Pregenerated sensors for TBX10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037477Ensembl transcript IDs: ENSMUST00000041871.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTTaGGTAGGAAGTAGGCCTGATTCCAAGGCTGGCAGGCCCCAGACT | + |
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Preference number: 1 (lower is better) Translates to: LEEASSRQQGMIQGF*VGSRPDSKAGRPQT Trigger: AGTCTGGGGCCTGCCAGCCTTGGAATCAGGCCTACTTCCTACTCAAAAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| 3UTR-3UTR CAA 90 bp | AATGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGGGCCCCAGACTGACTTaGAGGCAGGAACCCACTGCT | + |
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Preference number: 3 (lower is better) Translates to: NVGEGHSKQDLEEASSRQGPRLT*RQEPTA Trigger: AGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCC...CTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| 3UTR TCA 72 bp | GCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTTaGGTAGGAAGTAGGCCTGATTCCAAGGCTGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: ASSRQQGMIQGF*VGSRPDSKAGR Trigger: CCTGCCAGCCTTGGAATCAGGCCTACTTCCTACTCAAAAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | CTGATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTTGGGGCCCTGCCCAGTaGGCTCTGCCATGGCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: LIPRLAGPRLTLRQEPTAWGPAQ*ALPWLG Trigger: CCCAAGCCATGGCAGAGCCCACTGGGCAGGGCCCCA...AGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTGTGCTGGCGAGTCAGGGTaGAAGTGCACCCTGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: DSKAGRPQTDFEAGTHCCAGESG*KCTLPG Trigger: GCCTGGCAGGGTGCACTTCCACCCTGACTCGCCAGC...ACAGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTGTCTGGGCACCCTTGGCTaGCGAGTCAGGGTGGAAGTG | + |
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Preference number: 4 (lower is better) Translates to: DSKAGRPQTDFEAGTHCCLGTLG*RVRVEV Trigger: CACTTCCACCCTGACTCGCCAGCCAAGGGTGCCCAG...ACAGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | CTGATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTTCCACTGGGCACCCTTaGCTGGCGAGTCAGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LIPRLAGPRLTLRQEPTASTGHP*LASQGG Trigger: TCCACCCTGACTCGCCAGCCAAGGGTGCCCAGTGGA...AGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTGTAGCACAAGGCAGAGGTaGGCAGGAGTCCCAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: DSKAGRPQTDFEAGTHCCSTRQR*AGVPAQ Trigger: CTGGGCTGGGACTCCTGCCCACCTCTGCCTTGTGCT...ACAGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGACTCCCAGCTGGTGCTaGTCTCGGGATGGGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: VGEGHSKQDLEEASSRQQTPSWC*SRDGDR Trigger: CCTGTCCCCATCCCGAGACCAGCACCAGCTGGGAGT...CTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GTTGTGCTGCTCGCCTTAGGAGATGTCTTACAGAGGAGGGAAGGAGAGGTGGGGCACACTGGACACACGTaGGTTCTTGGGGCCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: VVLLALGDVLQRREGEVGHTGHT*VLGALP Trigger: GGGCAGGGCCCCAAGAACCCACGTGTGTCCAGTGTG...CCCCACCTCTCCTTCCCTCCTCTGTAAGACATCTCCTAAGGCGAGCAGCACAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR TCA 90 bp | TGTGCTGCTCGCCTTAGGAGATGTCTTACAGAGGAGGGAAGGAGAGGTGGGGCACATGGTGCAGGAACCTaGGGGGAATCGTGTCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: CAARLRRCLTEEGRRGGAHGAGT*GESCPQ Trigger: CTGGGGACACGATTCCCCTCAGGTTCCTGCACCATG...TGCCCCACCTCTCCTTCCCTCCTCTGTAAGACATCTCCTAAGGCGAGCAGCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR TCA 