RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBX3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018604

Ensembl transcript IDs: ENSMUST00000018748.9, ENSMUST00000079719.11, ENSMUST00000121021.8

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGCCCCTCTTCTCTCTGCCCCAACGAAAGTACTCAGCAATTGGTaGGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCC +
Preference number: 1 (lower is better)
Translates to: KAPLLSAPTKVLSNW*VSVFIDSSTGLHLP
Trigger: GGGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTGAGTACTTTCGTTGGGGCAGAGAGAAGAGGGGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR GCA 90 bp TCACCCCATGTGGAAGGCCCGTGGTTTATTTTACATCTAACAAAGTaGACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGG +
Preference number: 1 (lower is better)
Translates to: SPHVEGPWFILHLTK*TGRFDQTGMERPWG
Trigger: CCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTTTGTTAGATGTAAAATAAACCACGGGCCTTCCACATGGGGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR TCA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGCCTCCCAGACAAAACTaGAAGGGACAGGGCGGGGGT +
Preference number: 2 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWPPRQN*KGQGGG
Trigger: ACCCCCGCCCTGTCCCTTTCAGTTTTGTCTGGGAGG...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR TCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGCCTCCCAGACAAAACTaGAAGGGACAGGGCGGGGGT +
Preference number: 2 (lower is better)
Translates to: APSVPRFKATAAWLHSPWPPRQN*KGQGGG
Trigger: ACCCCCGCCCTGTCCCTTTCAGTTTTGTCTGGGAGG...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR TCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGCCTCCCAGACAAAACTaGAAGGGACAGGGCGGGGGT +
Preference number: 2 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLPPRQN*KGQGGG
Trigger: ACCCCCGCCCTGTCCCTTTCAGTTTTGTCTGGGAGG...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR GCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCACACAAAAGCCTGTTTaGCACCACTCCTCCCGCCCC +
Preference number: 2 (lower is better)
Translates to: SGEVSQRPALLAGLATLFTQKPV*HHSSRP
Trigger: GGGGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGT...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCTGGTTACACAGCCCATaGTGGCAGGGCCTGTGGTAT +
Preference number: 2 (lower is better)
Translates to: QRPALLAGLATLFFSPDFWLHSP*WQGLWY
Trigger: ATACCACAGGCCCTGCCACCATGGGCTGTGTAACCA...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR CAA 90 bp GGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTaGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGTCGC +
Preference number: 2 (lower is better)
Translates to: GEVSQRPALLAGLAT*FFSPDFHTSLHKSR
Trigger: GCGACTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTTGACCAAACTGGAATaGAGAGACCTTGGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: APSVPRFKATAAWLHSPWLTKLE*RDLGGG
Trigger: CCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAA...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCTGGTTACACAGCCCATaGTGGCAGGGCCTGTGGTAT +
Preference number: 2 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAWLHSP*WQGLWY
Trigger: ATACCACAGGCCCTGCCACCATGGGCTGTGTAACCA...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR GCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGACACAAAAGCCTGTTTaGCACCACTCCTCCCGCCCC +
Preference number: 2 (lower is better)
Translates to: EFREFQVEPGRAITSPILTQKPV*HHSSRP
Trigger: GGGGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGT...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCACCCGCGCTCCTGGCTaGCCTGGCTACCTTGTTCTT +
Preference number: 2 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPTRAPG*PGYLVL
Trigger: AAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGT...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR GCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTTACATCTAACAAAGTaGACTGGCAGATTTGACCAA +
Preference number: 2 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLLHLTK*TGRFDQ
Trigger: TTGGTCAAATCTGCCAGTGCACTTTGTTAGATGTAA...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGTTGACCAAACTGGAATaGAGAGACCTTGGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: EFREFQVEPGRAITSPILLTKLE*RDLGGG
Trigger: CCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAA...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR GCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGTTACATCTAACAAAGTaGACTGGCAGATTTGACCAA +
Preference number: 2 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVLHLTK*TGRFDQ
Trigger: TTGGTCAAATCTGCCAGTGCACTTTGTTAGATGTAA...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR GCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCTTTCATGCCCATAGCTaGCCCTTTTACCCCACTTCC +
Preference number: 2 (lower is better)
Translates to: IQLKELMVQQAHEALYKRFHAHS*PFYPTS
Trigger: GGAAGTGGGGTAAAAGGGGCAGCTATGGGCATGAAA...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR GCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCTTACATCTAACAAAGTaGACTGGCAGATTTGACCAA +
Preference number: 2 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPLHLTK*TGRFDQ
Trigger: TTGGTCAAATCTGCCAGTGCACTTTGTTAGATGTAA...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CAA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGAGTGCACTGGCAGATTaGACCAAACTGGAATGGAGA +
Preference number: 3 (lower is better)
Translates to: APSVPRFKATAAWLHSPWSALAD*TKLEWR
Trigger: TCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACT...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CAA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAAAGTGCACTGGCAGATTaGACCAAACTGGAATGGAGA +
Preference number: 3 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPESALAD*TKLEWR
Trigger: TCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACT...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGAGTGCACTGGCAGATTaGACCAAACTGGAATGGAGA +
Preference number: 3 (lower is better)
Translates to: EFREFQVEPGRAITSPILSALAD*TKLEWR
Trigger: TCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACT...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CAA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTGACACAAAAGCCTGTTaGCCACCACTCCTCCCGCCC +
Preference number: 3 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPDTKAC*PPLLPP
Trigger: GGGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTC...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR TCA 72 bp GTTTATTTTACATCTAACAAAGTGCACTGGCAGATTTaGCCAAACTGGAATGGAGAGACCTTGGGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: VYFTSNKVHWQI*PNWNGETLGEG
Trigger: CCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTTTGTTAGATGTAAAATAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR TCA 72 bp CTTCTCTCTGCCCCAACGAAAGTACTCAGCAATTGGTaGGTTTCAGTCTTCATAGACAGTTCCACAGGACTT +
Preference number: 3 (lower is better)
Translates to: LLSAPTKVLSNW*VSVFIDSSTGL
Trigger: AAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTGAGTACTTTCGTTGGGGCAGAGAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR-3UTR CAA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCACCTCCATATTGGTTTaGTTAGTTTGTTTAGGAGGG +
Preference number: 3 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPTSILV*LVCLGG
Trigger: CCCTCCTAAACAAACTAACAAAACCAATATGGAGGT...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGAGGAACGGGTGGCGGTaGACGGAGCTGGAGGCGGCC +
Preference number: 4 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWRNGWR*TELEAA
Trigger: GGCCGCCTCCAGCTCCGTGCACCGCCACCCGTTCCT...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTCCGCGGGGAACAGCTaGGCCCTGGTTGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWSAGNS*ALVAGL
Trigger: CAGCCCAGCAACCAGGGCGCAGCTGTTCCCCGCGGA...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCAGGAACGGGTGGCGGTaGACGGAGCTGGAGGCGGCC +
Preference number: 4 (lower is better)
Translates to: SRPLSPAFQSNSSLVTQPRNGWR*TELEAA
Trigger: GGCCGCCTCCAGCTCCGTGCACCGCCACCCGTTCCT...GGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCCACAGCCACCGAGGCTaGGCTGGCTGCCAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFHSHRG*AGCQGG
Trigger: GCCGCCCTGGCAGCCAGCCCAGCCTCGGTGGCTGTG...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCCCTGGTTGCTGGGCTaGCCTTGTCGCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFPWLLG*PCRGLA
Trigger: AGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGG...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCCCAGTACCGCGCTCATaGCGAAGTCCGGCGCCCGGT +
Preference number: 4 (lower is better)
Translates to: SRPLSPAFQSNSSLVTQPPVPRS*RSPAPG
Trigger: ACCGGGCGCCGGACTTCGCCATGAGCGCGGTACTGG...GGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCGCGTGCTGGACGAGATaGTGGCCGGGCTATGGCGCG +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFACWTR*WPGYGA
Trigger: CGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGC...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGATGCTCCGGATACTGTaGCCAGCAGGGGCCCCATGC +
Preference number: 4 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWMLRIL*PAGAPC
Trigger: GCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCAT...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCGGCCGTGCTCCTCCTTaGTCTCAGCCTCGGCGTCAC +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFGRAPP*SQPRRH
Trigger: GTGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCC...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGCCCTGGTTGCTGGGCTaGCCTTGTCGCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLPWLLG*PCRGLA
