RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TBPL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061809

Ensembl transcript IDs: ENSMUST00000080453.8, ENSMUST00000153338.2

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAACAGCTCTCTCTGCTGTaGTTAATCACATATCCAAAT +
Preference number: 2 (lower is better)
Translates to: KSNYILGYVADPVSKTRQQLSLL*LITYPN
Trigger: ATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTG...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
3UTR-3UTR CCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAAAATAATAGAGACCCATaGCTGCTAGAAAACAAAGGA +
Preference number: 2 (lower is better)
Translates to: KSNYILGYVADPVSKTRQNNRDP*LLENKG
Trigger: TCCTTTGTTTTCTAGCAGCCATGGGTCTCTATTATT...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
CDS-3UTR TCA 90 bp CTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGAGGGCTGGTTGGAGTaGGCATCATCAAAGCACAGG +
Preference number: 4 (lower is better)
Translates to: LSLLCLITYPNYCLKPRDEGWLE*ASSKHR
Trigger: CCTGTGCTTTGATGATGCTCACTCCAACCAGCCCTC...ATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCAGAGGGCTGGTTGGAGTaGGCATCATCAAAGCACAGG +
Preference number: 4 (lower is better)
Translates to: SLLCLITYPNYCLKPRDAEGWLE*ASSKHR
Trigger: CCTGTGCTTTGATGATGCTCACTCCAACCAGCCCTC...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR GCA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCAGGGAACCCGAGCTTCTaGACCACACGAGCATACTTT +
Preference number: 4 (lower is better)
Translates to: SLLCLITYPNYCLKPRDAGNPSF*TTRAYF
Trigger: AAAGTATGCTCGTGTGGTGCAGAAGCTCGGGTTCCC...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR GCA 90 bp AATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCGGGAACCCGAGCTTCTaGACCACACGAGCATACTTT +
Preference number: 4 (lower is better)
Translates to: NQLSLLCLITYPNYCLKPGNPSF*TTRAYF
Trigger: AAAGTATGCTCGTGTGGTGCAGAAGCTCGGGTTCCC...GGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp AATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCGGAGTTTGGTGTTTCTaGAGAGGGCTGGTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: NQLSLLCLITYPNYCLKPGVWCF*RGLVGV
Trigger: CACTCCAACCAGCCCTCTCCAGAAACACCAAACTCC...GGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCCAGTGGATGCCTTTTTaGCTCCACCAAGATGTGGAT +
Preference number: 4 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCQWMPF*LHQDVD
Trigger: ATCCACATCTTGGTGGAGTCAAAAAGGCATCCACTG...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGCAGTGGATGCCTTTTTaGCTCCACCAAGATGTGGAT +
Preference number: 4 (lower is better)
Translates to: SALSAVLNHISKLLLEAQQWMPF*LHQDVD
Trigger: ATCCACATCTTGGTGGAGTCAAAAAGGCATCCACTG...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR GCA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCACAGCTTTCCTCACTTaGCAGCTTGTTTCCAGTGAC +
Preference number: 4 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCTAFLT*QLVSSD
Trigger: GTCACTGGAAACAAGCTGGCAAGTGAGGAAAGCTGT...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp CAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGACTCCACCAAGATGTaGATGAAACACAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: QLSLLCLITYPNYCLKPRDSTKM*MKHSLW