90 bp | TTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGGGGGGTCACAGGCCATaGGTCTGGGTCAGCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: FEAGFRGGILEAAGHDSGGGHRP*VWVSLS Trigger: AGAGAGGCTGACCCAGACTCATGGCCTGTGACCCCC...CCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAA 59% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR GCA 90 bp | TTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTTGAGTAGGGGGACTCCCAGCTGGTaGTGGTCTCGGGATGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: FRGGILEAAGHDSGLLSRGTPSW*WSRDGD Trigger: GTCCCCATCCCGAGACCAGCACCAGCTGGGAGTCCC...CCTACTCAAAAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGTGCTGGTCTCGGGATaGGGACAGGTCTCTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: VGEGHSKQDLEEASSRQQVLVSG*GQVSGG Trigger: TCCTCCAGAGACCTGTCCCCATCCCGAGACCAGCAC...CTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | TGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAACACACGTGGGTTCTTaGGGCCCTGCCCAGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CGGRTFEAGFRGGILEAATHVGS*GPAQWA Trigger: AGCCCACTGGGCAGGGCCCCAAGAACCCACGTGTGT...TGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | TGTGCTGCTCGCCTTAGGAGATGTCTTACAGAGGAGGGAAGGAGAGGTGGGGCAGGCACTGTCCTTGCGTaGGTCCACGAAGACCACGTG | + |
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Preference number: 4 (lower is better) Translates to: CAARLRRCLTEEGRRGGAGTVLA*VHEDHV Trigger: CACGTGGTCTTCGTGGACCCACGCAAGGACAGTGCC...TGCCCCACCTCTCCTTCCCTCCTCTGTAAGACATCTCCTAAGGCGAGCAGCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR GCA 90 bp | GAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTCTGCCCAGTGGGCTCTaGCATGGCTTGGGCTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: EAGFRGGILEAAGHDSGLLPSGL*HGLGFC Trigger: ACAGAAGCCCAAGCCATGGCAGAGCCCACTGGGCAG...AAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR GCA 90 bp | TTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGAGCGGGCACTGTCCTTaGGTGGGTCCACGAAGACCA | + |
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Preference number: 4 (lower is better) Translates to: FEAGFRGGILEAAGHDSGSGHCP*VGPRRP Trigger: TGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCT...CCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | TTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTTGAGTAGGCCCAGCTGCGAGGGTTaGGTCCTCCTGATCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FRGGILEAAGHDSGLLSRPSCEG*VLLISS Trigger: GCTGGAGATCAGGAGGACCCAACCCTCGCAGCTGGG...CCTACTCAAAAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| 3UTR CAA 72 bp | GGCCTGATTCCAAGGCTGGCAGGCCCCAGACTGACTTaGAGGCAGGAACCCACTGCTGTAGAGCTTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: GLIPRLAGPRLT*RQEPTAVELPV Trigger: AACTGGAAGCTCTACAGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR TCA 90 bp | GTTGTGCTGCTCGCCTTAGGAGATGTCTTACAGAGGAGGGAAGGAGAGGTGGGGTCCTGCCCGCTTTGGTaGCAATCATCTCTGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: VVLLALGDVLQRREGEVGSCPLW*QSSLCP Trigger: TGGGCACAGAGATGATTGTCACCAAAGCGGGCAGGA...CCCCACCTCTCCTTCCCTCCTCTGTAAGACATCTCCTAAGGCGAGCAGCACAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR GCA 90 bp | TTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCAGCCAGCGTGTCCATaGCCAGGATCTTCACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: FEAGFRGGILEAAGHDSGQPACP*PGSSPG Trigger: TCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTG...CCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTGTGAACTCTTCCCACAGTaGCTTCATCTCCAGCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: DSKAGRPQTDFEAGTHCCELFPQ*LHLQLH Trigger: GTGCAGCTGGAGATGAAGCCACTGTGGGAAGAGTTC...ACAGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | CTGATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTCCCAGGATCTTCACCTaGAACGTTGGGAACATCCTC | + |