Trigger: AGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGG...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGAGGAACGGGTGGCGGTaGACGGAGCTGGAGGCGGCC +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVRNGWR*TELEAA
Trigger: GGCCGCCTCCAGCTCCGTGCACCGCCACCCGTTCCT...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGGCGTGCTGGACGAGATaGTGGCCGGGCTATGGCGCG +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLACWTR*WPGYGA
Trigger: CGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGC...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCCCGGAACTCGCGTGCTaGACGAGATGGTGGCCGGGC +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFPELAC*TRWWPG
Trigger: GCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGG...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGCCGGAACTCGCGTGCTaGACGAGATGGTGGCCGGGC +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLPELAC*TRWWPG
Trigger: GCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGG...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGACTTTGGACATCCATTaGTCCCCCGTAGCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWTLDIH*SPVAGL
Trigger: CAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGT...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGCAGGCCTCAGGGCCGTaGTCCTCCTTGCTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLQASGP*SSLLSA
Trigger: GGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTG...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCTGCCCGTTGAAGAACTaGTGGCCCGCAAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: SRPLSPAFQSNSSLVTQPCPLKN*WPARPG
Trigger: CCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGGGCA...GGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCTGCTGGACGAGATGGTaGCCGGGCTATGGCGCGAGT +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFCWTRW*PGYGAS
Trigger: ACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCA...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGGAGCGAAGGCGTCCTTaGCAGGAATCGCGCGCGCCT +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWERRRP*QESRAP
Trigger: AGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTC...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGCCGTTGAAGAACTGCTaGCCCGCAAGGCCTGGGGCG +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWPLKNC*PARPGA
Trigger: CGCCCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGG...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCATGCTCCGGATACTGTaGCCAGCAGGGGCCCCATGC +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFMLRIL*PAGAPC
Trigger: GCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCAT...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGGGTGGAAGGGCAGGGTaGCAGCCGACGCCCCAGACA +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVGGRAG*QPTPQT
Trigger: TGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACC...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGAAAGCAGTTGAAGGCTaGCTGCTCGCTGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWKAVEG*LLAGGL
Trigger: GAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTT...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGGGCCCCTGCGCTAGGTaGGCGGTGGCGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKGPCAR*AVASVC
Trigger: GCAGACAGACGCCACCGCGCACCTAGCGCAGGGGCC...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGCTGGACGAGATGGTaGCCGGGCTATGGCGCGAGT +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLCWTRW*PGYGAS
Trigger: ACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCA...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTCACAGCCACCGAGGCTaGGCTGGCTGCCAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFHSHRG*AGCQGG
Trigger: GCCGCCCTGGCAGCCAGCCCAGCCTCGGTGGCTGTG...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGCCTGGGCAAAGCAGTTaGAGGCTGCCTGCTCGCTGG +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVPGQSS*RLPARW
Trigger: CCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGG...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGCCCCTGCGCTAGGTaGGCGGTGGCGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEGPCAR*AVASVC
Trigger: GCAGACAGACGCCACCGCGCACCTAGCGCAGGGGCC...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCGGAGGCTGCAGCTGCTaGAGCCATGTATGTGTAGGG +
Preference number: 4 (lower is better)
Translates to: SRPLSPAFQSNSSLVTQPGGCSC*SHVCVG
Trigger: CCCTACACATACATGGCTGCAGCAGCTGCAGCCTCC...GGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGAGCCGCTGGATACTCTaGAGTTCGCTGGTAGCCGCC +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLSRWIL*SSLVAA
Trigger: GGCGGCTACCAGCGAACTGCAGAGTATCCAGCGGCT...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGCGTGCTGGACGAGATaGTGGCCGGGCTATGGCGCG +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAACWTR*WPGYGA
Trigger: CGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCCCGGAACTCGCGTGCTaGACGAGATGGTGGCCGGGC +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAPELAC*TRWWPG
Trigger: GCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGG...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGGGTGGAAGGGCAGGGTaGCAGCCGACGCCCCAGACA +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKGGRAG*QPTPQT
Trigger: TGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACC...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCGCCAGAACGTGTTGTTaGAGGTGGAAGGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFARTCC*RWKGRV
Trigger: CACCCTGCCCTTCCACCTCCAACAACACGTTCTGGC...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR CAA 72 bp TCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTaGTTCTTCAGCCCCGACTTCCATACCAGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: SQRPALLAGLAT*FFSPDFHTSLH
Trigger: GTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTGGCTTCCAAGCCACTaGCCAGCCGCTGGATACTCT +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFWLPSH*PAAGYS
Trigger: AGAGTATCCAGCGGCTGGTCAGTGGCTTGGAAGCCA...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTGGCATTTCGGGGTCTaGCTTACCGGCCACCATCCA +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFWHFGV*LTGHHP
Trigger: TGGATGGTGGCCGGTAAGGCAGACCCCGAAATGCCA...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGGCCGTGCTCCTCCTTaGTCTCAGCCTCGGCGTCAC +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAGRAPP*SQPRRH
Trigger: GTGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGCAGGCCTCAGGGCCGTaGTCCTCCTTGCTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKQASGP*SSLLSA
Trigger: GGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTG...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCAGGCCTCAGGGCCGTaGTCCTCCTTGCTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGQASGP*SSLLSA
Trigger: GGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTG...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGGCCGCGGTGGAGGCTaGAGCTGCTGCAGCCATGTA +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAGRGGG*SCCSHV
Trigger: TACATGGCTGCAGCAGCTGCAGCCTCCACCGCGGCC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAACCAGTACCGCGCTCATaGCGAAGTCCGGCGCCCGGT +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEPVPRS*RSPAPG
Trigger: ACCGGGCGCCGGACTTCGCCATGAGCGCGGTACTGG...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGGCACTGGGACGGGGATaGAATAGGGGCTGTAACGCA +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLALGRG*NRGCNA
Trigger: TGCGTTACAGCCCCTATTCCATCCCCGTCCCAGTGC...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCAGCCAGAGGACAGCGTaGACGAGCGGCTGTTCAGTT +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFSQRTA*TSGCSV
Trigger: AACTGAACAGCCGCTCGTCCACGCTGTCCTCTGGCT...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGCCACTAACTGATCCATaGTGGGCTTGGCCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLPLTDP*WAWPEL
Trigger: GAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGG...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGAGAGCGGGTGCCCGTTaGAGAACTGCTGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGRAGAR*RTAGPQ
Trigger: TTGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCT...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCGCATGCTGTTCAAATTaGGGAACGGGTGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFACCSN*GTGGGA
Trigger: TGCACCGCCACCCGTTCCTCAATTTGAACAGCATGC...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGTGGCTTCCAAGCCACTaGCCAGCCGCTGGATACTCT +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVWLPSH*PAAGYS
Trigger: AGAGTATCCAGCGGCTGGTCAGTGGCTTGGAAGCCA...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGAAAGCAGTTGAAGGCTaGCTGCTCGCTGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLKAVEG*LLAGGL
Trigger: GAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTT...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCGGTGGAGGCTGCAGCTaGTGCAGCCATGTATGTGTA +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFGGGCS*CSHVCV
Trigger: TACACATACATGGCTGCAGCAGCTGCAGCCTCCACC...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCGCAGGAGAGGATGCCTaGGCAAAGCAGTTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFAGEDA*AKQLKA
Trigger: AGCCTTCAACTGCTTTGCCCAGGCATCCTCTCCTGC...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTCCGTTGAAGAACTGCTaGCCCGCAAGGCCTGGGGCG +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFPLKNC*PARPGA