Trigger: CCAGAGACTGTGTTTCATCCACATCTTGGTGGAGTC...TCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGGACTCCACCAAGATGTaGATGAAACACAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: SALSAVLNHISKLLLEAQDSTKM*MKHSLW
Trigger: CCAGAGACTGTGTTTCATCCACATCTTGGTGGAGTC...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp GCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGAGAGAGCTGTTGTCCTTaGCTCTCGGATCCTCATTAT +
Preference number: 4 (lower is better)
Translates to: ALSAVLNHISKLLLEAQRESCCP*LSDPHY
Trigger: ATAATGAGGATCCGAGAGCCAAGGACAACAGCTCTC...TCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGCCACCAAGATGTGGATaGAACACAGTCTCTGGATTA +
Preference number: 4 (lower is better)
Translates to: SALSAVLNHISKLLLEAQPPRCG*NTVSGL
Trigger: TAATCCAGAGACTGTGTTTCATCCACATCTTGGTGG...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCCCACCAAGATGTGGATaGAACACAGTCTCTGGATTA +
Preference number: 4 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCPPRCG*NTVSGL
Trigger: TAATCCAGAGACTGTGTTTCATCCACATCTTGGTGG...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp GCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGACCAAAATCTCCAGCCTaGTGGGAAATTTCACATCAC +
Preference number: 4 (lower is better)
Translates to: ALSAVLNHISKLLLEAQRPKSPA*WEISHH
Trigger: GTGATGTGAAATTTCCCATCAGGCTGGAGATTTTGG...TCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR GCA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCAACAGCTTTCCTCACTTaGCAGCTTGTTTCCAGTGAC +
Preference number: 4 (lower is better)
Translates to: SLLCLITYPNYCLKPRDATAFLT*QLVSSD
Trigger: GTCACTGGAAACAAGCTGGCAAGTGAGGAAAGCTGT...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp GCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGACAGTTGAGACATAGCTaGAGGAAAGTCATCCTGGAT +
Preference number: 4 (lower is better)
Translates to: ALSAVLNHISKLLLEAQRQLRHS*RKVILD
Trigger: ATCCAGGATGACTTTCCTCCAGCTATGTCTCAACTG...TCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCACCACAGGTAAGGCATTaGAGTTTGGTGTTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: SLLCLITYPNYCLKPRDAPQVRH*SLVFLE
Trigger: CTCCAGAAACACCAAACTCCAATGCCTTACCTGTGG...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCAGAGAGCTGTTGTCCTTaGCTCTCGGATCCTCATTAT +
Preference number: 4 (lower is better)
Translates to: SLLCLITYPNYCLKPRDAESCCP*LSDPHY
Trigger: ATAATGAGGATCCGAGAGCCAAGGACAACAGCTCTC...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp CTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATCTACTGAACTGCCGATaGGTTAGTGCCAAAATCTCC +
Preference number: 4 (lower is better)
Translates to: LSLLCLITYPNYCLKPRDLLNCR*VSAKIS
Trigger: GGAGATTTTGGCACTAACCCATCGGCAGTTCAGTAG...ATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCCCAGCTTGTTTCCAGTaGCAGTTTGGTCTCTATTTT +
Preference number: 4 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCPACFQ*QFGLYF
Trigger: AAAATAGAGACCAAACTGTCACTGGAAACAAGCTGG...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp AAATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCTACTGAACTGCCGATaGGTTAGTGCCAAAATCTCC +
Preference number: 4 (lower is better)
Translates to: KSALSAVLNHISKLLLEALLNCR*VSAKIS
Trigger: GGAGATTTTGGCACTAACCCATCGGCAGTTCAGTAG...GGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAACCACAGGTAAGGCATTaGAGTTTGGTGTTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: KSNYILGYVADPVSKTRQPQVRH*SLVFLE