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Preference number: 4 (lower is better) Translates to: LIPRLAGPRLTLRQEPTAPRIFT*NVGNIL Trigger: GAGGATGTTCCCAACGTTCCAGGTGAAGATCCTGGG...AGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | AAGCAGTTTAATGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCGCACCCTGCCAGGCGTaGCAGGGTCTGCCTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: KQFNVGEGHSKQDLEEASAPCQA*QGLPCL Trigger: CAGGCAAGGCAGACCCTGCCACGCCTGGCAGGGTGC...GGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACATTAAACTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR TCA 90 bp | GTAGGCCTGATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCCAATTTTCAGCTGCGTaGTCCTGTGGTTCTGATAGG | + |
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Preference number: 4 (lower is better) Translates to: VGLIPRLAGPRLTLRQEPQFSAA*SCGSDR Trigger: CCTATCAGAACCACAGGATCACGCAGCTGAAAATTG...GGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATCAGGCCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR GCA 90 bp | GAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTCAAAGGACACAATCTaGCGCATCCACTGGGCACCC | + |
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Preference number: 4 (lower is better) Translates to: EAGFRGGILEAAGHDSGLSKDTI*RIHWAP Trigger: GGGTGCCCAGTGGATGCGGCAGATTGTGTCCTTTGA...AAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR TCA 90 bp | TTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTTGAGTAGGCTGGGTCAGCCTCTCTaGAACCTTTGGCAAAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: FRGGILEAAGHDSGLLSRLGQPL*NLWQRG Trigger: ACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAG...CCTACTCAAAAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | GATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTGTAAGCGGAAGCTTTACTaGTATCTTTCTCTCGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: DSKAGRPQTDFEAGTHCCKRKLY*YLSLVL Trigger: CAGAACGAGAGAAAGATACCAGTAAAGCTTCCGCTT...ACAGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CCA 90 bp | AATGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGGTCACAGCTGTAAACTaGGTCTCCGTGAAGACAAAG | + |
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Preference number: 4 (lower is better) Translates to: NVGEGHSKQDLEEASSRQVTAVN*VSVKTK Trigger: CTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGAC...CTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR GCA 90 bp | AAGCAGTTTAATGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCGGCTTCATCTCCAGCTaGACCATCACACTGGACACA | + |