Trigger: CGCCCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGG...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGGCACTGGGACGGGGATaGAATAGGGGCTGTAACGCA +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVALGRG*NRGCNA
Trigger: TGCGTTACAGCCCCTATTCCATCCCCGTCCCAGTGC...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGGCTGCAAGACCTGTCTaGCTTGGCTTCCAAGCCACT +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWAARPV*LGFQAT
Trigger: AGTGGCTTGGAAGCCAAGCCAGACAGGTCTTGCAGC...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAACCTGGGCAAAGCAGTTaGAGGCTGCCTGCTCGCTGG +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEPGQSS*RLPARW
Trigger: CCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGG...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCGACAGCAGGAGAGGATaGCTGGGCAAAGCAGTTGAA +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFDSRRG*LGKAVE
Trigger: TTCAACTGCTTTGCCCAGGCATCCTCTCCTGCTGTC...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTTGCCCGTTGAAGAACTaGTGGCCCGCAAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFCPLKN*WPARPG
Trigger: CCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGGGCA...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGAGCCGCTGGATACTCTaGAGTTCGCTGGTAGCCGCC +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGSRWIL*SSLVAA
Trigger: GGCGGCTACCAGCGAACTGCAGAGTATCCAGCGGCT...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGAAGAAAGGCGGCTGGTaGCCCAGTACCGCGCTCATG +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKKKGGW*PSTALM
Trigger: CATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTT...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTTGGCTCTGACGATGTaGAACCGCGGCTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWLALTM*NRGWYL
Trigger: TAAGTACCAGCCGCGGTTCCACATCGTCAGAGCCAA...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGGGTGGAAGGGCAGGGTaGCAGCCGACGCCCCAGACA +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILGGRAG*QPTPQT
Trigger: TGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACC...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCACGTGTTGTTGGAGGTaGAAGGGCAGGGTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPATCCWR*KGRVAA
Trigger: GGCTGCCACCCTGCCCTTCCACCTCCAACAACACGT...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGACGTGTTGTTGGAGGTaGAAGGGCAGGGTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKTCCWR*KGRVAA
Trigger: GGCTGCCACCCTGCCCTTCCACCTCCAACAACACGT...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTCTCGGAGCAGAGTTTaGGTGACAAGGACACTGAGC +
Preference number: 4 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLSRSRV*VTRTLS
Trigger: GCTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGA...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGGATATCGTTGGCTCTaGCGATGTGGAACCGCGGCT +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAGYRWL*RCGTAA
Trigger: AGCCGCGGTTCCACATCGTCAGAGCCAACGATATCC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGGACAGCAGGAGAGGATaGCTGGGCAAAGCAGTTGAA +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVDSRRG*LGKAVE
Trigger: TTCAACTGCTTTGCCCAGGCATCCTCTCCTGCTGTC...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCGGCCCCTGCGCTAGGTaGGCGGTGGCGTCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRGPCAR*AVASVC
Trigger: GCAGACAGACGCCACCGCGCACCTAGCGCAGGGGCC...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGGGAGGCTGCAGCTGCTaGAGCCATGTATGTGTAGGG +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKGGCSC*SHVCVG
Trigger: CCCTACACATACATGGCTGCAGCAGCTGCAGCCTCC...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGGGAGGCTGCAGCTGCTaGAGCCATGTATGTGTAGGG +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGGGCSC*SHVCVG
Trigger: CCCTACACATACATGGCTGCAGCAGCTGCAGCCTCC...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
57% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAAAAGAAAGGCGGCTGGTaGCCCAGTACCGCGCTCATG +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEKKGGW*PSTALM
Trigger: CATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTT...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGCTTCTTCGGGTTCCATaGTCTTCAGAGGCCTCAGAT +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWLLRVP*SSEASD
Trigger: ATCTGAGGCCTCTGAAGACCATGGAACCCGAAGAAG...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGGAGCGAAGGCGTCCTTaGCAGGAATCGCGCGCGCCT +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILERRRP*QESRAP
Trigger: AGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTC...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGCCGTTGAAGAACTGCTaGCCCGCAAGGCCTGGGGCG +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILPLKNC*PARPGA
Trigger: CGCCCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGG...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGATATCGTTGGCTCTaGCGATGTGGAACCGCGGCT +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEGYRWL*RCGTAA
Trigger: AGCCGCGGTTCCACATCGTCAGAGCCAACGATATCC...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGCCTGGGCAAAGCAGTTaGAGGCTGCCTGCTCGCTGG +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILPGQSS*RLPARW
Trigger: CCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGG...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGCATGCTGTTCAAATTaGGGAACGGGTGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAACCSN*GTGGGA
Trigger: TGCACCGCCACCCGTTCCTCAATTTGAACAGCATGC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGGCATGCTGTTCAAATTaGGGAACGGGTGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKACCSN*GTGGGA
Trigger: TGCACCGCCACCCGTTCCTCAATTTGAACAGCATGC...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATGGCTTCCAAGCCACTaGCCAGCCGCTGGATACTCT +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEWLPSH*PAAGYS
Trigger: AGAGTATCCAGCGGCTGGTCAGTGGCTTGGAAGCCA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATGGCATTTCGGGGTCTaGCTTACCGGCCACCATCCA +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEWHFGV*LTGHHP
Trigger: TGGATGGTGGCCGGTAAGGCAGACCCCGAAATGCCA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTATTCCCCTGCCACGTTaGGTGATCGCTTGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFIPLPR*VIAWEG
Trigger: GCCTTCCCAAGCGATCACGCAACGTGGCAGGGGAAT...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS-3UTR GCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCCCCTGGTTGCTGGGCTaGCCTTGTCGCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPPWLLG*PCRGLA
Trigger: AGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGG...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCTCCGCGGGGAACAGCTaGGCCCTGGTTGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRSAGNS*ALVAGL
Trigger: CAGCCCAGCAACCAGGGCGCAGCTGTTCCCCGCGGA...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGCTTCTTCGGGTTCCATaGTCTTCAGAGGCCTCAGAT +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVLLRVP*SSEASD
Trigger: ATCTGAGGCCTCTGAAGACCATGGAACCCGAAGAAG...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGGCAGGAGAGGATGCCTaGGCAAAGCAGTTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGAGEDA*AKQLKA
Trigger: AGCCTTCAACTGCTTTGCCCAGGCATCCTCTCCTGC...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGCAGGAGAGGATGCCTaGGCAAAGCAGTTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAAGEDA*AKQLKA
Trigger: AGCCTTCAACTGCTTTGCCCAGGCATCCTCTCCTGC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGATGCTCCGGATACTGTaGCCAGCAGGGGCCCCATGC +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILMLRIL*PAGAPC
Trigger: GCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCAT...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTGCCAGAACGTGTTGTTaGAGGTGGAAGGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFARTCC*RWKGRV
Trigger: CACCCTGCCCTTCCACCTCCAACAACACGTTCTGGC...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTAAATTGAGGAACGGGTaGCGGTGCACGGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFKLRNG*RCTELE
Trigger: CTCCAGCTCCGTGCACCGCCACCCGTTCCTCAATTT...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTGCACTGGGACGGGGATaGAATAGGGGCTGTAACGCA +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFALGRG*NRGCNA
Trigger: TGCGTTACAGCCCCTATTCCATCCCCGTCCCAGTGC...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTAGCCAGAGGACAGCGTaGACGAGCGGCTGTTCAGTT +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFSQRTA*TSGCSV
Trigger: AACTGAACAGCCGCTCGTCCACGCTGTCCTCTGGCT...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGGCTGCAAGACCTGTCTaGCTTGGCTTCCAAGCCACT +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGAARPV*LGFQAT
Trigger: AGTGGCTTGGAAGCCAAGCCAGACAGGTCTTGCAGC...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAACCACTAACTGATCCATaGTGGGCTTGGCCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEPLTDP*WAWPEL
Trigger: GAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGG...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTCCACTAACTGATCCATaGTGGGCTTGGCCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFPLTDP*WAWPEL
Trigger: GAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGG...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCATCCACCGAGAGTTGTaGAATTTATATCGACAGTCG +
Preference number: 4 (lower is better)
Translates to: QRPALLAGLATLFFSPDFIHREL*NLYRQS
Trigger: CGACTGTCGATATAAATTTCACAACTCTCGGTGGAT...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGGAAGTCTCCTTCTTATaGCTCTCCTCAAACACTCTC +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWEVSFL*LSSNTL