Trigger: CTCCAGAAACACCAAACTCCAATGCCTTACCTGTGG...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
CDS-3UTR CCA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAATTCCAGAAAATCCTaGAACAGGGTTCATTGGCAT +
Preference number: 4 (lower is better)
Translates to: SALSAVLNHISKLLLEAQNSRKS*NRVHWH
Trigger: ATGCCAATGAACCCTGTTCCAGGATTTTCTGGAATT...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR TCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAACCAAAATCTCCAGCCTaGTGGGAAATTTCACATCAC +
Preference number: 4 (lower is better)
Translates to: KSNYILGYVADPVSKTRQPKSPA*WEISHH
Trigger: GTGATGTGAAATTTCCCATCAGGCTGGAGATTTTGG...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
CDS-3UTR GCA 90 bp AATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCTTTACAGGCCAGATTTaGAGTGGAAACTACATTCTG +
Preference number: 4 (lower is better)
Translates to: NQLSLLCLITYPNYCLKPFTGQI*SGNYIL
Trigger: CAGAATGTAGTTTCCACTGCAAATCTGGCCTGTAAA...GGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAACAGTTGAGACATAGCTaGAGGAAAGTCATCCTGGAT +
Preference number: 4 (lower is better)
Translates to: KSNYILGYVADPVSKTRQQLRHS*RKVILD
Trigger: ATCCAGGATGACTTTCCTCCAGCTATGTCTCAACTG...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
CDS-3UTR CCA 90 bp CAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGATGGTCTCTATTTTCTTaGGTAAGTTCATCTGGTAAG +
Preference number: 4 (lower is better)
Translates to: QLSLLCLITYPNYCLKPRWSLFS*VSSSGK
Trigger: CTTACCAGATGAACTTACCCAAGAAAATAGAGACCA...TCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp GCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATTTCCAGTGACAGTTTaGTCTCTATTTTCTTGGGTA +
Preference number: 4 (lower is better)
Translates to: ALSAVLNHISKLLLEAQRFPVTV*SLFSWV
Trigger: TACCCAAGAAAATAGAGACCAAACTGTCACTGGAAA...TCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp AATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAATTCCAGAAAATCCTaGAACAGGGTTCATTGGCAT +
Preference number: 4 (lower is better)
Translates to: NQLSLLCLITYPNYCLKPNSRKS*NRVHWH
Trigger: ATGCCAATGAACCCTGTTCCAGGATTTTCTGGAATT...GGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp GCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGAAGGCCAGATTTGCAGTaGAAACTACATTCTGTAATT +
Preference number: 4 (lower is better)
Translates to: ALSAVLNHISKLLLEAQRRPDLQ*KLHSVI
Trigger: AATTACAGAATGTAGTTTCCACTGCAAATCTGGCCT...TCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCATTTCCAGTGACAGTTTaGTCTCTATTTTCTTGGGTA +
Preference number: 4 (lower is better)
Translates to: SLLCLITYPNYCLKPRDAFPVTV*SLFSWV
Trigger: TACCCAAGAAAATAGAGACCAAACTGTCACTGGAAA...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCTGCAGCAAACCTCTTTaGGTTATATTCTGTGTTTTT +
Preference number: 4 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCCSKPL*VIFCVF
Trigger: AAAAACACAGAATATAACCCAAAGAGGTTTGCTGCA...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CCA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGTGCAGCAAACCTCTTTaGGTTATATTCTGTGTTTTT +
Preference number: 4 (lower is better)
Translates to: SALSAVLNHISKLLLEAQCSKPL*VIFCVF