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Preference number: 4 (lower is better) Translates to: KQFNVGEGHSKQDLEEASGFISS*TITLDT Trigger: TGTGTCCAGTGTGATGGTGCAGCTGGAGATGAAGCC...GGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACATTAAACTGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS TCA 90 bp | CCAGCCCAGCTGCGAGGGTTGGGTCCTCCTGATCTCCAGCCGTGCTaGTGTTGGGGAGAGGGTAAGGTGCCAGCCGAGCTCTTGGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: PAQLRGLGPPDLQPC*CWGEGKVPAELLGA Trigger: GGCCCCCAAGAGCTCGGCTGGCACCTTACCCTCTCCCCAACATCAGCACGGCTGGAGATCAGGAGGACCCAACCCTCGCAGCTGGGCTGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CCA 90 bp | GCACAAGGCAGAGGTGGGCAGGAGTCCCAGCCCAGCTGCGAGGGTTaGGTCCTCCTGATCTCCAGCCGTGCTGATGTTGGGGAGAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: AQGRGGQESQPSCEG*VLLISSRADVGERV Trigger: TACCCTCTCCCCAACATCAGCACGGCTGGAGATCAGGAGGACCCAACCCTCGCAGCTGGGCTGGGACTCCTGCCCACCTCTGCCTTGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS TCA 90 bp | GGGCTCTGCCATGGCTTGGGCTTCTGTAGACATGGTGCAGGAACCTaGGGGGAATCGTGTCCCCAGCCGGGACTCCCAGCTGGTGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: GLCHGLGFCRHGAGT*GESCPQPGLPAGAG Trigger: ACCAGCACCAGCTGGGAGTCCCGGCTGGGGACACGATTCCCCTCAGGTTCCTGCACCATGTCTACAGAAGCCCAAGCCATGGCAGAGCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | CTGATTCCAAGGCTGGCAGGCCCCAGACTGACTTTGAGGCAGGAACCCACTGCTGACACACGTGGGTTCTaGGGGCCCTGCCCAGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: LIPRLAGPRLTLRQEPTADTRGF*GPCPVG Trigger: GCCCACTGGGCAGGGCCCCAAGAACCCACGTGTGTC...AGCAGTGGGTTCCTGCCTCAAAGTCAGTCTGGGGCCTGCCAGCCTTGGAATCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | GTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGGGCCCAGCACGGCTaGGGGATCCAGGGTACAGGT | + |
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Preference number: 5 (lower is better) Translates to: VGEGHSKQDLEEASSRQQGAQHG*GIQGTG Trigger: ACCTGTACCCTGGATCCCCAAGCCGTGCTGGGCCCC...CTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CCA 90 bp | ACACGTGGGTTCTTGGGGCCCTGCCCAGTGGGCTCTGCCATGGCTTaGGCTTCTGTAGACATGGTGCAGGAACCTGAGGGGAATCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: TRGFLGPCPVGSAMA*ASVDMVQEPEGNRV Trigger: GACACGATTCCCCTCAGGTTCCTGCACCATGTCTACAGAAGCCCAAGCCATGGCAGAGCCCACTGGGCAGGGCCCCAAGAACCCACGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | AATGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGGTGCCAGCCGAGCTCTaGGGGGCCCAGCACGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: NVGEGHSKQDLEEASSRQVPAEL*GAQHGL Trigger: CAAGCCGTGCTGGGCCCCCAAGAGCTCGGCTGGCAC...CTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACATT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | GTTGTGCTGCTCGCCTTAGGAGATGTCTTACAGAGGAGGGAAGGAGAGGTGGGGGGGCTCTGCCATGGCTaGGGCTTCTGTAGACATGGT | + |
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Preference number: 5 (lower is better) Translates to: VVLLALGDVLQRREGEVGGLCHG*GFCRHG Trigger: ACCATGTCTACAGAAGCCCAAGCCATGGCAGAGCCC...CCCCACCTCTCCTTCCCTCCTCTGTAAGACATCTCCTAAGGCGAGCAGCACAAC 58% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS GCA 90 bp | CCTGGAGCTGGAAGCGGAAGCTTTACTGGTATCTTTCTCTCGTTCTaGAGAGCCCTTAAGGAGGCAGGGACTGAGGCTGCTACGACTCCG | + |
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Preference number: 5 (lower is better) Translates to: PGAGSGSFTGIFLSF*RALKEAGTEAATTP Trigger: CGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGGGCTCTGCAGAACGAGAGAAAGATACCAGTAAAGCTTCCGCTTCCAGCTCCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | AAGCAGTTTAATGTGGGGGAAGGACATTCGAAGCAGGATTTAGAGGAGGCATCCATCCACTGGGCACCCTaGGCTGGCGAGTCAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: KQFNVGEGHSKQDLEEASIHWAP*AGESGW Trigger: CCACCCTGACTCGCCAGCCAAGGGTGCCCAGTGGAT...GGATGCCTCCTCTAAATCCTGCTTCGAATGTCCTTCCCCCACATTAAACTGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | TTCGAAGCAGGATTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGATCCTCCTGCCCGCTTaGGTGACAATCATCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: FEAGFRGGILEAAGHDSGILLPA*VTIISV Trigger: CACAGAGATGATTGTCACCAAAGCGGGCAGGAGGAT...CCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAATCCTGCTTCGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS-3UTR CAA 90 bp | TTTAGAGGAGGCATCCTCGAGGCAGCAGGGCATGATTCAGGGCTTTTGAGTAGGGCGTACCTGTATCTCTaGTCATCCAACGGGATAAAG | + |