Trigger: GAGAGTGTTTGAGGAGAGGCATAAGAAGGAGACTTC...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAAAAAGCAGTTGAAGGCTaGCTGCTCGCTGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEKAVEG*LLAGGL
Trigger: GAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTT...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp TGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCCATACCAGCCTGCACAAAAGGACAGCAGGAGAGGATaGCTGGGCAAAGCAGTTGAA +
Preference number: 4 (lower is better)
Translates to: WPGYLVLQPRLPYQPAQKDSRRG*LGKAVE
Trigger: TTCAACTGCTTTGCCCAGGCATCCTCTCCTGCTGTC...CTTTTGTGCAGGCTGGTATGGAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTGGTGGAGGCTGCAGCTaGTGCAGCCATGTATGTGTA +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFGGGCS*CSHVCV
Trigger: TACACATACATGGCTGCAGCAGCTGCAGCCTCCACC...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCGAGCGAAGGCGTCCTTaGCAGGAATCGCGCGCGCCT +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPERRRP*QESRAP
Trigger: AGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTC...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCACAGCCACCGAGGCTaGGCTGGCTGCCAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPHSHRG*AGCQGG
Trigger: GCCGCCCTGGCAGCCAGCCCAGCCTCGGTGGCTGTG...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGTCTCGGAGCAGAGTTTaGGTGACAAGGACACTGAGC +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGSRSRV*VTRTLS
Trigger: GCTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGA...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATCTGTACCCCGCTTGTaGAACTGGTCCCAAAGTTCC +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPESVPRL*NWSQSS
Trigger: GGAACTTTGGGACCAGTTTCACAAGCGGGGTACAGA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCATCCACCGAGAGTTGTaGAATTTATATCGACAGTCG +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFIHREL*NLYRQS
Trigger: CGACTGTCGATATAAATTTCACAACTCTCGGTGGAT...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCAGAGCGGGTGCCCGTTaGAGAACTGCTGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRRAGAR*RTAGPQ
Trigger: TTGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCT...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGTGGCATTTCGGGGTCTaGCTTACCGGCCACCATCCA +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILWHFGV*LTGHHP
Trigger: TGGATGGTGGCCGGTAAGGCAGACCCCGAAATGCCA...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCTGCCCGTTGAAGAACTaGTGGCCCGCAAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPCPLKN*WPARPG
Trigger: CCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGGGCA...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGGTGAGTTTCAGTTTGTaGAAAGTGACGACTTTGGAC +
Preference number: 4 (lower is better)
Translates to: APSVPRFKATAAWLHSPWVSFSL*KVTTLD
Trigger: GTCCAAAGTCGTCACTTTCCACAAACTGAAACTCAC...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATTGGCTCTGACGATGTaGAACCGCGGCTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPELALTM*NRGWYL
Trigger: TAAGTACCAGCCGCGGTTCCACATCGTCAGAGCCAA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCTGCTGGACGAGATGGTaGCCGGGCTATGGCGCGAGT +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPCWTRW*PGYGAS
Trigger: ACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCA...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGGCCAGAACGTGTTGTTaGAGGTGGAAGGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILARTCC*RWKGRV
Trigger: CACCCTGCCCTTCCACCTCCAACAACACGTTCTGGC...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGAGCCAGAGGACAGCGTaGACGAGCGGCTGTTCAGTT +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILSQRTA*TSGCSV
Trigger: AACTGAACAGCCGCTCGTCCACGCTGTCCTCTGGCT...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATCTCGGAGCAGAGTTTaGGTGACAAGGACACTGAGC +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPESRSRV*VTRTLS
Trigger: GCTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
3UTR CAA 72 bp CAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTaGGTGAAAATAGTTAGGAGTACTCCCGATCCCACC +
Preference number: 4 (lower is better)
Translates to: QVEPGRAITSPI*VKIVRSTPDPT
Trigger: GGTGGGATCGGGAGTACTCCTAACTATTTTCACCAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGATCCACCGAGAGTTGTaGAATTTATATCGACAGTCG +
Preference number: 4 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVIHREL*NLYRQS
Trigger: CGACTGTCGATATAAATTTCACAACTCTCGGTGGAT...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCCCCTGCCACGTTGCGTaGTCGCTTGGGAAGGCCAAA +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPPCHVA*SLGKAK
Trigger: TTTGGCCTTCCCAAGCGATCACGCAACGTGGCAGGG...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS-3UTR CCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCCAGTACCGCGCTCATaGCGAAGTCCGGCGCCCGGT +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPPVPRS*RSPAPG
Trigger: ACCGGGCGCCGGACTTCGCCATGAGCGCGGTACTGG...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAACTTCTTCGGGTTCCATaGTCTTCAGAGGCCTCAGAT +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPELLRVP*SSEASD
Trigger: ATCTGAGGCCTCTGAAGACCATGGAACCCGAAGAAG...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTATATACATTCTCTTTaGCATTTCGGGGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: SGEVSQRPALLAGLATLFYIHSL*HFGVCL
Trigger: AAGGCAGACCCCGAAATGCCAAAGAGAATGTATATA...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCACGTGTTGTTGGAGGTaGAAGGGCAGGGTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPTCCWR*KGRVAA
Trigger: GGCTGCCACCCTGCCCTTCCACCTCCAACAACACGT...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCACTTTGGACATCCATTaGTCCCCCGTAGCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRTLDIH*SPVAGL
Trigger: CAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGT...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTGGCCGCGGTGGAGGCTaGAGCTGCTGCAGCCATGTA +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPGRGGG*SCCSHV
Trigger: TACATGGCTGCAGCAGCTGCAGCCTCCACCGCGGCC...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGTTGGCTCTGACGATGTaGAACCGCGGCTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILLALTM*NRGWYL
Trigger: TAAGTACCAGCCGCGGTTCCACATCGTCAGAGCCAA...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCAAATTGAGGAACGGGTaGCGGTGCACGGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRKLRNG*RCTELE
Trigger: CTCCAGCTCCGTGCACCGCCACCCGTTCCTCAATTT...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGTCAGTTTGTGGAAAGTaGCGACTTTGGACATCCATT +
Preference number: 4 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGSVCGK*RLWTSI
Trigger: AATGGATGTCCAAAGTCGTCACTTTCCACAAACTGA...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTAGAGCGGGTGCCCGTTaGAGAACTGCTGGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPRAGAR*RTAGPQ
Trigger: TTGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCT...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATCAGTTTGTGGAAAGTaGCGACTTTGGACATCCATT +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPESVCGK*RLWTSI
Trigger: AATGGATGTCCAAAGTCGTCACTTTCCACAAACTGA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGTCTCGAAAACCCTTTaGAAAGGGATTGTTGTCTAT +
Preference number: 4 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAVSKTL*KGIVVY
Trigger: ATAGACAACAATCCCTTTGCAAAGGGTTTTCGAGAC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTGTGAGTTTCAGTTTGTaGAAAGTGACGACTTTGGAC +
Preference number: 4 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFVSFSL*KVTTLD
Trigger: GTCCAAAGTCGTCACTTTCCACAAACTGAAACTCAC...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTGGATATCGTTGGCTCTaGCGATGTGGAACCGCGGCT +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPGYRWL*RCGTAA
Trigger: AGCCGCGGTTCCACATCGTCAGAGCCAACGATATCC...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGTCTCGAAAACCCTTTaGAAAGGGATTGTTGTCTAT +
Preference number: 4 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEVSKTL*KGIVVY
Trigger: ATAGACAACAATCCCTTTGCAAAGGGTTTTCGAGAC...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCCGTTGCGTGATCGCTTaGGAAGGCCAAAGTAAATCC +
Preference number: 4 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPRCVIA*EGQSKS
Trigger: GGATTTACTTTGGCCTTCCCAAGCGATCACGCAACG...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS-3UTR CCA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGGTGAGTTTCAGTTTGTaGAAAGTGACGACTTTGGAC +
Preference number: 4 (lower is better)
Translates to: EFREFQVEPGRAITSPILVSFSL*KVTTLD
Trigger: GTCCAAAGTCGTCACTTTCCACAAACTGAAACTCAC...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTTCTGTACCCCGCTTGTaGAACTGGTCCCAAAGTTCC +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPSVPRL*NWSQSS
Trigger: GGAACTTTGGGACCAGTTTCACAAGCGGGGTACAGA...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCGAAGTCTCCTTCTTATaGCTCTCCTCAAACACTCTC +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKREVSFL*LSSNTL
Trigger: GAGAGTGTTTGAGGAGAGGCATAAGAAGGAGACTTC...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCGTCTCGAAAACCCTTTaGAAAGGGATTGTTGTCTAT +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRVSKTL*KGIVVY
Trigger: ATAGACAACAATCCCTTTGCAAAGGGTTTTCGAGAC...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CCA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCTATATACATTCTCTTTaGCATTTCGGGGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: IQLKELMVQQAHEALYKRYIHSL*HFGVCL