Trigger: AAAAACACAGAATATAACCCAAAGAGGTTTGCTGCA...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR GCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAATTTACAGGCCAGATTTaGAGTGGAAACTACATTCTG +
Preference number: 4 (lower is better)
Translates to: KSNYILGYVADPVSKTRQFTGQI*SGNYIL
Trigger: CAGAATGTAGTTTCCACTGCAAATCTGGCCTGTAAA...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
CDS-3UTR GCA 90 bp AAATCAAACTACATTTTAGGTTACGTAGCAGACCCTGTTTCCAAAACAAGGCAAGATCCTCATTATTACTaGAGCAAACCTCTTTGGGTT +
Preference number: 4 (lower is better)
Translates to: KSNYILGYVADPVSKTRQDPHYY*SKPLWV
Trigger: AACCCAAAGAGGTTTGCTGCAGTAATAATGAGGATC...TTGCCTTGTTTTGGAAACAGGGTCTGCTACGTAACCTAAAATGTAGTTTGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080453.8
CDS GCA 90 bp GACAGGGAACCCGAGCTTCTGCACCACACGAGCATACTTTCTCGCTaGCAGCCGAGACTCCTCTTCACTTTTGGCTCCTGTACAGACCAC +
Preference number: 5 (lower is better)
Translates to: DREPELLHHTSILSR*QPRLLFTFGSCTDH
Trigger: GTGGTCTGTACAGGAGCCAAAAGTGAAGAGGAGTCTCGGCTGGCAGCGAGAAAGTATGCTCGTGTGGTGCAGAAGCTCGGGTTCCCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS TCA 90 bp GGTAAGGCATTGGAGTTTGGTGTTTCTGGAGAGGGCTGGTTGGAGTaGGCATCATCAAAGCACAGGCATGACTGGGGATCTGGTGAACTG +
Preference number: 5 (lower is better)
Translates to: GKALEFGVSGEGWLE*ASSKHRHDWGSGEL
Trigger: CAGTTCACCAGATCCCCAGTCATGCCTGTGCTTTGATGATGCTCACTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAATGCCTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 90 bp GAGCATCATCAAAGCACAGGCATGACTGGGGATCTGGTGAACTGTTaGTATTCAAGTTCAGCTCACTGCCATGTTCATCGGGCAACTGCA +
Preference number: 5 (lower is better)
Translates to: EHHQSTGMTGDLVNC*YSSSAHCHVHRATA
Trigger: TGCAGTTGCCCGATGAACATGGCAGTGAGCTGAACTTGAATAGCAACAGTTCACCAGATCCCCAGTCATGCCTGTGCTTTGATGATGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 90 bp ATGACTGGGGATCTGGTGAACTGTTGCTATTCAAGTTCAGCTCACTaGCATGTTCATCGGGCAACTGCAACTGACTTTGTCGATCTCGAG +
Preference number: 5 (lower is better)
Translates to: MTGDLVNCCYSSSAH*HVHRATATDFVDLE
Trigger: CTCGAGATCGACAAAGTCAGTTGCAGTTGCCCGATGAACATGGCAGTGAGCTGAACTTGAATAGCAACAGTTCACCAGATCCCCAGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 90 bp GGTTCATTGGCATCATGGATGCTATCAATGCCACAGGTAAGGCATTaGAGTTTGGTGTTTCTGGAGAGGGCTGGTTGGAGTGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: GSLASWMLSMPQVRH*SLVFLERAGWSEHH
Trigger: ATGATGCTCACTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAATGCCTTACCTGTGGCATTGATAGCATCCATGATGCCAATGAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 90 bp CTGCAACTGACTTTGTCGATCTCGAGTCCTACAGCTTTCCTCACTTaGCAGCTTGTTTCCAGTGACAGTTTGGTCTCTATTTTCTTGGGT +
Preference number: 5 (lower is better)
Translates to: LQLTLSISSPTAFLT*QLVSSDSLVSIFLG
Trigger: ACCCAAGAAAATAGAGACCAAACTGTCACTGGAAACAAGCTGGCAAGTGAGGAAAGCTGTAGGACTCGAGATCGACAAAGTCAGTTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 90 bp TGTACAGACCACTTTCCCAGAGCTAAAGATGAGAGCTGTTGTCCTTaGCTCTCGGATCCTCATTATTACTGCAGCAAACCTCTTTGGGTT +
Preference number: 5 (lower is better)
Translates to: CTDHFPRAKDESCCP*LSDPHYYCSKPLWV
Trigger: AACCCAAAGAGGTTTGCTGCAGTAATAATGAGGATCCGAGAGCCAAGGACAACAGCTCTCATCTTTAGCTCTGGGAAAGTGGTCTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGTCCTGGGCTGAACAGTaGAGACATAGCTGGAGGAAA +
Preference number: 5 (lower is better)
Translates to: SALSAVLNHISKLLLEAQSWAEQ*RHSWRK