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Preference number: 5 (lower is better) Translates to: FRGGILEAAGHDSGLLSRAYLYL*SSNGIK Trigger: CTTTATCCCGTTGGATGACAAGAGATACAGGTACGC...CCTACTCAAAAGCCCTGAATCATGCCCTGCTGCCTCGAGGATGCCTCCTCTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS GCA 72 bp | GCACAAGGCAGAGGTGGGCAGGAGTCCCAGCCCAGCTaGGAGGGTTGGGTCCTCCTGATCTCCAGCCGTGCT | + |
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Preference number: 6 (lower is better) Translates to: AQGRGGQESQPS*EGWVLLISSRA Trigger: AGCACGGCTGGAGATCAGGAGGACCCAACCCTCGCAGCTGGGCTGGGACTCCTGCCCACCTCTGCCTTGTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CCA 72 bp | CCCAGCCGGGACTCCCAGCTGGTGCTGGTCTCGGGATaGGGACAGGTCTCTGGAGGAGCAAGTACCCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: PSRDSQLVLVSG*GQVSGGASTPR Trigger: CCTTGGGGTACTTGCTCCTCCAGAGACCTGTCCCCATCCCGAGACCAGCACCAGCTGGGAGTCCCGGCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CCA 72 bp | GGAATCGTGTCCCCAGCCGGGACTCCCAGCTGGTGCTaGTCTCGGGATGGGGACAGGTCTCTGGAGGAGCAA | + |
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Preference number: 6 (lower is better) Translates to: GIVSPAGTPSWC*SRDGDRSLEEQ Trigger: TTGCTCCTCCAGAGACCTGTCCCCATCCCGAGACCAGCACCAGCTGGGAGTCCCGGCTGGGGACACGATTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CAA 72 bp | AAGGTGCCAGCCGAGCTCTTGGGGGCCCAGCACGGCTaGGGGATCCAGGGTACAGGTTCTGGTAAGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: KVPAELLGAQHG*GIQGTGSGKGG Trigger: CCCTCCCTTACCAGAACCTGTACCCTGGATCCCCAAGCCGTGCTGGGCCCCCAAGAGCTCGGCTGGCACCTT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS TCA 72 bp | CTGCGAGGGTTGGGTCCTCCTGATCTCCAGCCGTGCTaGTGTTGGGGAGAGGGTAAGGTGCCAGCCGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LRGLGPPDLQPC*CWGEGKVPAEL Trigger: GAGCTCGGCTGGCACCTTACCCTCTCCCCAACATCAGCACGGCTGGAGATCAGGAGGACCCAACCCTCGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS GCA 72 bp | CACACGTGGGTTCTTGGGGCCCTGCCCAGTGGGCTCTaGCATGGCTTGGGCTTCTGTAGACATGGTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: HTWVLGALPSGL*HGLGFCRHGAG Trigger: TCCTGCACCATGTCTACAGAAGCCCAAGCCATGGCAGAGCCCACTGGGCAGGGCCCCAAGAACCCACGTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CCA 72 bp | CTGCCCGCTTTGGTGACAATCATCTCTGTGCCCAGCTaGTTGAACTCTTCCCACAGTGGCTTCATCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LPALVTIISVPS*LNSSHSGFISS Trigger: GCTGGAGATGAAGCCACTGTGGGAAGAGTTCAACCAGCTGGGCACAGAGATGATTGTCACCAAAGCGGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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| CDS CAA 72 bp | AGCCAGGCAGAACTGTGGAATGCGTACCTGTATCTCTaGTCATCCAACGGGATAAAGTCCATGAGCAAAGCG | + |
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Preference number: 6 (lower is better) Translates to: SQAELWNAYLYL*SSNGIKSMSKA Trigger: CGCTTTGCTCATGGACTTTATCCCGTTGGATGACAAGAGATACAGGTACGCATTCCACAGTTCTGCCTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041871.9 |
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