Trigger: AAGGCAGACCCCGAAATGCCAAAGAGAATGTATATA...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR GCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTGAAGTCTCCTTCTTATaGCTCTCCTCAAACACTCTC +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPEVSFL*LSSNTL
Trigger: GAGAGTGTTTGAGGAGAGGCATAAGAAGGAGACTTC...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR TCA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTTCAGTTTGTGGAAAGTaGCGACTTTGGACATCCATT +
Preference number: 4 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPSVCGK*RLWTSI
Trigger: AATGGATGTCCAAAGTCGTCACTTTCCACAAACTGA...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp GTCGCGGGCCCGGCTGGGCTCCGCGGGGAACAGCTGCGCCCTGGTTaGTGGGCTGCCCTTGTCGCGGCCTGGCTCCTCGGCCGTAGTGGT +
Preference number: 5 (lower is better)
Translates to: VAGPAGLRGEQLRPG*WAALVAAWLLGRSG
Trigger: ACCACTACGGCCGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGGCGCAGCTGTTCCCCGCGGAGCCCAGCCGGGCCCGCGAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp CGTGCTGGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTGGCGATaGCTTGTCCAGACGCGCGGTGTCGCGGGCCCGGCTGGGCTCCGC +
Preference number: 5 (lower is better)
Translates to: RAGRDGGRAMARVWR*LVQTRGVAGPAGLR
Trigger: GCGGAGCCCAGCCGGGCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp AACTCGCGTGCTGGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTaGCGATGCCTTGTCCAGACGCGCGGTGTCGCGGGCCCGGCTGGG +
Preference number: 5 (lower is better)
Translates to: NSRAGRDGGRAMARV*RCLVQTRGVAGPAG
Trigger: CCCAGCCGGGCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGAGCGCCGCGGCGCCGTaGGGAGGCAGCGTTAGCGCG +
Preference number: 5 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWSAAAP*GGSVSA
Trigger: CGCGCTAACGCTGCCTCCCAACGGCGCCGCGGCGCT...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp CCTCGCGCCCGGGACTCCTGCGCTCATCAGCTCCCGGAACTCGCGTaGTGGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTGGCGATG +
Preference number: 5 (lower is better)
Translates to: PRARDSCAHQLPELA*WTRWWPGYGASLAM
Trigger: CATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTCCCGGGCGCGAGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp GCCGGTGGATGCTCCGGATACTGTGGCCAGCAGGGGCCCCATGCCTaGAGCCATGCTAGAGAAGGCGCCGCCCATGGCGAACTGGCCCGG +
Preference number: 5 (lower is better)
Translates to: AGGCSGYCGQQGPHA*SHAREGAAHGELAR
Trigger: CCGGGCCAGTTCGCCATGGGCGGCGCCTTCTCTAGCATGGCTGCAGGCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCATCCACCGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp CGCGCCCGGGACTCCTGCGCTCATCAGCTCCCGGAACTCGCGTGCTaGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTGGCGATGCCT +
Preference number: 5 (lower is better)
Translates to: RARDSCAHQLPELAC*TRWWPGYGASLAMP
Trigger: AGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTCCCGGGCGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp TGGAGGTGGAAGGGCAGGGTGGCAGCCGACGCCCCAGACAGTCCCTaGGCTGCGGCAGCCGAGGCCATGGCTGTGGATTCTAGGCCTGAG +
Preference number: 5 (lower is better)
Translates to: WRWKGRVAADAPDSP*AAAAEAMAVDSRPE
Trigger: CTCAGGCCTAGAATCCACAGCCATGGCCTCGGCTGCCGCAGCGCAGGGACTGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp TCAGCTCCCGGAACTCGCGTGCTGGACGAGATGGTGGCCGGGCTATaGCGCGAGTCTGGCGATGCCTTGTCCAGACGCGCGGTGTCGCGG +
Preference number: 5 (lower is better)
Translates to: SAPGTRVLDEMVAGL*RESGDALSRRAVSR
Trigger: CCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp GTCCTTGGCAGGAATCGCGCGCGCCTCATCCACCTTGGTGGCGACTaGACCCTCGCGCCCGGGACTCCTGCGCTCATCAGCTCCCGGAAC +
Preference number: 5 (lower is better)
Translates to: VLGRNRARLIHLGGD*TLAPGTPALISSRN
Trigger: GTTCCGGGAGCTGATGAGCGCAGGAGTCCCGGGCGCGAGGGTCCAGTCGCCACCAAGGTGGATGAGGCGCGCGCGATTCCTGCCAAGGAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp GCGCGGTGGCGTCTGTCTGCACCGACAGTGGAGCGAAGGCGTCCTTaGCAGGAATCGCGCGCGCCTCATCCACCTTGGTGGCGACTGGAC +
Preference number: 5 (lower is better)
Translates to: ARWRLSAPTVERRRP*QESRAPHPPWWRLD
Trigger: GTCCAGTCGCCACCAAGGTGGATGAGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTCCACTGTCGGTGCAGACAGACGCCACCGCGC
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp CGGCAGCCGAGGCCATGGCTGTGGATTCTAGGCCTGAGACGCCGGTaGATGCTCCGGATACTGTGGCCAGCAGGGGCCCCATGCCTGCAG +
Preference number: 5 (lower is better)
Translates to: RQPRPWLWILGLRRR*MLRILWPAGAPCLQ
Trigger: CTGCAGGCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCATCCACCGGCGTCTCAGGCCTAGAATCCACAGCCATGGCCTCGGCTGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp CAGCCGACGCCCCAGACAGTCCCTGCGCTGCGGCAGCCGAGGCCATaGCTGTGGATTCTAGGCCTGAGACGCCGGTGGATGCTCCGGATA +
Preference number: 5 (lower is better)
Translates to: QPTPQTVPALRQPRP*LWILGLRRRWMLRI
Trigger: TATCCGGAGCATCCACCGGCGTCTCAGGCCTAGAATCCACAGCCATGGCCTCGGCTGCCGCAGCGCAGGGACTGTCTGGGGCGTCGGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCAGCGCCGCGGCGCCGTaGGGAGGCAGCGTTAGCGCG +
Preference number: 5 (lower is better)
Translates to: SGEVSQRPALLAGLATLFSAAAP*GGSVSA
Trigger: CGCGCTAACGCTGCCTCCCAACGGCGCCGCGGCGCT...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGGGGCCGTGCTCCTCCTaGCTCTCAGCCTCGGCGTCA +
Preference number: 5 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWGPCSS*LSASAS
Trigger: TGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCC...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp GCCGTAGTGGTGGAAATCTTGGCCGCGTCGCAGGCCTCAGGGCCGTaGTCCTCCTTGCTCTCAGCCTCGGCGTCACTCTCGGCTTCGCTG +
Preference number: 5 (lower is better)
Translates to: AVVVEILAASQASGP*SSLLSASASLSASL
Trigger: CAGCGAAGCCGAGAGTGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTGCGACGCGGCCAAGATTTCCACCACTACGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp TCCTGCGCTCATCAGCTCCCGGAACTCGCGTGCTGGACGAGATGGTaGCCGGGCTATGGCGCGAGTCTGGCGATGCCTTGTCCAGACGCG +
Preference number: 5 (lower is better)
Translates to: SCAHQLPELACWTRW*PGYGASLAMPCPDA
Trigger: CGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp ACGCCCCAGACAGTCCCTGCGCTGCGGCAGCCGAGGCCATGGCTGTaGATTCTAGGCCTGAGACGCCGGTGGATGCTCCGGATACTGTGG +
Preference number: 5 (lower is better)
Translates to: TPQTVPALRQPRPWL*ILGLRRRWMLRILW
Trigger: CCACAGTATCCGGAGCATCCACCGGCGTCTCAGGCCTAGAATCCACAGCCATGGCCTCGGCTGCCGCAGCGCAGGGACTGTCTGGGGCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp GGCGACATAGCCAAGCCCTGGGAGGCCAGAACGTGTTGTTGGAGGTaGAAGGGCAGGGTGGCAGCCGACGCCCCAGACAGTCCCTGCGCT +
Preference number: 5 (lower is better)
Translates to: GDIAKPWEARTCCWR*KGRVAADAPDSPCA
Trigger: AGCGCAGGGACTGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCCTCCCAGGGCTTGGCTATGTCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGAGCGCCGCGGCGCCGTaGGGAGGCAGCGTTAGCGCG +
Preference number: 5 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVSAAAP*GGSVSA
Trigger: CGCGCTAACGCTGCCTCCCAACGGCGCCGCGGCGCT...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS TCA 90 bp ATGAGAAAGGGATGCCGGTCTCAGCAGCCCCCACTAACTGATCCATaGTGGGCTTGGCCAGAGCTCCGGGGAGCGAGAGCGCCGCGGCGC +
Preference number: 5 (lower is better)
Translates to: MRKGCRSQQPPLTDP*WAWPELRGARAPRR
Trigger: GCGCCGCGGCGCTCTCGCTCCCCGGAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGGGGGCTGCTGAGACCGGCATCCCTTTCTCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp TTAGCGCGGGGAAGAAAGGCGGCTGGTGGCCCAGTACCGCGCTCATaGCGAAGTCCGGCGCCCGGTGAGGTAGGAAGGGATGATAGGCCA +
Preference number: 5 (lower is better)
Translates to: LARGRKAAGGPVPRS*RSPAPGEVGRDDRP
Trigger: TGGCCTATCATCCCTTCCTACCTCACCGGGCGCCGGACTTCGCCATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTTCCCCGCGCTAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp GACTCCTGCGCTCATCAGCTCCCGGAACTCGCGTGCTGGACGAGATaGTGGCCGGGCTATGGCGCGAGTCTGGCGATGCCTTGTCCAGAC +
Preference number: 5 (lower is better)
Translates to: DSCAHQLPELACWTR*WPGYGASLAMPCPD
Trigger: GTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp CCGAAAGGCGACATAGCCAAGCCCTGGGAGGCCAGAACGTGTTGTTaGAGGTGGAAGGGCAGGGTGGCAGCCGACGCCCCAGACAGTCCC +
Preference number: 5 (lower is better)
Translates to: PKGDIAKPWEARTCC*RWKGRVAADAPDSP
Trigger: GGGACTGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCCTCCCAGGGCTTGGCTATGTCGCCTTTCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGGCCTGGGCAAAGCAGTaGAAGGCTGCCTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWAWAKQ*KAACSL
Trigger: CAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGC...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp TCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCGGGCCGTGCTCCTCCTaGCTCTCAGCCTCGGCGTCA +
Preference number: 5 (lower is better)
Translates to: SRPLSPAFQSNSSLVTQPGPCSS*LSASAS
Trigger: TGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCC...GGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGGTTGCTGGGCTGCCCTaGTCGCGGCCTGGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: APSVPRFKATAAWLHSPWVAGLP*SRPGSS
Trigger: CGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAAC...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp TCCGGTGAAGTCTCTCAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCGTTGCTGGGCTGCCCTaGTCGCGGCCTGGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: SGEVSQRPALLAGLATLFVAGLP*SRPGSS
Trigger: CGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAAC...GAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTGAGAGACTTCACCGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS TCA 90 bp CCCAGGGATGAGAAAGGGATGCCGGTCTCAGCAGCCCCCACTAACTaGTCCATGATGGGCTTGGCCAGAGCTCCGGGGAGCGAGAGCGCC +
