGCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: GPGLLTGTTGGS*FVISATSWRST Trigger: CGTGGAGCGCCAGGACGTGGCTGAGATCACAAAGCAGCTTCCCCCTGTGGTGCCAGTCAGCAAACCCGGGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 72 bp | TTGGTGGGCGTGAAGATGGGTAGGGGCAGCACCCGCTaGTACGGCAGCTGGTATTCCTGTAGCCCACGGCCG | + |
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Preference number: 6 (lower is better) Translates to: LVGVKMGRGSTR*YGSWYSCSPRP Trigger: CGGCCGTGGGCTACAGGAATACCAGCTGCCGTACCAGCGGGTGCTGCCCCTACCCATCTTCACGCCCACCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 72 bp | AAGATGGGTAGGGGCAGCACCCGCTGGTACGGCAGCTaGTATTCCTGTAGCCCACGGCCGAGGATACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: KMGRGSTRWYGS*YSCSPRPRIPR Trigger: CCTGGGTATCCTCGGCCGTGGGCTACAGGAATACCAGCTGCCGTACCAGCGGGTGCTGCCCCTACCCATCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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| CDS CCA 72 bp | AGACAGGGTACGGCGCAGGGGCCCGGGTTTGCTGACTaGCACCACAGGGGGAAGCTGCTTTGTGATCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RQGTAQGPGFAD*HHRGKLLCDLS Trigger: GCTGAGATCACAAAGCAGCTTCCCCCTGTGGTGCCAGTCAGCAAACCCGGGCCCCTGCGCCGTACCCTGTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008021.3 |
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