Trigger: TTTCCTCCAGCTATGTCTCAACTGTTCAGCCCAGGA...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCTCCTGGGCTGAACAGTaGAGACATAGCTGGAGGAAA +
Preference number: 5 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCSWAEQ*RHSWRK
Trigger: TTTCCTCCAGCTATGTCTCAACTGTTCAGCCCAGGA...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCTCAGTGGATGCCTTTTaGACTCCACCAAGATGTGGA +
Preference number: 5 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCSVDAF*TPPRCG
Trigger: TCCACATCTTGGTGGAGTCAAAAAGGCATCCACTGA...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp CAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGACTGGAACAGGGTTCATaGGCATCATGGATGCTATCA +
Preference number: 5 (lower is better)
Translates to: QLSLLCLITYPNYCLKPRLEQGS*ASWMLS
Trigger: TGATAGCATCCATGATGCCAATGAACCCTGTTCCAG...TCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 90 bp GTCCTACAGCTTTCCTCACTTGCCAGCTTGTTTCCAGTGACAGTTTaGTCTCTATTTTCTTGGGTAAGTTCATCTGGTAAGAAGCTTAGA +
Preference number: 5 (lower is better)
Translates to: VLQLSSLASLFPVTV*SLFSWVSSSGKKLR
Trigger: TCTAAGCTTCTTACCAGATGAACTTACCCAAGAAAATAGAGACCAAACTGTCACTGGAAACAAGCTGGCAAGTGAGGAAAGCTGTAGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp CTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCATCTCAGAACGCTCTTaGGCACCTGTTAACACAACT +
Preference number: 5 (lower is better)
Translates to: LSAVLNHISKLLLEAQRCISERS*APVNTT
Trigger: AGTTGTGTTAACAGGTGCCAAAGAGCGTTCTGAGAT...GCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS TCA 90 bp GATGAAAAGTCAGTGGATGCCTTTTTGACTCCACCAAGATGTGGATaGAACACAGTCTCTGGATTAGATGGAAGTGAGTGCATGTCTAAA +
Preference number: 5 (lower is better)
Translates to: DEKSVDAFLTPPRCG*NTVSGLDGSECMSK
Trigger: TTTAGACATGCACTCACTTCCATCTAATCCAGAGACTGTGTTTCATCCACATCTTGGTGGAGTCAAAAAGGCATCCACTGACTTTTCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS TCA 90 bp TCCAATTTACAGGCCAGATTTGCAGTGGAAACTACATTCTGTAATTaGGGCACAATTCCAGAAAATCCTGGAACAGGGTTCATTGGCATC +
Preference number: 5 (lower is better)
Translates to: SNLQARFAVETTFCN*GTIPENPGTGFIGI
Trigger: GATGCCAATGAACCCTGTTCCAGGATTTTCTGGAATTGTGCCTCAATTACAGAATGTAGTTTCCACTGCAAATCTGGCCTGTAAATTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp AAATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCTCAGTGGATGCCTTTTaGACTCCACCAAGATGTGGA +
Preference number: 5 (lower is better)
Translates to: KSALSAVLNHISKLLLEASVDAF*TPPRCG
Trigger: TCCACATCTTGGTGGAGTCAAAAAGGCATCCACTGA...GGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp TCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAGATGCAATCTCAGAACGCTCTTaGGCACCTGTTAACACAACT +
Preference number: 5 (lower is better)
Translates to: SLLCLITYPNYCLKPRDAISERS*APVNTT
Trigger: AGTTGTGTTAACAGGTGCCAAAGAGCGTTCTGAGAT...TGCATCTCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 90 bp TCACTTGCCAGCTTGTTTCCAGTGACAGTTTGGTCTCTATTTTCTTaGGTAAGTTCATCTGGTAAGAAGCTTAGATCCACAGATGAAAAG +
Preference number: 5 (lower is better)
Translates to: SLASLFPVTVWSLFS*VSSSGKKLRSTDEK
Trigger: CTTTTCATCTGTGGATCTAAGCTTCTTACCAGATGAACTTACCCAAGAAAATAGAGACCAAACTGTCACTGGAAACAAGCTGGCAAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp CAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGAATTTACAGGCCAGATTaGCAGTGGAAACTACATTCT +