Preference number: 5 (lower is better)
Translates to: PRDEKGMPVSAAPTN*SMMGLARAPGSESA
Trigger: GGCGCTCTCGCTCCCCGGAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGGGGGCTGCTGAGACCGGCATCCCTTTCTCATCCCTGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp TGGAAATCTTGGCCGCGTCGCAGGCCTCAGGGCCGTGCTCCTCCTTaGTCTCAGCCTCGGCGTCACTCTCGGCTTCGCTGGGACACAGAT +
Preference number: 5 (lower is better)
Translates to: WKSWPRRRPQGRAPP*SQPRRHSRLRWDTD
Trigger: ATCTGTGTCCCAGCGAAGCCGAGAGTGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTGCGACGCGGCCAAGATTTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGGTAGTGGTGGAAATCTaGGCCGCGTCGCAGGCCTCA +
Preference number: 5 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWVVVEI*AASQAS
Trigger: TGAGGCCTGCGACGCGGCCAAGATTTCCACCACTAC...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGGGCCAGAACGTGTTGTaGGAGGTGGAAGGGCAGGGT +
Preference number: 5 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWGQNVL*EVEGQG
Trigger: ACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCC...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp CGGAGCAGAGTTTGGGTGACAAGGACACTGAGCCAGAGGACAGCGTaGACGAGCGGCTGTTCAGTTCCGACCCCGAGTCCACAGCCACCG +
Preference number: 5 (lower is better)
Translates to: RSRVWVTRTLSQRTA*TSGCSVPTPSPQPP
Trigger: CGGTGGCTGTGGACTCGGGGTCGGAACTGAACAGCCGCTCGTCCACGCTGTCCTCTGGCTCAGTGTCCTTGTCACCCAAACTCTGCTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCACCACTCCTCCCGCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGCAAGACCTGTCTGGCTaGGCTTCCAAGCCACTGACC +
Preference number: 5 (lower is better)
Translates to: ATTPPAPSVPRFKATAAWQDLSG*ASKPLT
Trigger: GGTCAGTGGCTTGGAAGCCAAGCCAGACAGGTCTTG...CCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGCGGGAGGAGTGGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 90 bp ACGTCTTCTTCGGGTTCCATGGTCTTCAGAGGCCTCAGATGTGCCTaGGGTCCCAGGGATGAGAAAGGGATGCCGGTCTCAGCAGCCCCC +
Preference number: 5 (lower is better)
Translates to: TSSSGSMVFRGLRCA*GPRDEKGMPVSAAP
Trigger: GGGGGCTGCTGAGACCGGCATCCCTTTCTCATCCCTGGGACCCCAGGCACATCTGAGGCCTCTGAAGACCATGGAACCCGAAGAAGACGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CAAAGACCCGCGCTCCTGGCTGGCCTGGCTACCTTGTTCTTCAGCCCCGACTTCAATTCCCCTGCCACGTaGCGTGATCGCTTGGGAAGG +
Preference number: 5 (lower is better)
Translates to: QRPALLAGLATLFFSPDFNSPAT*RDRLGR
Trigger: CCTTCCCAAGCGATCACGCAACGTGGCAGGGGAATT...GAAGTCGGGGCTGAAGAACAAGGTAGCCAGGCCAGCCAGGAGCGCGGGTCTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS-3UTR CAA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGGGCCGTGCTCCTCCTaGCTCTCAGCCTCGGCGTCA +
Preference number: 5 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAGPCSS*LSASAS
Trigger: TGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp CCGCGGCGGAAGCCATTGATGGTAAAGCTGTGGCCAGCAAACTGCTaGTATCCGGCACTGGGACGGGGATGGAATAGGGGCTGTAACGCA +
Preference number: 5 (lower is better)
Translates to: PRRKPLMVKLWPANC*YPALGRGWNRGCNA
Trigger: TGCGTTACAGCCCCTATTCCATCCCCGTCCCAGTGCCGGATAGCAGCAGTTTGCTGGCCACAGCTTTACCATCAATGGCTTCCGCCGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp CTGTCTGGCTTGGCTTCCAAGCCACTGACCAGCCGCTGGATACTCTaGAGTTCGCTGGTAGCCGCCTCCTTCTCGGAGCAGAGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: LSGLASKPLTSRWIL*SSLVAASFSEQSLG
Trigger: ACCCAAACTCTGCTCCGAGAAGGAGGCGGCTACCAGCGAACTGCAGAGTATCCAGCGGCTGGTCAGTGGCTTGGAAGCCAAGCCAGACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGGGCCAGAACGTGTTGTaGGAGGTGGAAGGGCAGGGT +
Preference number: 5 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVGQNVL*EVEGQG
Trigger: ACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCC...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGCGCATGCTGTTCAAATaGAGGAACGGGTGGCGGTGC +
Preference number: 5 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLRMLFK*RNGWRC
Trigger: GCACCGCCACCCGTTCCTCAATTTGAACAGCATGCG...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS TCA 90 bp TCCCCACGATGGAGACAGCAGGAGAGGATGCCTGGGCAAAGCAGTTaGAGGCTGCCTGCTCGCTGGAGGACTCATCCGAAGTCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: SPRWRQQERMPGQSS*RLPARWRTHPKSPS
Trigger: AGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGCATCCTCTCCTGCTGTCTCCATCGTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp GAGACAGCAGGAGAGGATGCCTGGGCAAAGCAGTTGAAGGCTGCCTaGTCGCTGGAGGACTCATCCGAAGTCTCCTTCTTATGCCTCTCC +
Preference number: 5 (lower is better)
Translates to: ETAGEDAWAKQLKAA*SLEDSSEVSFLCLS
Trigger: GGAGAGGCATAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGCATCCTCTCCTGCTGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGACTTTGGACATCCATaGCTCCCCCGTAGCGGGGCT +
Preference number: 5 (lower is better)
Translates to: LHKSRSRHKSLFATTPPADFGHP*LPRSGA
Trigger: AGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTGCCTGGGCAAAGCAGTaGAAGGCTGCCTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFAWAKQ*KAACSL
Trigger: CAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGC...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTAAGAGCGGGTGCCCGTaGAAGAACTGCTGGCCCGCA +
Preference number: 5 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFKSGCP*KNCWPA
Trigger: TGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCTT...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGGGCCAGAACGTGTTGTaGGAGGTGGAAGGGCAGGGT +
Preference number: 5 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGGQNVL*EVEGQG
Trigger: ACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCC...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
58% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp GATGGAGACAGCAGGAGAGGATGCCTGGGCAAAGCAGTTGAAGGCTaGCTGCTCGCTGGAGGACTCATCCGAAGTCTCCTTCTTATGCCT +
Preference number: 5 (lower is better)
Translates to: DGDSRRGCLGKAVEG*LLAGGLIRSLLLMP
Trigger: AGGCATAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGCATCCTCTCCTGCTGTCTCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCGTTGCTGGGCTGCCCTaGTCGCGGCCTGGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: IQLKELMVQQAHEALYKRVAGLP*SRPGSS
Trigger: CGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAAC...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGTTCTCGGAGCAGAGTTaGGGTGACAAGGACACTGAG +
Preference number: 5 (lower is better)
Translates to: AFQSNSSLVTQPMVAGPVFSEQS*GDKDTE
Trigger: CTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGAA...CACAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGTGGTCCCAAAGTTCCTaGGCCTCCAGGTGCACCTTA +
Preference number: 5 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGWSQSS*ASRCTL
Trigger: TAAGGTGCACCTGGAGGCCAAGGAACTTTGGGACCA...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGGCCTGGGCAAAGCAGTaGAAGGCTGCCTGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: EFREFQVEPGRAITSPILAWAKQ*KAACSL
Trigger: CAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGC...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCTGGGACACAGATCTTaGAGGTTGGATGTCCCCACG +
Preference number: 5 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGLGHRS*RLDVPT
Trigger: CGTGGGGACATCCAACCTCAAAGATCTGTGTCCCAG...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGAAGAGCGGGTGCCCGTaGAAGAACTGCTGGCCCGCA +
Preference number: 5 (lower is better)
Translates to: EFREFQVEPGRAITSPILKSGCP*KNCWPA
Trigger: TGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCTT...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAACGCATGCTGTTCAAATaGAGGAACGGGTGGCGGTGC +
Preference number: 5 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPERMLFK*RNGWRC
Trigger: GCACCGCCACCCGTTCCTCAATTTGAACAGCATGCG...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGCGATTTTCAAGACCTGTCTGGCTaGGCTTCCAAGCCACTGACC +
Preference number: 5 (lower is better)
Translates to: LADLTKLEWRDLGGGGDFQDLSG*ASKPLT
Trigger: GGTCAGTGGCTTGGAAGCCAAGCCAGACAGGTCTTG...AAAATCGCCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATGGTCCCAAAGTTCCTaGGCCTCCAGGTGCACCTTA +
Preference number: 5 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEWSQSS*ASRCTL
Trigger: TAAGGTGCACCTGGAGGCCAAGGAACTTTGGGACCA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGGACTTTGGACATCCATaGCTCCCCCGTAGCGGGGCT +
Preference number: 5 (lower is better)
Translates to: EFREFQVEPGRAITSPILDFGHP*LPRSGA
Trigger: AGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTC...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp AAGGCTGCCTGCTCGCTGGAGGACTCATCCGAAGTCTCCTTCTTATaGCTCTCCTCAAACACTCTCATGGACTGCAGTGTGAGCTGCTTT +
Preference number: 5 (lower is better)
Translates to: KAACSLEDSSEVSFL*LSSNTLMDCSVSCF
Trigger: AAAGCAGCTCACACTGCAGTCCATGAGAGTGTTTGAGGAGAGGCATAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATTCTCGGAGCAGAGTTaGGGTGACAAGGACACTGAG +
Preference number: 5 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPEFSEQS*GDKDTE
Trigger: CTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGAA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGCAAGACCTGTCTGGCTaGGCTTCCAAGCCACTGACC +
Preference number: 5 (lower is better)
Translates to: EFREFQVEPGRAITSPILQDLSG*ASKPLT
Trigger: GGTCAGTGGCTTGGAAGCCAAGCCAGACAGGTCTTG...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCGACTTTGGACATCCATaGCTCCCCCGTAGCGGGGCT +
Preference number: 5 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPDFGHP*LPRSGA
Trigger: AGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTC...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGCTGGGACACAGATCTTaGAGGTTGGATGTCCCCACG +
Preference number: 5 (lower is better)
Translates to: EFREFQVEPGRAITSPILLGHRS*RLDVPT
Trigger: CGTGGGGACATCCAACCTCAAAGATCTGTGTCCCAG...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp ATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTCTACAAGCGCGTAGTGGTGGAAATCTaGGCCGCGTCGCAGGCCTCA +
Preference number: 5 (lower is better)
Translates to: IQLKELMVQQAHEALYKRVVVEI*AASQAS
Trigger: TGAGGCCTGCGACGCGGCCAAGATTTCCACCACTAC...GCGCTTGTAGAGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp AAGTGCACTGGCAGATTTGACCAAACTGGAATGGAGAGACCTTGGGGGAGGGGGGTATATACATTCTCTTaGGCATTTCGGGGTCTGCCT +
Preference number: 5 (lower is better)
Translates to: KCTGRFDQTGMERPWGRGVYTFS*AFRGLP
Trigger: AGGCAGACCCCGAAATGCCAAAGAGAATGTATATAC...CCCCCTCCCCCAAGGTCTCTCCATTCCAGTTTGGTCAAATCTGCCAGTGCACTT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTGCACAAAAGTCGCTCTAGACACAAAAGCCTGTTTGCCACCACTCCTCCCGCCGTATATACATTCTCTTaGGCATTTCGGGGTCTGCCT +
Preference number: 5 (lower is better)
Translates to: LHKSRSRHKSLFATTPPAVYTFS*AFRGLP
Trigger: AGGCAGACCCCGAAATGCCAAAGAGAATGTATATAC...GGCGGGAGGAGTGGTGGCAAACAGGCTTTTGTGTCTAGAGCGACTTTTGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GCCCCCTCAGTCCCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGTTTATCCGATATGTaGTTGGTGAGTTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: APSVPRFKATAAWLHSPWCLSDM*LVSFSL
Trigger: CAAACTGAAACTCACCAACAACATATCGGATAAACA...CCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGGGACTGAGGGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CCGCGTTTCAAAGCAACAGCAGCCTGGTTACACAGCCCATGGTGGCAGGGCCTGTGTTTATCCGATATGTaGTTGGTGAGTTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: PRFKATAAWLHSPWWQGLCLSDM*LVSFSL
Trigger: CAAACTGAAACTCACCAACAACATATCGGATAAACA...CAGGCCCTGCCACCATGGGCTGTGTAACCAGGCTGCTGTTGCTTTGAAACGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCCGCATGCTGTTCAAATaGAGGAACGGGTGGCGGTGC +
Preference number: 5 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPRMLFK*RNGWRC
Trigger: GCACCGCCACCCGTTCCTCAATTTGAACAGCATGCG...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCCTGGGACACAGATCTTaGAGGTTGGATGTCCCCACG +
Preference number: 5 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPLGHRS*RLDVPT
Trigger: CGTGGGGACATCCAACCTCAAAGATCTGTGTCCCAG...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTAAGAGCGGGTGCCCGTaGAAGAACTGCTGGCCCGCA +
Preference number: 5 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPKSGCP*KNCWPA
Trigger: TGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCTT...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 90 bp TTGGTGAGTTTCAGTTTGTGGAAAGTGACGACTTTGGACATCCATTaGTCCCCCGTAGCGGGGCTGTCCGGGTGTATATACATTCTCTTT +
Preference number: 5 (lower is better)
Translates to: LVSFSLWKVTTLDIH*SPVAGLSGCIYILF
Trigger: AAAGAGAATGTATATACACCCGGACAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAACTCACCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CTCAACCCCTCTGGGGGTGTCAAGAGTTTAGGGAATTTCAAGTGGAGCCCGGAATTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: LNPSGGVKSLGNFKWSPELSDML*VSFSLW
Trigger: CCACAAACTGAAACTCACCAACAACATATCGGATAA...TTCCGGGCTCCACTTGAAATTCCCTAAACTCTTGACACCCCCAGAGGGGTTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GAGTTTAGGGAATTTCAAGTGGAGCCCGGAAGGGCCATTACCTCCCCAATTTTGTTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: EFREFQVEPGRAITSPILLSDML*VSFSLW
Trigger: CCACAAACTGAAACTCACCAACAACATATCGGATAA...CAAAATTGGGGAGGTAATGGCCCTTCCGGGCTCCACTTGAAATTCCCTAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp GTTATTGCATATACAGTTAAAAGAACTAATGGTCCAACAGGCACACGAAGCCCTTTCTCGGAGCAGAGTTaGGGTGACAAGGACACTGAG +
Preference number: 5 (lower is better)
Translates to: VIAYTVKRTNGPTGTRSPFSEQS*GDKDTE
Trigger: CTCAGTGTCCTTGTCACCCAAACTCTGCTCCGAGAA...AGGGCTTCGTGTGCCTGTTGGACCATTAGTTCTTTTAACTGTATATGCAATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCTTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPLSDML*VSFSLW
Trigger: CCACAAACTGAAACTCACCAACAACATATCGGATAA...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS-3UTR CAA 90 bp CAGCAATTGGTGAGTTTCAGTCTTCATAGACAGTTCCACAGGACTTCATCTCCCTGTTTATCCGATATGTaGTTGGTGAGTTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: QQLVSFSLHRQFHRTSSPCLSDM*LVSFSL
Trigger: CAAACTGAAACTCACCAACAACATATCGGATAAACA...GGGAGATGAAGTCCTGTGGAACTGTCTATGAAGACTGAAACTCACCAATTGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp CCGGCTGGGCTCCGCGGGGAACAGCTGCGCCCTGGTTaGTGGGCTGCCCTTGTCGCGGCCTGGCTCCTCGGC +
Preference number: 6 (lower is better)
Translates to: PAGLRGEQLRPG*WAALVAAWLLG
Trigger: GCCGAGGAGCCAGGCCGCGACAAGGGCAGCCCAGCAACCAGGGCGCAGCTGTTCCCCGCGGAGCCCAGCCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp CTGGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTGGCGATGCCTaGTCCAGACGCGCGGTGTCGCGGGCCCGGCTGGGCTCCGCGGGG +
Preference number: 6 (lower is better)
Translates to: LDEMVAGLWRESGDA*SRRAVSRARLGSAG
Trigger: CCCCGCGGAGCCCAGCCGGGCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp ATGCCTTGTCCAGACGCGCGGTGTCGCGGGCCCGGCTaGGCTCCGCGGGGAACAGCTGCGCCCTGGTTGCTG +
Preference number: 6 (lower is better)
Translates to: MPCPDARCRGPG*APRGTAAPWLL
Trigger: CAGCAACCAGGGCGCAGCTGTTCCCCGCGGAGCCCAGCCGGGCCCGCGACACCGCGCGTCTGGACAAGGCAT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp CGAGATGGTGGCCGGGCTATGGCGCGAGTCTGGCGATaGCTTGTCCAGACGCGCGGTGTCGCGGGCCCGGCT +
Preference number: 6 (lower is better)
Translates to: RDGGRAMARVWR*LVQTRGVAGPA
Trigger: AGCCGGGCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp CCTTGGTGGCGACTGGACCCTCGCGCCCGGGACTCCTaGGCTCATCAGCTCCCGGAACTCGCGTGCTGGACG +
Preference number: 6 (lower is better)
Translates to: PWWRLDPRARDS*AHQLPELACWT
Trigger: CGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTCCCGGGCGCGAGGGTCCAGTCGCCACCAAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GGAGGCAGCGTTAGCGCGGGGAAGAAAGGCGGCTGGTaGCCCAGTACCGCGCTCATGGCGAAGTCCGGCGCC +
Preference number: 6 (lower is better)
Translates to: GGSVSAGKKGGW*PSTALMAKSGA
Trigger: GGCGCCGGACTTCGCCATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTTCCCCGCGCTAACGCTGCCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GCTGGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTaGCGATGCCTTGTCCAGACGCGCGGTGTCGCGGGC +
Preference number: 6 (lower is better)
Translates to: AGRDGGRAMARV*RCLVQTRGVAG
Trigger: GCCCGCGACACCGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 72 bp TCGCGGCCTGGCTCCTCGGCCGTAGTGGTGGAAATCTaGGCCGCGTCGCAGGCCTCAGGGCCGTGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SRPGSSAVVVEI*AASQASGPCSS
Trigger: GGAGGAGCACGGCCCTGAGGCCTGCGACGCGGCCAAGATTTCCACCACTACGGCCGAGGAGCCAGGCCGCGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp GAGTCCACAGCCACCGAGGCTGGGCTGGCTGCCAGGGCGGCCGCTTaGCCGTCTAGGGGCCCCGCGGCGGAAGCCATTGATGGTAAAGCT +
Preference number: 6 (lower is better)
Translates to: ESTATEAGLAARAAA*PSRGPAAEAIDGKA
Trigger: AGCTTTACCATCAATGGCTTCCGCCGCGGGGCCCCTAGACGGCAAAGCGGCCGCCCTGGCAGCCAGCCCAGCCTCGGTGGCTGTGGACTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp CCCGGGTGCAGGAAGAGCGGGTGCCCGTTGAAGAACTaGTGGCCCGCAAGGCCTGGGGCGAAACCCAAGCCC +
Preference number: 6 (lower is better)
Translates to: PGCRKSGCPLKN*WPARPGAKPKP
Trigger: GGGCTTGGGTTTCGCCCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCTTCCTGCACCCGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GGGTGCAGGAAGAGCGGGTGCCCGTTGAAGAACTGCTaGCCCGCAAGGCCTGGGGCGAAACCCAAGCCCGGG +
Preference number: 6 (lower is better)
Translates to: GCRKSGCPLKNC*PARPGAKPKPG
Trigger: CCCGGGCTTGGGTTTCGCCCCAGGCCTTGCGGGCCAGCAGTTCTTCAACGGGCACCCGCTCTTCCTGCACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp TTGGGAGGCAGCGTTAGCGCGGGGAAGAAAGGCGGCTaGTGGCCCAGTACCGCGCTCATGGCGAAGTCCGGC +
Preference number: 6 (lower is better)
Translates to: LGGSVSAGKKGG*WPSTALMAKSG
Trigger: GCCGGACTTCGCCATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTTCCCCGCGCTAACGCTGCCTCCCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GGAACTCGCGTGCTGGACGAGATGGTGGCCGGGCTATaGCGCGAGTCTGGCGATGCCTTGTCCAGACGCGCG +
Preference number: 6 (lower is better)
Translates to: GTRVLDEMVAGL*RESGDALSRRA
Trigger: CGCGCGTCTGGACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp CCCCAGACAGTCCCTGCGCTGCGGCAGCCGAGGCCATaGCTGTGGATTCTAGGCCTGAGACGCCGGTGGATG +
Preference number: 6 (lower is better)
Translates to: PQTVPALRQPRP*LWILGLRRRWM
Trigger: CATCCACCGGCGTCTCAGGCCTAGAATCCACAGCCATGGCCTCGGCTGCCGCAGCGCAGGGACTGTCTGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp AGCCTGGGGCGCATGCTGTTCAAATTGAGGAACGGGTaGCGGTGCACGGAGCTGGAGGCGGCCGCGGTGGAG +
Preference number: 6 (lower is better)
Translates to: SLGRMLFKLRNG*RCTELEAAAVE
Trigger: CTCCACCGCGGCCGCCTCCAGCTCCGTGCACCGCCACCCGTTCCTCAATTTGAACAGCATGCGCCCCAGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp TGCGCGGTGGCGTCTGTCTGCACCGACAGTGGAGCGAAGGCGTCCTaGGCAGGAATCGCGCGCGCCTCATCCACCTTGGTGGCGACTGGA +
Preference number: 6 (lower is better)
Translates to: CAVASVCTDSGAKAS*AGIARASSTLVATG
Trigger: TCCAGTCGCCACCAAGGTGGATGAGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTCCACTGTCGGTGCAGACAGACGCCACCGCGCA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp TGCTCCGGATACTGTGGCCAGCAGGGGCCCCATGCCTaGAGCCATGCTAGAGAAGGCGCCGCCCATGGCGAA +