Preference number: 5 (lower is better)
Translates to: QLSLLCLITYPNYCLKPRIYRPD*QWKLHS
Trigger: AGAATGTAGTTTCCACTGCAAATCTGGCCTGTAAAT...TCTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp TCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCAGCTGCAGCAAACCTCTTaGGGTTATATTCTGTGTTTT +
Preference number: 5 (lower is better)
Translates to: SALSAVLNHISKLLLEAQLQQTS*GYILCF
Trigger: AAAACACAGAATATAACCCAAAGAGGTTTGCTGCAG...CTGGGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp AAATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCATTTACAGGCCAGATTaGCAGTGGAAACTACATTCT +
Preference number: 5 (lower is better)
Translates to: KSALSAVLNHISKLLLEAIYRPD*QWKLHS
Trigger: AGAATGTAGTTTCCACTGCAAATCTGGCCTGTAAAT...GGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS-3UTR CAA 90 bp AAATCAGCTCTCTCTGCTGTGCTTAATCACATATCCAAATTATTGCTTGAAGCCCTGCAGCAAACCTCTTaGGGTTATATTCTGTGTTTT +
Preference number: 5 (lower is better)
Translates to: KSALSAVLNHISKLLLEALQQTS*GYILCF
Trigger: AAAACACAGAATATAACCCAAAGAGGTTTGCTGCAG...GGCTTCAAGCAATAATTTGGATATGTGATTAAGCACAGCAGAGAGAGCTGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 72 bp CCCGAGCTTCTGCACCACACGAGCATACTTTCTCGCTaGCAGCCGAGACTCCTCTTCACTTTTGGCTCCTGT +
Preference number: 6 (lower is better)
Translates to: PELLHHTSILSR*QPRLLFTFGSC
Trigger: ACAGGAGCCAAAAGTGAAGAGGAGTCTCGGCTGGCAGCGAGAAAGTATGCTCGTGTGGTGCAGAAGCTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS TCA 72 bp TTGGAGTTTGGTGTTTCTGGAGAGGGCTGGTTGGAGTaGGCATCATCAAAGCACAGGCATGACTGGGGATCT +
Preference number: 6 (lower is better)
Translates to: LEFGVSGEGWLE*ASSKHRHDWGS
Trigger: AGATCCCCAGTCATGCCTGTGCTTTGATGATGCTCACTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 72 bp GGCATCATGGATGCTATCAATGCCACAGGTAAGGCATaGGAGTTTGGTGTTTCTGGAGAGGGCTGGTTGGAG +
Preference number: 6 (lower is better)
Translates to: GIMDAINATGKA*EFGVSGEGWLE
Trigger: CTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAATGCCTTACCTGTGGCATTGATAGCATCCATGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 72 bp TACTTTCTCGCTGCCAGCCGAGACTCCTCTTCACTTTaGGCTCCTGTACAGACCACTTTCCCAGAGCTAAAG +
Preference number: 6 (lower is better)
Translates to: YFLAASRDSSSL*APVQTTFPELK
Trigger: CTTTAGCTCTGGGAAAGTGGTCTGTACAGGAGCCAAAAGTGAAGAGGAGTCTCGGCTGGCAGCGAGAAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 72 bp CAAAGCACAGGCATGACTGGGGATCTGGTGAACTGTTaGTATTCAAGTTCAGCTCACTGCCATGTTCATCGG +
Preference number: 6 (lower is better)
Translates to: QSTGMTGDLVNC*YSSSAHCHVHR
Trigger: CCGATGAACATGGCAGTGAGCTGAACTTGAATAGCAACAGTTCACCAGATCCCCAGTCATGCCTGTGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 72 bp TTAAAATTGAAGAATCTGACAGGGAACCCGAGCTTCTaGACCACACGAGCATACTTTCTCGCTGCCAGCCGA +
Preference number: 6 (lower is better)
Translates to: LKLKNLTGNPSF*TTRAYFLAASR
Trigger: TCGGCTGGCAGCGAGAAAGTATGCTCGTGTGGTGCAGAAGCTCGGGTTCCCTGTCAGATTCTTCAATTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 72 bp GCATCATGGATGCTATCAATGCCACAGGTAAGGCATTaGAGTTTGGTGTTTCTGGAGAGGGCTGGTTGGAGT +
Preference number: 6 (lower is better)
Translates to: ASWMLSMPQVRH*SLVFLERAGWS