Preference number: 6 (lower is better)
Translates to: CSGYCGQQGPHA*SHAREGAAHGE
Trigger: TTCGCCATGGGCGGCGCCTTCTCTAGCATGGCTGCAGGCATGGGGCCCCTGCTGGCCACAGTATCCGGAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GGAAGAAAGGCGGCTGGTGGCCCAGTACCGCGCTCATaGCGAAGTCCGGCGCCCGGTGAGGTAGGAAGGGAT +
Preference number: 6 (lower is better)
Translates to: GRKAAGGPVPRS*RSPAPGEVGRD
Trigger: ATCCCTTCCTACCTCACCGGGCGCCGGACTTCGCCATGAGCGCGGTACTGGGCCACCAGCCGCCTTTCTTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GACTCCTGCGCTCATCAGCTCCCGGAACTCGCGTGCTaGACGAGATGGTGGCCGGGCTATGGCGCGAGTCTG +
Preference number: 6 (lower is better)
Translates to: DSCAHQLPELAC*TRWWPGYGASL
Trigger: CAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATGAGCGCAGGAGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp GTGGAAATCTTGGCCGCGTCGCAGGCCTCAGGGCCGTGCTCCTCCTaGCTCTCAGCCTCGGCGTCACTCTCGGCTTCGCTGGGACACAGA +
Preference number: 6 (lower is better)
Translates to: VEILAASQASGPCSS*LSASASLSASLGHR
Trigger: TCTGTGTCCCAGCGAAGCCGAGAGTGACGCCGAGGCTGAGAGCAAGGAGGAGCACGGCCCTGAGGCCTGCGACGCGGCCAAGATTTCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp CCCGAAAGGCGACATAGCCAAGCCCTGGGAGGCCAGAACGTGTTGTaGGAGGTGGAAGGGCAGGGTGGCAGCCGACGCCCCAGACAGTCC +
Preference number: 6 (lower is better)
Translates to: PERRHSQALGGQNVL*EVEGQGGSRRPRQS
Trigger: GGACTGTCTGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCCTCCCAGGGCTTGGCTATGTCGCCTTTCGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS TCA 72 bp GGATGCCGGTCTCAGCAGCCCCCACTAACTGATCCATaGTGGGCTTGGCCAGAGCTCCGGGGAGCGAGAGCG +
Preference number: 6 (lower is better)
Translates to: GCRSQQPPLTDP*WAWPELRGARA
Trigger: CGCTCTCGCTCCCCGGAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGGGGGCTGCTGAGACCGGCATCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp CATCAGCTCCCGGAACTCGCGTGCTGGACGAGATGGTaGCCGGGCTATGGCGCGAGTCTGGCGATGCCTTGT +
Preference number: 6 (lower is better)
Translates to: HQLPELACWTRW*PGYGASLAMPC
Trigger: ACAAGGCATCGCCAGACTCGCGCCATAGCCCGGCCACCATCTCGTCCAGCACGCGAGTTCCGGGAGCTGATG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp CGTCTGTCTGCACCGACAGTGGAGCGAAGGCGTCCTTaGCAGGAATCGCGCGCGCCTCATCCACCTTGGTGG +
Preference number: 6 (lower is better)
Translates to: RLSAPTVERRRP*QESRAPHPPWW
Trigger: CCACCAAGGTGGATGAGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTCCACTGTCGGTGCAGACAGACG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp AGGCCATGGCTGTGGATTCTAGGCCTGAGACGCCGGTaGATGCTCCGGATACTGTGGCCAGCAGGGGCCCCA +
Preference number: 6 (lower is better)
Translates to: RPWLWILGLRRR*MLRILWPAGAP
Trigger: TGGGGCCCCTGCTGGCCACAGTATCCGGAGCATCCACCGGCGTCTCAGGCCTAGAATCCACAGCCATGGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GACATAGCCAAGCCCTGGGAGGCCAGAACGTGTTGTTaGAGGTGGAAGGGCAGGGTGGCAGCCGACGCCCCA +
Preference number: 6 (lower is better)
Translates to: DIAKPWEARTCC*RWKGRVAADAP
Trigger: TGGGGCGTCGGCTGCCACCCTGCCCTTCCACCTCCAACAACACGTTCTGGCCTCCCAGGGCTTGGCTATGTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GGGGCCCCGCGGCGGAAGCCATTGATGGTAAAGCTGTaGCCAGCAAACTGCTGCTATCCGGCACTGGGACGG +
Preference number: 6 (lower is better)
Translates to: GAPRRKPLMVKL*PANCCYPALGR
Trigger: CCGTCCCAGTGCCGGATAGCAGCAGTTTGCTGGCCACAGCTTTACCATCAATGGCTTCCGCCGCGGGGCCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 72 bp GCGTCTGTCTGCACCGACAGTGGAGCGAAGGCGTCCTaGGCAGGAATCGCGCGCGCCTCATCCACCTTGGTG +
Preference number: 6 (lower is better)
Translates to: ASVCTDSGAKAS*AGIARASSTLV
Trigger: CACCAAGGTGGATGAGGCGCGCGCGATTCCTGCCAAGGACGCCTTCGCTCCACTGTCGGTGCAGACAGACGC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS TCA 72 bp GAGAAAGGGATGCCGGTCTCAGCAGCCCCCACTAACTaGTCCATGATGGGCTTGGCCAGAGCTCCGGGGAGC +
Preference number: 6 (lower is better)
Translates to: EKGMPVSAAPTN*SMMGLARAPGS
Trigger: GCTCCCCGGAGCTCTGGCCAAGCCCATCATGGATCAGTTAGTGGGGGCTGCTGAGACCGGCATCCCTTTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp TTGGCTTCCAAGCCACTGACCAGCCGCTGGATACTCTaGAGTTCGCTGGTAGCCGCCTCCTTCTCGGAGCAG +
Preference number: 6 (lower is better)
Translates to: LASKPLTSRWIL*SSLVAASFSEQ
Trigger: CTGCTCCGAGAAGGAGGCGGCTACCAGCGAACTGCAGAGTATCCAGCGGCTGGTCAGTGGCTTGGAAGCCAA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GGAAACAGGCTCCCGAAAGGCGACATAGCCAAGCCCTaGGAGGCCAGAACGTGTTGTTGGAGGTGGAAGGGC +
Preference number: 6 (lower is better)
Translates to: GNRLPKGDIAKP*EARTCCWRWKG
Trigger: GCCCTTCCACCTCCAACAACACGTTCTGGCCTCCCAGGGCTTGGCTATGTCGCCTTTCGGGAGCCTGTTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CCA 72 bp GTTTGGGTGACAAGGACACTGAGCCAGAGGACAGCGTaGACGAGCGGCTGTTCAGTTCCGACCCCGAGTCCA +
Preference number: 6 (lower is better)
Translates to: VWVTRTLSQRTA*TSGCSVPTPSP
Trigger: TGGACTCGGGGTCGGAACTGAACAGCCGCTCGTCCACGCTGTCCTCTGGCTCAGTGTCCTTGTCACCCAAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 72 bp CCGCTTTGCCGTCTAGGGGCCCCGCGGCGGAAGCCATaGATGGTAAAGCTGTGGCCAGCAAACTGCTGCTAT +
Preference number: 6 (lower is better)
Translates to: PLCRLGAPRRKP*MVKLWPANCCY
Trigger: ATAGCAGCAGTTTGCTGGCCACAGCTTTACCATCAATGGCTTCCGCCGCGGGGCCCCTAGACGGCAAAGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS TCA 72 bp CGGCGTCACTCTCGGCTTCGCTGGGACACAGATCTTTaGGGTTGGATGTCCCCACGATGGAGACAGCAGGAG +
Preference number: 6 (lower is better)
Translates to: RRHSRLRWDTDL*GWMSPRWRQQE
Trigger: CTCCTGCTGTCTCCATCGTGGGGACATCCAACCTCAAAGATCTGTGTCCCAGCGAAGCCGAGAGTGACGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp GGAGAGGATGCCTGGGCAAAGCAGTTGAAGGCTGCCTaGTCGCTGGAGGACTCATCCGAAGTCTCCTTCTTA +
Preference number: 6 (lower is better)
Translates to: GEDAWAKQLKAA*SLEDSSEVSFL
Trigger: TAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCAGGCAGCCTTCAACTGCTTTGCCCAGGCATCCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp TTCAGTTTGTGGAAAGTGACGACTTTGGACATCCATTaGTCCCCCGTAGCGGGGCTGTCCGGGTGTATATAC +
Preference number: 6 (lower is better)
Translates to: FSLWKVTTLDIH*SPVAGLSGCIY
Trigger: GTATATACACCCGGACAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp TGCTCGCTGGAGGACTCATCCGAAGTCTCCTTCTTATaGCTCTCCTCAAACACTCTCATGGACTGCAGTGTG +
Preference number: 6 (lower is better)
Translates to: CSLEDSSEVSFL*LSSNTLMDCSV
Trigger: CACACTGCAGTCCATGAGAGTGTTTGAGGAGAGGCATAAGAAGGAGACTTCGGATGAGTCCTCCAGCGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS GCA 72 bp AGTCTGGGTCCCAAAACTATAATTCCCCTGCCACGTTaGGTGATCGCTTGGGAAGGCCAAAGTAAATCCGTG +
Preference number: 6 (lower is better)
Translates to: SLGPKTIIPLPR*VIAWEGQSKSV
Trigger: CACGGATTTACTTTGGCCTTCCCAAGCGATCACGCAACGTGGCAGGGGAATTATAGTTTTGGGACCCAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS CAA 72 bp TTTCAGTTTGTGGAAAGTGACGACTTTGGACATCCATaGCTCCCCCGTAGCGGGGCTGTCCGGGTGTATATA +
Preference number: 6 (lower is better)
Translates to: FQFVESDDFGHP*LPRSGAVRVYI
Trigger: TATATACACCCGGACAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp GTTGGTGAGTTTCAGTTTGTGGAAAGTGACGACTTTGGACATCCATaGCTCCCCCGTAGCGGGGCTGTCCGGGTGTATATACATTCTCTT +
Preference number: 6 (lower is better)
Translates to: VGEFQFVESDDFGHP*LPRSGAVRVYIHSL
Trigger: AAGAGAATGTATATACACCCGGACAGCCCCGCTACGGGGGAGCAATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAACTCACCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000018748.9
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 90 bp TCGCTTGGGAAGGCCAAAGTAAATCCGTGTTTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGGAAAGTGACGACTTTGGACATCCAT +
Preference number: 6 (lower is better)
Translates to: SLGKAKVNPCLSDML*VSFSLWKVTTLDIH
Trigger: ATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAACTCACCAACAACATATCGGATAAACACGGATTTACTTTGGCCTTCCCAAGCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS CAA 72 bp GGGAAGGCCAAAGTAAATCCGTGTTTATCCGATATGTaGTTGGTGAGTTTCAGTTTGTGGAAAGTGACGACT +
Preference number: 6 (lower is better)
Translates to: GKAKVNPCLSDM*LVSFSLWKVTT
Trigger: AGTCGTCACTTTCCACAAACTGAAACTCACCAACAACATATCGGATAAACACGGATTTACTTTGGCCTTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS CAA 72 bp AAGGCCAAAGTAAATCCGTGTTTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGGAAAGTGACGACTTTG +
Preference number: 6 (lower is better)
Translates to: KAKVNPCLSDML*VSFSLWKVTTL
Trigger: CAAAGTCGTCACTTTCCACAAACTGAAACTCACCAACAACATATCGGATAAACACGGATTTACTTTGGCCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018748.9
CDS CAA 90 bp TGCATAGAGTTTAGTATAGTAAATCCGTGTTTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGGAAAGTGACGACTTTGGACATCCAT +
Preference number: 6 (lower is better)
Translates to: CIEFSIVNPCLSDML*VSFSLWKVTTLDIH
Trigger: ATGGATGTCCAAAGTCGTCACTTTCCACAAACTGAAACTCACCAACAACATATCGGATAAACACGGATTTACTATACTAAACTCTATGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 72 bp GAGTTTAGTATAGTAAATCCGTGTTTATCCGATATGTaGTTGGTGAGTTTCAGTTTGTGGAAAGTGACGACT +
Preference number: 6 (lower is better)
Translates to: EFSIVNPCLSDM*LVSFSLWKVTT
Trigger: AGTCGTCACTTTCCACAAACTGAAACTCACCAACAACATATCGGATAAACACGGATTTACTATACTAAACTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079719.11
ENSMUST00000121021.8
CDS CAA 72 bp TTTAGTATAGTAAATCCGTGTTTATCCGATATGTTGTaGGTGAGTTTCAGTTTGTGGAAAGTGACGACTTTG +
Preference number: 6 (lower is better)
Translates to: FSIVNPCLSDML*VSFSLWKVTTL
Trigger: CAAAGTCGTCACTTTCCACAAACTGAAACTCACCAACAACATATCGGATAAACACGGATTTACTATACTAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079719.11
ENSMUST00000121021.8