Trigger: ACTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAATGCCTTACCTGTGGCATTGATAGCATCCATGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 72 bp TGGATGCTATCAATGCCACAGGTAAGGCATTGGAGTTaGGTGTTTCTGGAGAGGGCTGGTTGGAGTGAGCAT +
Preference number: 6 (lower is better)
Translates to: WMLSMPQVRHWS*VFLERAGWSEH
Trigger: ATGCTCACTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAATGCCTTACCTGTGGCATTGATAGCATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 90 bp TTGGCATCATGGATGCTATCAATGCCACAGGTAAGGCATTGGAGTTaGGTGTTTCTGGAGAGGGCTGGTTGGAGTGAGCATCATCAAAGC +
Preference number: 6 (lower is better)
Translates to: LASWMLSMPQVRHWS*VFLERAGWSEHHQS
Trigger: GCTTTGATGATGCTCACTCCAACCAGCCCTCTCCAGAAACACCAAACTCCAATGCCTTACCTGTGGCATTGATAGCATCCATGATGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS GCA 72 bp GATCTGGTGAACTGTTGCTATTCAAGTTCAGCTCACTaGCATGTTCATCGGGCAACTGCAACTGACTTTGTC +
Preference number: 6 (lower is better)
Translates to: DLVNCCYSSSAH*HVHRATATDFV
Trigger: GACAAAGTCAGTTGCAGTTGCCCGATGAACATGGCAGTGAGCTGAACTTGAATAGCAACAGTTCACCAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 72 bp CACTTTCCCAGAGCTAAAGATGAGAGCTGTTGTCCTTaGCTCTCGGATCCTCATTATTACTGCAGCAAACCT +
Preference number: 6 (lower is better)
Translates to: HFPRAKDESCCP*LSDPHYYCSKP
Trigger: AGGTTTGCTGCAGTAATAATGAGGATCCGAGAGCCAAGGACAACAGCTCTCATCTTTAGCTCTGGGAAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 72 bp GAGGCACAATTCCAGAAAATCCTGGAACAGGGTTCATaGGCATCATGGATGCTATCAATGCCACAGGTAAGG +
Preference number: 6 (lower is better)
Translates to: EAQFQKILEQGS*ASWMLSMPQVR
Trigger: CCTTACCTGTGGCATTGATAGCATCCATGATGCCAATGAACCCTGTTCCAGGATTTTCTGGAATTGTGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS TCA 72 bp TCAGTGGATGCCTTTTTGACTCCACCAAGATGTGGATaGAACACAGTCTCTGGATTAGATGGAAGTGAGTGC +
Preference number: 6 (lower is better)
Translates to: SVDAFLTPPRCG*NTVSGLDGSEC
Trigger: GCACTCACTTCCATCTAATCCAGAGACTGTGTTTCATCCACATCTTGGTGGAGTCAAAAAGGCATCCACTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 90 bp TCTGTAATTGAGGCACAATTCCAGAAAATCCTGGAACAGGGTTCATaGGCATCATGGATGCTATCAATGCCACAGGTAAGGCATTGGAGT +
Preference number: 6 (lower is better)
Translates to: SVIEAQFQKILEQGS*ASWMLSMPQVRHWS
Trigger: ACTCCAATGCCTTACCTGTGGCATTGATAGCATCCATGATGCCAATGAACCCTGTTCCAGGATTTTCTGGAATTGTGCCTCAATTACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 72 bp CTTTCCTCACTTGCCAGCTTGTTTCCAGTGACAGTTTaGTCTCTATTTTCTTGGGTAAGTTCATCTGGTAAG +
Preference number: 6 (lower is better)
Translates to: LSSLASLFPVTV*SLFSWVSSSGK
Trigger: CTTACCAGATGAACTTACCCAAGAAAATAGAGACCAAACTGTCACTGGAAACAAGCTGGCAAGTGAGGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CAA 90 bp TGGCATTCAGGGCTATTTTTCTCAGATCCAATTTACAGGCCAGATTaGCAGTGGAAACTACATTCTGTAATTGAGGCACAATTCCAGAAA +
Preference number: 6 (lower is better)
Translates to: WHSGLFFSDPIYRPD*QWKLHSVIEAQFQK
Trigger: TTTCTGGAATTGTGCCTCAATTACAGAATGTAGTTTCCACTGCAAATCTGGCCTGTAAATTGGATCTGAGAAAAATAGCCCTGAATGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2
CDS CCA 72 bp AGCTTGTTTCCAGTGACAGTTTGGTCTCTATTTTCTTaGGTAAGTTCATCTGGTAAGAAGCTTAGATCCACA +
Preference number: 6 (lower is better)
Translates to: SLFPVTVWSLFS*VSSSGKKLRST
Trigger: TGTGGATCTAAGCTTCTTACCAGATGAACTTACCCAAGAAAATAGAGACCAAACTGTCACTGGAAACAAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080453.8
ENSMUST00000153338.2